Query 026702
Match_columns 235
No_of_seqs 198 out of 604
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.5 1.5E-13 3.1E-18 131.1 10.5 84 75-158 233-321 (411)
2 PF00010 HLH: Helix-loop-helix 99.5 6.4E-14 1.4E-18 97.6 4.3 51 76-126 2-55 (55)
3 cd00083 HLH Helix-loop-helix d 99.4 1.3E-13 2.9E-18 96.0 5.4 55 75-129 4-59 (60)
4 smart00353 HLH helix loop heli 99.4 4.3E-13 9.3E-18 92.0 6.5 51 80-130 1-52 (53)
5 KOG1319 bHLHZip transcription 99.0 1.8E-09 4E-14 94.6 8.0 80 75-154 62-146 (229)
6 KOG2483 Upstream transcription 98.9 2.2E-08 4.7E-13 89.8 10.9 82 73-154 57-139 (232)
7 KOG4304 Transcriptional repres 98.5 5.1E-08 1.1E-12 88.1 3.0 56 74-130 31-93 (250)
8 KOG3561 Aryl-hydrocarbon recep 98.5 1.2E-07 2.7E-12 97.1 5.8 52 76-128 21-75 (803)
9 KOG2588 Predicted DNA-binding 98.5 1.4E-07 3E-12 97.5 4.6 77 62-140 264-340 (953)
10 KOG0561 bHLH transcription fac 98.1 3.2E-06 7E-11 78.9 4.0 65 76-140 61-125 (373)
11 KOG3960 Myogenic helix-loop-he 97.9 2.7E-05 5.9E-10 71.1 6.9 62 74-135 117-178 (284)
12 PRK15422 septal ring assembly 97.5 0.00081 1.8E-08 51.7 9.0 60 115-174 13-72 (79)
13 KOG4029 Transcription factor H 97.5 8.7E-05 1.9E-09 65.4 4.2 61 74-134 108-170 (228)
14 PLN03217 transcription factor 97.4 0.00053 1.2E-08 53.7 6.7 59 84-142 16-78 (93)
15 COG3074 Uncharacterized protei 97.4 0.0017 3.6E-08 49.4 8.9 60 115-174 13-72 (79)
16 PF06005 DUF904: Protein of un 97.4 0.0019 4.1E-08 48.6 9.0 54 119-172 3-56 (72)
17 PF06005 DUF904: Protein of un 96.9 0.014 3.1E-07 43.9 9.5 50 116-165 14-63 (72)
18 TIGR02894 DNA_bind_RsfA transc 96.8 0.0093 2E-07 51.4 8.9 59 115-173 82-143 (161)
19 PRK15422 septal ring assembly 96.3 0.035 7.6E-07 42.8 8.4 56 119-174 3-65 (79)
20 KOG2264 Exostosin EXT1L [Signa 96.3 0.045 9.7E-07 55.7 11.3 95 114-208 87-187 (907)
21 KOG3910 Helix loop helix trans 96.3 0.0043 9.2E-08 61.7 4.1 57 75-131 526-584 (632)
22 KOG4005 Transcription factor X 96.0 0.12 2.6E-06 47.5 11.9 90 76-173 60-150 (292)
23 PF06156 DUF972: Protein of un 96.0 0.041 8.9E-07 44.2 7.8 53 124-176 5-57 (107)
24 TIGR03752 conj_TIGR03752 integ 95.9 0.049 1.1E-06 53.8 9.5 62 114-175 60-143 (472)
25 smart00338 BRLZ basic region l 95.9 0.028 6.1E-07 40.4 5.9 60 83-157 4-63 (65)
26 PRK13729 conjugal transfer pil 95.8 0.21 4.6E-06 49.4 13.3 59 119-177 68-126 (475)
27 PF00170 bZIP_1: bZIP transcri 95.8 0.038 8.3E-07 39.6 6.2 36 120-155 26-61 (64)
28 PF07106 TBPIP: Tat binding pr 95.5 0.056 1.2E-06 45.4 7.2 55 122-176 81-137 (169)
29 PRK13169 DNA replication intia 95.5 0.084 1.8E-06 42.8 7.8 51 124-174 5-55 (110)
30 PF06156 DUF972: Protein of un 95.4 0.11 2.3E-06 41.9 8.2 57 109-169 1-57 (107)
31 PF12325 TMF_TATA_bd: TATA ele 95.1 0.19 4E-06 41.3 8.7 49 119-167 15-63 (120)
32 PRK11637 AmiB activator; Provi 95.0 0.32 6.9E-06 46.5 11.5 61 113-173 68-128 (428)
33 COG3074 Uncharacterized protei 95.0 0.24 5.2E-06 37.8 8.3 52 119-170 3-54 (79)
34 PF08317 Spc7: Spc7 kinetochor 94.9 0.41 9E-06 44.5 11.7 15 87-101 186-200 (325)
35 COG4026 Uncharacterized protei 94.7 0.22 4.8E-06 45.7 9.1 54 120-173 135-188 (290)
36 PRK13729 conjugal transfer pil 94.7 0.26 5.6E-06 48.9 10.1 60 114-173 70-129 (475)
37 PRK10884 SH3 domain-containing 94.7 0.67 1.5E-05 41.1 11.8 78 85-172 93-170 (206)
38 PRK10884 SH3 domain-containing 94.6 0.23 4.9E-06 44.0 8.8 32 143-174 134-165 (206)
39 COG3883 Uncharacterized protei 94.6 0.17 3.6E-06 46.8 8.0 53 120-172 38-90 (265)
40 PF12329 TMF_DNA_bd: TATA elem 94.4 0.39 8.5E-06 36.1 8.3 55 120-174 12-66 (74)
41 TIGR02449 conserved hypothetic 94.4 0.43 9.2E-06 35.5 8.3 55 121-175 8-62 (65)
42 PRK04406 hypothetical protein; 94.3 0.68 1.5E-05 35.0 9.5 52 124-175 8-59 (75)
43 PRK02119 hypothetical protein; 94.3 0.71 1.5E-05 34.7 9.5 54 122-175 4-57 (73)
44 PF08614 ATG16: Autophagy prot 94.2 0.41 8.9E-06 41.3 9.2 82 85-173 88-169 (194)
45 PF14197 Cep57_CLD_2: Centroso 94.2 0.41 9E-06 35.7 8.0 52 122-173 7-65 (69)
46 PF10211 Ax_dynein_light: Axon 94.1 0.64 1.4E-05 40.4 10.2 17 85-101 59-75 (189)
47 PRK13169 DNA replication intia 94.0 0.41 8.8E-06 38.9 8.3 57 109-169 1-57 (110)
48 PF02183 HALZ: Homeobox associ 93.9 0.19 4.2E-06 34.6 5.4 40 132-171 3-42 (45)
49 KOG1962 B-cell receptor-associ 93.9 0.76 1.6E-05 41.4 10.5 62 112-173 150-211 (216)
50 smart00787 Spc7 Spc7 kinetocho 93.9 0.78 1.7E-05 43.0 11.1 82 85-169 179-260 (312)
51 PF04880 NUDE_C: NUDE protein, 93.8 0.099 2.1E-06 45.2 4.6 44 124-171 4-47 (166)
52 COG3883 Uncharacterized protei 93.7 0.5 1.1E-05 43.7 9.4 66 108-173 33-98 (265)
53 PRK00846 hypothetical protein; 93.6 0.99 2.1E-05 34.6 9.3 51 125-175 11-61 (77)
54 KOG2391 Vacuolar sorting prote 93.4 0.38 8.3E-06 46.1 8.1 47 132-178 223-269 (365)
55 PF13870 DUF4201: Domain of un 93.3 0.95 2.1E-05 38.3 9.8 70 115-184 72-141 (177)
56 PF04111 APG6: Autophagy prote 93.3 0.36 7.9E-06 45.0 7.8 16 158-173 116-131 (314)
57 TIGR02449 conserved hypothetic 93.3 0.86 1.9E-05 33.9 8.2 53 122-174 2-54 (65)
58 KOG3119 Basic region leucine z 93.2 0.99 2.2E-05 41.3 10.4 26 147-172 221-246 (269)
59 KOG4447 Transcription factor T 93.2 0.061 1.3E-06 46.5 2.4 53 75-127 78-130 (173)
60 PRK11637 AmiB activator; Provi 93.1 0.97 2.1E-05 43.2 10.6 32 142-173 90-121 (428)
61 PF08317 Spc7: Spc7 kinetochor 93.0 0.8 1.7E-05 42.6 9.7 12 90-101 168-179 (325)
62 PF00170 bZIP_1: bZIP transcri 93.0 0.86 1.9E-05 32.6 7.8 37 135-171 27-63 (64)
63 PRK00295 hypothetical protein; 92.9 1.4 3E-05 32.6 8.9 49 127-175 5-53 (68)
64 PHA02562 46 endonuclease subun 92.9 0.95 2.1E-05 43.8 10.3 76 86-168 331-406 (562)
65 PF13851 GAS: Growth-arrest sp 92.9 0.87 1.9E-05 40.0 9.2 61 113-173 20-80 (201)
66 PF07106 TBPIP: Tat binding pr 92.8 0.55 1.2E-05 39.4 7.6 48 125-172 77-126 (169)
67 KOG3560 Aryl-hydrocarbon recep 92.8 0.077 1.7E-06 53.6 2.8 47 77-123 27-75 (712)
68 PF04102 SlyX: SlyX; InterPro 92.6 0.74 1.6E-05 33.9 7.1 51 125-175 2-52 (69)
69 PF10186 Atg14: UV radiation r 92.5 0.8 1.7E-05 40.4 8.5 11 163-173 127-137 (302)
70 PRK02793 phi X174 lysis protei 92.5 2 4.3E-05 32.2 9.3 51 125-175 6-56 (72)
71 COG4467 Regulator of replicati 92.5 0.69 1.5E-05 37.8 7.3 50 124-173 5-54 (114)
72 PF02183 HALZ: Homeobox associ 92.4 0.45 9.8E-06 32.8 5.3 37 125-161 3-39 (45)
73 PF12325 TMF_TATA_bd: TATA ele 92.4 1.6 3.4E-05 35.9 9.4 64 110-173 13-79 (120)
74 TIGR02231 conserved hypothetic 92.2 1.1 2.3E-05 44.0 9.7 87 86-176 72-173 (525)
75 PF09789 DUF2353: Uncharacteri 92.1 2.1 4.6E-05 40.6 11.2 68 86-154 38-113 (319)
76 KOG4571 Activating transcripti 91.9 1.4 3E-05 41.4 9.6 50 117-173 238-287 (294)
77 TIGR02894 DNA_bind_RsfA transc 91.8 1.1 2.3E-05 38.9 8.2 51 120-170 97-147 (161)
78 PF13815 Dzip-like_N: Iguana/D 91.7 1.2 2.6E-05 35.8 8.0 55 114-171 63-117 (118)
79 smart00338 BRLZ basic region l 91.7 1.8 4E-05 30.9 8.2 35 137-171 29-63 (65)
80 PF10805 DUF2730: Protein of u 91.7 0.88 1.9E-05 36.1 7.1 50 123-172 45-96 (106)
81 PRK04325 hypothetical protein; 91.6 2.7 5.8E-05 31.6 9.2 52 124-175 6-57 (74)
82 PF11932 DUF3450: Protein of u 91.5 1.1 2.4E-05 39.9 8.3 8 212-219 212-219 (251)
83 PF08172 CASP_C: CASP C termin 91.4 1.2 2.5E-05 40.6 8.5 51 125-175 84-134 (248)
84 PF10186 Atg14: UV radiation r 91.4 3.5 7.6E-05 36.3 11.3 22 152-173 123-144 (302)
85 PF10224 DUF2205: Predicted co 91.3 2.7 5.8E-05 32.4 9.1 44 124-167 20-63 (80)
86 PF07716 bZIP_2: Basic region 91.2 0.61 1.3E-05 32.5 5.0 29 141-169 25-53 (54)
87 PF04977 DivIC: Septum formati 90.9 1.1 2.4E-05 32.3 6.5 42 131-172 21-62 (80)
88 PF14197 Cep57_CLD_2: Centroso 90.9 1.9 4.2E-05 32.1 7.8 50 119-168 18-67 (69)
89 PF10146 zf-C4H2: Zinc finger- 90.8 4.3 9.3E-05 36.7 11.4 17 120-136 32-48 (230)
90 PF12808 Mto2_bdg: Micro-tubul 90.7 0.97 2.1E-05 32.3 5.7 47 122-168 3-49 (52)
91 PF07798 DUF1640: Protein of u 90.6 2.7 5.9E-05 35.8 9.5 21 151-171 76-96 (177)
92 TIGR00219 mreC rod shape-deter 90.6 1.7 3.7E-05 40.0 8.8 42 130-174 69-110 (283)
93 KOG3558 Hypoxia-inducible fact 90.5 0.18 3.8E-06 52.1 2.5 47 80-127 51-99 (768)
94 PRK00736 hypothetical protein; 90.5 3.8 8.1E-05 30.3 9.0 47 129-175 7-53 (68)
95 KOG3119 Basic region leucine z 90.5 1.2 2.6E-05 40.7 7.8 33 123-155 218-250 (269)
96 COG2433 Uncharacterized conser 90.4 1 2.2E-05 46.1 7.7 44 115-158 417-460 (652)
97 PF11932 DUF3450: Protein of u 90.4 2.5 5.4E-05 37.7 9.5 12 159-170 81-92 (251)
98 PF10498 IFT57: Intra-flagella 90.3 2.5 5.3E-05 40.5 9.9 24 160-183 333-356 (359)
99 PF02403 Seryl_tRNA_N: Seryl-t 90.2 2.5 5.5E-05 32.7 8.3 50 124-173 40-92 (108)
100 PF10805 DUF2730: Protein of u 90.1 2.5 5.5E-05 33.5 8.3 55 122-176 37-93 (106)
101 PF10234 Cluap1: Clusterin-ass 90.0 1.3 2.8E-05 41.0 7.5 57 126-182 168-225 (267)
102 PRK13922 rod shape-determining 90.0 1.5 3.3E-05 39.3 7.9 39 131-173 73-111 (276)
103 PF05667 DUF812: Protein of un 90.0 1.3 2.8E-05 45.1 8.1 58 116-173 324-381 (594)
104 PF11559 ADIP: Afadin- and alp 90.0 8.8 0.00019 31.5 11.7 21 81-101 48-68 (151)
105 PF10473 CENP-F_leu_zip: Leuci 89.9 3.2 7E-05 35.0 9.2 39 135-173 53-91 (140)
106 PRK13922 rod shape-determining 89.9 2.2 4.7E-05 38.3 8.8 48 112-163 61-108 (276)
107 PF08172 CASP_C: CASP C termin 89.9 1.3 2.9E-05 40.3 7.5 61 109-169 75-135 (248)
108 PF07989 Microtub_assoc: Micro 89.9 2.4 5.2E-05 32.1 7.6 23 122-144 2-24 (75)
109 PRK09039 hypothetical protein; 89.7 2.2 4.7E-05 40.3 8.9 54 113-166 130-183 (343)
110 PF04977 DivIC: Septum formati 89.7 1.8 3.9E-05 31.1 6.7 32 122-153 19-50 (80)
111 PF05529 Bap31: B-cell recepto 89.5 2.8 6E-05 35.8 8.7 28 146-173 159-186 (192)
112 KOG0250 DNA repair protein RAD 89.5 1.8 4E-05 46.7 9.0 39 137-175 418-456 (1074)
113 PTZ00454 26S protease regulato 89.4 1.4 3.1E-05 42.3 7.6 41 139-179 27-67 (398)
114 COG1579 Zn-ribbon protein, pos 89.4 3.5 7.6E-05 37.6 9.7 48 122-169 91-138 (239)
115 COG2433 Uncharacterized conser 89.3 1.4 3.1E-05 45.1 7.7 37 120-156 429-465 (652)
116 COG0497 RecN ATPase involved i 89.3 5 0.00011 40.8 11.5 86 83-176 295-389 (557)
117 PF05377 FlaC_arch: Flagella a 89.3 2.5 5.4E-05 30.6 6.9 34 131-164 4-37 (55)
118 PHA03011 hypothetical protein; 89.2 3.8 8.2E-05 33.5 8.7 60 115-174 59-118 (120)
119 PF07200 Mod_r: Modifier of ru 89.2 3 6.6E-05 34.1 8.4 61 116-176 30-90 (150)
120 PF11559 ADIP: Afadin- and alp 89.1 6.5 0.00014 32.3 10.3 9 90-98 7-15 (151)
121 PF15035 Rootletin: Ciliary ro 88.9 3.5 7.5E-05 35.9 9.0 61 113-173 60-120 (182)
122 COG1340 Uncharacterized archae 88.9 6.3 0.00014 37.1 11.2 74 86-173 28-101 (294)
123 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.8 4.3 9.4E-05 33.0 9.0 30 116-145 55-84 (132)
124 PF14662 CCDC155: Coiled-coil 88.8 3.1 6.7E-05 37.0 8.6 33 142-174 96-128 (193)
125 PF04728 LPP: Lipoprotein leuc 88.8 4.1 8.9E-05 29.6 7.8 39 122-160 5-43 (56)
126 PRK00888 ftsB cell division pr 88.8 1.6 3.6E-05 34.7 6.3 45 122-173 29-73 (105)
127 PRK09039 hypothetical protein; 88.6 3.3 7.1E-05 39.1 9.3 47 127-173 137-183 (343)
128 PF04156 IncA: IncA protein; 88.5 4 8.7E-05 34.4 9.0 50 124-173 127-183 (191)
129 PF05008 V-SNARE: Vesicle tran 88.5 2.2 4.8E-05 31.2 6.5 58 109-172 21-78 (79)
130 PF08826 DMPK_coil: DMPK coile 88.5 7.1 0.00015 28.7 9.0 54 115-168 6-59 (61)
131 PF04111 APG6: Autophagy prote 88.5 3.8 8.3E-05 38.3 9.6 8 166-173 117-124 (314)
132 PF00038 Filament: Intermediat 88.3 3 6.4E-05 37.7 8.5 29 115-143 211-239 (312)
133 PF15458 NTR2: Nineteen comple 88.3 5.5 0.00012 36.2 10.2 85 77-172 141-253 (254)
134 TIGR00219 mreC rod shape-deter 88.3 1.7 3.8E-05 39.9 7.1 49 115-166 61-109 (283)
135 KOG0996 Structural maintenance 88.2 2.2 4.8E-05 46.6 8.7 83 90-174 804-897 (1293)
136 PF06632 XRCC4: DNA double-str 88.2 3.5 7.5E-05 39.3 9.2 43 114-156 131-173 (342)
137 PF09304 Cortex-I_coil: Cortex 88.1 2.9 6.2E-05 34.1 7.4 75 88-169 12-86 (107)
138 COG5570 Uncharacterized small 88.1 1.7 3.6E-05 31.6 5.3 23 149-171 34-56 (57)
139 PF05529 Bap31: B-cell recepto 88.1 3.1 6.7E-05 35.5 8.1 35 136-170 156-190 (192)
140 PF12718 Tropomyosin_1: Tropom 88.0 4.6 9.9E-05 33.8 8.8 41 118-158 12-52 (143)
141 PF12329 TMF_DNA_bd: TATA elem 88.0 7.1 0.00015 29.3 9.0 60 114-173 13-72 (74)
142 TIGR02209 ftsL_broad cell divi 88.0 4.5 9.8E-05 29.8 7.9 45 127-172 24-68 (85)
143 PF14282 FlxA: FlxA-like prote 88.0 3.4 7.3E-05 32.8 7.7 55 119-173 18-76 (106)
144 PF14662 CCDC155: Coiled-coil 87.9 4.2 9.2E-05 36.2 8.9 60 114-173 54-113 (193)
145 PRK10803 tol-pal system protei 87.7 2.1 4.6E-05 38.9 7.1 49 122-170 56-104 (263)
146 TIGR03752 conj_TIGR03752 integ 87.6 2.6 5.7E-05 42.0 8.2 36 120-155 59-94 (472)
147 KOG4196 bZIP transcription fac 87.6 4.2 9.1E-05 34.3 8.2 43 130-172 77-119 (135)
148 COG4942 Membrane-bound metallo 87.6 8 0.00017 38.1 11.4 18 83-100 110-127 (420)
149 PHA02562 46 endonuclease subun 87.5 3.3 7.3E-05 40.1 8.9 13 89-101 310-322 (562)
150 KOG0250 DNA repair protein RAD 87.5 6.1 0.00013 42.9 11.3 88 84-174 371-462 (1074)
151 COG1730 GIM5 Predicted prefold 87.4 2.8 6E-05 35.6 7.2 46 115-163 92-137 (145)
152 PF07716 bZIP_2: Basic region 87.4 6.9 0.00015 27.2 8.1 29 120-148 25-53 (54)
153 TIGR00606 rad50 rad50. This fa 87.3 4.5 9.7E-05 44.2 10.5 83 84-170 849-931 (1311)
154 PF07888 CALCOCO1: Calcium bin 87.2 3.7 8.1E-05 41.6 9.1 8 32-39 54-61 (546)
155 COG4942 Membrane-bound metallo 87.2 6 0.00013 39.0 10.3 17 85-101 38-54 (420)
156 PF04156 IncA: IncA protein; 87.1 5.8 0.00013 33.4 9.1 85 82-173 85-169 (191)
157 KOG3650 Predicted coiled-coil 87.0 2.9 6.3E-05 34.1 6.7 37 131-167 67-103 (120)
158 PF05266 DUF724: Protein of un 86.9 5.1 0.00011 35.1 8.9 15 157-171 161-175 (190)
159 KOG0946 ER-Golgi vesicle-tethe 86.8 3.3 7.2E-05 43.9 8.7 55 120-174 664-718 (970)
160 PRK14127 cell division protein 86.8 4.5 9.7E-05 32.9 7.8 29 145-173 41-69 (109)
161 PTZ00454 26S protease regulato 86.5 1.9 4.1E-05 41.4 6.5 52 118-169 13-64 (398)
162 COG4026 Uncharacterized protei 86.5 10 0.00022 35.0 10.8 95 78-173 101-202 (290)
163 PF06632 XRCC4: DNA double-str 86.5 3.7 7.9E-05 39.2 8.3 37 120-156 144-180 (342)
164 smart00787 Spc7 Spc7 kinetocho 86.4 4 8.6E-05 38.3 8.4 12 90-101 163-174 (312)
165 PRK00888 ftsB cell division pr 86.3 2.9 6.2E-05 33.3 6.4 34 136-169 29-62 (105)
166 PF15070 GOLGA2L5: Putative go 86.1 3.7 7.9E-05 42.0 8.6 45 129-173 17-61 (617)
167 PF08614 ATG16: Autophagy prot 86.1 7.9 0.00017 33.3 9.5 48 122-169 132-179 (194)
168 KOG4343 bZIP transcription fac 86.0 0.96 2.1E-05 45.8 4.3 31 139-169 307-337 (655)
169 PRK10803 tol-pal system protei 85.9 3.8 8.2E-05 37.2 7.8 42 132-173 59-100 (263)
170 PF13094 CENP-Q: CENP-Q, a CEN 85.7 9.4 0.0002 31.8 9.5 66 109-174 16-81 (160)
171 PF11544 Spc42p: Spindle pole 85.7 5.7 0.00012 30.6 7.4 49 125-173 3-51 (76)
172 PF09304 Cortex-I_coil: Cortex 85.7 6.1 0.00013 32.2 8.0 29 134-162 44-72 (107)
173 PF10211 Ax_dynein_light: Axon 85.6 17 0.00037 31.6 11.4 93 75-173 73-188 (189)
174 KOG4603 TBP-1 interacting prot 85.6 4.8 0.0001 35.7 7.9 53 122-174 88-142 (201)
175 KOG4005 Transcription factor X 85.6 4.3 9.4E-05 37.6 7.9 93 63-169 54-153 (292)
176 PRK05771 V-type ATP synthase s 85.5 3.8 8.3E-05 41.3 8.3 79 84-168 49-127 (646)
177 PRK03947 prefoldin subunit alp 85.4 4.1 8.9E-05 33.0 7.1 46 115-163 92-137 (140)
178 PF05377 FlaC_arch: Flagella a 85.4 3.4 7.3E-05 29.9 5.7 37 137-173 3-39 (55)
179 PF07889 DUF1664: Protein of u 85.4 5.3 0.00012 33.2 7.7 50 124-173 65-114 (126)
180 PF10224 DUF2205: Predicted co 85.3 6.2 0.00014 30.4 7.5 49 128-176 17-65 (80)
181 PRK02224 chromosome segregatio 85.2 9.1 0.0002 39.5 11.0 23 148-170 377-399 (880)
182 PF15397 DUF4618: Domain of un 85.0 4.4 9.5E-05 37.5 7.8 83 88-172 141-224 (258)
183 TIGR00606 rad50 rad50. This fa 85.0 7.1 0.00015 42.8 10.5 85 85-173 991-1086(1311)
184 TIGR01554 major_cap_HK97 phage 84.9 3.7 7.9E-05 38.5 7.4 58 87-148 5-62 (378)
185 PF05103 DivIVA: DivIVA protei 84.9 0.74 1.6E-05 36.4 2.4 47 117-163 22-68 (131)
186 PF05266 DUF724: Protein of un 84.8 7.1 0.00015 34.2 8.7 25 149-173 160-184 (190)
187 PF06810 Phage_GP20: Phage min 84.8 5 0.00011 34.0 7.5 37 122-158 29-68 (155)
188 PF10473 CENP-F_leu_zip: Leuci 84.7 10 0.00022 32.0 9.3 78 87-167 19-99 (140)
189 PRK04406 hypothetical protein; 84.7 6.3 0.00014 29.8 7.2 49 120-168 11-59 (75)
190 KOG3582 Mlx interactors and re 84.7 0.43 9.3E-06 49.5 1.2 80 74-154 650-733 (856)
191 KOG0249 LAR-interacting protei 84.6 5.5 0.00012 41.9 9.0 45 131-175 213-257 (916)
192 COG2919 Septum formation initi 84.5 6.3 0.00014 31.7 7.7 69 80-156 17-86 (117)
193 PF06103 DUF948: Bacterial pro 84.4 14 0.00031 27.7 9.2 35 122-156 21-55 (90)
194 PF04102 SlyX: SlyX; InterPro 84.4 6.2 0.00013 29.0 7.0 51 120-170 4-54 (69)
195 PF02403 Seryl_tRNA_N: Seryl-t 84.3 7.9 0.00017 29.9 7.9 55 119-173 42-99 (108)
196 KOG4797 Transcriptional regula 84.0 5 0.00011 33.1 6.8 32 132-163 65-96 (123)
197 PF13851 GAS: Growth-arrest sp 83.9 12 0.00025 32.9 9.7 47 109-156 83-129 (201)
198 TIGR02209 ftsL_broad cell divi 83.8 3.5 7.6E-05 30.4 5.5 33 123-155 27-59 (85)
199 PRK02119 hypothetical protein; 83.7 9.3 0.0002 28.6 7.8 53 116-168 5-57 (73)
200 PF00038 Filament: Intermediat 83.6 25 0.00054 31.7 12.0 18 122-139 56-73 (312)
201 PF09744 Jnk-SapK_ap_N: JNK_SA 83.6 11 0.00024 32.3 9.2 50 120-169 89-138 (158)
202 PF01166 TSC22: TSC-22/dip/bun 83.6 1.3 2.8E-05 32.6 2.9 29 141-169 14-42 (59)
203 PRK14011 prefoldin subunit alp 83.5 7.9 0.00017 32.7 8.1 52 115-172 86-137 (144)
204 PF07798 DUF1640: Protein of u 83.5 12 0.00026 31.8 9.4 12 90-101 56-67 (177)
205 PF03962 Mnd1: Mnd1 family; I 83.4 4.8 0.0001 35.0 7.0 14 159-172 114-127 (188)
206 KOG3898 Transcription factor N 83.3 0.82 1.8E-05 41.6 2.3 52 75-126 72-124 (254)
207 PF05565 Sipho_Gp157: Siphovir 83.2 27 0.00058 29.5 11.3 81 89-173 5-86 (162)
208 TIGR01834 PHA_synth_III_E poly 83.1 5.8 0.00013 37.7 7.9 59 112-170 255-318 (320)
209 PRK03992 proteasome-activating 83.0 4.5 9.8E-05 38.4 7.3 49 123-178 4-52 (389)
210 KOG3433 Protein involved in me 83.0 8.6 0.00019 34.3 8.4 50 96-146 47-107 (203)
211 PRK04325 hypothetical protein; 82.9 6.8 0.00015 29.4 6.8 49 120-168 9-57 (74)
212 PF07200 Mod_r: Modifier of ru 82.9 7.3 0.00016 31.8 7.6 51 122-172 29-79 (150)
213 PF04012 PspA_IM30: PspA/IM30 82.8 27 0.00058 30.2 11.5 59 111-169 82-140 (221)
214 PF06103 DUF948: Bacterial pro 82.7 15 0.00033 27.6 8.7 54 116-169 22-75 (90)
215 KOG4196 bZIP transcription fac 82.7 6.9 0.00015 33.0 7.3 30 144-173 77-106 (135)
216 PF07888 CALCOCO1: Calcium bin 82.6 8.9 0.00019 38.9 9.4 30 144-173 202-231 (546)
217 PRK03992 proteasome-activating 82.6 4.7 0.0001 38.3 7.2 44 119-162 7-50 (389)
218 PF06785 UPF0242: Uncharacteri 82.5 7.2 0.00016 37.8 8.3 53 114-166 121-173 (401)
219 PF14988 DUF4515: Domain of un 82.5 10 0.00022 33.6 8.8 47 124-170 153-199 (206)
220 KOG4360 Uncharacterized coiled 82.4 12 0.00027 38.0 10.2 36 122-157 228-263 (596)
221 PF10018 Med4: Vitamin-D-recep 82.4 29 0.00062 29.9 11.4 40 121-160 23-62 (188)
222 COG3937 Uncharacterized conser 82.4 9.3 0.0002 31.2 7.7 58 115-172 41-107 (108)
223 PF10458 Val_tRNA-synt_C: Valy 82.3 11 0.00025 27.2 7.6 21 154-174 45-65 (66)
224 COG0216 PrfA Protein chain rel 82.3 17 0.00036 35.2 10.6 90 88-178 10-106 (363)
225 KOG0979 Structural maintenance 82.1 9.2 0.0002 41.4 9.7 83 77-173 621-703 (1072)
226 PF10234 Cluap1: Clusterin-ass 82.1 12 0.00027 34.7 9.5 56 118-173 174-236 (267)
227 PF12709 Kinetocho_Slk19: Cent 81.9 6 0.00013 31.1 6.3 20 143-162 51-70 (87)
228 PF04880 NUDE_C: NUDE protein, 81.9 1.8 4E-05 37.5 3.8 40 114-157 8-47 (166)
229 KOG0612 Rho-associated, coiled 81.8 40 0.00087 37.5 14.3 9 29-37 395-403 (1317)
230 PF15070 GOLGA2L5: Putative go 81.8 7.2 0.00016 40.0 8.6 56 120-175 15-70 (617)
231 TIGR01069 mutS2 MutS2 family p 81.8 8.6 0.00019 40.2 9.3 12 114-125 498-509 (771)
232 COG1256 FlgK Flagellar hook-as 81.8 13 0.00029 37.6 10.3 71 84-155 107-177 (552)
233 COG1579 Zn-ribbon protein, pos 81.8 9.8 0.00021 34.8 8.6 53 119-171 30-82 (239)
234 PF04325 DUF465: Protein of un 81.7 7 0.00015 26.8 6.0 19 151-169 30-48 (49)
235 KOG0995 Centromere-associated 81.7 6 0.00013 40.3 7.8 28 143-170 334-361 (581)
236 KOG0977 Nuclear envelope prote 81.6 9.8 0.00021 38.7 9.3 12 90-101 118-129 (546)
237 PRK10869 recombination and rep 81.5 15 0.00033 36.8 10.6 87 85-178 296-390 (553)
238 PF12718 Tropomyosin_1: Tropom 81.4 9.1 0.0002 32.0 7.7 15 127-141 42-56 (143)
239 PF07334 IFP_35_N: Interferon- 81.4 2 4.4E-05 32.9 3.5 25 151-175 3-27 (76)
240 KOG3559 Transcriptional regula 81.4 1.7 3.7E-05 43.1 3.8 43 82-124 8-52 (598)
241 KOG4395 Transcription factor A 81.3 2.5 5.4E-05 39.3 4.6 52 75-126 174-226 (285)
242 PF14282 FlxA: FlxA-like prote 81.3 7.2 0.00016 30.9 6.7 60 112-171 18-81 (106)
243 PF04899 MbeD_MobD: MbeD/MobD 81.3 11 0.00025 28.3 7.4 56 123-178 6-65 (70)
244 PF04728 LPP: Lipoprotein leuc 81.3 12 0.00027 27.2 7.3 47 127-173 3-49 (56)
245 KOG1853 LIS1-interacting prote 81.2 9.3 0.0002 35.9 8.3 55 115-169 54-112 (333)
246 KOG0982 Centrosomal protein Nu 81.2 7.7 0.00017 38.6 8.2 45 127-171 304-348 (502)
247 TIGR02168 SMC_prok_B chromosom 81.1 17 0.00037 37.7 11.1 48 120-167 440-487 (1179)
248 PF13747 DUF4164: Domain of un 81.1 9.6 0.00021 29.6 7.2 16 121-136 9-24 (89)
249 PF02996 Prefoldin: Prefoldin 81.0 6.9 0.00015 30.4 6.5 42 115-159 75-116 (120)
250 PRK05431 seryl-tRNA synthetase 80.9 8.8 0.00019 37.2 8.5 51 123-173 38-98 (425)
251 PF10146 zf-C4H2: Zinc finger- 80.9 15 0.00032 33.3 9.4 61 113-173 32-99 (230)
252 COG2919 Septum formation initi 80.8 9.2 0.0002 30.8 7.3 56 115-170 31-86 (117)
253 PF15290 Syntaphilin: Golgi-lo 80.8 9.3 0.0002 36.1 8.2 13 163-175 157-169 (305)
254 PF05837 CENP-H: Centromere pr 80.7 15 0.00032 29.2 8.3 53 120-173 17-69 (106)
255 TIGR03185 DNA_S_dndD DNA sulfu 80.7 23 0.00051 35.8 11.7 65 87-156 400-464 (650)
256 PRK03947 prefoldin subunit alp 80.6 25 0.00054 28.5 9.9 44 126-169 93-136 (140)
257 KOG0977 Nuclear envelope prote 80.5 7.6 0.00016 39.4 8.1 36 139-174 153-188 (546)
258 PF08826 DMPK_coil: DMPK coile 80.5 9.2 0.0002 28.1 6.5 43 131-173 15-57 (61)
259 KOG3156 Uncharacterized membra 80.3 8.7 0.00019 34.9 7.6 43 131-173 98-141 (220)
260 PRK02224 chromosome segregatio 80.3 19 0.00041 37.2 11.1 22 115-136 532-553 (880)
261 KOG1962 B-cell receptor-associ 80.1 6.5 0.00014 35.5 6.8 37 129-165 174-210 (216)
262 PF13870 DUF4201: Domain of un 80.0 13 0.00029 31.3 8.4 80 91-177 62-141 (177)
263 PF15294 Leu_zip: Leucine zipp 79.9 6.2 0.00013 36.9 6.8 58 111-169 117-174 (278)
264 PF02388 FemAB: FemAB family; 79.9 11 0.00024 36.0 8.8 78 92-173 218-298 (406)
265 PF13815 Dzip-like_N: Iguana/D 79.8 19 0.00041 28.8 8.8 92 80-174 18-113 (118)
266 PF06120 Phage_HK97_TLTM: Tail 79.7 11 0.00023 35.6 8.3 55 117-171 49-104 (301)
267 PF14257 DUF4349: Domain of un 79.7 14 0.0003 33.0 8.8 66 108-173 127-194 (262)
268 PRK02793 phi X174 lysis protei 79.7 12 0.00026 28.0 7.1 51 119-169 7-57 (72)
269 KOG0946 ER-Golgi vesicle-tethe 79.5 13 0.00029 39.7 9.6 72 108-179 638-716 (970)
270 PRK04654 sec-independent trans 79.0 17 0.00038 32.8 9.1 18 119-136 33-50 (214)
271 PF01166 TSC22: TSC-22/dip/bun 78.9 3.4 7.4E-05 30.4 3.8 27 136-162 16-42 (59)
272 TIGR00414 serS seryl-tRNA synt 78.8 8.1 0.00018 37.4 7.5 50 123-172 40-93 (418)
273 PF04012 PspA_IM30: PspA/IM30 78.8 20 0.00044 31.0 9.3 57 117-173 95-151 (221)
274 TIGR02492 flgK_ends flagellar 78.8 22 0.00047 33.0 10.1 69 88-157 107-175 (322)
275 PF11068 YlqD: YlqD protein; 78.8 32 0.0007 28.6 10.1 68 108-175 15-87 (131)
276 PRK05771 V-type ATP synthase s 78.5 7.4 0.00016 39.3 7.4 37 139-175 91-127 (646)
277 PF09730 BicD: Microtubule-ass 78.5 11 0.00023 39.5 8.7 84 86-169 28-118 (717)
278 PRK00295 hypothetical protein; 78.5 18 0.00038 26.8 7.6 49 120-168 5-53 (68)
279 KOG3192 Mitochondrial J-type c 78.4 3.2 7E-05 36.1 4.1 66 88-169 59-126 (168)
280 TIGR02168 SMC_prok_B chromosom 78.4 27 0.00058 36.3 11.5 8 90-97 689-696 (1179)
281 TIGR01069 mutS2 MutS2 family p 78.2 11 0.00023 39.6 8.6 15 158-172 575-589 (771)
282 PF10205 KLRAQ: Predicted coil 78.1 26 0.00057 28.3 9.0 48 127-174 26-73 (102)
283 PF14645 Chibby: Chibby family 78.1 7.6 0.00016 31.6 6.0 44 128-171 72-115 (116)
284 PF12777 MT: Microtubule-bindi 78.0 16 0.00035 34.2 9.0 42 115-156 230-271 (344)
285 PRK03918 chromosome segregatio 77.8 20 0.00042 36.9 10.3 13 89-101 173-185 (880)
286 KOG1029 Endocytic adaptor prot 77.7 12 0.00027 39.9 8.7 38 137-174 482-519 (1118)
287 PRK00736 hypothetical protein; 77.6 18 0.0004 26.6 7.5 50 120-169 5-54 (68)
288 PF00769 ERM: Ezrin/radixin/mo 77.5 12 0.00026 33.8 7.8 52 122-173 63-114 (246)
289 PF10392 COG5: Golgi transport 77.5 21 0.00045 29.0 8.5 78 89-169 37-114 (132)
290 KOG3647 Predicted coiled-coil 77.4 9.3 0.0002 36.1 7.1 58 125-182 110-168 (338)
291 PF09726 Macoilin: Transmembra 77.4 22 0.00047 37.1 10.5 35 121-155 546-580 (697)
292 PF05103 DivIVA: DivIVA protei 77.4 3.2 6.8E-05 32.8 3.6 44 128-171 26-69 (131)
293 PF05008 V-SNARE: Vesicle tran 77.4 20 0.00042 26.2 7.6 35 139-173 37-72 (79)
294 PF12711 Kinesin-relat_1: Kine 77.3 16 0.00034 28.7 7.3 10 92-101 3-12 (86)
295 PF09789 DUF2353: Uncharacteri 77.1 13 0.00027 35.5 8.1 44 130-173 136-179 (319)
296 PRK04778 septation ring format 77.1 14 0.00031 37.0 8.8 62 115-176 378-439 (569)
297 KOG0995 Centromere-associated 77.0 24 0.00053 36.1 10.4 9 11-19 137-145 (581)
298 cd00890 Prefoldin Prefoldin is 76.9 11 0.00025 29.3 6.7 39 116-157 86-124 (129)
299 PF12709 Kinetocho_Slk19: Cent 76.9 26 0.00056 27.6 8.4 49 110-160 34-82 (87)
300 KOG0804 Cytoplasmic Zn-finger 76.9 14 0.00031 36.9 8.6 21 153-173 426-446 (493)
301 PF12777 MT: Microtubule-bindi 76.8 15 0.00032 34.4 8.4 51 123-173 231-281 (344)
302 KOG0971 Microtubule-associated 76.8 11 0.00024 40.8 8.2 18 122-139 370-387 (1243)
303 PF03961 DUF342: Protein of un 76.7 17 0.00038 35.1 9.1 33 142-174 376-408 (451)
304 PF03954 Lectin_N: Hepatic lec 76.6 7 0.00015 33.1 5.6 51 123-173 58-112 (138)
305 KOG2391 Vacuolar sorting prote 76.5 13 0.00029 35.8 8.1 37 133-169 238-274 (365)
306 PF10482 CtIP_N: Tumour-suppre 76.3 10 0.00023 31.4 6.4 75 78-164 44-119 (120)
307 PF12711 Kinesin-relat_1: Kine 76.3 33 0.00072 26.9 8.8 11 157-167 53-63 (86)
308 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.2 32 0.00068 28.0 9.2 19 132-150 64-82 (132)
309 KOG3584 cAMP response element 76.2 2.6 5.7E-05 39.9 3.2 29 120-148 312-340 (348)
310 PF00769 ERM: Ezrin/radixin/mo 76.1 12 0.00027 33.7 7.5 49 125-173 80-128 (246)
311 PF04420 CHD5: CHD5-like prote 76.1 7.4 0.00016 32.9 5.7 22 117-138 37-58 (161)
312 PF13863 DUF4200: Domain of un 75.9 36 0.00079 26.7 9.5 31 143-173 76-106 (126)
313 PF14257 DUF4349: Domain of un 75.9 18 0.00039 32.3 8.4 66 115-180 127-194 (262)
314 TIGR02680 conserved hypothetic 75.8 17 0.00036 40.4 9.6 17 112-128 222-238 (1353)
315 PF10226 DUF2216: Uncharacteri 75.7 18 0.0004 32.3 8.2 43 113-155 41-83 (195)
316 PF14988 DUF4515: Domain of un 75.6 17 0.00037 32.2 8.0 51 118-168 154-204 (206)
317 TIGR03185 DNA_S_dndD DNA sulfu 75.5 14 0.0003 37.4 8.4 49 120-168 421-469 (650)
318 PRK15396 murein lipoprotein; P 75.5 19 0.0004 27.7 7.2 36 121-156 26-61 (78)
319 smart00340 HALZ homeobox assoc 75.5 9.6 0.00021 26.5 5.0 42 138-183 2-44 (44)
320 PF12999 PRKCSH-like: Glucosid 75.4 14 0.00031 32.4 7.4 7 55-61 104-110 (176)
321 KOG2751 Beclin-like protein [S 75.4 11 0.00024 37.4 7.3 25 127-151 183-207 (447)
322 PF03961 DUF342: Protein of un 75.3 18 0.00039 35.0 8.8 22 152-173 379-400 (451)
323 PRK00409 recombination and DNA 75.2 17 0.00036 38.1 9.1 11 163-173 585-595 (782)
324 PRK07739 flgK flagellar hook-a 75.1 30 0.00065 34.2 10.4 75 88-163 119-193 (507)
325 PF15619 Lebercilin: Ciliary p 75.1 41 0.0009 29.5 10.2 31 143-173 159-189 (194)
326 PLN02678 seryl-tRNA synthetase 75.0 19 0.00042 35.5 9.0 29 145-173 75-103 (448)
327 PF07407 Seadorna_VP6: Seadorn 75.0 5.1 0.00011 38.7 4.9 31 118-148 30-60 (420)
328 COG1340 Uncharacterized archae 74.9 23 0.00049 33.5 9.0 61 110-170 13-84 (294)
329 cd00584 Prefoldin_alpha Prefol 74.9 14 0.0003 29.4 6.7 40 115-157 85-124 (129)
330 COG1196 Smc Chromosome segrega 74.8 39 0.00085 36.7 12.0 33 137-169 880-912 (1163)
331 TIGR02977 phageshock_pspA phag 74.8 28 0.00062 30.5 9.2 49 124-172 103-151 (219)
332 PF04859 DUF641: Plant protein 74.5 14 0.0003 30.9 6.8 73 81-160 51-127 (131)
333 KOG0243 Kinesin-like protein [ 74.4 7.8 0.00017 42.0 6.5 27 106-132 397-423 (1041)
334 PF06785 UPF0242: Uncharacteri 74.3 22 0.00047 34.6 8.8 26 146-171 132-157 (401)
335 PF10883 DUF2681: Protein of u 74.2 19 0.00041 28.3 7.1 26 125-150 21-46 (87)
336 PF03233 Cauli_AT: Aphid trans 74.2 30 0.00064 30.2 8.9 49 90-142 85-133 (163)
337 PRK00846 hypothetical protein; 74.1 25 0.00054 27.0 7.5 50 119-168 12-61 (77)
338 PRK04863 mukB cell division pr 74.0 17 0.00038 40.9 9.3 88 84-172 948-1037(1486)
339 TIGR01005 eps_transp_fam exopo 74.0 41 0.00089 34.4 11.4 18 84-101 250-267 (754)
340 KOG2751 Beclin-like protein [S 73.6 9.2 0.0002 37.9 6.3 26 143-168 178-203 (447)
341 PF10779 XhlA: Haemolysin XhlA 73.3 25 0.00054 25.8 7.2 26 124-149 3-28 (71)
342 PRK14127 cell division protein 73.2 8.5 0.00018 31.2 5.1 33 116-148 33-65 (109)
343 PF04859 DUF641: Plant protein 73.1 13 0.00029 31.1 6.3 34 140-173 86-119 (131)
344 PF14389 Lzipper-MIP1: Leucine 73.1 34 0.00073 26.4 8.2 24 150-173 56-79 (88)
345 PF11853 DUF3373: Protein of u 73.0 5.9 0.00013 39.7 5.0 29 142-170 32-60 (489)
346 COG4467 Regulator of replicati 73.0 22 0.00048 29.2 7.4 53 109-165 1-53 (114)
347 cd00632 Prefoldin_beta Prefold 72.9 17 0.00038 28.2 6.7 37 131-167 67-103 (105)
348 TIGR01242 26Sp45 26S proteasom 72.9 9.3 0.0002 35.5 6.0 33 146-178 11-43 (364)
349 PF13118 DUF3972: Protein of u 72.9 35 0.00077 28.5 8.8 62 113-174 63-125 (126)
350 PF01763 Herpes_UL6: Herpesvir 72.8 11 0.00024 38.4 6.8 44 113-156 363-406 (557)
351 PLN02678 seryl-tRNA synthetase 72.6 31 0.00068 34.1 9.8 24 152-175 75-98 (448)
352 PF11544 Spc42p: Spindle pole 72.5 35 0.00075 26.3 8.0 53 117-169 2-54 (76)
353 PRK07191 flgK flagellar hook-a 72.5 33 0.00071 33.5 9.9 71 89-160 108-178 (456)
354 PF04999 FtsL: Cell division p 72.5 11 0.00025 28.6 5.5 14 129-142 37-50 (97)
355 PF03962 Mnd1: Mnd1 family; I 72.3 22 0.00048 30.9 7.9 12 90-101 81-92 (188)
356 TIGR00293 prefoldin, archaeal 72.3 15 0.00032 29.1 6.3 39 115-156 84-122 (126)
357 KOG0982 Centrosomal protein Nu 72.3 46 0.001 33.3 10.7 39 135-173 298-336 (502)
358 KOG3650 Predicted coiled-coil 72.2 9.1 0.0002 31.2 5.0 57 118-174 47-103 (120)
359 PF09738 DUF2051: Double stran 72.0 22 0.00047 33.5 8.2 50 124-173 116-172 (302)
360 PLN02320 seryl-tRNA synthetase 72.0 59 0.0013 32.8 11.6 29 145-173 134-162 (502)
361 PF05667 DUF812: Protein of un 71.9 43 0.00093 34.3 10.8 13 115-127 389-401 (594)
362 COG1792 MreC Cell shape-determ 71.7 14 0.0003 34.2 6.7 37 134-174 73-109 (284)
363 PRK05683 flgK flagellar hook-a 71.7 31 0.00067 35.8 9.9 75 89-164 108-182 (676)
364 PF08286 Spc24: Spc24 subunit 71.6 1.4 3E-05 35.4 0.2 39 134-172 6-44 (118)
365 PRK07521 flgK flagellar hook-a 71.4 33 0.00071 33.7 9.7 69 89-158 103-171 (483)
366 TIGR01242 26Sp45 26S proteasom 71.3 8.7 0.00019 35.7 5.4 36 134-169 6-41 (364)
367 PF13600 DUF4140: N-terminal d 71.1 8.9 0.00019 29.5 4.6 23 143-165 79-101 (104)
368 TIGR03545 conserved hypothetic 71.0 39 0.00085 34.3 10.3 42 131-175 216-257 (555)
369 COG1792 MreC Cell shape-determ 70.9 23 0.0005 32.7 8.0 49 117-169 63-111 (284)
370 PF09726 Macoilin: Transmembra 70.8 16 0.00035 38.0 7.7 11 125-135 423-433 (697)
371 PF05600 DUF773: Protein of un 70.8 30 0.00065 34.6 9.3 44 130-173 449-492 (507)
372 PRK10698 phage shock protein P 70.5 40 0.00087 30.0 9.2 55 119-173 98-152 (222)
373 PF13514 AAA_27: AAA domain 70.4 28 0.0006 37.6 9.6 66 108-173 145-213 (1111)
374 KOG1854 Mitochondrial inner me 70.3 48 0.001 34.5 10.7 48 81-133 283-338 (657)
375 TIGR00634 recN DNA repair prot 70.3 14 0.00031 36.7 7.0 54 110-164 145-198 (563)
376 COG2900 SlyX Uncharacterized p 70.3 46 0.001 25.4 9.1 52 124-175 5-56 (72)
377 PRK06665 flgK flagellar hook-a 70.2 40 0.00086 34.5 10.2 53 89-142 120-172 (627)
378 COG3352 FlaC Putative archaeal 70.2 73 0.0016 27.7 11.4 85 88-173 47-133 (157)
379 cd00632 Prefoldin_beta Prefold 69.9 50 0.0011 25.6 9.8 50 111-160 54-103 (105)
380 TIGR00634 recN DNA repair prot 69.9 42 0.00092 33.4 10.2 86 84-176 300-393 (563)
381 KOG0804 Cytoplasmic Zn-finger 69.7 65 0.0014 32.4 11.2 23 136-158 384-406 (493)
382 PF09787 Golgin_A5: Golgin sub 69.7 12 0.00026 37.0 6.3 23 145-167 278-300 (511)
383 PF05701 WEMBL: Weak chloropla 69.6 30 0.00064 34.5 9.0 15 159-173 341-355 (522)
384 PF11180 DUF2968: Protein of u 69.5 49 0.0011 29.5 9.4 33 144-176 150-182 (192)
385 PF10267 Tmemb_cc2: Predicted 69.5 39 0.00084 33.1 9.5 84 84-168 225-318 (395)
386 PRK11415 hypothetical protein; 69.5 23 0.00049 26.6 6.3 21 128-148 18-38 (74)
387 PF01920 Prefoldin_2: Prefoldi 69.4 16 0.00035 27.5 5.7 67 89-156 30-98 (106)
388 PF04999 FtsL: Cell division p 69.2 29 0.00064 26.3 7.1 30 123-152 38-67 (97)
389 PF04849 HAP1_N: HAP1 N-termin 69.2 26 0.00057 33.2 8.1 40 134-173 227-266 (306)
390 KOG3335 Predicted coiled-coil 69.1 21 0.00046 31.5 7.0 30 93-125 47-76 (181)
391 PLN03188 kinesin-12 family pro 68.9 33 0.00072 38.3 9.7 61 110-170 1145-1240(1320)
392 PRK08147 flgK flagellar hook-a 68.9 48 0.001 33.0 10.3 70 88-158 108-177 (547)
393 TIGR02338 gimC_beta prefoldin, 68.8 29 0.00062 27.3 7.2 37 119-155 66-102 (110)
394 COG3879 Uncharacterized protei 68.8 19 0.00042 33.2 6.9 43 124-166 54-96 (247)
395 PRK14160 heat shock protein Gr 68.8 21 0.00046 32.0 7.1 7 226-232 198-204 (211)
396 PF10883 DUF2681: Protein of u 68.7 55 0.0012 25.7 8.8 40 113-152 16-55 (87)
397 PF05701 WEMBL: Weak chloropla 68.5 33 0.00071 34.2 9.0 46 125-170 286-331 (522)
398 KOG0018 Structural maintenance 68.4 28 0.00061 38.2 8.9 92 80-173 654-750 (1141)
399 PRK05431 seryl-tRNA synthetase 68.4 36 0.00077 33.1 9.1 31 119-149 27-57 (425)
400 PF05164 ZapA: Cell division p 68.3 40 0.00086 24.7 7.5 37 87-127 27-63 (89)
401 KOG0964 Structural maintenance 68.2 40 0.00086 37.0 9.9 62 112-173 257-318 (1200)
402 PF02996 Prefoldin: Prefoldin 68.1 22 0.00049 27.5 6.4 45 125-169 75-119 (120)
403 PF03980 Nnf1: Nnf1 ; InterPr 67.9 14 0.00029 28.9 5.1 12 90-101 32-43 (109)
404 KOG4643 Uncharacterized coiled 67.8 32 0.0007 37.7 9.2 60 114-173 395-454 (1195)
405 PLN02320 seryl-tRNA synthetase 67.6 32 0.0007 34.6 8.8 25 152-176 134-158 (502)
406 PF10168 Nup88: Nuclear pore c 67.6 38 0.00083 35.4 9.6 55 111-165 537-603 (717)
407 TIGR00019 prfA peptide chain r 67.3 96 0.0021 30.0 11.6 88 88-176 10-103 (360)
408 KOG3915 Transcription regulato 67.2 32 0.00069 34.9 8.5 65 108-172 505-580 (641)
409 PF13600 DUF4140: N-terminal d 67.1 8.6 0.00019 29.5 3.8 27 145-171 74-100 (104)
410 PRK14161 heat shock protein Gr 67.1 23 0.00051 30.8 6.8 43 112-154 11-53 (178)
411 PF10498 IFT57: Intra-flagella 67.0 47 0.001 31.9 9.4 31 143-173 289-319 (359)
412 KOG4603 TBP-1 interacting prot 66.8 28 0.0006 31.0 7.2 45 114-161 97-143 (201)
413 PF15254 CCDC14: Coiled-coil d 66.5 83 0.0018 33.7 11.7 17 84-100 400-416 (861)
414 PF02050 FliJ: Flagellar FliJ 66.4 39 0.00084 25.0 7.2 87 84-172 11-97 (123)
415 PF10212 TTKRSYEDQ: Predicted 66.4 57 0.0012 33.1 10.2 69 80-158 408-479 (518)
416 PHA01750 hypothetical protein 66.4 56 0.0012 24.9 9.0 29 146-174 40-68 (75)
417 PF05791 Bacillus_HBL: Bacillu 66.3 61 0.0013 27.9 9.3 34 141-174 142-175 (184)
418 COG1842 PspA Phage shock prote 66.3 59 0.0013 29.3 9.5 59 112-170 84-142 (225)
419 PRK08471 flgK flagellar hook-a 66.3 52 0.0011 33.6 10.1 47 89-136 113-159 (613)
420 cd07596 BAR_SNX The Bin/Amphip 66.3 69 0.0015 26.5 9.4 9 159-167 174-182 (218)
421 PF05384 DegS: Sensor protein 66.2 62 0.0013 27.8 9.2 55 113-170 2-56 (159)
422 TIGR03007 pepcterm_ChnLen poly 66.2 37 0.00081 32.7 8.7 10 210-219 453-462 (498)
423 PF07407 Seadorna_VP6: Seadorn 66.0 22 0.00048 34.5 7.0 25 129-153 34-58 (420)
424 PF07246 Phlebovirus_NSM: Phle 66.0 23 0.00049 33.0 6.9 61 109-173 167-227 (264)
425 KOG1029 Endocytic adaptor prot 66.0 57 0.0012 35.2 10.3 51 110-160 528-582 (1118)
426 PRK10865 protein disaggregatio 66.0 69 0.0015 34.0 11.2 26 109-134 406-431 (857)
427 PHA02557 22 prohead core prote 65.9 67 0.0015 30.1 9.9 59 117-175 138-203 (271)
428 PF04849 HAP1_N: HAP1 N-termin 65.7 17 0.00036 34.5 6.1 31 121-151 161-191 (306)
429 KOG0976 Rho/Rac1-interacting s 65.6 59 0.0013 35.3 10.4 48 123-170 109-156 (1265)
430 PF08700 Vps51: Vps51/Vps67; 65.6 51 0.0011 24.1 8.2 25 115-139 21-45 (87)
431 PF09177 Syntaxin-6_N: Syntaxi 65.6 59 0.0013 24.9 10.4 78 89-174 16-96 (97)
432 KOG4001 Axonemal dynein light 65.5 34 0.00073 31.3 7.7 23 153-175 233-255 (259)
433 PF14645 Chibby: Chibby family 65.5 20 0.00044 29.2 5.8 43 122-164 73-115 (116)
434 PRK01156 chromosome segregatio 65.5 66 0.0014 33.6 10.9 43 115-157 676-718 (895)
435 PF07352 Phage_Mu_Gam: Bacteri 65.4 52 0.0011 27.2 8.4 54 115-174 5-58 (149)
436 PF04420 CHD5: CHD5-like prote 65.4 16 0.00034 30.9 5.4 42 131-172 37-90 (161)
437 PRK01156 chromosome segregatio 65.2 42 0.00091 35.0 9.4 26 144-169 214-239 (895)
438 KOG0161 Myosin class II heavy 65.1 34 0.00073 39.7 9.2 18 155-172 1519-1536(1930)
439 PRK04863 mukB cell division pr 64.8 38 0.00082 38.3 9.5 16 86-101 308-323 (1486)
440 PF05531 NPV_P10: Nucleopolyhe 64.7 62 0.0013 24.8 8.3 60 112-175 3-62 (75)
441 PF05622 HOOK: HOOK protein; 64.6 2.2 4.7E-05 43.7 0.0 67 108-174 289-358 (713)
442 KOG0837 Transcriptional activa 64.5 32 0.00069 32.3 7.5 38 136-173 229-266 (279)
443 PF08657 DASH_Spc34: DASH comp 64.5 47 0.001 30.6 8.6 40 139-178 178-217 (259)
444 KOG4643 Uncharacterized coiled 64.4 40 0.00086 37.0 9.1 26 113-138 495-520 (1195)
445 TIGR03513 GldL_gliding gliding 64.2 63 0.0014 29.0 9.1 61 116-176 130-193 (202)
446 TIGR00414 serS seryl-tRNA synt 64.2 46 0.001 32.3 8.9 54 120-173 44-101 (418)
447 TIGR02338 gimC_beta prefoldin, 64.2 27 0.00058 27.5 6.2 37 110-146 64-100 (110)
448 PF06698 DUF1192: Protein of u 64.2 11 0.00024 27.5 3.7 23 151-173 24-46 (59)
449 PF08286 Spc24: Spc24 subunit 64.0 2.4 5.2E-05 33.9 0.2 41 124-164 3-43 (118)
450 PRK14148 heat shock protein Gr 64.0 25 0.00053 31.2 6.5 36 134-169 40-75 (195)
451 PF00261 Tropomyosin: Tropomyo 64.0 77 0.0017 28.1 9.7 8 164-171 178-185 (237)
452 COG5493 Uncharacterized conser 64.0 78 0.0017 28.8 9.6 57 120-176 46-109 (231)
453 KOG0972 Huntingtin interacting 63.9 36 0.00078 32.7 7.9 20 164-183 344-363 (384)
454 PF10481 CENP-F_N: Cenp-F N-te 63.9 35 0.00075 32.3 7.7 28 111-138 9-36 (307)
455 PF07047 OPA3: Optic atrophy 3 63.9 49 0.0011 27.2 7.9 15 76-90 40-54 (134)
456 PRK14153 heat shock protein Gr 63.7 18 0.00039 32.0 5.6 7 226-232 174-180 (194)
457 PF06705 SF-assemblin: SF-asse 63.6 57 0.0012 29.0 8.9 13 81-93 51-63 (247)
458 PF07412 Geminin: Geminin; In 63.6 24 0.00053 31.6 6.4 47 120-166 107-157 (200)
459 PRK15396 murein lipoprotein; P 63.5 48 0.001 25.4 7.2 45 128-172 26-70 (78)
460 PF13747 DUF4164: Domain of un 63.5 61 0.0013 25.1 7.9 12 90-101 13-24 (89)
461 KOG1937 Uncharacterized conser 63.4 63 0.0014 32.6 9.7 25 118-142 291-315 (521)
462 PF07989 Microtub_assoc: Micro 63.3 63 0.0014 24.4 8.7 54 119-172 6-67 (75)
463 KOG2077 JNK/SAPK-associated pr 63.1 22 0.00047 36.9 6.7 18 125-142 327-344 (832)
464 cd07666 BAR_SNX7 The Bin/Amphi 63.0 52 0.0011 30.1 8.5 20 153-172 175-194 (243)
465 PF14523 Syntaxin_2: Syntaxin- 62.9 59 0.0013 24.4 7.7 13 89-101 7-19 (102)
466 PF09755 DUF2046: Uncharacteri 62.9 37 0.00081 32.3 7.8 20 152-171 81-100 (310)
467 TIGR02977 phageshock_pspA phag 62.8 1.1E+02 0.0023 26.9 11.5 60 114-173 86-145 (219)
468 KOG0994 Extracellular matrix g 62.6 59 0.0013 36.5 10.0 60 85-148 1201-1260(1758)
469 KOG4360 Uncharacterized coiled 62.5 86 0.0019 32.2 10.6 32 143-174 270-301 (596)
470 PF04871 Uso1_p115_C: Uso1 / p 62.5 55 0.0012 27.2 8.0 18 159-176 95-112 (136)
471 PF10458 Val_tRNA-synt_C: Valy 62.5 56 0.0012 23.5 7.3 46 122-167 6-65 (66)
472 PF10267 Tmemb_cc2: Predicted 62.5 39 0.00085 33.0 8.1 82 80-169 204-290 (395)
473 PF09730 BicD: Microtubule-ass 62.4 51 0.0011 34.7 9.4 54 120-173 34-87 (717)
474 PLN03229 acetyl-coenzyme A car 62.4 40 0.00086 35.7 8.5 14 160-173 647-660 (762)
475 KOG1103 Predicted coiled-coil 62.2 48 0.001 32.7 8.5 32 196-228 329-362 (561)
476 PF05600 DUF773: Protein of un 62.0 41 0.00089 33.7 8.4 55 119-173 431-485 (507)
477 PF05816 TelA: Toxic anion res 62.0 84 0.0018 29.4 10.0 60 109-171 69-132 (333)
478 PRK06945 flgK flagellar hook-a 61.9 60 0.0013 33.5 9.7 71 90-161 110-180 (651)
479 TIGR00020 prfB peptide chain r 61.9 91 0.002 30.2 10.4 81 88-168 26-112 (364)
480 PF15233 SYCE1: Synaptonemal c 61.9 85 0.0018 26.6 8.9 46 115-160 8-53 (134)
481 PRK09973 putative outer membra 61.7 45 0.00099 26.1 6.8 37 121-157 25-61 (85)
482 PF06160 EzrA: Septation ring 61.7 1.2E+02 0.0025 30.6 11.5 82 88-176 354-435 (560)
483 PF05557 MAD: Mitotic checkpoi 61.6 49 0.0011 34.1 9.0 57 119-175 502-586 (722)
484 KOG0971 Microtubule-associated 61.6 34 0.00075 37.2 8.0 34 138-171 407-440 (1243)
485 TIGR02231 conserved hypothetic 61.5 61 0.0013 31.9 9.4 47 115-161 126-172 (525)
486 PF07412 Geminin: Geminin; In 61.4 34 0.00074 30.7 6.9 34 115-155 120-153 (200)
487 PF09755 DUF2046: Uncharacteri 61.4 1.5E+02 0.0033 28.3 12.3 48 115-162 224-275 (310)
488 PF05700 BCAS2: Breast carcino 61.3 91 0.002 27.6 9.6 28 146-173 180-207 (221)
489 PRK10947 global DNA-binding tr 61.3 55 0.0012 27.4 7.8 62 117-178 6-72 (135)
490 TIGR01843 type_I_hlyD type I s 61.2 1.4E+02 0.0029 27.5 11.8 85 84-172 171-270 (423)
491 PRK10361 DNA recombination pro 61.1 68 0.0015 32.2 9.6 65 111-175 44-119 (475)
492 PF04645 DUF603: Protein of un 61.0 39 0.00083 29.9 7.0 50 122-171 107-161 (181)
493 PRK12714 flgK flagellar hook-a 60.9 69 0.0015 32.8 9.9 79 88-167 107-185 (624)
494 KOG3540 Beta amyloid precursor 60.9 1.2E+02 0.0026 31.1 11.1 89 79-178 255-343 (615)
495 PF08912 Rho_Binding: Rho Bind 60.9 49 0.0011 25.1 6.6 49 125-173 1-49 (69)
496 TIGR01843 type_I_hlyD type I s 60.8 48 0.001 30.5 8.1 52 123-174 126-177 (423)
497 PF08581 Tup_N: Tup N-terminal 60.6 74 0.0016 24.3 10.5 75 89-177 1-79 (79)
498 PRK00578 prfB peptide chain re 60.6 99 0.0022 29.9 10.4 85 88-174 26-111 (367)
499 PF01920 Prefoldin_2: Prefoldi 60.6 26 0.00057 26.3 5.4 46 108-153 57-102 (106)
500 PRK09343 prefoldin subunit bet 60.6 49 0.0011 26.7 7.2 55 94-153 57-111 (121)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.48 E-value=1.5e-13 Score=131.10 Aligned_cols=84 Identities=24% Similarity=0.346 Sum_probs=68.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGR--PPKMDKTVLLADAVQMVTQLRDEAQKLK---VSNEKLLGKINELKCE 149 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~--~~K~dKasIL~dAI~yIk~Lr~~vq~Lk---~~n~~L~~ei~~Lk~E 149 (235)
++..|+++|||||++||+||.+|+.|||.+. ..|.+|.+||..+++||+.|++..++.. ....+|+..++.|...
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~r 312 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALR 312 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 6889999999999999999999999995532 2478899999999999999998877433 3445677777777777
Q ss_pred HhHhHHHHH
Q 026702 150 KNELRDEKQ 158 (235)
Q Consensus 150 knELr~E~~ 158 (235)
+.||..+..
T Consensus 313 ieeLk~~~~ 321 (411)
T KOG1318|consen 313 IEELKSEAG 321 (411)
T ss_pred HHHHHHHHH
Confidence 777777744
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.45 E-value=6.4e-14 Score=97.62 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=46.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCCC---CCCCCchhhhHHHHHHHHHHHH
Q 026702 76 SGSKACREKMRRDRLNDRFMELASILDPG---RPPKMDKTVLLADAVQMVTQLR 126 (235)
Q Consensus 76 ~~~h~~~ERrRRdklNd~F~~Lr~lLpP~---~~~K~dKasIL~dAI~yIk~Lr 126 (235)
+.+|+.+||+||++||+.|.+|+.+||+. ...|+||++||..||+||++|+
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999764 3579999999999999999996
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.45 E-value=1.3e-13 Score=96.02 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=49.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCchhhhHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGR-PPKMDKTVLLADAVQMVTQLRDEA 129 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~-~~K~dKasIL~dAI~yIk~Lr~~v 129 (235)
.+.+|+.+||+||++||+.|.+|+.+||+.. ..|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999995532 489999999999999999999875
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.42 E-value=4.3e-13 Score=92.01 Aligned_cols=51 Identities=33% Similarity=0.503 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCchhhhHHHHHHHHHHHHHHHH
Q 026702 80 ACREKMRRDRLNDRFMELASILDPGR-PPKMDKTVLLADAVQMVTQLRDEAQ 130 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP~~-~~K~dKasIL~dAI~yIk~Lr~~vq 130 (235)
+.+||+||++||++|..|+++||+.. ..|.||++||..||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999996543 5799999999999999999998875
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.97 E-value=1.8e-09 Score=94.62 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCC-----CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRP-----PKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~-----~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
++..|...|++|||-||..+..|..+||-+.. .|++||.||.++|+||.+|..+..+.+++...|+.++..|+.=
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iI 141 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKII 141 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999944321 3899999999999999999999999999999999888887777
Q ss_pred HhHhH
Q 026702 150 KNELR 154 (235)
Q Consensus 150 knELr 154 (235)
+++..
T Consensus 142 k~~YE 146 (229)
T KOG1319|consen 142 KVNYE 146 (229)
T ss_pred HHHHH
Confidence 76643
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.85 E-value=2.2e-08 Score=89.82 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 73 CSASGSKACREKMRRDRLNDRFMELASILDPGRPPKMD-KTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 73 ~~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~d-KasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
.+.+.+|+.-||+||+.|.++|..|+..||.+...+.. .++||.+|++||+.|+.+.....+..+.|..+-..|+++.+
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999776544444 69999999999999998887777776666655555555555
Q ss_pred HhH
Q 026702 152 ELR 154 (235)
Q Consensus 152 ELr 154 (235)
+|.
T Consensus 137 ql~ 139 (232)
T KOG2483|consen 137 QLS 139 (232)
T ss_pred Hhc
Confidence 544
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.52 E-value=5.1e-08 Score=88.14 Aligned_cols=56 Identities=32% Similarity=0.408 Sum_probs=49.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCCC-------CCCCCchhhhHHHHHHHHHHHHHHHH
Q 026702 74 SASGSKACREKMRRDRLNDRFMELASILDPG-------RPPKMDKTVLLADAVQMVTQLRDEAQ 130 (235)
Q Consensus 74 ~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-------~~~K~dKasIL~dAI~yIk~Lr~~vq 130 (235)
.++..|-..|||||+|||+++.+|+.+| +. ...|++||-||.-|++|+++|+...+
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li-~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLI-PEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 5788899999999999999999999999 53 23799999999999999999997643
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.51 E-value=1.2e-07 Score=97.07 Aligned_cols=52 Identities=29% Similarity=0.434 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCchhhhHHHHHHHHHHHHHH
Q 026702 76 SGSKACREKMRRDRLNDRFMELASILDPGRP---PKMDKTVLLADAVQMVTQLRDE 128 (235)
Q Consensus 76 ~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~---~K~dKasIL~dAI~yIk~Lr~~ 128 (235)
+..|+..||||||++|..|.||++|| |.+. -|+||-+||..||..|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mv-p~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMV-PTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhh-hcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 77899999999999999999999999 7776 7999999999999999999885
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.46 E-value=1.4e-07 Score=97.51 Aligned_cols=77 Identities=30% Similarity=0.477 Sum_probs=67.8
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 62 TGSRKRVRSGSCSASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLL 140 (235)
Q Consensus 62 ~~~~KR~r~es~~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~ 140 (235)
..+.||-..+ ..++..|+..|||-|..|||+|.+|+.+| |+...|..|.+.|..||+||++|+...+.++.++..++
T Consensus 264 k~Pi~rl~~G-~~kRtAHN~IEKRYRsSINDKI~eLk~lV-~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 264 KKPIKRLLPG-GEKRTAHNIIEKRYRSSINDKIIELKDLV-PGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cCchhhcCCC-CcccchhhHHHHHhhcchhHHHHHHHHhc-CccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 3444555543 35799999999999999999999999999 66778999999999999999999999999999998887
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.07 E-value=3.2e-06 Score=78.90 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 76 SGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLL 140 (235)
Q Consensus 76 ~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~ 140 (235)
+.--++-||||=.-||..|..||++||-....|.+||+||..+.+||.+|.++..+|-..|..|.
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elK 125 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELK 125 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHH
Confidence 44557889999999999999999999433357999999999999999999998777766665554
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.91 E-value=2.7e-05 Score=71.14 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 026702 74 SASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVS 135 (235)
Q Consensus 74 ~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~ 135 (235)
.++..--+|||||=.|+|+.|..|..---++-++..-|+.||-.||+||..|+.-++++.+.
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56777789999999999999999987653544579999999999999999998877666543
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.54 E-value=0.00081 Score=51.70 Aligned_cols=60 Identities=25% Similarity=0.448 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+..||+-|.=|+-++.+|+..|..|.+++..++..+.+|+.|+..|+.|-..++..|.++
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999998888877763
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.54 E-value=8.7e-05 Score=65.41 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=52.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 026702 74 SASGSKACREKMRRDRLNDRFMELASILDPGR--PPKMDKTVLLADAVQMVTQLRDEAQKLKV 134 (235)
Q Consensus 74 ~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~--~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~ 134 (235)
..+..++.+||.|=..+|..|.+||..||+.- ..|.+|+.+|.-||.||+.|..-++.-+.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 35677788899999999999999999996654 46999999999999999999887665443
No 14
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.42 E-value=0.00053 Score=53.71 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC----CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPGR----PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~----~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
|-=-|.|||.+..|+.+||..+ ..|.+-+-+|.++|.||+.|+.+|..|.+.+..|.+.
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345889999999999995522 3466667799999999999999999999988888654
No 15
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.0017 Score=49.38 Aligned_cols=60 Identities=25% Similarity=0.456 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+..||+-|.-|+-++++|++.|..|..+..++......|+.|+..||.|-.-++..|.++
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999988887777763
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.38 E-value=0.0019 Score=48.63 Aligned_cols=54 Identities=30% Similarity=0.430 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
++.+.+|+.+++.+-.++..|+.++.+|+.+.++|.+++..|+.+.++|+++-.
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655555555555555555554433
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.88 E-value=0.014 Score=43.86 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
..||+-|.-|+.++.+|+.+|..|.++...|+.+...|+.|...-+..+.
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888899999999998888876666666666555555444433333
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.79 E-value=0.0093 Score=51.36 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDE---AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 115 L~dAI~yIk~Lr~~---vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|.+.|.|+..|+.. .+.++.+|..|+.++.+|+.+..+|+.|+..|+.+..-++...++
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999974 677888888888888888888888888888888888887776665
No 19
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.32 E-value=0.035 Score=42.82 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-------HHHHHHHHHHHHHHh
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQR-------LKNEKENLERQVKAL 174 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~-------Lk~e~e~Le~qlk~~ 174 (235)
.+.+.+|+.+|+..-+++.-|+.||++||.+.+.|.+|.+. |..+.+.|+++...+
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999776 555555555555443
No 20
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=96.27 E-value=0.045 Score=55.70 Aligned_cols=95 Identities=32% Similarity=0.429 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc--CCCC-CCCC---CCCC
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS--SQPA-FLPH---PPPV 187 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~--~~p~-~~ph---~~~~ 187 (235)
|+...-.-+.+|+.+-|+|..+.+++..+|++||+++..-+.|..+||.++|.-|.|++.+- .+|. |+|- |-.+
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~ 166 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQI 166 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccC
Confidence 33344467888999999999999999999999999999999999999999999999998842 2443 5554 3344
Q ss_pred CCCCCCCCcccCCcccccCCC
Q 026702 188 PAPFSAPGQVVGGKLVPLVGY 208 (235)
Q Consensus 188 p~~~~~~~qa~~~k~~p~~~y 208 (235)
|+-.-++.|+.+.-|--...|
T Consensus 167 pr~l~pp~~~~~c~lhncfdy 187 (907)
T KOG2264|consen 167 PRELEPPSQISPCQLHNCFDY 187 (907)
T ss_pred cccCCCccccCcccchhcccc
Confidence 544445556666554333344
No 21
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.27 E-value=0.0043 Score=61.65 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=44.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCchhhhHHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG--RPPKMDKTVLLADAVQMVTQLRDEAQK 131 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~--~~~K~dKasIL~dAI~yIk~Lr~~vq~ 131 (235)
+|..++.|||.|=..||+.|.||..+.--. ......|-.||..|+..|..|+++|.+
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 566677777777788999999999987221 123567899999999999999988864
No 22
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=96.05 E-value=0.12 Score=47.55 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCch-hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 76 SGSK-ACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 76 ~~~h-~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
+.+| ..-||.-|.||+.+..+=-+. -.|-+-..+-=..|++|.++.+.|..+|+.|++..+.|-.+.+||+
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQtaR--------DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQTAR--------DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445 678898999998887654332 1233333333356889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026702 155 DEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 155 ~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+...|+.++-.|.+|-..
T Consensus 132 ~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 132 SELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 9999999999888876443
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.00 E-value=0.041 Score=44.25 Aligned_cols=53 Identities=32% Similarity=0.470 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+|=..+..|++....|..++.+||.+..+|-+||+.|+-|.+.|...|.....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667777777777778888888888888888888888888888877544
No 24
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=95.92 E-value=0.049 Score=53.78 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHhHhHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC----------------------EKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~----------------------EknELr~E~~~Lk~e~e~Le~ql 171 (235)
-|..-|.-+++||.+++.|..+|+.|++|.+.|++ |..+|.+|.++|+..+..|+.||
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888888777766655 55555666666666666677777
Q ss_pred HHhc
Q 026702 172 KALS 175 (235)
Q Consensus 172 k~~~ 175 (235)
+.+.
T Consensus 140 ~~~~ 143 (472)
T TIGR03752 140 AGVL 143 (472)
T ss_pred hhcc
Confidence 6543
No 25
>smart00338 BRLZ basic region leucin zipper.
Probab=95.89 E-value=0.028 Score=40.38 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 83 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+|++|-++..+..+-+.-. .--.||.+|+.+++.|+.+|..|..++..|+.|+..|++++
T Consensus 4 ~k~~rR~~rNR~aA~~~R~---------------rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 4 EKRRRRRERNREAARRSRE---------------RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555443 12268888888888888888888877777777777666543
No 26
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.78 E-value=0.21 Score=49.45 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQ 177 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~ 177 (235)
..-|.+-+.++.+|+++++.|+.|.+.|.+...+++.+...|+.|+..|+.|++++...
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34455566667777777777777777777777888888888888888888888775443
No 27
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.77 E-value=0.038 Score=39.63 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
.||.+|+.++..|+.+|..|..++..|+.+...|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666665555555555554444444444433
No 28
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.53 E-value=0.056 Score=45.41 Aligned_cols=55 Identities=35% Similarity=0.528 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEK--NELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek--nELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
|.+|+.++..|+.++..|..+...|..+. .||+.+...|+.|++.|+..|..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988888887 67999999999999999999888654
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.49 E-value=0.084 Score=42.83 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+|=.++.+|++....|..++.+||.+..+|-+||..|+.|.+.|...|...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567777777777888888888888888888888888888888888875
No 30
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.42 E-value=0.11 Score=41.86 Aligned_cols=57 Identities=33% Similarity=0.424 Sum_probs=46.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|||-.|. +-|.+|.+++..|-.+...|+..+.+|-.|..+|+-||..|+..+..+++
T Consensus 1 Mdk~~l~----~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 1 MDKKELF----DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred CchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555554 55777888888888888888888888989999999999999988888877
No 31
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.05 E-value=0.19 Score=41.28 Aligned_cols=49 Identities=33% Similarity=0.529 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
+..|..|..++..++.++..|+.++..|..+++++++|...|-.+.+.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666677766666655555554444
No 32
>PRK11637 AmiB activator; Provisional
Probab=95.02 E-value=0.32 Score=46.48 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.-+.++...|..|..++..+......++.+++.+..++++++.+...++.+++.++.+|+.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777777777777777777777777777777777777777777666665
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=0.24 Score=37.82 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
.+.+.+|..+++..-.+..-|+.||++||.+.|.|..|.+.++...|.|+++
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 4667889999998888889999999999999998888888777777776653
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.91 E-value=0.41 Score=44.46 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhc
Q 026702 87 RDRLNDRFMELASIL 101 (235)
Q Consensus 87 RdklNd~F~~Lr~lL 101 (235)
...|...+..|+.+.
T Consensus 186 ~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 186 KAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 35
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.75 E-value=0.22 Score=45.67 Aligned_cols=54 Identities=28% Similarity=0.484 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+...+++.+.+++..+++.|..+..+|..+.++++++..+|..|+.+|+..++.
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666777777888888888888888888888888888888888776665
No 36
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.69 E-value=0.26 Score=48.87 Aligned_cols=60 Identities=8% Similarity=0.108 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-|.+.=.-..+|+++++.|+.+++.+..+..++...+++|.+|+..|+.+++-+..++..
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 344444567788888888888888777777788888899999999999998776666544
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.66 E-value=0.67 Score=41.09 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 85 MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
.|=.++...+.+|++-+ - . |-.+.-....+|++.++.+++....|+++...|+.|..+++.|+..|++++
T Consensus 93 ~rlp~le~el~~l~~~l-~----~-----~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 93 TRVPDLENQVKTLTDKL-N----N-----IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHH-H----H-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356778888888777 2 1 222233555555555555555555566666666666666666666666666
Q ss_pred HHHHHHHH
Q 026702 165 ENLERQVK 172 (235)
Q Consensus 165 e~Le~qlk 172 (235)
+.++..+.
T Consensus 163 ~~~~~~~~ 170 (206)
T PRK10884 163 DDKQRTII 170 (206)
T ss_pred HHHHHHHH
Confidence 66665444
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.63 E-value=0.23 Score=44.04 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.+|+.+..+|++|...++++.+.|+.++...
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 39
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=0.17 Score=46.81 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.-|++|+++++.++.+++.|..+|.++-.+.+++++|+..+++++++|+.+|+
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444444444444444444444444444444444444433
No 40
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=94.37 E-value=0.39 Score=36.05 Aligned_cols=55 Identities=31% Similarity=0.493 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.|.+|..+-++|....-++...|+.|+....++..+...|+..++.++.++..+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899888888888777778888888888888888888887777777776653
No 41
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.36 E-value=0.43 Score=35.55 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
-|.+|-...++|+.+|..|.++...+..|...|.+.+..-+..+|.+=..|++|.
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3555666677777777777777777777777777777777777777777777654
No 42
>PRK04406 hypothetical protein; Provisional
Probab=94.31 E-value=0.68 Score=35.03 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
.|..++..|+....-++.-|.+|...+-+.+.+...|+.++..|.++|+.+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666777777777766667777777777777777888888888888888765
No 43
>PRK02119 hypothetical protein; Provisional
Probab=94.30 E-value=0.71 Score=34.68 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+..+..++..|+....-++..|.+|...+-+.+.+...|+.++..|.++|+.+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666677777776666666777777777777778888888888888888865
No 44
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.19 E-value=0.41 Score=41.28 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 85 MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
+.|..+.+++..+..-+. .+-..+..--.-|..|+.++..|+..+..|.+++++...-...|+||...|..+.
T Consensus 88 r~~~el~~~L~~~~~~l~-------~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 88 RSKGELAQQLVELNDELQ-------ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666555551 1112333344556677777777777777777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 026702 165 ENLERQVKA 173 (235)
Q Consensus 165 e~Le~qlk~ 173 (235)
.-++.++..
T Consensus 161 ~~~e~k~~~ 169 (194)
T PF08614_consen 161 NMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.18 E-value=0.41 Score=35.69 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEK-------NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek-------nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|..|+..+..+...++..+.+++.|..|. .....++..|+.|++.|+++|+.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666655 35566777888888888887765
No 46
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=94.05 E-value=0.64 Score=40.45 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 026702 85 MRRDRLNDRFMELASIL 101 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lL 101 (235)
-|++=.|.+|.+|-.-|
T Consensus 59 vr~~ly~~~F~ELIRQV 75 (189)
T PF10211_consen 59 VREELYSQCFDELIRQV 75 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566677777776655
No 47
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.02 E-value=0.41 Score=38.88 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=43.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|||-.|. +-|.+|.+++..|-.+...|+..+.+|-.|...|+-||..|+..++++++
T Consensus 1 Mdk~elf----d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 1 MDKKEIF----DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred CchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4554443 45667788888888888888888888888888888888888888888744
No 48
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.92 E-value=0.19 Score=34.64 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 132 LKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
|+...+.|...-..|+.+.+-|..||..|++|+..|...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444455555555555555554433
No 49
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.90 E-value=0.76 Score=41.41 Aligned_cols=62 Identities=26% Similarity=0.273 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+=......=++.|+.++++.+.+.++++.+...|+.+.+++.+|-.+|..|-++|+.|+..
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 44445555667778888888888888888889999999999999999999999999999875
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.88 E-value=0.78 Score=42.99 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 85 MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
.|.+.|+..+..|+.+...- ..-..+.|..+-.-|+.+..++...+...+.++.+...++..+++..++++.+..+|
T Consensus 179 ~~~~~L~~e~~~L~~~~~e~---~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 179 DRKDALEEELRQLKQLEDEL---EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544220 111234444444444444433333333333333333333333333333333443333
Q ss_pred HHHHH
Q 026702 165 ENLER 169 (235)
Q Consensus 165 e~Le~ 169 (235)
..++.
T Consensus 256 ~~ae~ 260 (312)
T smart00787 256 AEAEK 260 (312)
T ss_pred HHHHH
Confidence 33333
No 51
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.79 E-value=0.099 Score=45.22 Aligned_cols=44 Identities=30% Similarity=0.438 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+++.+..+-=+.|.-|++|+ .||+.|+.+.|+||-|+..|+++|
T Consensus 4 D~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555554 445555555555555555555554
No 52
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=0.5 Score=43.71 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=54.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..++-+.|.++-.-.+.++.+++.|....+.++.++.+++.+.+++..|...|+.+|+.|+..|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888999999999999999999999888888888888888888888888887775544
No 53
>PRK00846 hypothetical protein; Provisional
Probab=93.60 E-value=0.99 Score=34.61 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
|..++..|+....-.+.-|.+|...+-+.+.....|+.++..|..+|+.+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555566555555555666777777777777788888888888888864
No 54
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.38 Score=46.08 Aligned_cols=47 Identities=32% Similarity=0.353 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 132 LKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
.+++.+.++.+...||+-.+||+.-++.|+.++++||||+..++.+-
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555666667677777777777777777777766654433
No 55
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.32 E-value=0.95 Score=38.27 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPAFLPHP 184 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~~~ph~ 184 (235)
.+.++.-+..+++....+..++..+..++.....+...+|++...++.+.+++..+...+...-+.+..|
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3567778888888888888889999999999999999999999999999999999988876655544443
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.28 E-value=0.36 Score=45.00 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 158 QRLKNEKENLERQVKA 173 (235)
Q Consensus 158 ~~Lk~e~e~Le~qlk~ 173 (235)
..|+.+++...++|..
T Consensus 116 ~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 57
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.25 E-value=0.86 Score=33.95 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
++.|..++..|=...+.|+.|...|+.+...++.|...|....+--...+++|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888888777788775
No 58
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=93.23 E-value=0.99 Score=41.30 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=10.1
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 147 KCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 147 k~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
...+.+|..||..|+.+++.|++++.
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444443333
No 59
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.22 E-value=0.061 Score=46.45 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=45.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRD 127 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~ 127 (235)
.+.-|+.+||+|=..||+.|..||.++|---+.|.+|.--|.-|.+||-.|-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 57779999999999999999999999943234699999999999999887643
No 60
>PRK11637 AmiB activator; Provisional
Probab=93.10 E-value=0.97 Score=43.19 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++..+..+++++..+...|+.+++.++.+|..
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444433
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.04 E-value=0.8 Score=42.57 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=5.3
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
|......|..++
T Consensus 168 L~~~~~~l~~~~ 179 (325)
T PF08317_consen 168 LDKQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 62
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=93.02 E-value=0.86 Score=32.58 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
....|+.++..|..+...|+.++..|+.++..|..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555555555556666666666666665554
No 63
>PRK00295 hypothetical protein; Provisional
Probab=92.92 E-value=1.4 Score=32.64 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
.++..|+....-++..|.+|...+-+.+.+...|+.++..|..+|+.+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555444455555556666666666677777777777777764
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.92 E-value=0.95 Score=43.84 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 86 RRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 86 RRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
++..+..++.+|+..+ . .+-+-|...++.+..|+.++++|+.....+.+++++|..+.+++..++..+..+++
T Consensus 331 ~~~~~~~~i~el~~~i---~----~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 331 EFNEQSKKLLELKNKI---S----TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777 1 11222777888888999999999888888888888888888888888777777766
Q ss_pred HHH
Q 026702 166 NLE 168 (235)
Q Consensus 166 ~Le 168 (235)
..+
T Consensus 404 ~~~ 406 (562)
T PHA02562 404 HRG 406 (562)
T ss_pred HHH
Confidence 543
No 65
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.90 E-value=0.87 Score=39.98 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.|..+=+..|+.|+.++..++..-......+.++..|...|.+....+..+++.|+.+|+.
T Consensus 20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3666778889999988888887666666666666777666777777777777777766654
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.82 E-value=0.55 Score=39.42 Aligned_cols=48 Identities=27% Similarity=0.434 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEK--QRLKNEKENLERQVK 172 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~--~~Lk~e~e~Le~qlk 172 (235)
|..++..|+.++..|..+++.|+.|...|..+. ..|..+++.|+.+++
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~ 126 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIE 126 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333331 233334444444333
No 67
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.81 E-value=0.077 Score=53.60 Aligned_cols=47 Identities=34% Similarity=0.340 Sum_probs=38.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCchhhhHHHHHHHHH
Q 026702 77 GSKACREKMRRDRLNDRFMELASILDP--GRPPKMDKTVLLADAVQMVT 123 (235)
Q Consensus 77 ~~h~~~ERrRRdklNd~F~~Lr~lLpP--~~~~K~dKasIL~dAI~yIk 123 (235)
.+|.---||-|||||.-+..|.++||= +.++|.||-|||.=++.|++
T Consensus 27 ~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 27 LTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 345555688999999999999999932 33579999999999999976
No 68
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.59 E-value=0.74 Score=33.93 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
|..++..|+....-++..|.+|...+-+...+...|+.++..|..+|+.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666667777777777777777777778877765
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.50 E-value=0.8 Score=40.35 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 026702 163 EKENLERQVKA 173 (235)
Q Consensus 163 e~e~Le~qlk~ 173 (235)
+++.++.++..
T Consensus 127 ~~~~~~~~l~~ 137 (302)
T PF10186_consen 127 ELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 70
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.47 E-value=2 Score=32.15 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+..++..|+....-++.-|.+|...+.+.+.+...|+.++..|..+|+.+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555566666666666666666667777777777777778888888888764
No 71
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=92.47 E-value=0.69 Score=37.84 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+=.++..|++....|..++..||+...+|-+||..|+-|.++|...|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34456677788888888889999999999999999999999999988865
No 72
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.39 E-value=0.45 Score=32.82 Aligned_cols=37 Identities=38% Similarity=0.477 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
|+..-..|+...+.|..+...|+.|++.|+.|...|+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444443
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.37 E-value=1.6 Score=35.87 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=39.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQR---LKNEKENLERQVKA 173 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~---Lk~e~e~Le~qlk~ 173 (235)
.-.+++..=-.-|+++..++..|+.++..|..+-+.+..|+-.|..++.. +..++..|+.+++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEE 79 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777788888888887777776666666666655555532 23344444444443
No 74
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=92.17 E-value=1.1 Score=43.99 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 026702 86 RRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDE---------------AQKLKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 86 RRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~---------------vq~Lk~~n~~L~~ei~~Lk~Ek 150 (235)
+...|.+.+.+|..-+. .-.++...+..-+.+|..+... +.++.+-.....+++.++..++
T Consensus 72 ~~~~l~~~l~~l~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 72 RLAELRKQIRELEAELR----DLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666551 2345667777777777777632 3445555566666777777777
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 151 NELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
.++..+...|+.++++|+++|..++.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777777777788888887776543
No 75
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.09 E-value=2.1 Score=40.55 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhh--------cCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 86 RRDRLNDRFMELASI--------LDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 86 RRdklNd~F~~Lr~l--------LpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
|...++....+|--. ++|.. .+.+=+.+|.++-+-.+.|+.++..|++....++.+++-|+...+..|
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~-~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEK-ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 446666666666521 21322 345556788999999999999999999988888888777777665444
No 76
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=91.94 E-value=1.4 Score=41.41 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-|.+|=+.-|. +.+.|..|++.|.++..+|++..+.|..||.+|+|-|..
T Consensus 238 AAtRYRqKkRa-------e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 238 AATRYRQKKRA-------EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777443333 334455556666666667777777777777777776554
No 77
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.84 E-value=1.1 Score=38.87 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
...+.|+.+.+.|+.++..|+.+++.|..|...|..+...++.+-+-|-.-
T Consensus 97 ~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 97 PSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777766666666665555443
No 78
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=91.74 E-value=1.2 Score=35.75 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
++.=+|+|+-..++ .|...+..|+++++.+..+..+|+.+...++.++..|+.++
T Consensus 63 LaQl~ieYLl~~q~---~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 63 LAQLSIEYLLHCQE---YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556777665554 34444556666666666666666666666666666666554
No 79
>smart00338 BRLZ basic region leucin zipper.
Probab=91.74 E-value=1.8 Score=30.89 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
..|+.++..|..+..+|+.+...|..++..|.+++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555544
No 80
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.69 E-value=0.88 Score=36.13 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKL--LGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L--~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.++..+++.++.+.+.| ..++..|+.+..+++-+...|.++++.+.+++.
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455566666666555 455666666666666666666666666555544
No 81
>PRK04325 hypothetical protein; Provisional
Probab=91.63 E-value=2.7 Score=31.61 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
.+..++..|+....-++..|.+|...+-+.+.+...|+.++..|..+|+.+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666655555555666666666666677777777777777777765
No 82
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.48 E-value=1.1 Score=39.90 Aligned_cols=8 Identities=38% Similarity=1.232 Sum_probs=4.3
Q ss_pred cccccCCC
Q 026702 212 SMWQFMPP 219 (235)
Q Consensus 212 ~mwq~~pp 219 (235)
.=|+|+|.
T Consensus 212 ~~W~~l~~ 219 (251)
T PF11932_consen 212 GQWQWLPD 219 (251)
T ss_pred CCCeECCH
Confidence 34666554
No 83
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.42 E-value=1.2 Score=40.62 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+..|=++.++.|..|++|+..++.++..|+.|...|+++..+|-.+++-+.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666777777777777777777777766643
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.38 E-value=3.5 Score=36.29 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026702 152 ELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++.++....+.....++.++..
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555565556666554
No 85
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.29 E-value=2.7 Score=32.44 Aligned_cols=44 Identities=32% Similarity=0.380 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
+|..++..|+..+..|-..|..++.|...|+.||..|+.=|..|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444333333
No 86
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=91.17 E-value=0.61 Score=32.52 Aligned_cols=29 Identities=38% Similarity=0.565 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
..+.+|..++.+|..++..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555566666666666655554
No 87
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=90.92 E-value=1.1 Score=32.25 Aligned_cols=42 Identities=36% Similarity=0.555 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+++.+...|+.+++.++.+..+|+.+...|+...+.++...+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344444444444444455555555555555445555555544
No 88
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.91 E-value=1.9 Score=32.12 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
.+-+.-.+.....|..+++.....+...-.+.++|++|+..|+.|++.+.
T Consensus 18 ~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 18 TRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344344444555555555555566666777777777777777766554
No 89
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.79 E-value=4.3 Score=36.68 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSN 136 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n 136 (235)
.+|.+++++.+.|..+.
T Consensus 32 ~~L~e~~kE~~~L~~Er 48 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQER 48 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 90
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.74 E-value=0.97 Score=32.33 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
|..|+.-..+|+.+-+.-..+....+.++.+|+.||..|++++++++
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666554444556678888999999999999888775
No 91
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.63 E-value=2.7 Score=35.79 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=8.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~ql 171 (235)
++|+.+...|+.|+++|+++|
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 92
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.56 E-value=1.7 Score=39.99 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.+|++||++|++++.+|+.+.+. ..+.|+.|.++|++.|...
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence 34555666666655555333332 2223666666666666553
No 93
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=90.55 E-value=0.18 Score=52.13 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCchhhhHHHHHHHHHHHHH
Q 026702 80 ACREKMRRDRLNDRFMELASILDP--GRPPKMDKTVLLADAVQMVTQLRD 127 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP--~~~~K~dKasIL~dAI~yIk~Lr~ 127 (235)
..+-|-||.|=|+-|.+|..+||- +...-.|||||+-=||.|++ ||+
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk 99 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRK 99 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHH
Confidence 446789999999999999999942 12368999999999999987 443
No 94
>PRK00736 hypothetical protein; Provisional
Probab=90.54 E-value=3.8 Score=30.33 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+..|+....-++..|.+|...+-+-..+...|+.++..|..+|+.+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444555555555555666666667777776654
No 95
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=90.52 E-value=1.2 Score=40.72 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
.+++.++..|+.+|+.|+.+|..|++|...|++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666555555555554444
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=1 Score=46.14 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
+..-.+-|+.|++++++|+.+|..|+.++.+|++++.+|+.+..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888888888888877777777777766643
No 97
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.40 E-value=2.5 Score=37.66 Aligned_cols=12 Identities=33% Similarity=0.399 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQ 170 (235)
Q Consensus 159 ~Lk~e~e~Le~q 170 (235)
.++.++++|++|
T Consensus 81 ~q~~el~~L~~q 92 (251)
T PF11932_consen 81 SQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHH
Confidence 333333334333
No 98
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.30 E-value=2.5 Score=40.51 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC
Q 026702 160 LKNEKENLERQVKALSSQPAFLPH 183 (235)
Q Consensus 160 Lk~e~e~Le~qlk~~~~~p~~~ph 183 (235)
.|.-+.+|+++++.|...-|.+-|
T Consensus 333 IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 333 IKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHhhhhhheehh
Confidence 333444455566666655555444
No 99
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.24 E-value=2.5 Score=32.71 Aligned_cols=50 Identities=34% Similarity=0.529 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKC---EKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~---EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+|+.+++.|+.+...+..+|..++. +..+|..+...++.++..++.+++.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444 2345555555555555555555544
No 100
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.11 E-value=2.5 Score=33.51 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINEL--KCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~L--k~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+..|+..+...+.....++.+++.| +.+.+.|+-+...++.++..|+.+|+.++.
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445566666677777777777777 777778888888888888888888877654
No 101
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.04 E-value=1.3 Score=41.00 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-cCCCCCCC
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL-SSQPAFLP 182 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~-~~~p~~~p 182 (235)
+..++.+..+.+.++..+..|..+...|.....+-+.|+||.+..|+++ ++.|.||-
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3344444445555555555555555556666666777777777777775 55777663
No 102
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=90.03 E-value=1.5 Score=39.31 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+|.++|+.|++|+.+|+.+..++ ..|+.|.++|+..|..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQEL----EQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 33444444444444444444332 2456677777776665
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.00 E-value=1.3 Score=45.09 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
...-.-+.+|+.+++.|+.+.+.+..+++.|+.+..++.+|....+.+.++|+++++.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888899999999999999999999999999999999999999999998876
No 104
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.97 E-value=8.8 Score=31.52 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 026702 81 CREKMRRDRLNDRFMELASIL 101 (235)
Q Consensus 81 ~~ERrRRdklNd~F~~Lr~lL 101 (235)
.++...|+.+++.+..|++-+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~ 68 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDI 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 467788888888888887766
No 105
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.94 E-value=3.2 Score=35.01 Aligned_cols=39 Identities=36% Similarity=0.510 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++..|.+++..+..+.+.|..|...|+.+++.|.++++.
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555554443
No 106
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=89.94 E-value=2.2 Score=38.32 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
..=.-+.+..+.+|+++.++|++++..|+.+.. +.+++++|+.+|+.-
T Consensus 61 ~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~l 108 (276)
T PRK13922 61 VSGVFESLASLFDLREENEELKKELLELESRLQ----ELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 333444455566666777777777777666543 224455555555543
No 107
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.93 E-value=1.3 Score=40.25 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.+-.+||.=.+.-=-..|.++.+|++++.++..++..|+.|++.|+.+|..|-..+--|+.
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777777778899999999999999999999999999999999999888877654
No 108
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=89.87 E-value=2.4 Score=32.05 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
+++...++.+|+.+|=.|.-.|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~ 24 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIY 24 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555555556555544444433
No 109
>PRK09039 hypothetical protein; Validated
Probab=89.74 E-value=2.2 Score=40.35 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
++.+++-.-|..|+.+++.|+.++..|+.++..++.+..+.+.....|+.+++.
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777777766665555555555544444444443
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.66 E-value=1.8 Score=31.15 Aligned_cols=32 Identities=34% Similarity=0.308 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
+.+++.+++.|+.+++.|+.++++|+.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666665
No 111
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.53 E-value=2.8 Score=35.83 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=12.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 146 LKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++.|..+|++|....+.|++.|+.|.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 112
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.47 E-value=1.8 Score=46.68 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
..|.++.++++.+..+.++|+...+.++..|..++...+
T Consensus 418 ~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 418 NSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444444
No 113
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.42 E-value=1.4 Score=42.26 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPA 179 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~ 179 (235)
|+.+++.|+.+...++++...++.|+++++.+++.+..+|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPL 67 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 33334444444455555555566667777777777777774
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.40 E-value=3.5 Score=37.64 Aligned_cols=48 Identities=31% Similarity=0.304 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+..|..+++.+++...+|..++.+|..+..+|+++...|+.++.+++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444444444444444444444444444444333
No 115
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=1.4 Score=45.13 Aligned_cols=37 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+.++.|+.+++.|+.+++.|+.+|..|+.+..+++++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555444433
No 116
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.29 E-value=5 Score=40.78 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchhhh-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 83 EKMRRDRLNDRFMELASILDPGRPPKMDKTVL-LADAVQMVTQLRDEAQKLKV---SNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasI-L~dAI~yIk~Lr~~vq~Lk~---~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
+=.|=+++.+|+..|+.+- .|-.. +.+.++|..+++.+++.|.. ..+.|+.+++.++.+..+.-...+
T Consensus 295 Dp~~L~~ve~Rl~~L~~l~--------RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 295 DPNRLEEVEERLFALKSLA--------RKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred CHHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678888999998887 35555 89999999999999999886 356788888888888877777766
Q ss_pred HHHHHHH-----HHHHHHHHhcC
Q 026702 159 RLKNEKE-----NLERQVKALSS 176 (235)
Q Consensus 159 ~Lk~e~e-----~Le~qlk~~~~ 176 (235)
..+...- .+.++|+.+..
T Consensus 367 ~~R~~~A~~L~~~v~~eL~~L~M 389 (557)
T COG0497 367 AIRKKAAKELEKEVTAELKALAM 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 5555432 34556666554
No 117
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.27 E-value=2.5 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
+|+.+..++...+..++.|.++++++...++.-+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444443333
No 118
>PHA03011 hypothetical protein; Provisional
Probab=89.20 E-value=3.8 Score=33.49 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
...-++.+.+|+.+-..|-++..-+..+++.+..=..+--+|.--|++|++||+.++...
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 455567788888888888888888888888888888888888999999999999887653
No 119
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=89.17 E-value=3 Score=34.07 Aligned_cols=61 Identities=30% Similarity=0.336 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
.+-...+..|..++..|.+.|-.++.++.+++.+..++.++...|+.+-..++++++.++.
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555556667777777777777778888888888888888888888888888887643
No 120
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.05 E-value=6.5 Score=32.27 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 026702 90 LNDRFMELA 98 (235)
Q Consensus 90 lNd~F~~Lr 98 (235)
||..+..++
T Consensus 7 iN~~L~s~G 15 (151)
T PF11559_consen 7 INQQLLSRG 15 (151)
T ss_pred HHHHHHHCC
Confidence 555555443
No 121
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.91 E-value=3.5 Score=35.94 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.=|.+++..+.+=+.....|.+-|.-|++..+..+.....|.+|+..|..+.+++..+|..
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777776777788888888898888888888888888888888888887776653
No 122
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.91 E-value=6.3 Score=37.13 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 86 RRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 86 RRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
+|+.+|....++++-- .+...-+++|+.+++.|......+.+++.+|+.+.+++....+.|..+..
T Consensus 28 kR~El~~~~~~~~ekR--------------deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 28 KRDELRKEASELAEKR--------------DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666665544 13346677777888888888888888888888888887777777777777
Q ss_pred HHHHHHHH
Q 026702 166 NLERQVKA 173 (235)
Q Consensus 166 ~Le~qlk~ 173 (235)
.|......
T Consensus 94 ~l~e~~~~ 101 (294)
T COG1340 94 ELKEKRNE 101 (294)
T ss_pred HHHHHhhh
Confidence 66665553
No 123
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.84 E-value=4.3 Score=33.02 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINE 145 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~ 145 (235)
.++|.-|..|+.+.+.++.....|+.+...
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766666666655433
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.81 E-value=3.1 Score=37.01 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+...|-.++..|++||..|..+.+.|+.+.+.+
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 344455555566666666666666666655554
No 125
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.80 E-value=4.1 Score=29.61 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
|.+|-..|+.|.....+|..++..|+.+....++|-.+-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777766666666665555554443
No 126
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.78 E-value=1.6 Score=34.69 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.+|+++++.++++|++|+.+...|+.|++ .|+...+-+|.+...
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~-------~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEID-------DLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhCcHHHHHHHHHH
Confidence 344555566666655555555444444444 444444666666554
No 127
>PRK09039 hypothetical protein; Validated
Probab=88.58 E-value=3.3 Score=39.13 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+|+.|..+.+.|+.++..|..+++.++.+....+.+++.|++.|..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666665554
No 128
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.54 E-value=4 Score=34.41 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELK-------CEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk-------~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+.+++.++.....+.+++.++. .+..+++.+...++.+.+.++++++.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444 55555555555555555555555443
No 129
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=88.50 E-value=2.2 Score=31.23 Aligned_cols=58 Identities=12% Similarity=0.297 Sum_probs=35.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.+|-..|.++-.+|.+....+.+++-+...+.. .+++.+.......++++.+|+.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666666666666666666655555443321 4556666677777777777777765
No 130
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.49 E-value=7.1 Score=28.66 Aligned_cols=54 Identities=30% Similarity=0.424 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
|..=|+--..|+.++.+.+..|-.+....++-.....+|..+...|+.+++.++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555566666666666666666665555555556665555555555543
No 131
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.49 E-value=3.8 Score=38.27 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 026702 166 NLERQVKA 173 (235)
Q Consensus 166 ~Le~qlk~ 173 (235)
.|+.|+..
T Consensus 117 sl~~q~~~ 124 (314)
T PF04111_consen 117 SLKNQYEY 124 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 132
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.34 E-value=3 Score=37.69 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKI 143 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei 143 (235)
+..+-.-++.++..++.|..+...|+...
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~ 239 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKN 239 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccch
Confidence 33344444444444444444444333333
No 133
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=88.34 E-value=5.5 Score=36.18 Aligned_cols=85 Identities=20% Similarity=0.379 Sum_probs=45.6
Q ss_pred CchhHHHHHHHHHHHHHHHH-----------------HHhhcCCCCC-----------CCCchhhhHHHHHHHHHHHHHH
Q 026702 77 GSKACREKMRRDRLNDRFME-----------------LASILDPGRP-----------PKMDKTVLLADAVQMVTQLRDE 128 (235)
Q Consensus 77 ~~h~~~ERrRRdklNd~F~~-----------------Lr~lLpP~~~-----------~K~dKasIL~dAI~yIk~Lr~~ 128 (235)
.......++||..|-+.|.. |++-. -+.. +++-.-=+|.+++ ..|+..
T Consensus 141 ka~~~~~~~rR~~i~e~I~~~~~d~~de~~~~wE~aQ~rkg~-~~~~~~~~~~~~~~ip~~tpLP~L~~~~---~rL~~~ 216 (254)
T PF15458_consen 141 KAEREQKRRRREEIEEAINDDDDDSEDEERAEWEAAQLRKGM-DGLSDEKDRYKPPPIPKITPLPSLSECL---ERLRES 216 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhhc-cCCccchhccCCCCCcccCCCCchhHHH---HHHHHH
Confidence 33456677888888888877 22222 1111 2333334555555 445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+..|+.+...+. ..+..|+.|+..|......|+..|+
T Consensus 217 l~~le~~~~~~~-------~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 217 LSSLEDSKSQLQ-------QQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555544 4444555555555556666665554
No 134
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.31 E-value=1.7 Score=39.90 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
+.+-+..+.+|+++.++|++++..|..+ +.....+|+.||.+|+.-++-
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr~e~~~l~~~---~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLRQELLKKNQQ---LEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 3344445566779999999998888544 334455588888888775443
No 135
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.24 E-value=2.2 Score=46.60 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHhHHHHH
Q 026702 90 LNDRFMELASILDPGRPPKMDKT-VLLADAVQMVTQLRDEAQKLKVSN----------EKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 90 lNd~F~~Lr~lLpP~~~~K~dKa-sIL~dAI~yIk~Lr~~vq~Lk~~n----------~~L~~ei~~Lk~EknELr~E~~ 158 (235)
+++++.+||..+ |.-.....|. +=+.+.+..|..|..++.+++... ..+++.|.+|+.|.++++++..
T Consensus 804 ~ee~~~~lr~~~-~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 804 LEERVRKLRERI-PELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHHHHHHHHhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567777777777 4221111221 123445566666777776666542 2345557888888888875555
Q ss_pred HHHHHHHHHHHHHHHh
Q 026702 159 RLKNEKENLERQVKAL 174 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~~ 174 (235)
. |++++.|+.++..+
T Consensus 883 K-k~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 883 K-KARIKELQNKIDEI 897 (1293)
T ss_pred H-HHHHHHHHHHHHHh
Confidence 5 67777777766554
No 136
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=88.17 E-value=3.5 Score=39.35 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+|.-++.-+.+|+.+++.|..+|+.|+.+++.+..+..++-.+
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~ 173 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA 173 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677666666666666666655555555444444
No 137
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.15 E-value=2.9 Score=34.08 Aligned_cols=75 Identities=28% Similarity=0.363 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
..+..++..|..-|+ + .|++-.-. |.-=.+|+..++.|+.++..+...+.+|.+++++++.....-|..+..|
T Consensus 12 ~el~n~La~Le~slE-~--~K~S~~eL----~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 12 NELQNRLASLERSLE-D--EKTSQGEL----AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp --HHHHHHHHHHHHH-H--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-H--HHhhHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666662 1 24443322 3333457777777777777777777888888877766655444444444
Q ss_pred HH
Q 026702 168 ER 169 (235)
Q Consensus 168 e~ 169 (235)
+.
T Consensus 85 ~~ 86 (107)
T PF09304_consen 85 ES 86 (107)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 138
>COG5570 Uncharacterized small protein [Function unknown]
Probab=88.11 E-value=1.7 Score=31.56 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=17.6
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHH
Q 026702 149 EKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.+.+|...+.+||.|||+|..|.
T Consensus 34 ~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 34 AIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 34577788888888999887663
No 139
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.08 E-value=3.1 Score=35.53 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
++++.+|+++|+.|..+...|...||.|.+.|+.+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777777777777777777777776654
No 140
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.04 E-value=4.6 Score=33.75 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
|+.-+..|+.++..|+.++..+..+|..|......|..+..
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld 52 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELD 52 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444444444333333
No 141
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.00 E-value=7.1 Score=29.28 Aligned_cols=60 Identities=30% Similarity=0.391 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++..=..--..|..+..++...+.+|+..++++..++.+|......+..+++.|+..++.
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444556666666667777777777777777777777777777777777776653
No 142
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=87.98 E-value=4.5 Score=29.84 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.....+..+...++.+++.++.|.++|+.|...|.. .++++..-+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar 68 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 344455555555555555555555555555555443 455555444
No 143
>PF14282 FlxA: FlxA-like protein
Probab=87.96 E-value=3.4 Score=32.80 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGK----INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~e----i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-..|+.|+++++.|.+++..|... .+.-+.....|..+...|.+++-.|+.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888887762 2333444456777777777777777666554
No 144
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.95 E-value=4.2 Score=36.16 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++..|...=+-|.+++..|+.....|+++.+.|-++..++..|++.|-++++.|+.+-..
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555555566666666666666666666666666666666666666666666665443
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.67 E-value=2.1 Score=38.87 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+-+|+.+++.|+.++..|+..++++.-+++++.+.-..+..+++++-.+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666666666666666666666665443
No 146
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.65 E-value=2.6 Score=41.95 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
+-|+.|-.++++++.+..+|..+.+.|+.|.+.||.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555544
No 147
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=87.63 E-value=4.2 Score=34.31 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.+|+.++..|..+++.|+.|..+++.|...++...+.|..-.-
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4577777777777877777777777777777777777766543
No 148
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.63 E-value=8 Score=38.08 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026702 83 EKMRRDRLNDRFMELASI 100 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~l 100 (235)
||.||++|-..+..+..+
T Consensus 110 ~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 110 EREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 468888898888888774
No 149
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.52 E-value=3.3 Score=40.08 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhhc
Q 026702 89 RLNDRFMELASIL 101 (235)
Q Consensus 89 klNd~F~~Lr~lL 101 (235)
.|+..+..|...+
T Consensus 310 ~l~~~l~~l~~~i 322 (562)
T PHA02562 310 ELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 150
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.47 E-value=6.1 Score=42.90 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPG----RPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQR 159 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~----~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~ 159 (235)
|++.+.++..+..+..-+--. ...--+|..-|...|+ .|+.++.+|+.+...+.++++....|+..++.+...
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve---k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE---KLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556666777777776666110 0112344445554443 355567778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 026702 160 LKNEKENLERQVKAL 174 (235)
Q Consensus 160 Lk~e~e~Le~qlk~~ 174 (235)
|+..++....+|+.+
T Consensus 448 l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 448 LRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887777664
No 151
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=87.44 E-value=2.8 Score=35.59 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
..+||+| |++++++|+....+|++++.+|.....+++.+.+.+..+
T Consensus 92 ~~eAie~---l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 92 ADEAIEF---LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 678888999999999999999988888888887776443
No 152
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=87.42 E-value=6.9 Score=27.16 Aligned_cols=29 Identities=34% Similarity=0.420 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
.++.+|+.+++.|+.+|..|..++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666666655555544
No 153
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.27 E-value=4.5 Score=44.25 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
...++++++.+..|...+ .. -+..|. =|..++.-..+|+.++..|+.++..+..++++++.+...|..+...+..+
T Consensus 849 ~~e~e~~~~eI~~Lq~ki-~e--l~~~kl-kl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKT-NE--LKSEKL-QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH-HH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 556666777777776666 21 122333 33347777788888888888888888888888888888777777777777
Q ss_pred HHHHHHH
Q 026702 164 KENLERQ 170 (235)
Q Consensus 164 ~e~Le~q 170 (235)
++++.++
T Consensus 925 ~~~~~~~ 931 (1311)
T TIGR00606 925 KEELISS 931 (1311)
T ss_pred HHHHHHH
Confidence 7665554
No 154
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.24 E-value=3.7 Score=41.58 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=5.2
Q ss_pred CCcccCCC
Q 026702 32 PEVLWSSS 39 (235)
Q Consensus 32 ~~f~w~~~ 39 (235)
-+|.|...
T Consensus 54 ~Tf~Wa~~ 61 (546)
T PF07888_consen 54 YTFVWAPV 61 (546)
T ss_pred eeEEeecc
Confidence 35888753
No 155
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.24 E-value=6 Score=38.96 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q 026702 85 MRRDRLNDRFMELASIL 101 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lL 101 (235)
+|++.+..-+.++..-|
T Consensus 38 ~~l~q~q~ei~~~~~~i 54 (420)
T COG4942 38 KQLKQIQKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 156
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.09 E-value=5.8 Score=33.44 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 82 REKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 82 ~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
....+-..+.+.+.++...+ . +..+=+.+-.+....+++..+..++....+.+.++.+..+..+++++...++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~-~------~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 157 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERI-Q------ELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSR 157 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554 1 1222222222333333344445555666666667777777777774444455
Q ss_pred HHHHHHHHHHHH
Q 026702 162 NEKENLERQVKA 173 (235)
Q Consensus 162 ~e~e~Le~qlk~ 173 (235)
.+.+.+..+++.
T Consensus 158 ~~~~~~~~~~~~ 169 (191)
T PF04156_consen 158 EEVQELRSQLER 169 (191)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 157
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=86.96 E-value=2.9 Score=34.05 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
+|+.+++.|-+.+..+|.|.-.||.||+.|-+=||.|
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3444444444444445555555667777766555544
No 158
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.93 E-value=5.1 Score=35.13 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 157 KQRLKNEKENLERQV 171 (235)
Q Consensus 157 ~~~Lk~e~e~Le~ql 171 (235)
..+|+.+.+.|++++
T Consensus 161 i~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 161 ISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334434433344433
No 159
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=3.3 Score=43.91 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.|++|..+++.|++.+..|+-+.++|..+..+...+.++|+.+.+-|+.||+-.
T Consensus 664 ~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 664 GLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344444444555555555555555555555555555667778888888888743
No 160
>PRK14127 cell division protein GpsB; Provisional
Probab=86.79 E-value=4.5 Score=32.85 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=15.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.|..|+.+|++++..|+.+++.++.++..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444445555555555555555555554
No 161
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.55 E-value=1.9 Score=41.44 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+-.-.+.|..+..+|+.++..|+.++++++.+.+.++.|...++.|+++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 13 TTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344566667777777788888888888888888888888889999888865
No 162
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.52 E-value=10 Score=35.03 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 026702 78 SKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK-------INELKCEK 150 (235)
Q Consensus 78 ~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e-------i~~Lk~Ek 150 (235)
.|...|=-|.+-=|....+--.-| .+.+.-||=-.-+.+--+-+.+++++...|.++++.|+.+ ++.|+.|+
T Consensus 101 EhiD~elvrkEl~nAlvRAGLktL-~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 101 EHIDVELVRKELKNALVRAGLKTL-QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544444444333333 2222233433333333333444445544555555554444 44455555
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..|.+....|-.+..+|+..+..
T Consensus 180 s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 180 SRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHhchhHHHHHHHHHHH
Confidence 54444444444555555554443
No 163
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=86.46 E-value=3.7 Score=39.21 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
.-+..|..+.++|+.+..++..+++++-.+|+++..+
T Consensus 144 ~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~ 180 (342)
T PF06632_consen 144 AENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED 180 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677788888888888888888888888777776
No 164
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.41 E-value=4 Score=38.35 Aligned_cols=12 Identities=33% Similarity=0.216 Sum_probs=5.7
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
|+.....|..++
T Consensus 163 L~~~~~~l~~~~ 174 (312)
T smart00787 163 LMKELELLNSIK 174 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 165
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.30 E-value=2.9 Score=33.31 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
...++.++.+++++..+|+.+|..|+.|+++|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555566666666666666666666666655
No 166
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.14 E-value=3.7 Score=42.05 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++.|+.++..+++.+..|..+.+.|+.|+......+..|+.+|..
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555554444
No 167
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.05 E-value=7.9 Score=33.34 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|++|..++......++.|+.|+-.|..+.+.+.+....|+.|...|=+
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666666666666665543
No 168
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=86.04 E-value=0.96 Score=45.85 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|+..+++|.+|.+.||.||..||.+++-|..
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3344444444444444444444444444433
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.87 E-value=3.8 Score=37.22 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 132 LKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|...++.|+.||.+|+-+++++.-+...++.+-..+.++|..
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444
No 170
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=85.73 E-value=9.4 Score=31.77 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.+...-...+++....|+.++......++.|+++++........-.+....|+..+..++.+++..
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888877778888888777666665555555666666666666666653
No 171
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=85.72 E-value=5.7 Score=30.58 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|-++...|+..+...++||..|+.-...||.+...+-.-..+|+.++..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555556666666666666655555555555554443
No 172
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.68 E-value=6.1 Score=32.19 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
..+..|+++...+..-+++|+.+...+..
T Consensus 44 ~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 44 NALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333343333333333
No 173
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.62 E-value=17 Score=31.63 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=47.8
Q ss_pred CCCchhHHHH-----HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREK-----MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQM---VTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 75 ~~~~h~~~ER-----rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~y---Ik~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
+-.+=.|.|| +=|+.+...|.+...+.. .+.+-.+.+++.. ..+|+.++..|+.++..|..++.+|
T Consensus 73 RQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~------s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 73 RQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYE------SSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557777 346777777777776662 2333333344333 3345555555555555555544444
Q ss_pred HHHHhH---------------hHHHHHHHHHHHHHHHHHHHH
Q 026702 147 KCEKNE---------------LRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 147 k~EknE---------------Lr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..... ..+|...||.+...|.++|+.
T Consensus 147 ~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 147 KNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333332 333444555555555555543
No 174
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=85.59 E-value=4.8 Score=35.66 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEK--NELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek--nELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|..|+++++.|+++......||++|.... .|++++.+.|+.+....+..|+.+
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666554 467777777777777766666654
No 175
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.58 E-value=4.3 Score=37.62 Aligned_cols=93 Identities=30% Similarity=0.359 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCC-------CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 026702 63 GSRKRVRSGSCS-------ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVS 135 (235)
Q Consensus 63 ~~~KR~r~es~~-------~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~ 135 (235)
..+||.|....+ ++.++..+-.--|||=+.+..++-..| + |-.+--..|+.+.+.|+..
T Consensus 54 ~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i---~-----------dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 54 PKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEI---K-----------DLTEENEILQNENDSLRAI 119 (292)
T ss_pred hHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHHHH
Confidence 345666655442 233334455556777778888777666 1 3345556799999999999
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|+.|..+.++|..+..+|++|...|+.+.---..
T Consensus 120 n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~ 153 (292)
T KOG4005|consen 120 NESLLAKNHELDSELELLRQELAELKQQQQHNTR 153 (292)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhH
Confidence 9999999999999999999999988877654333
No 176
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=85.48 E-value=3.8 Score=41.33 Aligned_cols=79 Identities=25% Similarity=0.284 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
.++.+++++.+..|+...+. . +..+.. ...+++. .+.+-.+..+...+++.+++.+|..++++|++|...|+++
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~-~--~~~~~~--~~~~~~~-~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPK-L--NPLREE--KKKVSVK-SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHhccc-c--ccchhh--hcccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888732 1 111000 0011111 1111122334445555556666666666666666666666
Q ss_pred HHHHH
Q 026702 164 KENLE 168 (235)
Q Consensus 164 ~e~Le 168 (235)
++.|+
T Consensus 123 ~~~l~ 127 (646)
T PRK05771 123 IERLE 127 (646)
T ss_pred HHHhh
Confidence 66555
No 177
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.43 E-value=4.1 Score=33.04 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
+.+|+.+ |..+++.|+...+.|..++..++.+.+++++....|..+
T Consensus 92 ~~eA~~~---l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 92 LDEAIEI---LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788877 556667777777777777777777777766666655544
No 178
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.37 E-value=3.4 Score=29.95 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..|+.++..+....+-++.|++.++.+++++++-++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665544
No 179
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.36 E-value=5.3 Score=33.17 Aligned_cols=50 Identities=12% Similarity=0.281 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+|.++++.|....+...+-++..+.+..+++++...++.+++.+++-+..
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35566666666666655556666677777777777777776666665444
No 180
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=85.26 E-value=6.2 Score=30.43 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 128 EAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+-++|.++...||..+..|-..+.+.++|+..|+.|.+-|++=+..+-.
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557778888899999999999999999999999999999998888533
No 181
>PRK02224 chromosome segregation protein; Provisional
Probab=85.23 E-value=9.1 Score=39.49 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=8.9
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHH
Q 026702 148 CEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~Le~q 170 (235)
..++.++.+...|+.+++.++.+
T Consensus 377 ~~l~~~~~~l~~l~~el~el~~~ 399 (880)
T PRK02224 377 EAVEDRREEIEELEEEIEELRER 399 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333
No 182
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.00 E-value=4.4 Score=37.46 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQ-LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~-Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
+.+|+.+...+.-+ - +.....|-.||+.++.-+.. .+..+-..-.+|..++.++..-+.++++|.++...|++|++.
T Consensus 141 del~e~~~~el~~l-~-~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASL-S-RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544 2 11244667788876655444 555555555678888888888888888888888888888888
Q ss_pred HHHHHH
Q 026702 167 LERQVK 172 (235)
Q Consensus 167 Le~qlk 172 (235)
|..+..
T Consensus 219 L~~~~~ 224 (258)
T PF15397_consen 219 LQAQAQ 224 (258)
T ss_pred HHHhhc
Confidence 888776
No 183
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.96 E-value=7.1 Score=42.77 Aligned_cols=85 Identities=9% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHH------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHh
Q 026702 85 MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMV------TQLRDEAQKLKVSNE-----KLLGKINELKCEKNEL 153 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yI------k~Lr~~vq~Lk~~n~-----~L~~ei~~Lk~EknEL 153 (235)
...+.++..+..|+.-|. .....---|.+-+.|+ .+++.++..|..++. .++.+..+|..+.+.|
T Consensus 991 ~e~~~l~~~i~~l~kel~----~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l 1066 (1311)
T TIGR00606 991 KHQEKINEDMRLMRQDID----TQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLI 1066 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 346677888888888882 2334445567888888 555555555555443 3444555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 154 RDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le~qlk~ 173 (235)
..++..+..++.+|+.|+..
T Consensus 1067 ~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606 1067 KRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65555555666666665554
No 184
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=84.92 E-value=3.7 Score=38.46 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
|+++|+.=.+.++++. .+..+..=+.+.-.-+++|+..+++++.+.+.+..+++++..
T Consensus 5 ~~~~~~~~~~~r~l~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 5 KEQREEIVAEIRSLLD----KAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777773 111111112222223345555555555555555444444433
No 185
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=84.89 E-value=0.74 Score=36.39 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
+.=+||..|..++..|..++..|..++++|..+..+++.....|+..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 34577777777777777777777666666655555555544444443
No 186
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.85 E-value=7.1 Score=34.23 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=11.0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 149 EKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|+..|..+...++.+++..+.+++.
T Consensus 160 ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 187
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=84.79 E-value=5 Score=34.01 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLG---KINELKCEKNELRDEKQ 158 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~---ei~~Lk~EknELr~E~~ 158 (235)
+..|+.++.....++..|.. .+++|+.++.+|+.++.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444444444444444443 34444444444444443
No 188
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.70 E-value=10 Score=31.99 Aligned_cols=78 Identities=26% Similarity=0.378 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQ---MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~---yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
.+.|-+++..|-+=|.- ...++..+.-+|=. .|..|+.++..+-.+...|..+...|+.|+..|..+.+..+..
T Consensus 19 ~dsle~~v~~LEreLe~---~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 19 KDSLEDHVESLERELEM---SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HhhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777666622 34455555544422 2333444444444444444444444444444444443333333
Q ss_pred HHHH
Q 026702 164 KENL 167 (235)
Q Consensus 164 ~e~L 167 (235)
++.|
T Consensus 96 v~eL 99 (140)
T PF10473_consen 96 VSEL 99 (140)
T ss_pred HHHH
Confidence 3333
No 189
>PRK04406 hypothetical protein; Provisional
Probab=84.68 E-value=6.3 Score=29.80 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
..|.+|+.++.-++..++.|...+-...+++..|+.+...|...+..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788888888888888888888887778888888887777765554443
No 190
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=84.68 E-value=0.43 Score=49.54 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=62.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCC----CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 74 SASGSKACREKMRRDRLNDRFMELASILDPGR----PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 74 ~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~----~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
.+..+|.-+|.+||..+.-+|..|-++. .+. .-|+.+..-+...++||.-++.+...+.++-..|+.++.+|++-
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~-Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~ 728 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLS-SNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAV 728 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhc-cCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHH
Confidence 4688999999999999999999999888 432 24888888899999999988877777766666676666666666
Q ss_pred HhHhH
Q 026702 150 KNELR 154 (235)
Q Consensus 150 knELr 154 (235)
++-++
T Consensus 729 ~~~~~ 733 (856)
T KOG3582|consen 729 ISACQ 733 (856)
T ss_pred HHHhh
Confidence 65443
No 191
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.60 E-value=5.5 Score=41.95 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
.-.+..+.|.++...+|+...+++-++.+|..++|+|.++++.+-
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333455667788888888888888888888888888888877754
No 192
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=84.52 E-value=6.3 Score=31.75 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 80 ACREKMRRDRLNDRFMELASILDPGRPPKMDKTVL-LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasI-L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
.+..++||..|.-....+-..+ - ..++ +..-+.-+..|..+++.+++++++|..+...|++|++.|+++
T Consensus 17 ~~~~~~~~~~l~~~l~~~l~~f-~-------~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 17 GERRVRRRRILTLVLLALLALF-Q-------YLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH-H-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455555655555555554444 1 1111 111222233345555555666666665555555555555555
No 193
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=84.40 E-value=14 Score=27.74 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
++.|++.++++.+..+.+++++..+..|.+++-.+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~ 55 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHN 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 194
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.37 E-value=6.2 Score=29.02 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.|.+|+.++.-++..++.|...+-....++..|+.+...|...+..++..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456677777777777777777777777777777777777777777766643
No 195
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.29 E-value=7.9 Score=29.94 Aligned_cols=55 Identities=31% Similarity=0.425 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLG---KINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~---ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.-+.+|+.+-..+..+...+.. +..+|+.+..++.++...|..+...++.++..
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665555443 46667777777777777777777777777766
No 196
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=83.96 E-value=5 Score=33.09 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 132 LKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
.+++.+.|+++|++|....+.|+.||..||.-
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666677777777777788888777654
No 197
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.90 E-value=12 Score=32.92 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=32.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
.||. .|..+=.-++.++.++..|+.+++.|......|..|+++|.+.
T Consensus 83 kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 83 KDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 4555666667777777777777777777777777777777654
No 198
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.78 E-value=3.5 Score=30.43 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
.++..+++.++.+.+.++.+..+|+.|.+.|.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455555555555555555555555555444
No 199
>PRK02119 hypothetical protein; Provisional
Probab=83.71 E-value=9.3 Score=28.65 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
...-+.|.+|+.++.-++..++.|...+-...+++..|+.+...|..++..++
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34446788888888888888888888888888888888888888876666554
No 200
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.63 E-value=25 Score=31.69 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKL 139 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L 139 (235)
|.+|+..+..+..++..|
T Consensus 56 l~~lr~~id~~~~eka~l 73 (312)
T PF00038_consen 56 LRELRRQIDDLSKEKARL 73 (312)
T ss_dssp HHCHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhHH
Confidence 344444444444333333
No 201
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.59 E-value=11 Score=32.28 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.-.++|+.+++.|+.+|..|+...+.+......|.+....|+.+...+..
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Confidence 34456777777777777776655555555555555555555555444443
No 202
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=83.55 E-value=1.3 Score=32.56 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+|++.||..+.+|.+.+..|+.|...|++
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555544
No 203
>PRK14011 prefoldin subunit alpha; Provisional
Probab=83.51 E-value=7.9 Score=32.66 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+.+|++| ++.+++.|+...++|.+.+.++..+.++++.+.+ .....++++.+
T Consensus 86 ~~eA~~~---~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~---~k~~~~~~~~~ 137 (144)
T PRK14011 86 VSEVIED---FKKSVEELDKTKKEGNKKIEELNKEITKLRKELE---KRAQAIEQRQA 137 (144)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 5778887 6678888888888888888888888888887643 33444544443
No 204
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.48 E-value=12 Score=31.84 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
+...|.+|+.=+
T Consensus 56 ~~a~~~eLr~el 67 (177)
T PF07798_consen 56 FKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHH
Confidence 344555555544
No 205
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.36 E-value=4.8 Score=35.04 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVK 172 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk 172 (235)
.|+.+++.|+.+|.
T Consensus 114 ~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 114 ELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 206
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=83.33 E-value=0.82 Score=41.63 Aligned_cols=52 Identities=29% Similarity=0.416 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVTQLR 126 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk~Lr 126 (235)
++.+=+.+||.|=-.||+-|..||.+||.. ..+|+.|...|.-|-.||-.|.
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als 124 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALS 124 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhc
Confidence 566668899999999999999999999533 2479999999988888887654
No 207
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=83.24 E-value=27 Score=29.52 Aligned_cols=81 Identities=21% Similarity=0.426 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMV-TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yI-k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
.|++.|..|-.+++-+ . .....+.|+++-| .++...+...-.-...++.+++.++.|...|++.+.+++..+++|
T Consensus 5 el~~~~~~l~~~~e~~---~-~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 5 ELTDEYLELLELLEEG---D-LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999998532 2 4445667777663 345566666667777888889999999999999999999999998
Q ss_pred HHHHHH
Q 026702 168 ERQVKA 173 (235)
Q Consensus 168 e~qlk~ 173 (235)
++-|..
T Consensus 81 k~yL~~ 86 (162)
T PF05565_consen 81 KEYLLD 86 (162)
T ss_pred HHHHHH
Confidence 886554
No 208
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=83.08 E-value=5.8 Score=37.73 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSN-EK----LLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n-~~----L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.|.++.|+-.-+|+.+.+++-+.. .. .+.|+.++-+.+.|||.|..+|+.+++.|+.+
T Consensus 255 ak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 255 AKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566677777777777766655433 22 45677777777777777777777777766643
No 209
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.02 E-value=4.5 Score=38.37 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
..|++.+.+++..++.|+... .+|..+...++.++++++.+++.+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKL-------RDLEAENEKLERELERLKSELEKLKSPP 52 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344455555555555544444 4444444455556666666777666655
No 210
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.96 E-value=8.6 Score=34.34 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=27.4
Q ss_pred HHHhhcCCCCCCCCchhhhH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 96 ELASILDPGRPPKMDKTVLL-------ADAV----QMVTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 96 ~Lr~lLpP~~~~K~dKasIL-------~dAI----~yIk~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
.|.++|+-|- ...+|.++- ++|| .|.+.|.++++...+....|.+.+...
T Consensus 47 vLQsLvDD~l-V~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~ 107 (203)
T KOG3433|consen 47 VLQSLVDDGL-VIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENR 107 (203)
T ss_pred HHHHHhccch-HHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 4666664432 344454444 3443 466677777777666666666554333
No 211
>PRK04325 hypothetical protein; Provisional
Probab=82.89 E-value=6.8 Score=29.42 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
+.|.+|+.++.-++..++.|...+-.-.+++..|+.....|...+..++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588888888888888888888887788888888888777766655554
No 212
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=82.89 E-value=7.3 Score=31.82 Aligned_cols=51 Identities=33% Similarity=0.406 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
++.++..++.+..+|..|-+..-.+..+..++|++...+..+...|+.++.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444555555555555555555555555443
No 213
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.81 E-value=27 Score=30.21 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 111 KTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 111 KasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.-.+-..|+.-+.+++.++..|+.....+...+..|+..+.+|+.....++.+++-|..
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665555555444444444444444444444444433
No 214
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=82.73 E-value=15 Score=27.61 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.+.-+-++++++.++.++++.+.+..|+..+-.+.|++-++...-....+.+-+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334455666666666666666666666666666666666654444444443333
No 215
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=82.69 E-value=6.9 Score=33.05 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=17.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++|..++.+|+.|...|+.|.+++..++.+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665555554
No 216
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.60 E-value=8.9 Score=38.95 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=12.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..|+.|++.|..++..++..+..|+..++.
T Consensus 202 e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 202 EELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 217
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.60 E-value=4.7 Score=38.27 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
..++++|+.++++|+..+..|..+.+.++.+..++++++..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45667788899999999999988888888777777776655543
No 218
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.52 E-value=7.2 Score=37.77 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
++.++=..+..|++-+..++++|..|+....++.+|..|..+|.+.|-.|...
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 45555566677788888888888888888888888888888887777555544
No 219
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=82.48 E-value=10 Score=33.58 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
.|-.....+..+|..|+.++..|-.+...|+..+..|..++..|.++
T Consensus 153 ~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 153 SLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555544
No 220
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=82.45 E-value=12 Score=37.98 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+.++++++.+|..++..++.+++++..|++||..=.
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666777777777777654433
No 221
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=82.38 E-value=29 Score=29.91 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
-+.+++.+++.|+.+...|.+.|+.+-.++.+.+.+...+
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777777777777777777777777777766544
No 222
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=82.36 E-value=9.3 Score=31.21 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------hHhHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNE-KLLGKINELKCEK--------NELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~-~L~~ei~~Lk~Ek--------nELr~E~~~Lk~e~e~Le~qlk 172 (235)
..+|-+|+.+|-++++.-..+.+ ++...|+++.... .+|+.+...|+.++-.||.+++
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888775444332 2333344333332 4666666677777777766654
No 223
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=82.31 E-value=11 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026702 154 RDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le~qlk~~ 174 (235)
++....+..++++|+..|..+
T Consensus 45 r~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 45 REKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334556777777777777654
No 224
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=82.27 E-value=17 Score=35.25 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGR--PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCE-----KNELRDEKQRL 160 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~--~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E-----knELr~E~~~L 160 (235)
+.|-++|.+|..+| -+. .+..++..-|+.-..+|..+-....++++..+.|..--.-|..+ +...++|...|
T Consensus 10 ~~~~~r~~el~~~L-~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~ 88 (363)
T COG0216 10 ESLLERYEELEALL-SDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88 (363)
T ss_pred HHHHHHHHHHHHHh-cCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 45677999999888 321 13445666666666666655555555555444443322222211 13467788899
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 026702 161 KNEKENLERQVKALSSQP 178 (235)
Q Consensus 161 k~e~e~Le~qlk~~~~~p 178 (235)
+.+++.|+.+|+.+=.|+
T Consensus 89 ~~~~~~le~~L~~lLlPk 106 (363)
T COG0216 89 EAKIEELEEELKILLLPK 106 (363)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999976655
No 225
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.14 E-value=9.2 Score=41.44 Aligned_cols=83 Identities=23% Similarity=0.260 Sum_probs=57.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 77 GSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 77 ~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
.+-...+..++.++=+.+..|++.+.- +. .-++.|++++++...+++.++.++..++++..++..+
T Consensus 621 ~~~~~~l~~~~~~~ee~~~~~~~~~~~-~~-------------~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~ 686 (1072)
T KOG0979|consen 621 FSVSPVLEELDNRIEEEIQKLKAEIDI-RS-------------STLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSE 686 (1072)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhh-hh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334556777777888888888888832 11 3456677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026702 157 KQRLKNEKENLERQVKA 173 (235)
Q Consensus 157 ~~~Lk~e~e~Le~qlk~ 173 (235)
...++..++++|.++..
T Consensus 687 ~~~~~~r~~~ie~~~~~ 703 (1072)
T KOG0979|consen 687 LKSYQQRKERIENLVVD 703 (1072)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665443
No 226
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.10 E-value=12 Score=34.70 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH-------HHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK-------NEKENLERQVKA 173 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk-------~e~e~Le~qlk~ 173 (235)
+-.-|.+++..+..+..+...|..+|+.-+.|.+-.+.....|+ .|-|+||.+|+.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 33444455555555555666677777777777666666655444 477777777765
No 227
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=81.91 E-value=6 Score=31.12 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=7.8
Q ss_pred HHHHHHHHhHhHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~ 162 (235)
+++|..+++.|.+|+..|+.
T Consensus 51 v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKK 70 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333
No 228
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=81.86 E-value=1.8 Score=37.45 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
-|..||+.---|+.++ +|.+.|+.++..||.|..+|+.|.
T Consensus 8 klN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 8 KLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888777 334455555555555555444444
No 229
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.84 E-value=40 Score=37.54 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=4.5
Q ss_pred CCCCCcccC
Q 026702 29 LDPPEVLWS 37 (235)
Q Consensus 29 ~~~~~f~w~ 37 (235)
.|+=||.+.
T Consensus 395 LPFIGfTy~ 403 (1317)
T KOG0612|consen 395 LPFIGFTYT 403 (1317)
T ss_pred CCeeeeeec
Confidence 344455554
No 230
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.84 E-value=7.2 Score=39.97 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
.|...|+++...+++.+..|.+++..|+.|+.........|...+.+|+.|+....
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 59999999999999999999999999999999999999999999999999887743
No 231
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.84 E-value=8.6 Score=40.22 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQL 125 (235)
Q Consensus 114 IL~dAI~yIk~L 125 (235)
||.+|-+++.+.
T Consensus 498 ii~~A~~~~~~~ 509 (771)
T TIGR01069 498 IIEQAKTFYGEF 509 (771)
T ss_pred HHHHHHHHHHhh
Confidence 445554444433
No 232
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=81.77 E-value=13 Score=37.58 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 84 KMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
--=+..||+.|..|..+. -.-....-|.+||+.|=....++...-..|+........+|...-.++|.|-+
T Consensus 107 ~sl~~~L~~ff~s~q~la-~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~ 177 (552)
T COG1256 107 SSLSTLLNDFFNSLQELA-SNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLK 177 (552)
T ss_pred ccHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444677888888888887 32223567778888887776666655555555444444444433344444333
No 233
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.76 E-value=9.8 Score=34.78 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
..+++.++.+...+......++.+.++|+.++..+..+.+.+...+++++.++
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666666666666666666666655555
No 234
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=81.74 E-value=7 Score=26.81 Aligned_cols=19 Identities=47% Similarity=0.576 Sum_probs=9.0
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLER 169 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~ 169 (235)
..|+.++..||-++.++.+
T Consensus 30 ~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 30 ERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555443
No 235
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.71 E-value=6 Score=40.32 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=17.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
++.+..|+++|..+...+..++++|.+.
T Consensus 334 ve~mn~Er~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 334 VERMNLERNKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666653
No 236
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.57 E-value=9.8 Score=38.66 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
+.+-+.+|+..+
T Consensus 118 l~~e~~elr~~~ 129 (546)
T KOG0977|consen 118 LREELKELRKKL 129 (546)
T ss_pred hHHHHHHHHHHH
Confidence 334444444443
No 237
>PRK10869 recombination and repair protein; Provisional
Probab=81.51 E-value=15 Score=36.81 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 85 MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKV---SNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~---~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.|=+.|++|+..|..+- + |-. .-+.+.+.|..+++.+++.|+. ..+.|+.+++.++.+..++..+.+..+
T Consensus 296 ~~l~~ie~Rl~~l~~L~---r--Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R 368 (553)
T PRK10869 296 NRLAELEQRLSKQISLA---R--KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSR 368 (553)
T ss_pred HHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888887 3 322 2588999999999999888775 567788888888888888777776555
Q ss_pred HH-HH----HHHHHHHHhcCCC
Q 026702 162 NE-KE----NLERQVKALSSQP 178 (235)
Q Consensus 162 ~e-~e----~Le~qlk~~~~~p 178 (235)
.+ -+ .+..+|+.++.+-
T Consensus 369 ~~aA~~l~~~v~~~L~~L~m~~ 390 (553)
T PRK10869 369 QRYAKELAQLITESMHELSMPH 390 (553)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 54 23 3455666666544
No 238
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.44 E-value=9.1 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLG 141 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ 141 (235)
..++.|+.+++++++
T Consensus 42 ~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 42 KKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 239
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=81.44 E-value=2 Score=32.95 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=15.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 151 NELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
++|++|+.+||.++.+|+.+|+.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665543
No 240
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=81.37 E-value=1.7 Score=43.06 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--CCCCchhhhHHHHHHHHHH
Q 026702 82 REKMRRDRLNDRFMELASILDPGR--PPKMDKTVLLADAVQMVTQ 124 (235)
Q Consensus 82 ~ERrRRdklNd~F~~Lr~lLpP~~--~~K~dKasIL~dAI~yIk~ 124 (235)
.-|.||++=|--|.+|..+||--+ ....||++|+.=|..|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 668999999999999999994321 2469999999999999983
No 241
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=81.32 E-value=2.5 Score=39.33 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=41.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVTQLR 126 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk~Lr 126 (235)
++..-+.+||+|=..||..|..|+.++|-+ ...|.+|-..|.-|-.||.-|-
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~ 226 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALG 226 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhH
Confidence 455567899999999999999999999432 2358889888888888877553
No 242
>PF14282 FlxA: FlxA-like protein
Probab=81.27 E-value=7.2 Score=30.94 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKV----SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~----~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.+.+..--+-|+.|+.+++.|.. ..+.-+..++.|..++..|+.....|..++..-..+-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555667777777777776 2244556667777777777777777766665554443
No 243
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=81.26 E-value=11 Score=28.29 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 123 TQLRDEAQKLKVSNE----KLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~----~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
++|....+.|++... ..+.....|.......+.++..|..++..|.+|+..++..+
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555443 34445666777777777778888888888888888876543
No 244
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.25 E-value=12 Score=27.16 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.++.+|..+...|..++..|..+.+-||.+.+..+.|-.|-.+.|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888888888888888888888888777777766655543
No 245
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.23 E-value=9.3 Score=35.90 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINE----LKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~----Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|.++-...++|+..+++|..+.+.+.++.+. --++...|+++++.+++.+|.|+.
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444433211 123345677777777777776554
No 246
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.16 E-value=7.7 Score=38.60 Aligned_cols=45 Identities=31% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.++|.|+.+|..|+..+..|+...++|-.|++++-.++|-|..|+
T Consensus 304 mr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql 348 (502)
T KOG0982|consen 304 MRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQL 348 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555444443
No 247
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=81.11 E-value=17 Score=37.72 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
..+.+++.+++.++..+..++.++..|+.+.+.++.+...++.+++.|
T Consensus 440 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 487 (1179)
T TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 248
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.07 E-value=9.6 Score=29.58 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSN 136 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n 136 (235)
+++.|...+..|+...
T Consensus 9 al~rL~~aid~LE~~v 24 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAV 24 (89)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555433
No 249
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=81.02 E-value=6.9 Score=30.41 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQR 159 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~ 159 (235)
+.+|++| |..++..|+...+.|..+++.++.+.+.+++..++
T Consensus 75 ~~eA~~~---l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 75 LEEAIEF---LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788887 44566666666666666666555555555544433
No 250
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.92 E-value=8.8 Score=37.22 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKIN----------ELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~----------~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++|+.+++.|+.+...+..+|+ +|+.+..+|+++...|+.+...++.++..
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444443 34444444555555555555555555554
No 251
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.89 E-value=15 Score=33.26 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDE----AQKL---KVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~----vq~L---k~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-.|.+-..-+..|..+ +++| .+....|...|+.++.|++..++...++..|..+|..++..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544 2233 22334455556666666665555555555555555555444
No 252
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=80.80 E-value=9.2 Score=30.79 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
|.-..-|+..+---....-..+..++.++..+++|...|..++..|++|+++|+..
T Consensus 31 l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 31 LLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344455444444455555666666666677777777777777777777777776
No 253
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.79 E-value=9.3 Score=36.06 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhc
Q 026702 163 EKENLERQVKALS 175 (235)
Q Consensus 163 e~e~Le~qlk~~~ 175 (235)
|..|||..|+.|.
T Consensus 157 QN~KLEsLLqsME 169 (305)
T PF15290_consen 157 QNKKLESLLQSME 169 (305)
T ss_pred hHhHHHHHHHHHH
Confidence 4455777777764
No 254
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=80.72 E-value=15 Score=29.16 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+-|.+++.+.-.++..|..|-.++.+|+.+...-+. ...+..++++++..++.
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 444444555555555666666666666665544333 44566677777776665
No 255
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.66 E-value=23 Score=35.81 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
..++-+.+.+|..-| - ..+.-.-+..-.+.+++++.++.+++.+...++.+++.++.++.+++.+
T Consensus 400 ~~~~e~el~~l~~~l-~----~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 400 LRELEEELAEVDKKI-S----TIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHH-h----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555 1 1111123444445555555555555555555555555555554444443
No 256
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=80.61 E-value=25 Score=28.47 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.+.+.-|+...+.|...++.|..+..+++++...+...+.++.+
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 257
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.53 E-value=7.6 Score=39.44 Aligned_cols=36 Identities=36% Similarity=0.458 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|+.++..+++.+.-|.+|+..|+.|+.+|..+|+.+
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344556666667777777778888888877777653
No 258
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.52 E-value=9.2 Score=28.07 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+..++.+.+.....+.....+-...+..|..++++|+.+++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666666777777777666654
No 259
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=80.28 E-value=8.7 Score=34.85 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINE-LKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~-Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+++....+++.++.. .+.|-..||.|+.+|+.|+|+++++|..
T Consensus 98 QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 98 QQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556555433 3455567999999999999999998875
No 260
>PRK02224 chromosome segregation protein; Provisional
Probab=80.26 E-value=19 Score=37.19 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSN 136 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n 136 (235)
|.++.+-+..|++++..|+...
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 261
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.07 E-value=6.5 Score=35.51 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
.+.++..+..|+.+++++..|.+.|-+|.+.|+.+++
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3334445566666677777777777777777766665
No 262
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.98 E-value=13 Score=31.30 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 91 NDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 91 Nd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
|.-+..|+... ....-+|+..=+=+..+..+...++.++....+.+..++.+...+..+...++.++.+|..+
T Consensus 62 n~eL~~Lk~~~-------~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 62 NKELLKLKKKI-------GKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555544 14455666666666666677777777777777777777777777777777777777777666
Q ss_pred HHHhcCC
Q 026702 171 VKALSSQ 177 (235)
Q Consensus 171 lk~~~~~ 177 (235)
...+..|
T Consensus 135 ~~~~~~P 141 (177)
T PF13870_consen 135 GGLLGVP 141 (177)
T ss_pred cCCCCCc
Confidence 6555444
No 263
>PF15294 Leu_zip: Leucine zipper
Probab=79.92 E-value=6.2 Score=36.88 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 111 KTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 111 KasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|-.-|.+. .-+.-|..++.+|+.+|++|++.++.+..+....-+|+..|+.++..|+.
T Consensus 117 KL~pl~e~-g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 117 KLEPLNES-GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred cccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333 22233556666677777776666666666666666666666666665555
No 264
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=79.91 E-value=11 Score=36.03 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 92 DRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKIN---ELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 92 d~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~---~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
+-|..|-..+ ++. .+.==|.| +--+|++.|++++++|+.+.++|.+++. ..+..+.++.++...+..+++.++
T Consensus 218 ~Yf~~l~~~f-~d~-a~~~~A~l--~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 218 EYFENLYDAF-GDK-AKFFLAEL--NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHC-CCC-EEEEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCC-eEEEEEEE--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888 432 10000000 1126777778887777777777766532 344556677777778888888877
Q ss_pred HHHHH
Q 026702 169 RQVKA 173 (235)
Q Consensus 169 ~qlk~ 173 (235)
+.++.
T Consensus 294 ~~~~~ 298 (406)
T PF02388_consen 294 ELIAE 298 (406)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76665
No 265
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=79.79 E-value=19 Score=28.82 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 80 ACREKMRRDRLNDRFMELASILDP---GRPPKMDKTVLLAD-AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP---~~~~K~dKasIL~d-AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
...+|..|+ -=|..|...|+. +.....+..-+... .+.+++=+|=.++=|-...+.|...+..|+.+...+..
T Consensus 18 iDvd~i~~~---~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~ 94 (118)
T PF13815_consen 18 IDVDRIVRE---LDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQ 94 (118)
T ss_pred cCHHHHHhc---cCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666663 345555555522 11122222222222 24677777777888888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026702 156 EKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 156 E~~~Lk~e~e~Le~qlk~~ 174 (235)
+...|+....+++.+++.+
T Consensus 95 ~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 95 EIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888765
No 266
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.74 E-value=11 Score=35.63 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKV-SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~-~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+||+|=..|-+-.++|+. +...|...+..++..+.+..+....|+.+++.|+.++
T Consensus 49 ~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 49 EAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 2233333344444444444444444444444444444
No 267
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=79.70 E-value=14 Score=32.96 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKL--LGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L--~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-.|...=..|.-..|+.|+.+.++|.+-.++- -+++-++..++++.|.|...++.++..|+.++..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 33444444444444444444444444433211 1234445555555555555555555555555544
No 268
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.67 E-value=12 Score=27.96 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
-..|.+|+.++.-++..++.|.+.+-...+++..|+.+...|..++..++.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357888888888888888888888888888888888888888776666543
No 269
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.49 E-value=13 Score=39.66 Aligned_cols=72 Identities=29% Similarity=0.266 Sum_probs=48.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSN-------EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPA 179 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n-------~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~ 179 (235)
+.+--.+=.-|-.|+.+|...+++++... +.|++..++|+.|..+|.++.+....++..|+.|+.-+..+=+
T Consensus 638 ~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 638 KTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444445556788888887777777654 4455556667777777777777777777778888776655444
No 270
>PRK04654 sec-independent translocase; Provisional
Probab=79.01 E-value=17 Score=32.82 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSN 136 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n 136 (235)
-++|+++|......+++.
T Consensus 33 Gk~irk~R~~~~~vk~El 50 (214)
T PRK04654 33 GLWVRRARMQWDSVKQEL 50 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666665555543
No 271
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.85 E-value=3.4 Score=30.38 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
.+.|++.|.+|....++|+.||..||.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555566665554
No 272
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=78.83 E-value=8.1 Score=37.39 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCE----KNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~E----knELr~E~~~Lk~e~e~Le~qlk 172 (235)
++|+.+++.|+.+...+-.+|..++.. .++|.++...|+.++..|+++++
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 93 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALK 93 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555444444444332211 22344444444444444444443
No 273
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.82 E-value=20 Score=30.96 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.-..+..|+.+++.+.....+|...+..|+..+.+++.+...|++....-+.+.+.
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667778888888888888888888888888888888888888777666654
No 274
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=78.77 E-value=22 Score=32.98 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
..||+-|..|..+- -.-....-+.++|..|-.....++..-..|.........+|+..-.+.|.|-++.
T Consensus 107 ~~l~~ff~a~~~ls-~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~I 175 (322)
T TIGR02492 107 TYLNNFFNALQELA-KNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQI 175 (322)
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677766665 2112355677888888666666665555555444444444433333444433333
No 275
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=78.76 E-value=32 Score=28.63 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=45.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKIN-----ELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~-----~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
...|..++..--.-+.+|..+.++|+-+..++..+.+ .+..-...+..|++.+...+..|..|++.+.
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667776667777777777777776666655543 3333335566777788888888888877753
No 276
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=78.52 E-value=7.4 Score=39.31 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
...+..++..+.++|.++...|++++++|+++++.+.
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677788888888888888888888888888743
No 277
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.48 E-value=11 Score=39.50 Aligned_cols=84 Identities=24% Similarity=0.328 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHhHHHHH
Q 026702 86 RRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELK-------CEKNELRDEKQ 158 (235)
Q Consensus 86 RRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk-------~EknELr~E~~ 158 (235)
|-..++.++.+|..=|--.+..-.+.-+=..+-...+.+|+...+.++.+...|+++++++| +...||.+||-
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34456666666666551000000111122233334455666666777777777777777655 45678888888
Q ss_pred HHHHHHHHHHH
Q 026702 159 RLKNEKENLER 169 (235)
Q Consensus 159 ~Lk~e~e~Le~ 169 (235)
.|+.++.-|.+
T Consensus 108 slQKqvs~Lk~ 118 (717)
T PF09730_consen 108 SLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 278
>PRK00295 hypothetical protein; Provisional
Probab=78.46 E-value=18 Score=26.76 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
+.|.+|+.++.-++..++.|...+-...+++..|+.+...|..++..++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3588899999989988888888888888888888888888877777765
No 279
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=78.43 E-value=3.2 Score=36.12 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNE--KLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~--~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
.++|+.+.+|.+.| - + .+||-.|.++.+--...+. ++..||-++..++.+.+||.. |+..++
T Consensus 59 a~lnkAY~TLk~pL-~-R-------------A~Yilkl~g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~-l~~lk~ 122 (168)
T KOG3192|consen 59 AELNKAYDTLKDPL-A-R-------------ARYLLKLKGQEQTSNELSTDPEFLMEVLEYHEAISEMDDEED-LKQLKS 122 (168)
T ss_pred HHHHHHHHHHHhHH-H-H-------------HHHHHHHhCCCCchhhhccCHHHHHHHHHHHHHHHhccCcHH-HHHHHH
Confidence 46999999999988 3 2 3899888885443333333 677888888888888888866 444444
Q ss_pred HHHH
Q 026702 166 NLER 169 (235)
Q Consensus 166 ~Le~ 169 (235)
.++.
T Consensus 123 q~q~ 126 (168)
T KOG3192|consen 123 QNQE 126 (168)
T ss_pred HHHH
Confidence 4333
No 280
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=78.39 E-value=27 Score=36.28 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026702 90 LNDRFMEL 97 (235)
Q Consensus 90 lNd~F~~L 97 (235)
++..+..+
T Consensus 689 l~~~l~~~ 696 (1179)
T TIGR02168 689 LEEKIAEL 696 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 281
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.16 E-value=11 Score=39.57 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 158 QRLKNEKENLERQVK 172 (235)
Q Consensus 158 ~~Lk~e~e~Le~qlk 172 (235)
..++.|.+.+-.+++
T Consensus 575 ~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 575 KALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 282
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.13 E-value=26 Score=28.29 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.....|+.++..-...++.+.+|.+-|.=.|++|-..++.|+.+|...
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555677777787888888888888888888888853
No 283
>PF14645 Chibby: Chibby family
Probab=78.11 E-value=7.6 Score=31.64 Aligned_cols=44 Identities=30% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 128 EAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
..+.|+++|..|++|.+.|+-+.+=|-|=.+...+|..-+|.+|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555545554444445555555443
No 284
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.96 E-value=16 Score=34.21 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
|..+-..+...+.++++++.....|+.+.++...++.+|+.+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444
No 285
>PRK03918 chromosome segregation protein; Provisional
Probab=77.76 E-value=20 Score=36.92 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhc
Q 026702 89 RLNDRFMELASIL 101 (235)
Q Consensus 89 klNd~F~~Lr~lL 101 (235)
.+...+..|...+
T Consensus 173 ~~~~~~~~l~~~l 185 (880)
T PRK03918 173 EIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 286
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=12 Score=39.92 Aligned_cols=38 Identities=32% Similarity=0.536 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+....+|..|.+++.|++.-+..|-.|+-.|..||+.+
T Consensus 482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 33445566777777777777777777777777777764
No 287
>PRK00736 hypothetical protein; Provisional
Probab=77.62 E-value=18 Score=26.64 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
..|.+|+.++.-++..++.|...+-.-.+++..|+.+...|..++..++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45888999998888888888888888888888888888888776666543
No 288
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.51 E-value=12 Score=33.83 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..|+.+......+...|..++.++..++..|.++...-..|.++|+.+|..
T Consensus 63 ~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 63 KQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445566666777777777777777777777777776655
No 289
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=77.50 E-value=21 Score=29.04 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
||+..+.+|..-| - ..=.+...-|-.=+.-+++++..++.++...+.|+.-.+.|+.++-+=-++...+....++|.
T Consensus 37 kL~~~i~eld~~i-~--~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 37 KLNFDIQELDKRI-R--SQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHH-H--HHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455555555555 1 111122222222233445555555555555555555555555555554444455555555554
Q ss_pred H
Q 026702 169 R 169 (235)
Q Consensus 169 ~ 169 (235)
+
T Consensus 114 ~ 114 (132)
T PF10392_consen 114 Q 114 (132)
T ss_pred H
Confidence 4
No 290
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=77.42 E-value=9.3 Score=36.10 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh-cCCCCCCC
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL-SSQPAFLP 182 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~-~~~p~~~p 182 (235)
|+..|+....+.+++....+.+..+-++|.....+-|.|.|++++.|.++ ++.|.||.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44445555555555555555555666666666667777777777777664 44555543
No 291
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.39 E-value=22 Score=37.07 Aligned_cols=35 Identities=34% Similarity=0.377 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
..++|+.++.+|+.++...++.+..|+.|..+||.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777666666666666665555544
No 292
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.36 E-value=3.2 Score=32.77 Aligned_cols=44 Identities=32% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 128 EAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
-+..|..++..|..++.+|+.++++|+.+...++...+.|++.|
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 34555556666666666666666666666666666666666554
No 293
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=77.35 E-value=20 Score=26.15 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhHhH-HHHHHHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELR-DEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 139 L~~ei~~Lk~EknELr-~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+-++.|..|.+.+- .++..++..+...+.+|+.
T Consensus 37 a~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~ 72 (79)
T PF05008_consen 37 AEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKK 72 (79)
T ss_dssp HHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443 3344555555555444443
No 294
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=77.30 E-value=16 Score=28.66 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=5.3
Q ss_pred HHHHHHHhhc
Q 026702 92 DRFMELASIL 101 (235)
Q Consensus 92 d~F~~Lr~lL 101 (235)
++|.-|-+++
T Consensus 3 dkI~rLE~~~ 12 (86)
T PF12711_consen 3 DKIKRLEKLL 12 (86)
T ss_pred hHHHHHHHHh
Confidence 4445555555
No 295
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.13 E-value=13 Score=35.45 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+++...++.|+.+++.+..|+.|+..|....+.-.+||.++|..
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666677777777777777777777777777777655
No 296
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.08 E-value=14 Score=36.95 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
.+...+-+.+|.+++..++.+...+.+.+..|+..-.+.++....++..+..++..++..+.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66666667777777777777777777777777777777777777777777777776666433
No 297
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.04 E-value=24 Score=36.12 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=4.7
Q ss_pred ccccccccc
Q 026702 11 FDCGLLDDI 19 (235)
Q Consensus 11 ~d~~~~~~~ 19 (235)
+-|+|.+.|
T Consensus 137 L~YPf~~si 145 (581)
T KOG0995|consen 137 LKYPFLLSI 145 (581)
T ss_pred CCCCcccch
Confidence 445555544
No 298
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=76.92 E-value=11 Score=29.33 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
.+|+++ |.+++..|+...+.|+.++..++.+.++++...
T Consensus 86 ~eA~~~---l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 86 EEAIEF---LKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444 455555555555555555555555555555443
No 299
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.92 E-value=26 Score=27.58 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=27.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
.|++.|.+ .|=..-++++.+|+.++..|..|+..|+.+++--|.|++.|
T Consensus 34 ~KV~~LKk--sYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 34 TKVKALKK--SYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 23344555666666666666666666666665555555544
No 300
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.90 E-value=14 Score=36.88 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.+.+..+..+|..|+.||+-
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666777777775
No 301
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.80 E-value=15 Score=34.43 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
...+.+++..+.+...++.++..|+.+.++...|+..|+.+++..+..|..
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 334444444444555555555555555555555566666665555555443
No 302
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.78 E-value=11 Score=40.78 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKL 139 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L 139 (235)
+++|+.+.++|++.+-.|
T Consensus 370 fkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666655443
No 303
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.73 E-value=17 Score=35.08 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+.++..+.+|.++...|+.++..|+.+++..
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666667777777777777777777764
No 304
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=76.55 E-value=7 Score=33.13 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNE----KLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~----~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+||.+...|++... ....|++.|...-..+.+-...|+++.|+-+++|++
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA 112 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA 112 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh
Confidence 468888888887654 566778888888888888889999999999999887
No 305
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.46 E-value=13 Score=35.84 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 133 KVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 133 k~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+..-+.|.+-.++|+.++..|..+.+.|+..++-|..
T Consensus 238 kRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 238 KRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3333333333344444444444444444444444433
No 306
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=76.35 E-value=10 Score=31.38 Aligned_cols=75 Identities=29% Similarity=0.424 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 78 SKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQL-RDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 78 ~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~L-r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+|-.+|..+ -+++.+..|-..| +. .|.|-+-...++ ++.-++++.....-..-|-.|..|+|-|++|
T Consensus 44 nqqLreQqk--~L~e~i~~LE~RL---Ra-------GlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eE 111 (120)
T PF10482_consen 44 NQQLREQQK--TLHENIKVLENRL---RA-------GLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEE 111 (120)
T ss_pred cHHHHHHHH--HHHHHHHHHHHHH---hc-------ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 343445443 3566666666666 21 234444444444 3344456554443334578899999999999
Q ss_pred HHHHHHHH
Q 026702 157 KQRLKNEK 164 (235)
Q Consensus 157 ~~~Lk~e~ 164 (235)
|..|+.|+
T Consensus 112 N~~L~eEl 119 (120)
T PF10482_consen 112 NKKLKEEL 119 (120)
T ss_pred HHHHHHHh
Confidence 99888775
No 307
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=76.25 E-value=33 Score=26.88 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 026702 157 KQRLKNEKENL 167 (235)
Q Consensus 157 ~~~Lk~e~e~L 167 (235)
|.+|+.|+.+|
T Consensus 53 N~rL~ee~rrl 63 (86)
T PF12711_consen 53 NIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 308
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.18 E-value=32 Score=27.97 Aligned_cols=19 Identities=42% Similarity=0.524 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026702 132 LKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~Ek 150 (235)
|+.+...++.++..|+.+.
T Consensus 64 lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 64 LREELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333
No 309
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=76.17 E-value=2.6 Score=39.94 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
+|||=|+++|.-|+..|..|-||+|.||.
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 89999999999999999999888777664
No 310
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.14 E-value=12 Score=33.71 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|..++..+......|.+++..-..|...|+.+....+...++-...|..
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555556666666665555555555555544
No 311
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=76.11 E-value=7.4 Score=32.92 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~ 138 (235)
....-.++|+.|+.+|++|+..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHc
Confidence 3344555566666666665544
No 312
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=75.90 E-value=36 Score=26.69 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
......++..|+.+...|+.++.+++..|+.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777665
No 313
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=75.89 E-value=18 Score=32.26 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINEL--KCEKNELRDEKQRLKNEKENLERQVKALSSQPAF 180 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L--k~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~~ 180 (235)
-.|...-+.+++.+++.|+.+.+.|++-.+.- ..+.-+++.|..+.+.|+|.++.|++.+...-.|
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 33444444589999998888887776544321 2334478889999999999999999998876543
No 314
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.77 E-value=17 Score=40.37 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDE 128 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~ 128 (235)
..-|.++|+-+.+++.+
T Consensus 222 i~~l~e~~~~~~~~~~~ 238 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDE 238 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 315
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=75.74 E-value=18 Score=32.28 Aligned_cols=43 Identities=28% Similarity=0.217 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
.++.+.-+.|...-.++..|++.|.+|+++.++|+....-|-+
T Consensus 41 ~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd 83 (195)
T PF10226_consen 41 RLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD 83 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 3445555566666667777777777777777777665554444
No 316
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=75.63 E-value=17 Score=32.21 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
..++-+.+..+...|...+..|..+...|...+..|.+.++.|+.|...++
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e 204 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLE 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667788888999999999999999999999999999999998887765
No 317
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.51 E-value=14 Score=37.42 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
+.|++|+.+.+.++.+..+++.++..++.+..++.++...++.++.+++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555666666666666666666666666665554443
No 318
>PRK15396 murein lipoprotein; Provisional
Probab=75.48 E-value=19 Score=27.71 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
-|.+|..+|+.|..+.++|..++..++.....-.+|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~e 61 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDD 61 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777666666666655554444
No 319
>smart00340 HALZ homeobox associated leucin zipper.
Probab=75.47 E-value=9.6 Score=26.47 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCC
Q 026702 138 KLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPA-FLPH 183 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~-~~ph 183 (235)
+.+-+-+.||+--+.|.+||.+|+.|+ ++|+++...|. ||++
T Consensus 2 QTEvdCe~LKrcce~LteeNrRL~ke~----~eLralk~~~~~~m~~ 44 (44)
T smart00340 2 QTEVDCELLKRCCESLTEENRRLQKEV----QELRALKLSPPLYMQH 44 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccCCcccccC
No 320
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=75.44 E-value=14 Score=32.36 Aligned_cols=7 Identities=29% Similarity=0.155 Sum_probs=3.2
Q ss_pred Ccccccc
Q 026702 55 NLDAFKE 61 (235)
Q Consensus 55 ~~~~~~e 61 (235)
+.+|..|
T Consensus 104 CCDGSDE 110 (176)
T PF12999_consen 104 CCDGSDE 110 (176)
T ss_pred cCCCCCC
Confidence 3344444
No 321
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=75.38 E-value=11 Score=37.36 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
.+.++|+.+...|.+++++|..+-.
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~ 207 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEA 207 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 322
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=75.34 E-value=18 Score=34.97 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026702 152 ELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.++.....|..+++.|+.+++.
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444
No 323
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.21 E-value=17 Score=38.13 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 026702 163 EKENLERQVKA 173 (235)
Q Consensus 163 e~e~Le~qlk~ 173 (235)
+.+.+-.+|+.
T Consensus 585 ~~~~~i~~lk~ 595 (782)
T PRK00409 585 EADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHH
Confidence 33333334444
No 324
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=75.10 E-value=30 Score=34.24 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
..||+-|..|..+- -.-....-+..+|..|=.....++.....|+.....+..+|+..=.++|.|-++...|-.+
T Consensus 119 ~~l~~ff~a~~~la-~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~ 193 (507)
T PRK07739 119 KVLDQFWNSLQELS-KNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQ 193 (507)
T ss_pred HHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666665 2112355678888888666666665555555444444444444444444444443333333
No 325
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.06 E-value=41 Score=29.55 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+...+....+++.+...|..|++.|++.|+.
T Consensus 159 l~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 159 LASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444467888888999999999998875
No 326
>PLN02678 seryl-tRNA synthetase
Probab=74.99 E-value=19 Score=35.49 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=15.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+|..+..+|.+|...|..+...++.+|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555
No 327
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.95 E-value=5.1 Score=38.71 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
.|+-.-.||.+..+|++||+.|..|++.|+.
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455556777777777777777766666633
No 328
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.92 E-value=23 Score=33.47 Aligned_cols=61 Identities=28% Similarity=0.458 Sum_probs=28.2
Q ss_pred chhhhHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDE----AQKLKVSNEK-------LLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~----vq~Lk~~n~~-------L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+|..+|.+.+.-+++.+.+ +..+....+. +.+.+++|+.+++++-++.+.|+.+.+.+...
T Consensus 13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~k 84 (294)
T COG1340 13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAK 84 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555433 2233333233 33344444555555555555555555544443
No 329
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=74.88 E-value=14 Score=29.43 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+.+|++| |+.+++.|++..+.|+.++..++.+.+.+....
T Consensus 85 ~~eA~~~---l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 85 LEEAIEF---LDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 556666666666666666666666666555543
No 330
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.82 E-value=39 Score=36.72 Aligned_cols=33 Identities=36% Similarity=0.399 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
..++.+..+|..+..++..+...++.++++++.
T Consensus 880 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 912 (1163)
T COG1196 880 KELEEEKEELEEELRELESELAELKEEIEKLRE 912 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444333
No 331
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.76 E-value=28 Score=30.53 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.|+.++..++.....|...+..|+.++.+++..+..|.+.....+.+.+
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555555555555544444444444433
No 332
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=74.46 E-value=14 Score=30.95 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 81 CREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQ----MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 81 ~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~----yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
..|=+|=..|+++|..=..... -+.++|..-|. .|+..+..+++|+.++..-..||..|+.+..++...
T Consensus 51 VsEL~~Ls~LK~~y~~~~~~~~-------~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 51 VSELRRLSELKRRYRKKQSDPS-------PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666654332221 23334443333 333334445555555555555555555555555554
Q ss_pred HHHH
Q 026702 157 KQRL 160 (235)
Q Consensus 157 ~~~L 160 (235)
|..|
T Consensus 124 n~~L 127 (131)
T PF04859_consen 124 NKSL 127 (131)
T ss_pred HHHh
Confidence 4444
No 333
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.37 E-value=7.8 Score=42.05 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHH
Q 026702 106 PPKMDKTVLLADAVQMVTQLRDEAQKL 132 (235)
Q Consensus 106 ~~K~dKasIL~dAI~yIk~Lr~~vq~L 132 (235)
++|+.|.++|.|=+.-|..|+..+...
T Consensus 397 NQkl~K~~llKd~~~EIerLK~dl~Aa 423 (1041)
T KOG0243|consen 397 NQKLMKKTLLKDLYEEIERLKRDLAAA 423 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999998888888765433
No 334
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.33 E-value=22 Score=34.60 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=14.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 146 LKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
|..-...+++||+.|+.+++.+.++.
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444455666666666666555544
No 335
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=74.22 E-value=19 Score=28.25 Aligned_cols=26 Identities=38% Similarity=0.341 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek 150 (235)
+.=++.+++++|++|++|...|+.|+
T Consensus 21 ~~~k~~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 21 LWWKVKKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 336
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=74.18 E-value=30 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 90 LNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 90 lNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
+|..|..+..++-- .-.|+-.++. .+.-+.+++.++.+|+.++..|...
T Consensus 85 f~~~~k~~~~ifke---gg~d~~k~~~-~l~~L~e~snki~kLe~~~k~L~d~ 133 (163)
T PF03233_consen 85 FESFFKDLSKIFKE---GGGDKQKQLK-LLPTLEEISNKIRKLETEVKKLKDN 133 (163)
T ss_pred HHHHHHHHHHHHHh---cCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 46677778888722 2334433322 5555555555555555555555443
No 337
>PRK00846 hypothetical protein; Provisional
Probab=74.12 E-value=25 Score=26.98 Aligned_cols=50 Identities=6% Similarity=0.030 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
-..|.+|+.++.-.+...+.|...+-....++..|+.....|...+..++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778888888888888888888777777788888887777766665555
No 338
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.04 E-value=17 Score=40.89 Aligned_cols=88 Identities=10% Similarity=0.197 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPGRP--PKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~--~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
..++..++.++.+|..++ -.+. .=.|-..+|++.-+...+|+.++.++++....+.++.+..+.+.++...+...++
T Consensus 948 ~~~~~~~~~~~~~l~~~~-~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slk 1026 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEVV-QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888899999988 4221 2446677888888888889999988888888888888877777777777655555
Q ss_pred HHHHHHHHHHH
Q 026702 162 NEKENLERQVK 172 (235)
Q Consensus 162 ~e~e~Le~qlk 172 (235)
..++.++++++
T Consensus 1027 sslq~~~e~L~ 1037 (1486)
T PRK04863 1027 SSYDAKRQMLQ 1037 (1486)
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 339
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.98 E-value=41 Score=34.42 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 026702 84 KMRRDRLNDRFMELASIL 101 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lL 101 (235)
|.+|.....++..|+..+
T Consensus 250 ~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 250 RANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455566677666
No 340
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=73.63 E-value=9.2 Score=37.91 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=13.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
++++..|+.+|.+|..+|.+++++|+
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le 203 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELE 203 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 341
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=73.33 E-value=25 Score=25.79 Aligned_cols=26 Identities=8% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
++++++.+++...+.+.+.+..|+..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~ 28 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKR 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444444333333
No 342
>PRK14127 cell division protein GpsB; Provisional
Probab=73.21 E-value=8.5 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
...|.-+..|..++..|+.++..|+.++.+++.
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444333333333
No 343
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=73.10 E-value=13 Score=31.08 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 140 LGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 140 ~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..++....-.++|+.|...=..|+..|..+|..
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443
No 344
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=73.06 E-value=34 Score=26.41 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=13.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 150 KNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+|-.|...|..|+-+||+++-.
T Consensus 56 ~keLL~EIA~lE~eV~~LE~~v~~ 79 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLEQKVLS 79 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666665544
No 345
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=73.00 E-value=5.9 Score=39.67 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+|++|++|+++|+++...|...+++.|++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 55566666666666666666666666664
No 346
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=72.97 E-value=22 Score=29.23 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=24.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
|||-.|..... +|..++..|-.+...|.+.+.+|-.|..-||-||..|+..+.
T Consensus 1 mdKkeiFd~v~----~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 1 MDKKEIFDQVD----NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 46666654433 344444444444444444444444444444444444444433
No 347
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=72.93 E-value=17 Score=28.23 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
.|+...+.+..+++.|..++..+..+...|+.++..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444433
No 348
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.91 E-value=9.3 Score=35.54 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=17.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 146 LKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
|+.++.+++.|...++.|+++++.+++....+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (364)
T TIGR01242 11 LEDEKRSLEKEKIRLERELERLRSEIERLRSPP 43 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333334444444445556666666666655555
No 349
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=72.90 E-value=35 Score=28.53 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 113 VLLADAVQMVTQLRDEAQ-KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq-~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.....+|.-|-.|.++|= ...++...|..|.+-||...-.+++--..=+..++-|+.||+.+
T Consensus 63 ~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 63 MFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 477888888888887764 34456677777777777777666666666677888899888763
No 350
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=72.84 E-value=11 Score=38.40 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+|..-=-+||++|=++++.||.+|+.+..++++++.|....+++
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445566666666666666666655555555555444443
No 351
>PLN02678 seryl-tRNA synthetase
Probab=72.58 E-value=31 Score=34.07 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 152 ELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+|.++...|+.++..|+.+++.+.
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666665543
No 352
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=72.53 E-value=35 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+.|+.-++|+.++..-+++++.|..-+..|+...--+.+-+..|+.+...++.
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888888888888888877777777777777776666
No 353
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=72.51 E-value=33 Score=33.46 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
.||+-|..|..+- -.-....-+..+|..|-..+..++.....|.+....+..+|+..-.++|.|-++...|
T Consensus 108 ~l~~ff~a~~~la-~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~L 178 (456)
T PRK07191 108 GLNNFFSALSAAT-QLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADY 178 (456)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666665 2112355677888888666666665555555444444444333334444444433333
No 354
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=72.50 E-value=11 Score=28.59 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGK 142 (235)
Q Consensus 129 vq~Lk~~n~~L~~e 142 (235)
...+..++++++.+
T Consensus 37 ~~~~~~~l~~l~~~ 50 (97)
T PF04999_consen 37 SRQLFYELQQLEKE 50 (97)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 355
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.34 E-value=22 Score=30.92 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
++..+.+|..-|
T Consensus 81 ~~~~i~~l~~~i 92 (188)
T PF03962_consen 81 LEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 356
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=72.29 E-value=15 Score=29.12 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+.+|++| |+.++..|....+.|...+..++.+.+++++.
T Consensus 84 ~~eA~~~---l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 84 AEEAIEF---LKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666 55666666676677776676666666665554
No 357
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.25 E-value=46 Score=33.35 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+++.|+..+..|..|..+||.....||...++|....+.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr 336 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQR 336 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456677778888888889999999999988888765543
No 358
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.15 E-value=9.1 Score=31.24 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|++.-.+.+++..+|-.+.-.|+....+|.+..+-..+|+..|+.|..-|-|-++.+
T Consensus 47 a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 47 AVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 444455566777777777888888899999999999999999999998888888773
No 359
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.98 E-value=22 Score=33.51 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGK-------INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~e-------i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-|+..+..|++++..|+.+ .+.+|.....|+.|...|+.++......|+.
T Consensus 116 ~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 116 LLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444 3334444455666666666666666555555
No 360
>PLN02320 seryl-tRNA synthetase
Probab=71.98 E-value=59 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=16.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+|+.+..+|+++...|+.+...++.++..
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666665555
No 361
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.90 E-value=43 Score=34.33 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRD 127 (235)
Q Consensus 115 L~dAI~yIk~Lr~ 127 (235)
|.++=..|.+|+.
T Consensus 389 L~d~e~ni~kL~~ 401 (594)
T PF05667_consen 389 LPDAEENIAKLQA 401 (594)
T ss_pred hcCcHHHHHHHHH
Confidence 3333344444443
No 362
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=71.73 E-value=14 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.+|+.|+++. .+++++..+...|+.|..+|...|..-
T Consensus 73 ~en~~Lk~~l----~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 73 LENEELKKEL----AELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444444443 334445556667777777777776653
No 363
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=71.65 E-value=31 Score=35.78 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
.|++-|..|..+- -.-..-.-+..+|..|-..+.+++..-..|.+....+..+|+..-.++|.|-++...|-.+|
T Consensus 108 ~L~~Ff~alq~la-~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI 182 (676)
T PRK05683 108 ALQRFFTALQTAA-ANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQI 182 (676)
T ss_pred HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666555 21123456788888887777766665555555444444444444444444444433333333
No 364
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=71.58 E-value=1.4 Score=35.36 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.+.-.+-.++.+|..+.+.|+.|...|+.+.+.|+.+..
T Consensus 6 ~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 6 NEKFRLAKELSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp -------------------------------------HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333334444444444444444444445555544443
No 365
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=71.41 E-value=33 Score=33.71 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
.||+-|..|..+- -.-....-+..+|..|-..+..++.....|+.....+..+|+..-.++|.|-++..
T Consensus 103 ~l~~ff~a~~~la-~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia 171 (483)
T PRK07521 103 RLSDFQAALQTAA-SSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFE 171 (483)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666554 11113445778888887766666655555555444444444333344444433333
No 366
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=71.29 E-value=8.7 Score=35.72 Aligned_cols=36 Identities=36% Similarity=0.380 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.+++.|+++.+++..|.++++.|...++.+++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444455555555555555556666655544
No 367
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=71.14 E-value=8.9 Score=29.46 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=9.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e 165 (235)
++.|+.++..+++++..++++++
T Consensus 79 l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 79 LEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 368
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.04 E-value=39 Score=34.27 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+.+++.++|+.+++. .++..+.-+..|..+++.+++++..+.
T Consensus 216 ~~~~e~d~lk~e~~~---~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 216 KIKEEFDKLKKEGKA---DKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444444432 222233333344444555555554443
No 369
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=70.89 E-value=23 Score=32.73 Aligned_cols=49 Identities=27% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+-+...++|..+.+.|++++..+.+ +..+.+.|++||.+|+....--+.
T Consensus 63 ~~~~~~~~~~~en~~Lk~~l~~~~~----~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 63 EFLKSLKDLALENEELKKELAELEQ----LLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCccc
Confidence 3445556666677777777766543 346666777777777766554333
No 370
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.83 E-value=16 Score=38.01 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 026702 125 LRDEAQKLKVS 135 (235)
Q Consensus 125 Lr~~vq~Lk~~ 135 (235)
|+.++++|+.+
T Consensus 423 LE~dvkkLrae 433 (697)
T PF09726_consen 423 LEADVKKLRAE 433 (697)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 371
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=70.81 E-value=30 Score=34.64 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+++.....+.+.+.++..+..+++-....|.++...|+.+++.
T Consensus 449 ~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 449 EKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555555555555666666666666655
No 372
>PRK10698 phage shock protein PspA; Provisional
Probab=70.49 E-value=40 Score=29.99 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..-+..|+.+.+..+...++|+..+..|+..+.+++..+..|.+....-+.+.+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666666666666666666555555554444433
No 373
>PF13514 AAA_27: AAA domain
Probab=70.40 E-value=28 Score=37.57 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=51.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKV---SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~---~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..+...|..++.-+++|+.+++.... ....|..+...+..+..+|+.+...++.+..+|+.....
T Consensus 145 prg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 145 PRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777899999999999999988775 456677778888888888888888888888777775443
No 374
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=70.30 E-value=48 Score=34.49 Aligned_cols=48 Identities=40% Similarity=0.382 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC--------CCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026702 81 CREKMRRDRLNDRFMELASILDPGR--------PPKMDKTVLLADAVQMVTQLRDEAQKLK 133 (235)
Q Consensus 81 ~~ERrRRdklNd~F~~Lr~lLpP~~--------~~K~dKasIL~dAI~yIk~Lr~~vq~Lk 133 (235)
..|+.|+ .--.+|.+++ ||. ..+.|=-+++.-|+..|.+|+.+++.++
T Consensus 283 ~ve~ar~----~F~~EL~si~-p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 283 LVEKARH----QFEQELESIL-PGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHH----HHHHHHHHhc-CCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566665 3347899999 743 2355556899999999999999988855
No 375
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.27 E-value=14 Score=36.75 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=24.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
....||.+... +..|+.+.+++......++.++++++.+..++..+...|+.++
T Consensus 145 ~~~~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql 198 (563)
T TIGR00634 145 EQRQLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQL 198 (563)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555444 4445555555444444444444444444444444444333333
No 376
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.26 E-value=46 Score=25.42 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
.|++++..|+....-=..-|.+|....-|.+....+++.+...|-..|+.+.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666655444444677777777777777777777777777777653
No 377
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=70.24 E-value=40 Score=34.47 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
.|++-|..|..+- -.-..-.-+..+|..|-....+++.....|+.....+..+
T Consensus 120 ~l~~ff~al~~ls-~~P~~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~ 172 (627)
T PRK06665 120 RLDDFWDSWQDLS-NYPEGLAERQVVLERAQSLGERIHDRYRSLERIRDMANDE 172 (627)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555544 1112355678888888766666665555544433333333
No 378
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=70.19 E-value=73 Score=27.66 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGR-PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK-NELRDEKQRLKNEKE 165 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~-~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek-nELr~E~~~Lk~e~e 165 (235)
+.|++++.....-+ +.- ..=-.-.-+++++-+-|..|.+++..|+...+-+-.++.-++.+. .+++-+.+.|..++.
T Consensus 47 d~imer~~~ieNdl-g~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~ 125 (157)
T COG3352 47 DAIMERMTDIENDL-GKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVN 125 (157)
T ss_pred HHHHHHHHHHHhhc-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHH
Confidence 45677777777666 311 000011124566666666777777776666666555544444443 233444556666666
Q ss_pred HHHHHHHH
Q 026702 166 NLERQVKA 173 (235)
Q Consensus 166 ~Le~qlk~ 173 (235)
+|+..+.+
T Consensus 126 el~~i~em 133 (157)
T COG3352 126 ELKMIVEM 133 (157)
T ss_pred HHHHHHHH
Confidence 66655544
No 379
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=69.95 E-value=50 Score=25.65 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 111 KTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 111 KasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
.+-|..+.-+.+..|..+++.++.....|..+++++..+.++++.+...|
T Consensus 54 ~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 54 NVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555554433
No 380
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.88 E-value=42 Score=33.41 Aligned_cols=86 Identities=17% Similarity=0.334 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKV---SNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~---~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
-.|-+.|++++..|..+. + |-. .-+.+-++|+.+++.+++.++. ..+.|+.++..++.+..++-.+....
T Consensus 300 p~~L~ele~RL~~l~~Lk---r--Kyg--~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLK---R--KYG--ASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888777 2 222 2477778888888888887665 45666677777777766666665555
Q ss_pred HHHH-----HHHHHHHHHhcC
Q 026702 161 KNEK-----ENLERQVKALSS 176 (235)
Q Consensus 161 k~e~-----e~Le~qlk~~~~ 176 (235)
+.+. +.+..+|+.++.
T Consensus 373 R~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 3332 234445555544
No 381
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.72 E-value=65 Score=32.42 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
..+|+.+++.+..|++++++++.
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 382
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=69.72 E-value=12 Score=36.99 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=9.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
.|+.|..-+++|.+.|+.+++.|
T Consensus 278 ~l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 383
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.57 E-value=30 Score=34.51 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~ 173 (235)
.|..++.++..+|..
T Consensus 341 ~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 341 SLEAELNKTRSELEA 355 (522)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444443
No 384
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.52 E-value=49 Score=29.52 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=21.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+..+.|...|+.|+..++.++..|+.|+..+..
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666677777777777766544
No 385
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.45 E-value=39 Score=33.08 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--------CCCCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-hHh
Q 026702 84 KMRRDRLNDRFMELASILDPG--------RPPKMDKTVLLADAVQMVTQLR-DEAQKLKVSNEKLLGKINELKCEK-NEL 153 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~--------~~~K~dKasIL~dAI~yIk~Lr-~~vq~Lk~~n~~L~~ei~~Lk~Ek-nEL 153 (235)
|..-..|-+.+..|..-+ .. -.....|..-|.+-+.=+.+|+ .++..||+++...++++.+.-.|+ .++
T Consensus 225 k~~~~~L~~~~e~Lk~~~-~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi 303 (395)
T PF10267_consen 225 KESQSRLEESIEKLKEQY-QREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDI 303 (395)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 334556667777777644 10 0123445555555555555554 456667777766666676666666 456
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 154 RDEKQRLKNEKENLE 168 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le 168 (235)
.|=....++.+.+||
T Consensus 304 ~E~~Es~qtRisklE 318 (395)
T PF10267_consen 304 WEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666778999999999
No 386
>PRK11415 hypothetical protein; Provisional
Probab=69.45 E-value=23 Score=26.55 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026702 128 EAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
...+|..+...|..+|..+..
T Consensus 18 ~F~~L~~~h~~Ld~~I~~lE~ 38 (74)
T PRK11415 18 RFMSLFDKHNKLDHEIARKEG 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345555555556555555444
No 387
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.37 E-value=16 Score=27.49 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 89 RLNDRFMELASILDPGRP--PKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~--~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
++..-..+|..+- +++. -...++=|+.+.-+++..|....+.++.+.++|..+.+++..+.++++..
T Consensus 30 ~~~~~~~eL~~l~-~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 30 ELELTLEELEKLD-DDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHTSS-TT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777754 4421 12334444444445556666666666666666655555555555554443
No 388
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.21 E-value=29 Score=26.33 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
+++..++++++.+..+|+.|.+.|+.|...
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444444444
No 389
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.16 E-value=26 Score=33.22 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+++...+++|..|..++-.|+.....+-.|.|.|.++|..
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455566666666666666666666666666665554
No 390
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.11 E-value=21 Score=31.54 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHH
Q 026702 93 RFMELASILDPGRPPKMDKTVLLADAVQMVTQL 125 (235)
Q Consensus 93 ~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~L 125 (235)
|...|+.-+ .....+-+.-+.-+.++|.++
T Consensus 47 r~lg~g~~v---~i~PLnEa~Ave~gadlLgE~ 76 (181)
T KOG3335|consen 47 RALGLGGPV---VIRPLNEAAAVEAGADLLGEL 76 (181)
T ss_pred HHhcCCCCc---ccCCCCHHHHHHHHHHHHhhH
Confidence 444455433 345667777777777777776
No 391
>PLN03188 kinesin-12 family protein; Provisional
Probab=68.91 E-value=33 Score=38.27 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=37.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH-----------------------HHHHH-hHhH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVS-----------NEKLLGKINE-----------------------LKCEK-NELR 154 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~-----------n~~L~~ei~~-----------------------Lk~Ek-nELr 154 (235)
-||++=+.-.++|+-|-.++..|+.+ |..|+.+.++ +.++. .+..
T Consensus 1145 akag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~e 1224 (1320)
T PLN03188 1145 ARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAE 1224 (1320)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677777776665555543 5555443211 11111 3567
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 155 DEKQRLKNEKENLERQ 170 (235)
Q Consensus 155 ~E~~~Lk~e~e~Le~q 170 (235)
+|+..++.++++|+..
T Consensus 1225 qe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1225 QEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888999999988764
No 392
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=68.88 E-value=48 Score=33.00 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
..||+-|..|..+. -.-....-+..+|..|-..+..++.....|......+.++|+..-.++|.|-++..
T Consensus 108 ~~l~~ff~a~~~ls-~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia 177 (547)
T PRK08147 108 TTMQDFFTSLQTLV-SNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIA 177 (547)
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666665 21123456788888887777666665555555444444444444444444444333
No 393
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.82 E-value=29 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
-+.+..|.++++.++.....|....++|+.+..+++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444444444444444443
No 394
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.77 E-value=19 Score=33.17 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++++.++++...+|+.|++.+....+..+.+-....+++|+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 5667777777777777777777777777776333333333333
No 395
>PRK14160 heat shock protein GrpE; Provisional
Probab=68.75 E-value=21 Score=32.00 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=3.6
Q ss_pred CCccCCC
Q 026702 226 QDHVLRP 232 (235)
Q Consensus 226 ~d~~l~p 232 (235)
.|-+|||
T Consensus 198 ~dRVLRp 204 (211)
T PRK14160 198 GDKVIRY 204 (211)
T ss_pred CCEeeec
Confidence 4555555
No 396
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=68.71 E-value=55 Score=25.68 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
.|++-+.--++++++++++|.++|+.|..|+.--..|...
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555567888888888899988888887666666543
No 397
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.46 E-value=33 Score=34.21 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
++.++...+..+.....++..|+....-|+.|....|.++.+|++.
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~ 331 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKER 331 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444443
No 398
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.39 E-value=28 Score=38.17 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 80 ACREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVT----QLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk----~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
...=+.+|+++++.+.+|.. = -+ ...=.+|.+.|..-|.|.+ +++..+..++.+...+..++.+...++.++.
T Consensus 654 ~~~L~~~k~rl~eel~ei~~-~-~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~ 731 (1141)
T KOG0018|consen 654 VDQLKEKKERLLEELKEIQK-R-RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIK 731 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHH-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 33447789999999998887 2 11 0123356666666666643 2333344444445555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026702 155 DEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 155 ~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+.+....++..|+.++..
T Consensus 732 r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 732 RKLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 399
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.38 E-value=36 Score=33.08 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
|+.|-.|-++-.+|..+.+.|+.+.+.+.++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~ 57 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKE 57 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445554444444333
No 400
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=68.30 E-value=40 Score=24.69 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRD 127 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~ 127 (235)
-+.||+++.++++-. |. ...++..+| -|+.+..++..
T Consensus 27 a~~i~~~i~~~~~~~-~~--~~~~~~~vl-aaLnla~e~~~ 63 (89)
T PF05164_consen 27 AELINEKINEIKKKY-PK--LSPERLAVL-AALNLADELLK 63 (89)
T ss_dssp HHHHHHHHHHHCTTC-CT--SSHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CC--CCHHHHHHH-HHHHHHHHHHH
Confidence 468999999999987 42 355666665 45555554443
No 401
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.19 E-value=40 Score=36.98 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..-|.++.+.+.+|..++.+|+.....|.++-+.++++-.+.-.++..|+-++..|++|+..
T Consensus 257 ~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 257 IDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITG 318 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Confidence 34566677777777777777777777776666666666555555566666666666666543
No 402
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=68.12 E-value=22 Score=27.50 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+.+.++-++.....|++.++.+..+..+++++...+...++++.+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666666666666666666666655555555555544
No 403
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.93 E-value=14 Score=28.91 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
|..+|.+|-.++
T Consensus 32 v~~kLneLd~Li 43 (109)
T PF03980_consen 32 VVEKLNELDKLI 43 (109)
T ss_pred HHHHHHHHHHHH
Confidence 445555555555
No 404
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.81 E-value=32 Score=37.66 Aligned_cols=60 Identities=25% Similarity=0.301 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
=+..-|.-+-.|+++.++|..+.+.|+++|..+.+.+-+|++.--.|+.|+++|+.....
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666777777777777777777777777777777777777666554
No 405
>PLN02320 seryl-tRNA synthetase
Probab=67.61 E-value=32 Score=34.63 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 152 ELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+|.+|...|+.++..|+.+++.+..
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666443
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.61 E-value=38 Score=35.36 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHH-----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 111 KTVLLADAVQMVT-----QLR-------DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 111 KasIL~dAI~yIk-----~Lr-------~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
--.+|.+|++.++ .+. .++..|+.+.+.-..++.+|+.+++.|++.-..|...+|
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777766443 222 223334433343334455555555555444444433333
No 407
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=67.32 E-value=96 Score=30.03 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHhHHHHHHHH
Q 026702 88 DRLNDRFMELASILD-PGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELK-----CEKNELRDEKQRLK 161 (235)
Q Consensus 88 dklNd~F~~Lr~lLp-P~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk-----~EknELr~E~~~Lk 161 (235)
+.+..++.+|...+. |+--....|+..+..-+..++.+-...+++++....+.+ ..+|- .-..++.+|...|.
T Consensus 10 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~-~~el~~~~D~e~~~~a~~e~~~l~ 88 (360)
T TIGR00019 10 ESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKE-AKEILEESDPEMREMAKEELEELE 88 (360)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCHHHHHHHHHHHHHHH
Confidence 456667888888771 211112333333333333333333333333332222211 11111 12345667788899
Q ss_pred HHHHHHHHHHHHhcC
Q 026702 162 NEKENLERQVKALSS 176 (235)
Q Consensus 162 ~e~e~Le~qlk~~~~ 176 (235)
.++++|+.+|+.+-.
T Consensus 89 ~~~~~~e~~l~~~ll 103 (360)
T TIGR00019 89 EKIEELEEQLKVLLL 103 (360)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988887443
No 408
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=67.22 E-value=32 Score=34.93 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhHHHHH-------HHHHHHH---HHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK-NELRDEKQ-------RLKNEKE---NLERQVK 172 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek-nELr~E~~-------~Lk~e~e---~Le~qlk 172 (235)
+++-+++|..||+-++.-+++++..+.|+..-.-+.++|+.-. .+|.+|.. +||.|+. +|+++|.
T Consensus 505 l~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~ 580 (641)
T KOG3915|consen 505 LTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALE 580 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 409
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=67.08 E-value=8.6 Score=29.54 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=10.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.|+.++.+|+++...+..+++-++.++
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 410
>PRK14161 heat shock protein GrpE; Provisional
Probab=67.08 E-value=23 Score=30.80 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
.+|..=+-+-+..++.+++.|+.+.+.|......+.++...+|
T Consensus 11 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 11 QTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344444444555555555544444444444444433
No 411
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.98 E-value=47 Score=31.94 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+.+..-++++..+...+-.++|+.+++++.
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555666666666666665
No 412
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.85 E-value=28 Score=30.99 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKV--SNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~--~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
-|.++|.|+ ..++..|.. +.+.+|++|.+|+.|..+.++....+|
T Consensus 97 ~l~~t~s~v---eaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 97 SLQQTCSYV---EAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHH---HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444442 234444443 334555555555555555555444433
No 413
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.47 E-value=83 Score=33.69 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026702 84 KMRRDRLNDRFMELASI 100 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~l 100 (235)
|||=.-||.+|.+=...
T Consensus 400 rRrLrilnqqlreqe~~ 416 (861)
T PF15254_consen 400 RRRLRILNQQLREQEKA 416 (861)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44444578888774443
No 414
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=66.42 E-value=39 Score=25.04 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 84 KMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
+..+..+.+.+..|...+ ........... -+..+.-+.....-+..|......+..++..++.+.+..+........+
T Consensus 11 ~~~~~~~~~~l~~L~~~~-~~~~~~~~~~~-~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQER-QEYQEQLSESQ-QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHT------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 026702 164 KENLERQVK 172 (235)
Q Consensus 164 ~e~Le~qlk 172 (235)
.+.++.-..
T Consensus 89 ~k~~e~L~e 97 (123)
T PF02050_consen 89 RKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 415
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.38 E-value=57 Score=33.12 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 80 ACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQ---LRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~---Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
..+|.+=+..-..+|.+|-..+ .-.-++|+.|..+ |..+....+++.+.+.+++++++..++.|+||
T Consensus 408 esRE~LIk~~Y~~RI~eLt~ql----------Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 408 ESREQLIKSYYMSRIEELTSQL----------QHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456554555566666666555 1222344455443 44555555667777888888888888888888
Q ss_pred HH
Q 026702 157 KQ 158 (235)
Q Consensus 157 ~~ 158 (235)
+.
T Consensus 478 L~ 479 (518)
T PF10212_consen 478 LE 479 (518)
T ss_pred HH
Confidence 65
No 416
>PHA01750 hypothetical protein
Probab=66.35 E-value=56 Score=24.88 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=18.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 146 LKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+++|.+.|+.|.+.++...+.|++|++.+
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666666666666666677766553
No 417
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=66.33 E-value=61 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.....|+.-.+++..-...-.++++.|+.+|...
T Consensus 142 ~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 142 KDSRNLKTDVDELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 3344455555555555544455566666666553
No 418
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=66.28 E-value=59 Score=29.28 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
-.+-..|+.-+..|++.+..++.++..+.+.+..|+.....|......++++++-|...
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766666666556655555555555555555554443
No 419
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=66.27 E-value=52 Score=33.64 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSN 136 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n 136 (235)
.|++-|..|..+- -.-....-+..+|..|-.....++.....|+...
T Consensus 113 ~l~~ff~al~~ls-~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~ 159 (613)
T PRK08471 113 DLQDYFNAWNDFA-SNPKDSAQKQALAQKTETLTNNIKDTRERLDTLQ 159 (613)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554 1111344567777777555555554444444433
No 420
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.25 E-value=69 Score=26.51 Aligned_cols=9 Identities=44% Similarity=0.660 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026702 159 RLKNEKENL 167 (235)
Q Consensus 159 ~Lk~e~e~L 167 (235)
.++.|+.+.
T Consensus 174 ~~~~El~~f 182 (218)
T cd07596 174 RLKEELKRF 182 (218)
T ss_pred HHHHHHHHH
Confidence 333333333
No 421
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.25 E-value=62 Score=27.83 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
.||..+|.-|..=+.++=..-+ .-+.+...|+.|..+++.+....-.+.++|+..
T Consensus 2 ~Ii~~ti~~ie~sK~qIf~I~E---~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~ 56 (159)
T PF05384_consen 2 KIIKKTIDTIESSKEQIFEIAE---QARQEYERLRKELEEVKEEVSEVIEEVDKLEKR 56 (159)
T ss_pred hHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888887777766543322 222334444455555555555555555555554
No 422
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.17 E-value=37 Score=32.70 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=5.6
Q ss_pred CCcccccCCC
Q 026702 210 GVSMWQFMPP 219 (235)
Q Consensus 210 g~~mwq~~pp 219 (235)
|.+++-.+|-
T Consensus 453 glpvLg~iP~ 462 (498)
T TIGR03007 453 GLPVLGVIPM 462 (498)
T ss_pred CCCeEEecCC
Confidence 5555555554
No 423
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=66.02 E-value=22 Score=34.50 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
.-.|++||++|+.|+.+|+.|...|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444
No 424
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=66.00 E-value=23 Score=33.04 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=34.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-+|-.||. .-+++|+.++.+++.+...+++. ..++....|+..+...|+.+.+.|+.+++.
T Consensus 167 d~rnq~l~---~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~ 227 (264)
T PF07246_consen 167 DRRNQILS---HEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSD 227 (264)
T ss_pred hhHHHHHH---HHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 45556664 44667777777776664454433 334445555555555555566666655554
No 425
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.96 E-value=57 Score=35.21 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=36.1
Q ss_pred chhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 110 DKTVLLADAVQ----MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 110 dKasIL~dAI~----yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
...+.|..|.+ .++.|+.++.+|+++.++-.++|..++.++.||+++...+
T Consensus 528 ~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 528 QRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33566665543 2455677788888888877788888888888888885433
No 426
>PRK10865 protein disaggregation chaperone; Provisional
Probab=65.95 E-value=69 Score=33.97 Aligned_cols=26 Identities=27% Similarity=0.126 Sum_probs=14.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKV 134 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~ 134 (235)
.+|-.+|.+.-+.|..|+.+.+.++.
T Consensus 406 ~~kp~~L~rLer~l~~L~~E~e~l~~ 431 (857)
T PRK10865 406 DSKPEELDRLDRRIIQLKLEQQALMK 431 (857)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555665555666666666555543
No 427
>PHA02557 22 prohead core protein; Provisional
Probab=65.94 E-value=67 Score=30.11 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH-------HHHHHHHHHHHHHHHHhc
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK-------QRLKNEKENLERQVKALS 175 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~-------~~Lk~e~e~Le~qlk~~~ 175 (235)
+.++.|..|+.+++..+.+...|..+...|+..++++..+. ..-..|++++...+..+.
T Consensus 138 e~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egve 203 (271)
T PHA02557 138 EKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLE 203 (271)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccc
Confidence 44556666666666666666665555555555555554442 244567777777666643
No 428
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.69 E-value=17 Score=34.52 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
.+..|++++..|+.+|..|+.|...|+.+..
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~ 191 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETD 191 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 3566888888888888888877666664444
No 429
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=65.64 E-value=59 Score=35.28 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.|+...+.|+.+..+||+.|..+...+.|-.-|...+.++.++|++.
T Consensus 109 riLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e 156 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE 156 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444333333333333333333333333333
No 430
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=65.63 E-value=51 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKL 139 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L 139 (235)
+.+...+.++|+.++.....+...+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~ 45 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKL 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555554443
No 431
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=65.62 E-value=59 Score=24.91 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE---LRDEKQRLKNEKE 165 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE---Lr~E~~~Lk~e~e 165 (235)
+|+..|.....+...+ . -..+.-..-++|+..++.++..++.|+..|......... -..|.+.=+.=+.
T Consensus 16 ~l~~~~~~~~~~~~~~---~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~ 87 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDT---S-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVS 87 (97)
T ss_dssp HHHHHHHHHHHHTTHC---C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC---C-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHH
Confidence 4455555555555221 1 334445666778888888888888888776554433221 2344555555566
Q ss_pred HHHHHHHHh
Q 026702 166 NLERQVKAL 174 (235)
Q Consensus 166 ~Le~qlk~~ 174 (235)
.++.+|+.|
T Consensus 88 ~~~~~i~~~ 96 (97)
T PF09177_consen 88 AIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666554
No 432
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=65.52 E-value=34 Score=31.33 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 026702 153 LRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
..+|++.|+.-.-.|..||+.+-
T Consensus 233 ~~eei~fLk~tN~qLKaQLegI~ 255 (259)
T KOG4001|consen 233 MKEEIEFLKETNRQLKAQLEGIL 255 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455566666666666666643
No 433
>PF14645 Chibby: Chibby family
Probab=65.50 E-value=20 Score=29.16 Aligned_cols=43 Identities=33% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
...|+++.++|+++|.-|+-+++-|-.-..|..-|...++.|+
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457888888888888888777777666666666665555554
No 434
>PRK01156 chromosome segregation protein; Provisional
Probab=65.48 E-value=66 Score=33.55 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+.+.-..+..|+.++..|+.....|..+++.++.+.+.+..+.
T Consensus 676 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 676 INDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444445555555555545444444444443344333
No 435
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=65.45 E-value=52 Score=27.21 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+..|++-|.+|+.++.+++... ..+|..++. .+..+...|+.+++.|+..|+.+
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~---~~~I~~i~~---~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEA---NDEIARIKE---WYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777887777777643 333433333 24556678888888888888874
No 436
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=65.40 E-value=16 Score=30.94 Aligned_cols=42 Identities=29% Similarity=0.363 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNE------------LRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknE------------Lr~E~~~Lk~e~e~Le~qlk 172 (235)
+...+..+|+.|+.+|+.|.+. |+....+|..|++++++++.
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555542 33344455555555555443
No 437
>PRK01156 chromosome segregation protein; Provisional
Probab=65.18 E-value=42 Score=34.96 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=10.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
..+..++.+++.+...++.+++.|+.
T Consensus 214 ~~l~~~i~~~~~el~~~~~~l~~l~~ 239 (895)
T PRK01156 214 SITLKEIERLSIEYNNAMDDYNNLKS 239 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444443
No 438
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=65.12 E-value=34 Score=39.75 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026702 155 DEKQRLKNEKENLERQVK 172 (235)
Q Consensus 155 ~E~~~Lk~e~e~Le~qlk 172 (235)
..+-.|..+++.|+.+|.
T Consensus 1519 k~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1519 KEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 439
>PRK04863 mukB cell division protein MukB; Provisional
Probab=64.80 E-value=38 Score=38.32 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 026702 86 RRDRLNDRFMELASIL 101 (235)
Q Consensus 86 RRdklNd~F~~Lr~lL 101 (235)
+..+|++.+.+|..-+
T Consensus 308 nL~rI~diL~ELe~rL 323 (1486)
T PRK04863 308 RLVEMARELAELNEAE 323 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 440
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=64.72 E-value=62 Score=24.82 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
-+||.-=-.-|+.+-.++..|+.....|+... ....+|.+....+-+.++.|+.++....
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444445555555555555554444332 1223466666677777777887777754
No 441
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.58 E-value=2.2 Score=43.69 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLG---KINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~---ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
....+.-|.|-++.++.--.++.+|+.++++.+. ++..|+.+..+|++.|..|...+..||.|++..
T Consensus 289 ~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~ 358 (713)
T PF05622_consen 289 EAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKA 358 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555544455555554444332 356677777888888877777777777776653
No 442
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=64.52 E-value=32 Score=32.25 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..|++.++.|+.+..+|..+...|+.....+.|++-.
T Consensus 229 isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 229 ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555556666666656565544
No 443
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=64.51 E-value=47 Score=30.57 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
.++.|..|+.+.++|..+...|++++..-+.||+.|+...
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344444555555555555555555555555555555433
No 444
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.43 E-value=40 Score=37.00 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~ 138 (235)
.+|.+++..+..|.....+|+..+.+
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt 520 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKT 520 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554443
No 445
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=64.22 E-value=63 Score=29.03 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK---NELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek---nELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
..+.+|..+|+.....|+.-|..-..+++.-.++. ++.-++-..++.|.++|..+|..+|.
T Consensus 130 ~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN~ 193 (202)
T TIGR03513 130 AQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLNE 193 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34448888888888888877765554444333332 44555667888888888888887653
No 446
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.19 E-value=46 Score=32.25 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLL---GK-INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~---~e-i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.-+.+|+.+-.++.++...+. ++ ..+|+.+..+|+++...|+++...++.++..
T Consensus 44 ~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 44 SEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555444444443321 22 5567777777888888888888888887776
No 447
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.18 E-value=27 Score=27.51 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=13.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
|+..++.+--.-+..+...+..|++....|+.++.++
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 448
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=64.16 E-value=11 Score=27.53 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=12.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+||.+....|++||+|++..+..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555665555543
No 449
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=64.04 E-value=2.4 Score=33.94 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
+|..+..++-++...|+.++..|+.++.+|+++...|..+.
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ----------------------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444555555555555555555555554444443
No 450
>PRK14148 heat shock protein GrpE; Provisional
Probab=64.03 E-value=25 Score=31.18 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.+++.|++++..|+.+..+|++...++.++.+.+..
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655444
No 451
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.98 E-value=77 Score=28.09 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026702 164 KENLERQV 171 (235)
Q Consensus 164 ~e~Le~ql 171 (235)
+..|+++|
T Consensus 178 i~~L~~~l 185 (237)
T PF00261_consen 178 IRDLEEKL 185 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 452
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=63.98 E-value=78 Score=28.84 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------HHHHHHHHHHHHHHHHHHHHhcC
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNEL-------RDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL-------r~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+-|.+|++++++.+.+...+..|++.-+.++.+| .++.-.++.++.+|+.-+.++.+
T Consensus 46 ~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~lga 109 (231)
T COG5493 46 QDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITGLGA 109 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666654444443333333333 35677888999999987776543
No 453
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=63.94 E-value=36 Score=32.72 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCCCCCCC
Q 026702 164 KENLERQVKALSSQPAFLPH 183 (235)
Q Consensus 164 ~e~Le~qlk~~~~~p~~~ph 183 (235)
+.+|+++...|+..-+.+-|
T Consensus 344 vsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 344 VSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHhhhhheehhhH
Confidence 33455566667766664443
No 454
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.92 E-value=35 Score=32.32 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 111 KTVLLADAVQMVTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 111 KasIL~dAI~yIk~Lr~~vq~Lk~~n~~ 138 (235)
|-++=+.|..-|.+|+.++++|++++..
T Consensus 9 KeGL~~~aLqKIqelE~QldkLkKE~qQ 36 (307)
T PF10481_consen 9 KEGLPTRALQKIQELEQQLDKLKKERQQ 36 (307)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567888899999998888886643
No 455
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=63.89 E-value=49 Score=27.22 Aligned_cols=15 Identities=7% Similarity=0.095 Sum_probs=7.3
Q ss_pred CCchhHHHHHHHHHH
Q 026702 76 SGSKACREKMRRDRL 90 (235)
Q Consensus 76 ~~~h~~~ERrRRdkl 90 (235)
...|.+-=|.|+--+
T Consensus 40 q~~h~~e~~l~~~~~ 54 (134)
T PF07047_consen 40 QSYHRFEVRLKMRIL 54 (134)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555333
No 456
>PRK14153 heat shock protein GrpE; Provisional
Probab=63.74 E-value=18 Score=32.01 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=3.3
Q ss_pred CCccCCC
Q 026702 226 QDHVLRP 232 (235)
Q Consensus 226 ~d~~l~p 232 (235)
.|-+|||
T Consensus 174 ~dRVLRP 180 (194)
T PRK14153 174 NSKVIRP 180 (194)
T ss_pred CCEEeeC
Confidence 3444554
No 457
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=63.64 E-value=57 Score=28.99 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 026702 81 CREKMRRDRLNDR 93 (235)
Q Consensus 81 ~~ERrRRdklNd~ 93 (235)
..|-+||...+..
T Consensus 51 ~~E~k~R~E~~~~ 63 (247)
T PF06705_consen 51 EAEVKRRVESNKK 63 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777444433
No 458
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=63.63 E-value=24 Score=31.58 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=29.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEA----QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 120 ~yIk~Lr~~v----q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
.|=+.|=++- ..--++|++|..+|..+..|++.|++|+..|+.-.+-
T Consensus 107 ~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~ 157 (200)
T PF07412_consen 107 NYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEH 157 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664432 2233467777777777777777777777766655443
No 459
>PRK15396 murein lipoprotein; Provisional
Probab=63.52 E-value=48 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 128 EAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
++++|..+...|..++..++...+.+|...+.-+.|-+|-.+.|.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666555444443
No 460
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=63.46 E-value=61 Score=25.09 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
|+..|..|-+.|
T Consensus 13 L~~aid~LE~~v 24 (89)
T PF13747_consen 13 LEAAIDRLEKAV 24 (89)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 461
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.43 E-value=63 Score=32.61 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
--.|+.+|...+..+......|...
T Consensus 291 geayLaKL~~~l~~~~~~~~~ltqq 315 (521)
T KOG1937|consen 291 GEAYLAKLMGKLAELNKQMEELTQQ 315 (521)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777776666655555444
No 462
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=63.28 E-value=63 Score=24.38 Aligned_cols=54 Identities=30% Similarity=0.322 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGK--------INELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~e--------i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
=..|.+|+++.=.|+-.+--|.+. ++++-.+.-+|+.++..|+.|+..++..|.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777665555544443333 233333333444444444444444444443
No 463
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=63.13 E-value=22 Score=36.95 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~e 142 (235)
|-.+|.+|-.+++-|+.|
T Consensus 327 LIakVDeL~~E~~vLrgE 344 (832)
T KOG2077|consen 327 LIAKVDELTCEKDVLRGE 344 (832)
T ss_pred HHHHHHhhccHHHHHhhH
Confidence 333344443333333333
No 464
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.98 E-value=52 Score=30.06 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk 172 (235)
.+.++..+.+|++.|+.+++
T Consensus 175 ~~~dr~~~~~ev~~~e~kve 194 (243)
T cd07666 175 KKADRDLLKEEIEKLEDKVE 194 (243)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 34444455555555554443
No 465
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=62.94 E-value=59 Score=24.45 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhc
Q 026702 89 RLNDRFMELASIL 101 (235)
Q Consensus 89 klNd~F~~Lr~lL 101 (235)
+||..+..|..++
T Consensus 7 ~in~~v~~l~k~~ 19 (102)
T PF14523_consen 7 KINQNVSQLEKLV 19 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666665
No 466
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.93 E-value=37 Score=32.32 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 026702 152 ELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~ql 171 (235)
.|-...+.|+.|++.|-..+
T Consensus 81 ~LlKkl~~l~keKe~L~~~~ 100 (310)
T PF09755_consen 81 TLLKKLQQLKKEKETLALKY 100 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444566777777765444
No 467
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.83 E-value=1.1e+02 Score=26.91 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+=..|+.-....+.++..|+.+...+...+..|+..+.+|+.....++..+.-|-...+.
T Consensus 86 LAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 86 LARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666677777777777777777777777777666666666666555544
No 468
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=62.63 E-value=59 Score=36.55 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 85 MRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 85 rRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
.+=++|.+++.+.+++| . .+..++..|- .-..-+..|+.+++.+...+..+++.+.+...
T Consensus 1201 s~f~~me~kl~~ir~il-~--~~svs~~~i~-~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~ 1260 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAIL-S--APSVSAEDIA-QLASATESLRRQLQALTEDLPQEEETLSDITN 1260 (1758)
T ss_pred hHHHHHHHHHHHHHHHh-c--CCCccHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 34567888899999999 3 2344554442 22233344556665555555544444443333
No 469
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.54 E-value=86 Score=32.16 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
-+.|.+|..||+|....+.+..+.-|.+|+.+
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36688888888888888888888888888885
No 470
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=62.50 E-value=55 Score=27.16 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026702 159 RLKNEKENLERQVKALSS 176 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~~~~ 176 (235)
.|...+.+....|+.+..
T Consensus 95 Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 95 DLEEKRKKYKERLKELGE 112 (136)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 333344444445555443
No 471
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.48 E-value=56 Score=23.53 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGK--------------INELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~e--------------i~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
+..|++++++++.+...++.. +..-+....++..+...|...++.|
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555444332 3334444456666666666666554
No 472
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.45 E-value=39 Score=33.03 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhH----
Q 026702 80 ACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQ-LRDEAQKLKVSNEKLLGKINELKCEKNELR---- 154 (235)
Q Consensus 80 ~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~-Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr---- 154 (235)
.......+..+...+.+|+.+- .....|.+.++-++. ++.+++-+.+.+..-+...+.|..+.|++.
T Consensus 204 ~~~~~~~~~~l~~~~~el~eik--------~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq 275 (395)
T PF10267_consen 204 SSVSSQQNLGLQKILEELREIK--------ESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQ 275 (395)
T ss_pred ccccccccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777776665 334556666666553 444443333333222223455666666643
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 155 DEKQRLKNEKENLER 169 (235)
Q Consensus 155 ~E~~~Lk~e~e~Le~ 169 (235)
.|...||+++..+|.
T Consensus 276 ~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 276 NEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHhHHH
Confidence 455566666644443
No 473
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.39 E-value=51 Score=34.67 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.-|.+|+.++..++.++...+.|+..|....++|++++..|..|+.+|..+|+.
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555566666666666666655555555555554443
No 474
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=62.37 E-value=40 Score=35.71 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 026702 160 LKNEKENLERQVKA 173 (235)
Q Consensus 160 Lk~e~e~Le~qlk~ 173 (235)
++..+|.|++|++.
T Consensus 647 ~k~KIe~L~~eIkk 660 (762)
T PLN03229 647 LQEKIESLNEEINK 660 (762)
T ss_pred hHHHHHHHHHHHHH
Confidence 46667777777665
No 475
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.19 E-value=48 Score=32.72 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=19.2
Q ss_pred cccCCcc--cccCCCCCCcccccCCCcccCCCCCc
Q 026702 196 QVVGGKL--VPLVGYPGVSMWQFMPPAAVDTSQDH 228 (235)
Q Consensus 196 qa~~~k~--~p~~~ypg~~mwq~~pp~~~dts~d~ 228 (235)
-.+|..+ |.+.|-||-+.-++ ||+--..--|+
T Consensus 329 rthgsniAKMs~~g~PG~a~Pa~-~~ak~nghcdp 362 (561)
T KOG1103|consen 329 RTHGSNIAKMSIDGKPGNALPAL-PPAKGNGHCDP 362 (561)
T ss_pred hccccchhhhcccCCCCCCCCCC-CcccCCCCCCH
Confidence 4455433 66778899887776 66544333443
No 476
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=61.96 E-value=41 Score=33.68 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-+|+-.|-..+++.....+++...++.|.....|++++.+.|.-+++.|-++-+.
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~ 485 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRE 485 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455555555555555556666666777777777777777777777777665444
No 477
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=61.96 E-value=84 Score=29.41 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=32.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 109 MDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK----INELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 109 ~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e----i~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
..|.++|+. ++...+..++++-...+++..+ +..|....++|+..+..|....+++..-+
T Consensus 69 ~~~~~~l~k---lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~ 132 (333)
T PF05816_consen 69 EKKKGFLGK---LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYY 132 (333)
T ss_pred hhhhhHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776 4444444444444444444433 34455556666666666666555554433
No 478
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.95 E-value=60 Score=33.46 Aligned_cols=71 Identities=13% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 90 LNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 90 lNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
||+-|..|..+. -.-..-..+..+|..|=..+.+++.--..|.........+|+..-.++|.|-++...|-
T Consensus 110 L~~Ff~alq~la-~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN 180 (651)
T PRK06945 110 ITSFFTGLQNVA-NNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLN 180 (651)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665 21123455777888886666666555555554444444444333344444444333333
No 479
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=61.95 E-value=91 Score=30.19 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHhHHHHHHHH
Q 026702 88 DRLNDRFMELASILD-PGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC-----EKNELRDEKQRLK 161 (235)
Q Consensus 88 dklNd~F~~Lr~lLp-P~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~-----EknELr~E~~~Lk 161 (235)
+.+.++|.+|...+- |.--...+|+.-+..-+..++.+-....++++..+.+.+-.+-++. -+.++.+|...|.
T Consensus 26 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~~l~ 105 (364)
T TIGR00020 26 EKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKALE 105 (364)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 455666777776661 1111123444444444444444444444444333332211111111 1234556666777
Q ss_pred HHHHHHH
Q 026702 162 NEKENLE 168 (235)
Q Consensus 162 ~e~e~Le 168 (235)
.++++|+
T Consensus 106 ~~l~~le 112 (364)
T TIGR00020 106 KKLAELE 112 (364)
T ss_pred HHHHHHH
Confidence 7777776
No 480
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=61.87 E-value=85 Score=26.59 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
+.+-|..|++|+..-.+..+++..-+.-...|..|.+.|..|+..|
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhL 53 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHL 53 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455666666666444444444333333444555555554444433
No 481
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=61.73 E-value=45 Score=26.12 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
-+.+|..+|+.|....+++..+++.++.....-.+|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA 61 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEA 61 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888877777777777777665555553
No 482
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=61.70 E-value=1.2e+02 Score=30.61 Aligned_cols=82 Identities=15% Similarity=0.386 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
..|..+|..+...+. ++...-+...+-++++..++..++++...+.+.+..|+.+-.+-|+....++.++..+
T Consensus 354 ~~l~~~~~~~~~~i~-------~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 354 KELEKRYEDLEERIE-------EQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHH-------cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555551 3334455555666777777777777777777777777777777777777787777777
Q ss_pred HHHHHHhcC
Q 026702 168 ERQVKALSS 176 (235)
Q Consensus 168 e~qlk~~~~ 176 (235)
+..++..+-
T Consensus 427 kR~lek~nL 435 (560)
T PF06160_consen 427 KRRLEKSNL 435 (560)
T ss_pred HHHHHHcCC
Confidence 777777544
No 483
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.63 E-value=49 Score=34.06 Aligned_cols=57 Identities=26% Similarity=0.466 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--h--------------------------HHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE--L--------------------------RDEKQRLKNEKENLERQ 170 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE--L--------------------------r~E~~~Lk~e~e~Le~q 170 (235)
-+.+..|+.++..|+.++..|+.++..|+.++.. | +.+...|++|+++|..+
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888888888777777765543 1 13356888888888888
Q ss_pred HHHhc
Q 026702 171 VKALS 175 (235)
Q Consensus 171 lk~~~ 175 (235)
|+.+.
T Consensus 582 l~~le 586 (722)
T PF05557_consen 582 LRSLE 586 (722)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 87764
No 484
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.58 E-value=34 Score=37.25 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 138 KLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.+..|+.+|++.+..|..+...+...+..|+.|+
T Consensus 407 ~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 407 KKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333343
No 485
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.46 E-value=61 Score=31.86 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
+.+-.+++..+.++..++......|..++++++.++++|+.+...|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555555555555555555555555555555544443
No 486
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=61.38 E-value=34 Score=30.66 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
|.+|+.-...|+.++. .++++|..|+.|..+|.+
T Consensus 120 L~eaL~ENe~Lh~~ie-------~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 120 LEEALEENEKLHKEIE-------QKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 444445555555444443
No 487
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=61.36 E-value=1.5e+02 Score=28.25 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHhHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGK----INELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~e----i~~Lk~EknELr~E~~~Lk~ 162 (235)
......+|+.|+.+|.+|++....-+.+ +.....+-.++++||.+|+.
T Consensus 224 ~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr 275 (310)
T PF09755_consen 224 AERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQR 275 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999877665543 23334444668888775544
No 488
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=61.33 E-value=91 Score=27.55 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=12.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 146 LKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|...-.++-..+-.+...+..|+++++.
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444445555554443
No 489
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=61.29 E-value=55 Score=27.41 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 117 DAVQMVTQLRDEAQKL-----KVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~L-----k~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
+.+.-|+.||..+.+| ++-.++|..-+.+-+.+..+.+.+...-..-++.+.+++......+
T Consensus 6 k~l~niR~lra~~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~ 72 (135)
T PRK10947 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 72 (135)
T ss_pred HHHHhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5566777777776544 3333444443444444444444444444444555555666655555
No 490
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=61.23 E-value=1.4e+02 Score=27.55 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 026702 84 KMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK------------- 150 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek------------- 150 (235)
+.+...+++.+.....++ ...-.++...+ ++-.-+.+++.++..++.+...++.++..++.+.
T Consensus 171 ~~~l~~~~~~~~~~~~L~---~~g~is~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 246 (423)
T TIGR01843 171 RQQLEVISEELEARRKLK---EKGLVSRLELL-ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLE 246 (423)
T ss_pred HHHHHHHHHHHHHHHHHH---HcCCCCHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --hHhHHHHHHHHHHHHHHHHHHH
Q 026702 151 --NELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 151 --nELr~E~~~Lk~e~e~Le~qlk 172 (235)
.+++.+...++.+++.++.+++
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.11 E-value=68 Score=32.18 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH-----------HHHHHHHHHHHHHHHHHhc
Q 026702 111 KTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE-----------KQRLKNEKENLERQVKALS 175 (235)
Q Consensus 111 KasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E-----------~~~Lk~e~e~Le~qlk~~~ 175 (235)
+...+...+.++.+++.+.+.+..+...++.+...+..+..+|+.+ +..|..-.++|..|++.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 44 ELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=60.98 E-value=39 Score=29.91 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINE-----LKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~-----Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
++....++.-|+.+...|+.++.. +..+.+.|.-|...++.+.|-.+-+|
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=60.94 E-value=69 Score=32.76 Aligned_cols=79 Identities=8% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
..||+-|..|..+- -.-..-.-+..+|..|-....+++..-..|.+....+..+|...-.++|.|-++...|-.+|...
T Consensus 107 ~~l~~ff~alq~la-~~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~ 185 (624)
T PRK12714 107 GLWSNFFDSTSALS-SNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSS 185 (624)
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=60.90 E-value=1.2e+02 Score=31.12 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 79 KACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 79 h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
+...|-|+|.+||.-..+-...=-...++|.+|.++...=-..|+.|++++...++++...-+.. +.+-+|+
T Consensus 255 kmrleekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~erqqlvetH~~R--V~AmlNd------ 326 (615)
T KOG3540|consen 255 KMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQLVETHEAR--VEAMLND------ 326 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh------
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 026702 159 RLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~~~~~p 178 (235)
....-|+.-|.++.+.|
T Consensus 327 ---rrR~Ale~ylaALqa~p 343 (615)
T KOG3540|consen 327 ---RRRDALENYLAALQADP 343 (615)
T ss_pred ---HHHHHHHHHHHHHhcCC
No 495
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=60.86 E-value=49 Score=25.06 Aligned_cols=49 Identities=24% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|...+..|..+.+.|....+....+...++++......-+..++.+|+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~ 49 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNT 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=60.80 E-value=48 Score=30.48 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+..+.+.++.....++.++..+..+++.++.+...++.+++.++.+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~ 177 (423)
T TIGR01843 126 ELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVI 177 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=60.59 E-value=74 Score=24.35 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE----KQRLKNEK 164 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E----~~~Lk~e~ 164 (235)
|+|+.+..|+.=. .....-+..++.+-..++.....=..|+..++..+.+|... ++....||
T Consensus 1 Rl~elLd~ir~Ef--------------~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI 66 (79)
T PF08581_consen 1 RLNELLDAIRQEF--------------ENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEI 66 (79)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCC
Q 026702 165 ENLERQVKALSSQ 177 (235)
Q Consensus 165 e~Le~qlk~~~~~ 177 (235)
.+|..+|.....+
T Consensus 67 ~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 67 ARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHCHHTT-
T ss_pred HHHHHHHHhhCCC
No 498
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=60.58 E-value=99 Score=29.94 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-hhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELA-SILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 88 dklNd~F~~Lr-~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
+.+..+|.+|. .+-.|.--....++.-|..-...++.+-....+++.....+.+-.+-++.+.+. +-...++.|+..
T Consensus 26 ~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~--el~~~a~~e~~~ 103 (367)
T PRK00578 26 DALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE--ETLAEAEAELKA 103 (367)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 026702 167 LERQVKAL 174 (235)
Q Consensus 167 Le~qlk~~ 174 (235)
|+.+++.+
T Consensus 104 l~~~l~~l 111 (367)
T PRK00578 104 LEKKLAAL 111 (367)
T ss_pred HHHHHHHH
No 499
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.57 E-value=26 Score=26.31 Aligned_cols=46 Identities=30% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
+.|+..++..=-+.+..+..++.+|+.....+..++++++....++
T Consensus 57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 57 KQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.56 E-value=49 Score=26.75 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 94 FMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 94 F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
|...+.++ -+.||..+..+--.-+..+..++..|+...+.|+..+.++..+..++
T Consensus 57 Yk~VG~vl-----v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 57 YKIVGNLL-----VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHhhHHH-----hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!