Query 026702
Match_columns 235
No_of_seqs 198 out of 604
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.8 9.3E-19 3.2E-23 131.8 8.5 72 75-147 6-77 (82)
2 1nkp_B MAX protein, MYC proto- 99.8 1.8E-18 6.3E-23 129.6 7.9 77 75-151 2-78 (83)
3 1nkp_A C-MYC, MYC proto-oncoge 99.7 1E-17 3.4E-22 128.0 8.6 78 75-153 6-85 (88)
4 1nlw_A MAD protein, MAX dimeri 99.7 4.4E-17 1.5E-21 122.7 9.5 77 76-152 2-79 (80)
5 4ati_A MITF, microphthalmia-as 99.7 3.8E-17 1.3E-21 130.8 6.9 88 75-173 27-116 (118)
6 1hlo_A Protein (transcription 99.7 1.5E-16 5.2E-21 118.7 6.8 68 75-142 12-79 (80)
7 4h10_B Circadian locomoter out 99.6 5.2E-16 1.8E-20 115.0 5.3 58 75-133 8-65 (71)
8 1an4_A Protein (upstream stimu 99.6 9.5E-16 3.3E-20 110.0 3.4 56 75-130 5-64 (65)
9 1a0a_A BHLH, protein (phosphat 99.5 2.6E-15 9E-20 108.3 3.0 55 75-129 2-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.5 1E-14 3.6E-19 108.3 1.5 54 75-128 9-64 (73)
11 3u5v_A Protein MAX, transcript 99.4 3.9E-14 1.3E-18 105.8 3.9 60 74-133 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 2.2E-12 7.4E-17 94.6 2.6 56 74-129 11-66 (68)
13 4ath_A MITF, microphthalmia-as 99.2 3.2E-10 1.1E-14 86.3 11.1 76 87-173 4-81 (83)
14 4f3l_A Mclock, circadian locom 99.1 3.7E-11 1.3E-15 108.5 6.0 53 75-128 12-64 (361)
15 2ql2_B Neurod1, neurogenic dif 99.1 4.3E-11 1.5E-15 85.6 4.9 56 75-130 2-58 (60)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.9E-10 2.4E-14 101.6 3.6 54 75-128 13-68 (387)
17 2lfh_A DNA-binding protein inh 98.7 3.9E-09 1.3E-13 77.7 2.3 49 79-127 18-67 (68)
18 4aya_A DNA-binding protein inh 97.9 1.7E-05 5.9E-10 61.8 6.1 51 81-131 31-82 (97)
19 2jee_A YIIU; FTSZ, septum, coi 97.7 0.0003 1E-08 53.3 9.7 60 115-174 15-74 (81)
20 2jee_A YIIU; FTSZ, septum, coi 96.9 0.0054 1.8E-07 46.4 8.9 56 119-174 5-67 (81)
21 2wt7_A Proto-oncogene protein 96.6 0.012 4E-07 41.8 8.2 58 83-155 1-58 (63)
22 1gd2_E Transcription factor PA 96.4 0.0044 1.5E-07 45.4 5.2 42 119-160 28-69 (70)
23 3hnw_A Uncharacterized protein 96.4 0.031 1.1E-06 45.5 10.4 83 88-173 35-135 (138)
24 3hnw_A Uncharacterized protein 96.1 0.023 7.7E-07 46.3 8.4 45 121-165 90-134 (138)
25 3s9g_A Protein hexim1; cyclin 96.1 0.026 9E-07 44.2 8.3 58 108-169 29-93 (104)
26 2yy0_A C-MYC-binding protein; 95.8 0.013 4.4E-07 40.7 4.8 39 117-155 2-47 (53)
27 1t2k_D Cyclic-AMP-dependent tr 95.3 0.038 1.3E-06 38.7 5.8 34 120-153 22-55 (61)
28 1go4_E MAD1 (mitotic arrest de 95.3 0.066 2.2E-06 41.8 7.6 55 121-175 13-95 (100)
29 3a7p_A Autophagy protein 16; c 95.3 0.13 4.3E-06 42.9 9.7 85 87-173 37-121 (152)
30 2oqq_A Transcription factor HY 95.0 0.059 2E-06 36.0 5.7 36 120-155 3-38 (42)
31 1jnm_A Proto-oncogene C-JUN; B 94.9 0.042 1.4E-06 38.6 5.0 35 120-154 22-56 (62)
32 3nmd_A CGMP dependent protein 94.5 0.11 3.8E-06 38.4 6.6 48 121-168 20-67 (72)
33 3s4r_A Vimentin; alpha-helix, 94.4 0.38 1.3E-05 36.5 9.7 54 120-173 23-88 (93)
34 1t2k_D Cyclic-AMP-dependent tr 94.0 0.16 5.3E-06 35.5 6.2 37 135-171 23-59 (61)
35 3oja_B Anopheles plasmodium-re 93.9 0.26 8.9E-06 46.2 9.6 39 141-179 544-586 (597)
36 1hjb_A Ccaat/enhancer binding 93.7 0.47 1.6E-05 35.9 8.9 53 121-173 16-68 (87)
37 1dh3_A Transcription factor CR 93.6 0.072 2.5E-06 37.0 3.9 31 120-150 22-52 (55)
38 3he5_B Synzip2; heterodimeric 93.6 0.2 7E-06 34.0 6.0 43 124-166 7-49 (52)
39 1gu4_A CAAT/enhancer binding p 93.4 0.6 2.1E-05 34.6 8.9 55 120-174 15-69 (78)
40 3cve_A Homer protein homolog 1 93.2 0.4 1.4E-05 35.3 7.5 51 123-173 3-53 (72)
41 2wt7_A Proto-oncogene protein 92.7 0.36 1.2E-05 34.0 6.5 37 136-172 25-61 (63)
42 3q8t_A Beclin-1; autophagy, AT 92.7 0.54 1.8E-05 35.9 8.0 48 122-169 6-53 (96)
43 2dgc_A Protein (GCN4); basic d 92.5 0.17 5.9E-06 35.9 4.6 29 143-171 32-60 (63)
44 2v66_B Nuclear distribution pr 92.5 0.68 2.3E-05 36.6 8.5 22 122-143 5-26 (111)
45 1ci6_A Transcription factor AT 92.5 0.75 2.6E-05 32.4 8.0 42 119-160 15-56 (63)
46 2v4h_A NF-kappa-B essential mo 92.5 1.6 5.4E-05 34.6 10.5 15 159-173 87-101 (110)
47 3oja_B Anopheles plasmodium-re 92.1 2.7 9.1E-05 39.3 13.6 45 129-173 539-583 (597)
48 1jnm_A Proto-oncogene C-JUN; B 92.1 0.15 5.2E-06 35.7 3.9 36 136-171 24-59 (62)
49 3i00_A HIP-I, huntingtin-inter 91.9 1.8 6.2E-05 34.4 10.4 67 108-174 10-80 (120)
50 3qh9_A Liprin-beta-2; coiled-c 91.7 1.2 4.2E-05 33.5 8.7 55 118-172 24-78 (81)
51 3htk_A Structural maintenance 91.6 1.7 5.7E-05 29.6 8.8 53 121-173 6-58 (60)
52 3m9b_A Proteasome-associated A 91.6 0.24 8E-06 44.3 5.5 19 161-179 81-99 (251)
53 4etp_A Kinesin-like protein KA 91.5 0.51 1.7E-05 44.0 7.8 54 122-175 5-58 (403)
54 3m9b_A Proteasome-associated A 91.4 0.21 7.1E-06 44.6 4.9 41 129-169 56-96 (251)
55 1gd2_E Transcription factor PA 91.4 0.4 1.4E-05 35.0 5.6 38 136-173 31-68 (70)
56 3cvf_A Homer-3, homer protein 91.4 0.66 2.3E-05 34.7 6.9 49 125-173 11-59 (79)
57 2v71_A Nuclear distribution pr 91.4 1.3 4.6E-05 37.8 9.7 52 120-171 56-111 (189)
58 1ik9_A DNA repair protein XRCC 90.9 1.2 4.2E-05 38.4 9.2 38 115-152 127-164 (213)
59 3m91_A Proteasome-associated A 90.7 0.78 2.7E-05 31.6 6.3 41 120-167 9-49 (51)
60 2fxo_A Myosin heavy chain, car 90.7 2.1 7.2E-05 33.7 9.7 62 113-174 62-123 (129)
61 3he5_A Synzip1; heterodimeric 90.6 1.1 3.8E-05 30.1 6.7 23 120-142 3-25 (49)
62 1go4_E MAD1 (mitotic arrest de 90.6 0.57 1.9E-05 36.5 6.1 42 141-182 12-53 (100)
63 2dfs_A Myosin-5A; myosin-V, in 90.5 0.69 2.4E-05 48.2 8.5 17 152-168 1027-1043(1080)
64 3i00_A HIP-I, huntingtin-inter 90.4 1.1 3.8E-05 35.6 7.8 51 112-169 32-82 (120)
65 2dfs_A Myosin-5A; myosin-V, in 90.4 1 3.5E-05 47.0 9.6 23 153-175 1021-1043(1080)
66 3s4r_A Vimentin; alpha-helix, 90.2 1.3 4.3E-05 33.6 7.7 32 137-168 59-90 (93)
67 3o0z_A RHO-associated protein 90.1 2 6.9E-05 36.2 9.6 75 87-168 64-138 (168)
68 3mq7_A Bone marrow stromal ant 90.1 0.75 2.6E-05 36.9 6.5 34 136-169 73-106 (121)
69 2eqb_B RAB guanine nucleotide 90.0 1.5 5E-05 34.0 7.9 52 117-168 9-60 (97)
70 1deb_A APC protein, adenomatou 90.0 1.6 5.6E-05 30.3 7.3 45 123-167 6-50 (54)
71 3ghg_A Fibrinogen alpha chain; 89.8 1.3 4.3E-05 43.4 9.1 75 87-165 80-155 (562)
72 1hjb_A Ccaat/enhancer binding 89.7 0.59 2E-05 35.4 5.4 29 124-152 40-68 (87)
73 3m91_A Proteasome-associated A 89.7 1.4 4.7E-05 30.4 6.8 37 138-174 13-49 (51)
74 2yy0_A C-MYC-binding protein; 89.5 0.51 1.8E-05 32.6 4.5 31 142-172 20-50 (53)
75 3mq7_A Bone marrow stromal ant 89.4 1.8 6E-05 34.8 8.1 32 142-173 72-103 (121)
76 2eqb_B RAB guanine nucleotide 89.1 3.4 0.00012 32.0 9.3 16 157-172 78-93 (97)
77 3v86_A De novo design helix; c 89.0 0.37 1.3E-05 28.9 3.0 26 121-146 1-26 (27)
78 2ocy_A RAB guanine nucleotide 89.0 1.8 6.1E-05 36.0 8.3 23 115-137 8-30 (154)
79 1nkp_B MAX protein, MYC proto- 88.6 0.66 2.3E-05 33.8 4.9 33 143-175 49-81 (83)
80 2dgc_A Protein (GCN4); basic d 88.5 1.9 6.4E-05 30.5 7.0 33 119-151 29-61 (63)
81 3u06_A Protein claret segregat 88.4 1.7 5.9E-05 40.6 8.8 53 123-175 6-58 (412)
82 1gu4_A CAAT/enhancer binding p 88.4 0.73 2.5E-05 34.2 5.0 33 122-154 38-70 (78)
83 2w6a_A ARF GTPase-activating p 88.3 1.2 4E-05 32.0 5.7 37 126-162 26-62 (63)
84 3swf_A CGMP-gated cation chann 88.1 1.7 5.9E-05 32.2 6.8 49 123-174 3-51 (74)
85 3ol1_A Vimentin; structural ge 88.1 3.2 0.00011 32.5 8.9 29 143-171 71-99 (119)
86 1m1j_C Fibrinogen gamma chain; 88.0 3.4 0.00012 38.9 10.6 77 90-169 57-133 (409)
87 1ic2_A Tropomyosin alpha chain 88.0 5.7 0.00019 28.9 9.7 57 117-173 17-73 (81)
88 3na7_A HP0958; flagellar bioge 87.8 2.3 7.9E-05 36.7 8.6 53 121-173 33-85 (256)
89 3htk_A Structural maintenance 87.7 3.1 0.00011 28.2 7.6 50 118-167 10-59 (60)
90 3u1c_A Tropomyosin alpha-1 cha 87.7 5.2 0.00018 30.4 9.7 46 117-162 20-65 (101)
91 3u59_A Tropomyosin beta chain; 87.7 5 0.00017 30.3 9.5 52 116-167 19-70 (101)
92 3a7p_A Autophagy protein 16; c 87.6 3.6 0.00012 34.2 9.2 79 89-169 43-131 (152)
93 2wt7_B Transcription factor MA 87.5 1.5 5.1E-05 33.5 6.4 38 137-174 51-88 (90)
94 3swy_A Cyclic nucleotide-gated 87.3 2.4 8.2E-05 28.6 6.6 45 124-171 2-46 (46)
95 2wt7_B Transcription factor MA 86.9 1.2 4.2E-05 34.0 5.5 37 130-166 51-87 (90)
96 3iv1_A Tumor susceptibility ge 86.8 5.5 0.00019 29.6 9.0 45 124-168 29-73 (78)
97 4h22_A Leucine-rich repeat fli 86.6 3.6 0.00012 32.1 8.2 52 122-173 32-83 (103)
98 3swk_A Vimentin; cytoskeleton, 86.3 3.4 0.00012 30.7 7.7 36 139-174 47-82 (86)
99 3o0z_A RHO-associated protein 86.0 14 0.00049 31.0 12.4 80 81-174 79-159 (168)
100 4b4t_K 26S protease regulatory 85.7 1.3 4.4E-05 41.6 6.3 43 137-179 52-94 (428)
101 3nmd_A CGMP dependent protein 85.7 2.2 7.6E-05 31.4 6.2 42 130-171 22-63 (72)
102 2xdj_A Uncharacterized protein 85.7 5.4 0.00019 29.7 8.5 31 139-169 25-55 (83)
103 2fxo_A Myosin heavy chain, car 85.4 7.4 0.00025 30.6 9.7 48 126-173 68-115 (129)
104 1kd8_A GABH AIV, GCN4 acid bas 85.3 1.4 4.8E-05 28.5 4.3 26 123-148 4-29 (36)
105 1dh3_A Transcription factor CR 85.2 3 0.0001 28.7 6.4 31 141-171 22-52 (55)
106 3efg_A Protein SLYX homolog; x 85.1 2.6 9E-05 31.0 6.5 51 125-175 12-62 (78)
107 3m48_A General control protein 85.0 1.1 3.6E-05 28.6 3.6 21 124-144 4-24 (33)
108 1kd8_B GABH BLL, GCN4 acid bas 84.7 2.2 7.7E-05 27.5 5.1 26 122-147 3-28 (36)
109 2v66_B Nuclear distribution pr 84.7 8.1 0.00028 30.4 9.5 42 116-157 31-72 (111)
110 2v4h_A NF-kappa-B essential mo 84.6 4.6 0.00016 31.9 8.0 23 151-173 86-108 (110)
111 3oja_A Leucine-rich immune mol 84.5 4.9 0.00017 36.9 9.5 31 142-172 436-466 (487)
112 3oja_A Leucine-rich immune mol 84.0 22 0.00075 32.5 13.7 52 122-173 423-474 (487)
113 3vmx_A Voltage-gated hydrogen 83.7 3.3 0.00011 28.3 5.9 41 127-174 4-44 (48)
114 1lwu_C Fibrinogen gamma chain; 83.4 2.7 9.3E-05 38.4 7.2 54 119-172 4-57 (323)
115 1wt6_A Myotonin-protein kinase 83.2 10 0.00035 28.4 9.0 27 147-173 44-70 (81)
116 1ik9_A DNA repair protein XRCC 83.1 5.1 0.00017 34.5 8.4 51 120-170 125-175 (213)
117 3na7_A HP0958; flagellar bioge 83.0 6.1 0.00021 34.0 9.0 16 126-141 59-74 (256)
118 3iv1_A Tumor susceptibility ge 83.0 10 0.00034 28.2 8.9 49 126-174 24-72 (78)
119 3efg_A Protein SLYX homolog; x 82.9 4 0.00014 30.0 6.6 48 121-168 15-62 (78)
120 2oxj_A Hybrid alpha/beta pepti 82.8 1.9 6.6E-05 27.5 4.2 21 123-143 4-24 (34)
121 2w83_C C-JUN-amino-terminal ki 82.7 9.5 0.00033 28.4 8.6 35 139-173 35-69 (77)
122 2j5u_A MREC protein; bacterial 82.7 0.45 1.5E-05 41.7 1.7 15 159-173 47-61 (255)
123 3q8t_A Beclin-1; autophagy, AT 82.5 5.8 0.0002 30.0 7.7 11 138-148 36-46 (96)
124 2oxj_A Hybrid alpha/beta pepti 82.3 2.5 8.6E-05 27.0 4.6 25 137-161 4-28 (34)
125 1nkp_A C-MYC, MYC proto-oncoge 82.0 2.8 9.7E-05 31.2 5.6 29 139-167 57-85 (88)
126 3tnu_B Keratin, type II cytosk 81.9 13 0.00044 29.1 9.7 23 120-142 43-65 (129)
127 1fxk_C Protein (prefoldin); ar 81.9 5.3 0.00018 30.9 7.4 43 115-160 86-128 (133)
128 3trt_A Vimentin; cytoskeleton, 81.8 5.4 0.00019 28.3 6.9 25 143-167 51-75 (77)
129 3ni0_A Bone marrow stromal ant 81.4 15 0.0005 28.5 9.5 60 115-174 27-86 (99)
130 2zvf_A Alanyl-tRNA synthetase; 81.4 2.2 7.5E-05 34.1 5.2 22 121-142 33-54 (171)
131 1jcd_A Major outer membrane li 81.3 6.1 0.00021 27.2 6.7 31 122-152 6-36 (52)
132 3bas_A Myosin heavy chain, str 81.3 14 0.00049 27.3 9.6 37 138-174 46-82 (89)
133 2w83_C C-JUN-amino-terminal ki 81.1 8.5 0.00029 28.6 7.8 46 125-170 14-59 (77)
134 3tnu_B Keratin, type II cytosk 81.1 8.5 0.00029 30.1 8.4 28 122-149 38-65 (129)
135 1uix_A RHO-associated kinase; 81.0 9.4 0.00032 27.9 7.9 46 126-171 3-48 (71)
136 3ibp_A Chromosome partition pr 80.7 11 0.00039 34.3 10.1 76 82-169 21-104 (302)
137 3tnu_A Keratin, type I cytoske 80.5 1.6 5.5E-05 34.4 4.1 55 91-146 16-71 (131)
138 1nlw_A MAD protein, MAX dimeri 80.2 4.5 0.00015 29.6 6.1 17 155-171 61-77 (80)
139 1wle_A Seryl-tRNA synthetase; 80.1 7.9 0.00027 37.2 9.4 52 122-173 79-148 (501)
140 3s9g_A Protein hexim1; cyclin 80.0 8.8 0.0003 30.0 7.9 52 125-176 35-93 (104)
141 2oto_A M protein; helical coil 80.0 8.1 0.00028 31.0 8.2 25 125-149 55-79 (155)
142 2zxx_A Geminin; coiled-coil, c 79.9 7.7 0.00026 28.9 7.3 34 134-167 34-67 (79)
143 3m48_A General control protein 79.9 2.4 8.3E-05 26.9 3.8 23 148-170 7-29 (33)
144 1gk6_A Vimentin; intermediate 79.7 7.3 0.00025 26.9 6.8 50 123-172 3-52 (59)
145 3k29_A Putative uncharacterize 79.7 16 0.00055 30.7 10.0 45 91-140 54-98 (169)
146 3he4_B Synzip5; heterodimeric 79.6 6.8 0.00023 25.9 6.1 35 122-156 5-39 (46)
147 3jsv_C NF-kappa-B essential mo 79.5 9.9 0.00034 29.2 8.0 15 159-173 65-79 (94)
148 3tnu_A Keratin, type I cytoske 79.4 7.4 0.00025 30.6 7.6 9 93-101 46-54 (131)
149 1kd8_B GABH BLL, GCN4 acid bas 79.2 3 0.0001 26.9 4.2 25 137-161 4-28 (36)
150 3c3g_A Alpha/beta peptide with 79.2 3.1 0.00011 26.4 4.2 22 123-144 3-24 (33)
151 2ve7_C Kinetochore protein NUF 79.0 2.1 7.2E-05 37.5 4.7 58 112-173 123-180 (250)
152 1wlq_A Geminin; coiled-coil; 2 79.0 4.3 0.00015 30.6 5.7 28 134-161 38-65 (83)
153 4emc_A Monopolin complex subun 79.0 3 0.0001 35.8 5.5 37 120-156 20-56 (190)
154 2no2_A HIP-I, huntingtin-inter 78.7 14 0.00049 28.5 8.8 54 116-169 25-82 (107)
155 3mq9_A Bone marrow stromal ant 78.5 18 0.00061 32.9 10.9 17 157-173 445-461 (471)
156 3c3g_A Alpha/beta peptide with 78.3 4.3 0.00015 25.7 4.6 25 137-161 3-27 (33)
157 1wt6_A Myotonin-protein kinase 78.2 13 0.00043 28.0 8.0 45 124-168 28-72 (81)
158 1wle_A Seryl-tRNA synthetase; 78.1 15 0.00051 35.2 10.7 32 120-151 70-101 (501)
159 3a2a_A Voltage-gated hydrogen 78.1 5.3 0.00018 28.1 5.5 43 126-175 10-52 (58)
160 3d5a_X RF1, peptide chain rele 78.1 16 0.00055 33.9 10.5 93 86-178 4-99 (354)
161 3ghg_A Fibrinogen alpha chain; 78.0 4.1 0.00014 39.9 6.7 32 138-169 114-152 (562)
162 1lwu_C Fibrinogen gamma chain; 77.9 4.9 0.00017 36.8 6.9 47 127-173 5-51 (323)
163 3qh9_A Liprin-beta-2; coiled-c 77.9 14 0.00047 27.8 8.1 47 127-173 19-65 (81)
164 4dzn_A Coiled-coil peptide CC- 77.9 4.2 0.00014 25.3 4.4 20 147-166 8-27 (33)
165 1deq_A Fibrinogen (alpha chain 77.8 6.9 0.00023 36.9 7.9 44 121-164 114-157 (390)
166 1jcd_A Major outer membrane li 77.8 12 0.00042 25.7 7.3 46 127-172 4-49 (52)
167 1zbt_A RF-1, peptide chain rel 77.7 7.4 0.00025 36.4 8.1 90 86-178 18-117 (371)
168 2dq0_A Seryl-tRNA synthetase; 77.6 17 0.00058 34.3 10.7 52 122-173 40-101 (455)
169 2wq1_A General control protein 77.6 3.7 0.00013 26.0 4.2 16 124-139 4-19 (33)
170 1uii_A Geminin; human, DNA rep 77.6 7.6 0.00026 29.3 6.7 27 135-161 47-73 (83)
171 4etp_A Kinesin-like protein KA 77.4 6.3 0.00021 36.6 7.6 55 120-174 10-64 (403)
172 3qne_A Seryl-tRNA synthetase, 77.4 18 0.00062 34.7 11.0 51 123-173 43-103 (485)
173 3c3f_A Alpha/beta peptide with 77.4 3.8 0.00013 26.1 4.2 22 123-144 4-25 (34)
174 3ra3_B P2F; coiled coil domain 77.4 1.9 6.6E-05 26.0 2.7 21 124-144 4-24 (28)
175 2wq1_A General control protein 77.2 4.7 0.00016 25.5 4.6 25 137-161 3-27 (33)
176 1i84_S Smooth muscle myosin he 77.0 7.3 0.00025 40.6 8.7 11 81-91 782-792 (1184)
177 4h22_A Leucine-rich repeat fli 76.9 10 0.00035 29.6 7.5 48 127-174 30-77 (103)
178 3vmx_A Voltage-gated hydrogen 76.8 11 0.00037 25.8 6.6 20 127-146 18-37 (48)
179 3q0x_A Centriole protein; cent 76.8 14 0.00048 32.3 9.2 62 108-169 159-220 (228)
180 3mq9_A Bone marrow stromal ant 76.6 26 0.0009 31.8 11.5 22 151-172 446-467 (471)
181 1uii_A Geminin; human, DNA rep 76.6 9.3 0.00032 28.8 6.9 29 141-169 46-74 (83)
182 1gmj_A ATPase inhibitor; coile 76.5 10 0.00034 28.6 7.1 29 140-168 50-78 (84)
183 3vkg_A Dynein heavy chain, cyt 76.4 8.6 0.00029 44.7 9.7 24 142-165 2043-2066(3245)
184 2j5u_A MREC protein; bacterial 76.3 0.97 3.3E-05 39.5 1.7 45 117-165 16-60 (255)
185 1uo4_A General control protein 76.2 4.7 0.00016 25.7 4.4 25 123-147 4-28 (34)
186 3c3f_A Alpha/beta peptide with 76.2 5.3 0.00018 25.5 4.6 25 137-161 4-28 (34)
187 1gk4_A Vimentin; intermediate 76.1 19 0.00065 26.3 8.5 13 151-163 57-69 (84)
188 1dip_A Delta-sleep-inducing pe 75.8 5.7 0.00019 29.5 5.4 28 141-168 15-42 (78)
189 2lw1_A ABC transporter ATP-bin 75.8 13 0.00043 27.3 7.5 27 125-151 20-46 (89)
190 1ses_A Seryl-tRNA synthetase; 75.7 26 0.00089 32.6 11.3 52 122-173 37-96 (421)
191 1x8y_A Lamin A/C; structural p 75.7 19 0.00065 26.5 8.4 50 122-171 30-79 (86)
192 3u1c_A Tropomyosin alpha-1 cha 75.6 18 0.00061 27.4 8.5 7 163-169 87-93 (101)
193 3u06_A Protein claret segregat 75.3 6.5 0.00022 36.7 7.1 54 121-174 11-64 (412)
194 1s94_A S-syntaxin; three helix 75.1 11 0.00039 30.4 7.8 12 89-100 6-17 (180)
195 2wvr_A Geminin; DNA replicatio 75.1 11 0.00036 32.8 7.8 51 120-170 97-151 (209)
196 2ve7_C Kinetochore protein NUF 74.9 2 6.8E-05 37.7 3.3 66 108-173 136-201 (250)
197 2hy6_A General control protein 74.9 4.3 0.00015 25.9 3.9 24 123-146 4-27 (34)
198 2zxx_A Geminin; coiled-coil, c 74.8 11 0.00036 28.2 6.8 32 115-146 29-60 (79)
199 2dq0_A Seryl-tRNA synthetase; 74.7 14 0.00049 34.7 9.4 58 119-176 30-97 (455)
200 4b4t_K 26S protease regulatory 74.6 4.2 0.00014 38.1 5.6 46 124-169 46-91 (428)
201 2bni_A General control protein 74.6 4.1 0.00014 26.0 3.8 22 123-144 4-25 (34)
202 3w03_C DNA repair protein XRCC 74.6 6.5 0.00022 33.5 6.3 32 121-152 146-177 (184)
203 1ic2_A Tropomyosin alpha chain 74.4 18 0.00063 26.1 8.0 28 146-173 39-66 (81)
204 3jsv_C NF-kappa-B essential mo 74.1 21 0.00071 27.4 8.4 24 151-174 64-87 (94)
205 3qne_A Seryl-tRNA synthetase, 74.0 15 0.00051 35.3 9.4 55 120-174 33-97 (485)
206 3bas_A Myosin heavy chain, str 73.9 14 0.00046 27.4 7.3 18 120-137 14-31 (89)
207 2xv5_A Lamin-A/C; structural p 73.9 13 0.00045 27.0 7.0 50 123-172 8-57 (74)
208 1kd8_A GABH AIV, GCN4 acid bas 73.6 5.1 0.00018 25.8 4.1 24 138-161 5-28 (36)
209 2d4y_A HAP1, flagellar HOOK-as 73.6 14 0.00048 34.3 9.0 50 88-138 44-93 (463)
210 1uo4_A General control protein 71.8 5.8 0.0002 25.3 4.0 24 138-161 5-28 (34)
211 2c5k_T Syntaxin TLG1, T-snare 71.8 15 0.00053 27.6 7.3 53 120-172 36-92 (95)
212 1l8d_A DNA double-strand break 71.7 9.8 0.00034 28.4 6.2 35 142-176 11-45 (112)
213 2bni_A General control protein 71.7 4.3 0.00015 25.9 3.4 25 137-161 4-28 (34)
214 1a93_B MAX protein, coiled coi 71.6 6.2 0.00021 25.2 4.1 18 134-151 7-24 (34)
215 2zqm_A Prefoldin beta subunit 71.4 12 0.00041 27.9 6.6 35 119-153 69-103 (117)
216 1dip_A Delta-sleep-inducing pe 71.2 2.1 7.2E-05 31.8 2.2 26 137-162 18-43 (78)
217 4dci_A Uncharacterized protein 71.2 39 0.0013 27.7 10.1 67 108-174 24-103 (150)
218 3w03_C DNA repair protein XRCC 71.2 7.5 0.00026 33.1 5.9 36 113-148 145-180 (184)
219 4emc_A Monopolin complex subun 71.2 16 0.00054 31.3 7.9 38 120-157 27-64 (190)
220 3l4q_C Phosphatidylinositol 3- 70.9 28 0.00097 29.1 9.3 58 119-176 102-159 (170)
221 1s1c_X RHO-associated, coiled- 70.8 21 0.00073 26.0 7.5 31 124-154 3-33 (71)
222 1zhc_A Hypothetical protein HP 70.7 3.7 0.00013 29.9 3.4 22 149-170 45-66 (76)
223 1gk4_A Vimentin; intermediate 70.6 27 0.00091 25.5 8.1 22 145-166 30-51 (84)
224 2zdi_C Prefoldin subunit alpha 70.4 14 0.00047 29.4 7.1 41 115-158 96-136 (151)
225 3gp4_A Transcriptional regulat 70.3 22 0.00074 28.1 8.2 43 131-173 85-127 (142)
226 3cve_A Homer protein homolog 1 70.1 27 0.00094 25.4 8.0 44 117-160 4-47 (72)
227 2xv5_A Lamin-A/C; structural p 69.7 28 0.00097 25.2 8.0 50 125-174 3-52 (74)
228 3trt_A Vimentin; cytoskeleton, 69.6 13 0.00043 26.3 6.1 23 152-174 53-75 (77)
229 1a93_B MAX protein, coiled coi 69.5 6.1 0.00021 25.2 3.7 9 163-171 22-30 (34)
230 2oqq_A Transcription factor HY 69.4 14 0.00048 24.5 5.6 31 130-160 6-36 (42)
231 4dzn_A Coiled-coil peptide CC- 69.2 9.9 0.00034 23.6 4.6 22 125-146 7-28 (33)
232 1use_A VAsp, vasodilator-stimu 69.1 5.5 0.00019 26.9 3.7 30 144-173 10-41 (45)
233 1m1j_B Fibrinogen beta chain; 69.0 70 0.0024 30.6 12.7 16 117-132 118-133 (464)
234 3ol1_A Vimentin; structural ge 68.8 38 0.0013 26.2 9.7 17 122-138 22-38 (119)
235 3a7o_A Autophagy protein 16; c 68.7 26 0.0009 25.8 7.5 52 121-172 19-70 (75)
236 3a7o_A Autophagy protein 16; c 68.7 11 0.00036 27.9 5.4 43 121-163 33-75 (75)
237 1ses_A Seryl-tRNA synthetase; 68.5 18 0.0006 33.7 8.4 58 119-176 27-92 (421)
238 3a2a_A Voltage-gated hydrogen 68.5 12 0.00043 26.3 5.5 32 116-147 7-45 (58)
239 3onj_A T-snare VTI1; helix, HA 68.4 32 0.0011 25.7 8.3 23 151-173 68-91 (97)
240 2ve7_A Kinetochore protein HEC 68.2 7.8 0.00027 34.8 5.7 29 128-156 186-214 (315)
241 3ghg_C Fibrinogen gamma chain; 68.0 46 0.0016 31.4 11.1 71 91-164 58-128 (411)
242 3vkg_A Dynein heavy chain, cyt 68.0 17 0.00059 42.3 9.6 39 118-156 2026-2064(3245)
243 2hy6_A General control protein 68.0 7.8 0.00027 24.7 4.0 24 138-161 5-28 (34)
244 1zme_C Proline utilization tra 67.9 3.7 0.00013 28.0 2.8 24 120-143 44-67 (70)
245 1x79_B RAB GTPase binding effe 67.8 34 0.0011 26.9 8.6 15 123-137 9-23 (112)
246 1deb_A APC protein, adenomatou 67.8 18 0.00061 25.1 6.1 35 136-170 5-39 (54)
247 3u59_A Tropomyosin beta chain; 67.7 36 0.0012 25.5 9.2 9 90-98 7-15 (101)
248 2dq3_A Seryl-tRNA synthetase; 67.1 18 0.0006 33.7 8.1 51 123-173 40-100 (425)
249 1fmh_A General control protein 66.9 13 0.00043 23.1 4.7 26 122-147 3-28 (33)
250 3gpv_A Transcriptional regulat 66.8 11 0.00039 29.8 5.9 36 138-173 99-134 (148)
251 3a5t_A Transcription factor MA 66.6 0.17 5.7E-06 39.9 -4.9 31 142-172 59-89 (107)
252 2zqm_A Prefoldin beta subunit 66.4 21 0.00073 26.4 7.1 31 144-174 80-110 (117)
253 4b4t_M 26S protease regulatory 66.2 6 0.00021 37.1 4.7 48 132-179 30-77 (434)
254 4e61_A Protein BIM1; EB1-like 66.2 38 0.0013 26.4 8.5 36 125-160 9-44 (106)
255 1t6f_A Geminin; coiled-coil, c 65.7 16 0.00054 23.6 5.2 25 129-153 9-33 (37)
256 4e61_A Protein BIM1; EB1-like 65.6 13 0.00044 29.1 5.7 30 122-151 13-42 (106)
257 1gqe_A Release factor 2, RF2; 65.2 23 0.00077 33.0 8.3 18 84-101 24-41 (365)
258 1m1j_A Fibrinogen alpha subuni 65.0 30 0.001 33.5 9.2 60 91-150 64-127 (491)
259 1l8d_A DNA double-strand break 64.8 15 0.00051 27.4 5.9 29 122-150 66-94 (112)
260 2p22_A Suppressor protein STP2 64.7 17 0.00058 30.5 6.8 37 133-169 48-84 (174)
261 3oa7_A Head morphogenesis prot 64.4 17 0.00058 31.5 6.8 41 117-157 27-67 (206)
262 1t3u_A Conserved hypothetical 64.3 39 0.0013 25.0 8.2 61 87-151 32-92 (104)
263 2zvf_A Alanyl-tRNA synthetase; 64.2 6.4 0.00022 31.3 3.9 48 117-164 4-55 (171)
264 2p22_A Suppressor protein STP2 64.1 22 0.00074 29.9 7.3 48 126-173 48-95 (174)
265 2wuj_A Septum site-determining 63.9 5.4 0.00018 27.4 3.0 19 151-169 37-55 (57)
266 3oa7_A Head morphogenesis prot 63.9 20 0.00068 31.0 7.1 43 127-169 30-72 (206)
267 2e7s_A RAB guanine nucleotide 63.8 12 0.00041 30.4 5.4 16 157-172 98-113 (135)
268 3lay_A Zinc resistance-associa 63.4 36 0.0012 28.4 8.5 53 123-178 88-147 (175)
269 1fxk_A Prefoldin; archaeal pro 63.2 18 0.00062 26.5 6.1 38 117-154 62-99 (107)
270 3cvf_A Homer-3, homer protein 62.7 27 0.00092 25.9 6.8 43 118-160 11-53 (79)
271 3mud_A DNA repair protein XRCC 62.2 21 0.00072 30.1 6.9 30 127-156 135-164 (175)
272 1nfn_A Apolipoprotein E3; lipi 62.1 68 0.0023 26.6 10.5 84 88-173 69-161 (191)
273 2r2v_A GCN4 leucine zipper; co 61.9 16 0.00054 23.3 4.6 12 124-135 5-16 (34)
274 1zhc_A Hypothetical protein HP 61.5 20 0.00069 25.9 5.8 22 142-163 45-66 (76)
275 3rrk_A V-type ATPase 116 kDa s 61.2 59 0.002 28.5 10.1 19 83-101 61-79 (357)
276 2dq3_A Seryl-tRNA synthetase; 60.4 20 0.00067 33.4 7.0 58 119-176 29-96 (425)
277 1deq_A Fibrinogen (alpha chain 60.4 22 0.00075 33.5 7.3 12 90-101 65-76 (390)
278 3he5_A Synzip1; heterodimeric 60.4 35 0.0012 22.8 6.9 42 129-170 5-46 (49)
279 1m1j_C Fibrinogen gamma chain; 60.0 39 0.0013 31.7 9.0 43 132-174 89-131 (409)
280 3lss_A Seryl-tRNA synthetase; 60.0 39 0.0013 32.4 9.1 27 147-173 109-136 (484)
281 4dyl_A Tyrosine-protein kinase 59.5 74 0.0025 28.9 10.7 33 144-176 362-394 (406)
282 1joc_A EEA1, early endosomal a 59.3 51 0.0018 25.6 8.3 49 110-162 5-53 (125)
283 1fxk_C Protein (prefoldin); ar 59.2 40 0.0014 25.8 7.6 46 125-170 86-131 (133)
284 2r2v_A GCN4 leucine zipper; co 59.1 16 0.00053 23.3 4.2 23 138-160 5-27 (34)
285 1t6f_A Geminin; coiled-coil, c 58.9 17 0.00058 23.5 4.4 11 134-144 7-17 (37)
286 2xzr_A Immunoglobulin-binding 58.8 63 0.0021 25.2 10.6 82 86-173 21-108 (114)
287 2wvr_A Geminin; DNA replicatio 58.8 36 0.0012 29.5 7.8 28 115-142 110-137 (209)
288 2wg5_A General control protein 58.7 6.7 0.00023 30.1 3.0 28 152-179 11-38 (109)
289 3onj_A T-snare VTI1; helix, HA 58.4 43 0.0015 25.0 7.4 58 110-167 31-92 (97)
290 1hs7_A Syntaxin VAM3; UP-and-D 58.0 13 0.00046 28.4 4.5 34 139-172 38-74 (97)
291 1lrz_A FEMA, factor essential 57.5 33 0.0011 31.2 7.9 23 120-142 247-269 (426)
292 3a5t_A Transcription factor MA 57.4 3.6 0.00012 32.2 1.3 37 137-173 61-97 (107)
293 4b4t_J 26S protease regulatory 57.4 10 0.00036 35.4 4.6 44 128-178 26-69 (405)
294 3rrk_A V-type ATPase 116 kDa s 57.3 49 0.0017 29.1 8.8 53 120-172 226-279 (357)
295 4ani_A Protein GRPE; chaperone 57.1 20 0.0007 30.9 6.1 33 123-155 62-94 (213)
296 3sja_C Golgi to ER traffic pro 56.9 42 0.0015 24.0 6.7 21 153-173 37-57 (65)
297 2xnx_M M protein, M1-BC1; cell 56.6 50 0.0017 27.2 8.0 9 116-124 20-28 (146)
298 2qyw_A Vesicle transport throu 56.5 25 0.00087 26.5 5.9 56 110-171 46-101 (102)
299 2ve7_A Kinetochore protein HEC 56.3 11 0.00039 33.7 4.5 22 135-156 186-207 (315)
300 2w6a_A ARF GTPase-activating p 56.0 41 0.0014 23.9 6.4 31 140-170 26-56 (63)
301 1e91_A Paired amphipathic heli 55.8 13 0.00044 27.4 4.0 61 113-173 5-78 (85)
302 2wg5_A General control protein 55.7 13 0.00045 28.4 4.2 26 144-169 10-35 (109)
303 2dnx_A Syntaxin-12; snare, HAB 55.6 55 0.0019 25.5 7.9 13 89-101 25-37 (130)
304 3ra3_A P1C; coiled coil domain 55.5 5.7 0.0002 23.9 1.6 22 131-152 4-25 (28)
305 3viq_B Mating-type switching p 55.3 45 0.0015 25.1 6.9 26 124-149 5-30 (85)
306 1fxk_A Prefoldin; archaeal pro 55.3 57 0.002 23.7 9.7 17 153-169 77-93 (107)
307 3lss_A Seryl-tRNA synthetase; 55.3 61 0.0021 31.0 9.6 21 154-174 109-130 (484)
308 3lay_A Zinc resistance-associa 55.2 55 0.0019 27.2 8.3 16 158-173 116-131 (175)
309 1joc_A EEA1, early endosomal a 55.1 58 0.002 25.2 8.0 29 125-153 9-37 (125)
310 3kin_B Kinesin heavy chain; mo 55.0 16 0.00053 28.4 4.6 13 135-147 97-109 (117)
311 3mov_A Lamin-B1; LMNB1, B-type 54.2 67 0.0023 24.1 8.1 37 129-165 46-82 (95)
312 2w6b_A RHO guanine nucleotide 54.0 40 0.0014 23.6 6.0 22 120-141 10-31 (56)
313 3mud_A DNA repair protein XRCC 53.9 41 0.0014 28.3 7.3 39 114-152 129-167 (175)
314 2aze_B Transcription factor E2 53.0 31 0.001 26.5 5.9 34 122-155 8-41 (106)
315 1t3j_A Mitofusin 1; coiled coi 52.7 60 0.0021 24.8 7.4 36 89-141 33-68 (96)
316 1gs9_A Apolipoprotein E, APOE4 52.7 93 0.0032 25.3 10.7 84 88-173 69-161 (165)
317 2j69_A Bacterial dynamin-like 52.6 46 0.0016 32.5 8.5 70 89-164 311-382 (695)
318 1g6u_A Domain swapped dimer; d 52.4 43 0.0015 22.2 5.7 10 125-134 5-14 (48)
319 3s84_A Apolipoprotein A-IV; fo 52.2 1.2E+02 0.0041 26.5 11.3 17 87-103 17-33 (273)
320 2l5g_A GPS2 protein, G protein 52.2 27 0.00091 22.7 4.5 10 148-157 22-31 (38)
321 4fla_A Regulation of nuclear P 51.8 95 0.0032 25.2 9.5 21 151-171 124-144 (152)
322 3q4f_C DNA repair protein XRCC 51.3 20 0.00067 30.7 4.9 23 125-147 159-181 (186)
323 3swk_A Vimentin; cytoskeleton, 51.2 17 0.00057 26.9 4.0 34 122-155 2-35 (86)
324 1g1e_B SIN3A; four-helix bundl 51.2 30 0.001 25.7 5.4 33 114-146 9-41 (89)
325 1p9i_A Cortexillin I/GCN4 hybr 50.9 19 0.00064 22.1 3.4 23 125-147 4-26 (31)
326 3sjb_C Golgi to ER traffic pro 50.6 38 0.0013 25.9 6.0 20 119-138 22-41 (93)
327 4fla_A Regulation of nuclear P 50.6 84 0.0029 25.5 8.5 32 117-148 69-100 (152)
328 2xnx_M M protein, M1-BC1; cell 50.5 50 0.0017 27.2 7.0 26 137-162 90-115 (146)
329 3ra3_B P2F; coiled coil domain 49.6 12 0.00042 22.4 2.4 17 131-147 4-20 (28)
330 3he4_A Synzip6; heterodimeric 49.0 7.9 0.00027 26.5 1.7 15 129-143 26-40 (56)
331 2efr_A General control protein 48.8 1.1E+02 0.0038 25.1 9.5 52 122-173 58-116 (155)
332 4gkw_A Spindle assembly abnorm 48.4 1.1E+02 0.0039 25.1 9.6 25 125-149 44-68 (167)
333 3he4_B Synzip5; heterodimeric 48.3 26 0.0009 23.1 4.1 20 144-163 6-25 (46)
334 1m1j_B Fibrinogen beta chain; 48.2 64 0.0022 30.9 8.4 23 151-173 171-193 (464)
335 1lq7_A Alpha3W; three helix bu 47.7 67 0.0023 22.6 6.4 52 122-173 4-66 (67)
336 2l5g_A GPS2 protein, G protein 47.7 35 0.0012 22.1 4.5 9 153-161 20-28 (38)
337 1zxa_A CGMP-dependent protein 47.6 24 0.00082 25.4 4.2 28 142-169 26-53 (67)
338 2zdi_C Prefoldin subunit alpha 47.4 38 0.0013 26.7 5.8 47 125-171 96-142 (151)
339 2aze_A Transcription factor DP 46.9 57 0.002 27.0 6.9 44 127-170 5-48 (155)
340 4b4t_J 26S protease regulatory 46.8 24 0.00083 32.9 5.3 41 121-161 26-66 (405)
341 2aze_B Transcription factor E2 46.5 31 0.0011 26.5 5.0 33 143-175 8-40 (106)
342 3kin_B Kinesin heavy chain; mo 46.2 29 0.00098 26.9 4.8 21 153-173 94-114 (117)
343 1fzc_C Fibrin; blood coagulati 46.1 9.1 0.00031 34.9 2.2 30 142-171 19-48 (319)
344 2pnv_A Small conductance calci 46.1 41 0.0014 22.2 4.9 32 118-149 7-38 (43)
345 1vcs_A Vesicle transport throu 45.6 19 0.00064 27.2 3.6 47 115-161 47-94 (102)
346 3plt_A Sphingolipid long chain 45.0 1.5E+02 0.0052 25.9 9.7 44 127-170 104-153 (234)
347 2p2u_A HOST-nuclease inhibitor 45.0 1.3E+02 0.0043 24.6 9.3 54 115-174 18-71 (171)
348 3hhm_B NISH2 P85alpha; PI3KCA, 44.9 40 0.0014 31.1 6.3 38 130-167 222-259 (373)
349 2f05_A Paired amphipathic heli 44.9 34 0.0012 26.3 5.0 60 114-173 6-78 (105)
350 1am9_A Srebp-1A, protein (ster 44.7 28 0.00094 25.2 4.3 21 144-164 53-73 (82)
351 3azd_A Short alpha-tropomyosin 44.5 6.9 0.00024 25.0 0.8 23 122-144 6-28 (37)
352 2l7b_A Apolipoprotein E, APO-E 44.1 1.8E+02 0.006 26.0 12.1 86 87-174 76-170 (307)
353 1a93_A Coiled coil, LZ, MYC pr 44.1 30 0.001 21.9 3.7 29 139-167 5-33 (34)
354 2c5k_T Syntaxin TLG1, T-snare 43.8 99 0.0034 23.1 7.7 73 90-164 15-91 (95)
355 2ke4_A CDC42-interacting prote 43.6 91 0.0031 23.6 7.2 25 76-101 7-31 (98)
356 1grj_A GREA protein; transcrip 43.2 1.3E+02 0.0043 24.1 8.4 54 122-175 11-73 (158)
357 2q12_A DIP13 alpha, DCC-intera 43.1 1.2E+02 0.004 25.5 8.6 39 143-182 226-264 (265)
358 3cl3_D NF-kappa-B essential mo 42.8 13 0.00045 30.1 2.4 12 129-140 57-68 (130)
359 1gk6_A Vimentin; intermediate 42.8 66 0.0023 22.0 5.8 38 135-172 8-45 (59)
360 2l5g_B Putative uncharacterize 42.7 59 0.002 21.5 5.1 26 126-151 8-33 (42)
361 3mtu_E Head morphogenesis prot 42.5 1E+02 0.0034 22.8 8.0 41 117-157 27-67 (77)
362 2no2_A HIP-I, huntingtin-inter 42.5 1.1E+02 0.0038 23.4 11.9 43 131-173 58-100 (107)
363 3vp9_A General transcriptional 42.2 72 0.0025 24.2 6.3 13 89-101 11-23 (92)
364 3fx0_A NF-kappa-B essential mo 42.2 35 0.0012 26.3 4.6 8 94-101 19-26 (96)
365 3he4_A Synzip6; heterodimeric 40.9 60 0.002 22.1 5.1 36 135-170 18-53 (56)
366 2p4v_A Transcription elongatio 40.8 1.4E+02 0.0047 24.0 8.3 54 122-175 11-73 (158)
367 3plt_A Sphingolipid long chain 40.8 1.8E+02 0.0063 25.4 10.3 53 83-150 109-161 (234)
368 2er8_A Regulatory protein Leu3 40.7 13 0.00046 25.3 1.9 21 120-140 49-69 (72)
369 3hhm_B NISH2 P85alpha; PI3KCA, 40.7 83 0.0028 28.9 7.8 15 87-101 142-156 (373)
370 1gax_A Valrs, valyl-tRNA synth 40.6 49 0.0017 33.6 6.8 21 154-174 841-861 (862)
371 3gwk_C SAG1039, putative uncha 40.5 93 0.0032 21.8 8.0 16 157-172 64-79 (98)
372 1lwu_B Fibrinogen beta chain; 40.4 44 0.0015 30.3 5.8 16 145-160 32-47 (323)
373 3bbp_D GRIP and coiled-coil do 40.4 24 0.00081 25.8 3.2 7 119-125 31-37 (71)
374 1j1d_B Troponin T, TNT; THIN f 40.3 1.3E+02 0.0043 23.3 7.7 12 86-97 26-37 (106)
375 1x4t_A Hypothetical protein LO 40.2 1.2E+02 0.0039 23.2 7.2 25 153-177 57-81 (92)
376 3he5_B Synzip2; heterodimeric 40.0 83 0.0028 21.1 6.4 13 159-171 35-47 (52)
377 1ytz_T Troponin T; muscle, THI 40.0 78 0.0027 24.5 6.4 26 149-174 64-89 (107)
378 1m1j_A Fibrinogen alpha subuni 39.6 76 0.0026 30.6 7.4 46 120-165 111-156 (491)
379 3fx0_A NF-kappa-B essential mo 39.4 20 0.00067 27.7 2.8 51 83-134 12-62 (96)
380 4dnd_A Syntaxin-10, SYN10; str 39.1 1.4E+02 0.0048 23.5 9.0 55 117-171 64-128 (130)
381 2lf0_A Uncharacterized protein 39.0 94 0.0032 24.8 6.8 17 153-169 41-57 (123)
382 3l4q_C Phosphatidylinositol 3- 38.9 1.2E+02 0.0041 25.3 7.8 44 125-168 101-144 (170)
383 1yhn_B RILP, RAB interacting l 38.0 28 0.00097 25.0 3.2 20 130-149 13-32 (65)
384 3s84_A Apolipoprotein A-IV; fo 37.5 2.1E+02 0.0071 25.0 10.1 17 87-103 39-55 (273)
385 1fmh_A General control protein 37.4 58 0.002 20.1 4.2 15 154-168 14-28 (33)
386 1pd7_B MAD1; PAH2, SIN3, eukar 37.4 39 0.0013 20.3 3.3 21 108-128 1-21 (26)
387 3ni0_A Bone marrow stromal ant 36.9 1.3E+02 0.0046 23.1 7.1 10 139-148 72-81 (99)
388 3gpv_A Transcriptional regulat 36.6 85 0.0029 24.6 6.3 32 143-174 97-128 (148)
389 3nr7_A DNA-binding protein H-N 36.1 1.3E+02 0.0045 22.3 7.9 60 117-176 9-73 (86)
390 3f1i_H Hepatocyte growth facto 36.0 1.2E+02 0.004 23.4 6.7 22 136-157 64-88 (98)
391 3r2p_A Apolipoprotein A-I; amp 36.0 1.7E+02 0.0059 23.6 8.5 17 87-103 84-100 (185)
392 4b4t_L 26S protease subunit RP 36.0 28 0.00096 32.6 3.9 32 147-178 71-102 (437)
393 2z5i_A TM, general control pro 35.9 57 0.0019 22.0 4.4 15 120-134 12-26 (52)
394 2pms_C Pneumococcal surface pr 35.9 69 0.0024 25.6 5.6 15 158-172 106-120 (125)
395 4ani_A Protein GRPE; chaperone 35.7 1.1E+02 0.0038 26.2 7.3 14 160-173 138-151 (213)
396 4ad8_A DNA repair protein RECN 35.7 1.4E+02 0.0049 27.5 8.6 27 143-169 209-241 (517)
397 1fzc_C Fibrin; blood coagulati 35.5 20 0.00069 32.6 2.7 32 140-171 10-41 (319)
398 1j1d_B Troponin T, TNT; THIN f 35.5 83 0.0028 24.3 5.9 33 142-174 57-89 (106)
399 4i0x_B ESAT-6-like protein MAB 35.3 1.3E+02 0.0043 21.8 8.0 16 158-173 70-85 (103)
400 1zxa_A CGMP-dependent protein 35.1 61 0.0021 23.3 4.7 25 129-153 27-51 (67)
401 1gmj_A ATPase inhibitor; coile 35.0 1.3E+02 0.0044 22.5 6.6 26 148-173 51-76 (84)
402 2a01_A Apolipoprotein A-I; fou 34.2 1.2E+02 0.0041 25.8 7.3 17 87-103 127-143 (243)
403 1x8y_A Lamin A/C; structural p 34.0 1.3E+02 0.0046 21.8 9.8 45 129-173 30-74 (86)
404 1ytz_T Troponin T; muscle, THI 33.6 1.1E+02 0.0039 23.5 6.4 38 120-157 49-86 (107)
405 3viq_B Mating-type switching p 33.5 64 0.0022 24.2 4.8 19 122-140 10-28 (85)
406 3sja_C Golgi to ER traffic pro 33.4 95 0.0032 22.2 5.4 16 159-174 36-51 (65)
407 3q4f_C DNA repair protein XRCC 33.2 59 0.002 27.7 5.0 29 114-142 155-183 (186)
408 3gp4_A Transcriptional regulat 33.1 1.7E+02 0.0059 22.7 7.6 31 139-169 86-116 (142)
409 2nrj_A HBL B protein; enteroto 33.1 1.2E+02 0.0042 27.3 7.6 26 120-145 123-148 (346)
410 1hs7_A Syntaxin VAM3; UP-and-D 32.9 1.1E+02 0.0038 23.2 6.1 21 150-170 66-86 (97)
411 1rq0_A RF-1, peptide chain rel 32.9 32 0.0011 31.8 3.6 25 154-178 59-83 (342)
412 2z5i_A TM, general control pro 32.8 1.1E+02 0.0038 20.5 6.5 16 127-142 12-27 (52)
413 1x79_B RAB GTPase binding effe 32.7 1.8E+02 0.006 22.8 7.8 16 123-138 16-31 (112)
414 3vlc_E Golgi to ER traffic pro 32.7 37 0.0013 26.0 3.4 20 119-138 29-48 (94)
415 3csx_A Putative uncharacterize 32.3 1.3E+02 0.0046 22.3 6.3 53 122-174 17-76 (81)
416 1no4_A Late, head morphogenesi 32.2 1.6E+02 0.0055 22.1 7.3 50 117-166 23-72 (97)
417 3fav_B ESAT-6, 6 kDa early sec 32.0 1.3E+02 0.0044 20.9 7.4 23 151-173 55-77 (94)
418 4dyl_A Tyrosine-protein kinase 32.0 1.5E+02 0.0052 26.8 8.0 40 112-152 352-391 (406)
419 4ioe_A Secreted protein ESXB; 31.7 1.3E+02 0.0043 20.8 7.0 22 152-173 60-81 (93)
420 2xu6_A MDV1 coiled coil; prote 31.4 1.5E+02 0.005 21.7 6.2 48 118-165 19-66 (72)
421 2gpe_A Bifunctional protein PU 31.4 89 0.0031 19.9 4.7 31 89-125 13-44 (52)
422 3edu_A Beta-I spectrin, spectr 31.2 1.1E+02 0.0036 24.6 6.2 34 81-121 77-110 (218)
423 2js5_A Uncharacterized protein 31.1 1.5E+02 0.0052 21.5 8.0 53 122-174 5-64 (71)
424 2aze_A Transcription factor DP 30.9 77 0.0026 26.2 5.3 31 142-172 6-36 (155)
425 2jn6_A Protein CGL2762, transp 30.6 9.7 0.00033 27.2 -0.2 20 141-160 66-85 (97)
426 1no4_A Late, head morphogenesi 30.5 1.7E+02 0.0059 22.0 9.0 44 129-172 28-71 (97)
427 1cii_A Colicin IA; bacteriocin 30.3 1.9E+02 0.0064 28.3 8.5 27 111-137 375-401 (602)
428 1z0k_B FYVE-finger-containing 30.3 96 0.0033 22.4 5.1 13 144-156 49-61 (69)
429 1xkm_B Distinctin chain B; por 30.0 60 0.0021 19.1 3.2 19 112-130 3-21 (26)
430 3m0d_C TNF receptor-associated 29.9 1.4E+02 0.0047 20.7 8.9 31 121-151 7-37 (65)
431 3zbh_A ESXA; unknown function, 29.9 1.4E+02 0.0047 20.6 8.0 20 153-172 61-80 (99)
432 2gd5_A Charged multivesicular 29.7 1.6E+02 0.0054 23.8 7.0 22 125-146 26-47 (179)
433 2ke4_A CDC42-interacting prote 29.6 60 0.002 24.6 4.1 31 144-174 58-88 (98)
434 2czy_A Paired amphipathic heli 29.5 87 0.003 22.4 4.8 34 115-148 4-37 (77)
435 1f5n_A Interferon-induced guan 29.2 4E+02 0.014 25.8 10.9 18 153-170 565-582 (592)
436 2f23_A Anti-cleavage anti-GREA 28.9 2.2E+02 0.0074 22.5 7.7 55 122-176 12-74 (156)
437 3p01_A Two-component response 28.6 49 0.0017 25.1 3.5 60 112-172 2-61 (184)
438 4aj5_1 SKA3, spindle and kinet 28.4 2E+02 0.007 22.2 8.8 58 115-172 37-98 (101)
439 4dk0_A Putative MACA; alpha-ha 28.4 2.3E+02 0.0079 24.3 8.3 22 151-172 125-146 (369)
440 1hlo_A Protein (transcription 28.2 90 0.0031 22.1 4.7 20 151-170 60-79 (80)
441 2de0_X Alpha-(1,6)-fucosyltran 28.1 2.2E+02 0.0075 27.2 8.7 60 80-141 48-110 (526)
442 2pms_C Pneumococcal surface pr 28.1 65 0.0022 25.8 4.2 9 93-101 21-29 (125)
443 3opc_A Uncharacterized protein 28.1 2.1E+02 0.0071 22.1 8.1 25 149-173 42-66 (154)
444 3t97_C Nuclear pore glycoprote 27.9 1.1E+02 0.0039 21.5 5.1 40 116-155 8-47 (64)
445 2oa5_A Hypothetical protein BQ 27.9 41 0.0014 26.5 3.0 23 122-144 10-32 (110)
446 3ogh_B Protein YCIE; iron-bind 27.8 1.6E+02 0.0056 24.2 6.8 58 120-180 12-72 (171)
447 4dnd_A Syntaxin-10, SYN10; str 27.8 1.6E+02 0.0056 23.1 6.6 34 145-178 64-97 (130)
448 3kqg_A Langerin, C-type lectin 27.7 81 0.0028 24.4 4.8 13 125-137 4-16 (182)
449 3sjb_C Golgi to ER traffic pro 27.4 1.8E+02 0.0062 22.1 6.4 18 134-151 23-40 (93)
450 3hiu_A Uncharacterized protein 27.4 1.7E+02 0.0059 23.9 6.9 58 122-182 11-71 (166)
451 3swy_A Cyclic nucleotide-gated 27.2 1.4E+02 0.0048 19.9 5.7 20 121-140 6-25 (46)
452 1j1e_C Troponin I, TNI; THIN f 26.7 2.9E+02 0.0098 23.3 9.6 49 82-136 33-81 (180)
453 1j1d_C Troponin I, TNI; THIN f 26.6 2.5E+02 0.0084 22.5 11.0 54 82-141 33-86 (133)
454 3uux_B Mitochondrial division 26.5 2.3E+02 0.0078 25.0 7.8 6 143-148 179-184 (242)
455 3tul_A Cell invasion protein S 26.5 2.6E+02 0.009 23.1 7.7 20 144-163 103-122 (158)
456 3q0x_A Centriole protein; cent 26.4 2.8E+02 0.0095 24.0 8.3 34 125-158 183-216 (228)
457 3r2p_A Apolipoprotein A-I; amp 26.4 2.5E+02 0.0087 22.6 8.5 8 94-101 58-65 (185)
458 1lrz_A FEMA, factor essential 26.2 1.3E+02 0.0044 27.2 6.5 32 116-147 219-267 (426)
459 2w6b_A RHO guanine nucleotide 26.2 1.7E+02 0.0057 20.4 7.9 23 127-149 10-32 (56)
460 2b3t_B RF-1, peptide chain rel 26.1 22 0.00074 33.1 1.2 88 89-177 11-102 (360)
461 1f5n_A Interferon-induced guan 25.9 4.6E+02 0.016 25.4 11.0 15 160-174 565-579 (592)
462 2qyw_A Vesicle transport throu 25.8 2.1E+02 0.0071 21.3 8.1 42 114-155 57-99 (102)
463 3nr7_A DNA-binding protein H-N 25.7 1.4E+02 0.0047 22.1 5.4 7 146-152 36-42 (86)
464 2qih_A Protein USPA1; trimeric 25.6 2.8E+02 0.0095 22.8 8.8 31 122-152 42-72 (157)
465 3h6p_C ESAT-6-like protein ESX 25.4 1.3E+02 0.0043 21.3 5.1 50 126-175 12-73 (96)
466 1jad_A PLC-beta, phospholipase 25.4 3.5E+02 0.012 23.8 9.4 16 86-101 102-117 (251)
467 2ihr_1 Peptide chain release f 25.4 22 0.00075 33.1 1.1 75 88-169 20-103 (365)
468 1fmh_B General control protein 25.1 1.3E+02 0.0043 18.6 4.4 25 122-146 3-27 (33)
469 2p90_A Hypothetical protein CG 24.7 56 0.0019 29.3 3.7 38 136-173 231-268 (319)
470 1yzm_A FYVE-finger-containing 24.7 1.7E+02 0.0058 19.9 5.5 19 142-160 29-47 (51)
471 3vlc_E Golgi to ER traffic pro 24.7 37 0.0013 26.0 2.1 15 137-151 33-47 (94)
472 1g70_B RSG-1.2 peptide; peptid 24.5 39 0.0013 19.9 1.7 7 82-88 12-18 (26)
473 3ilw_A DNA gyrase subunit A; D 24.5 1.5E+02 0.0051 28.4 6.7 8 115-122 371-378 (470)
474 4b4t_L 26S protease subunit RP 24.3 65 0.0022 30.1 4.1 24 146-169 77-100 (437)
475 1dn1_B Syntaxin 1A, syntaxin b 24.2 1.6E+02 0.0054 25.3 6.4 11 146-156 71-81 (267)
476 2yko_A LINE-1 ORF1P; RNA-bindi 24.2 1.4E+02 0.0047 26.2 5.9 38 117-154 10-47 (233)
477 3vbb_A Seryl-tRNA synthetase, 24.1 1.1E+02 0.0037 29.6 5.8 20 154-173 111-130 (522)
478 4ayc_A E3 ubiquitin-protein li 23.9 2.3E+02 0.0079 21.3 6.7 9 124-132 6-14 (138)
479 3mov_A Lamin-B1; LMNB1, B-type 23.9 2.3E+02 0.0078 21.1 10.3 39 135-173 45-83 (95)
480 1z0k_B FYVE-finger-containing 23.8 1.3E+02 0.0044 21.7 4.8 21 135-155 47-67 (69)
481 2gkw_A TNF receptor-associated 23.8 1.2E+02 0.0042 24.4 5.3 27 124-150 4-30 (192)
482 2k48_A Nucleoprotein; viral pr 23.6 2.6E+02 0.009 21.8 8.1 50 122-171 37-98 (107)
483 2vz4_A Tipal, HTH-type transcr 23.3 89 0.003 22.9 4.0 59 117-175 46-108 (108)
484 2d8d_A Aroag, phospho-2-dehydr 23.2 1.6E+02 0.0054 21.0 5.3 53 122-174 5-57 (90)
485 2b9c_A Striated-muscle alpha t 23.0 58 0.002 26.3 3.1 58 115-172 89-146 (147)
486 3rvy_A ION transport protein; 22.9 20 0.00069 30.4 0.4 48 112-159 232-281 (285)
487 3cl3_D NF-kappa-B essential mo 22.8 33 0.0011 27.7 1.6 57 118-174 4-67 (130)
488 3rvy_A ION transport protein; 22.7 18 0.00061 30.7 0.0 41 133-173 241-281 (285)
489 2vkl_A RV0948C/MT0975; helical 22.7 2E+02 0.0068 20.9 5.8 36 122-157 14-49 (90)
490 1s94_A S-syntaxin; three helix 22.7 1.9E+02 0.0067 22.9 6.3 64 110-173 43-106 (180)
491 1lwu_B Fibrinogen beta chain; 22.7 1.2E+02 0.0041 27.4 5.5 45 125-169 7-56 (323)
492 1cii_A Colicin IA; bacteriocin 22.7 4.6E+02 0.016 25.6 9.7 59 115-173 358-416 (602)
493 2gd5_A Charged multivesicular 22.6 1.7E+02 0.0057 23.7 5.9 40 131-170 11-50 (179)
494 1d7m_A Cortexillin I; coiled-c 22.6 2.6E+02 0.0089 21.4 8.0 50 125-174 2-51 (101)
495 1dkg_A Nucleotide exchange fac 22.6 1.9E+02 0.0064 24.2 6.4 39 131-172 39-77 (197)
496 3swf_A CGMP-gated cation chann 22.6 1.9E+02 0.0065 21.1 5.5 35 139-173 5-39 (74)
497 2lem_A Apolipoprotein A-I; lip 22.4 1.4E+02 0.0047 24.9 5.5 72 87-171 82-162 (216)
498 2gs4_A Protein YCIF; stress pr 22.4 2.4E+02 0.0083 22.8 6.8 60 119-179 11-71 (166)
499 1tu3_F RAB GTPase binding effe 22.3 1.1E+02 0.0036 22.8 4.1 46 124-169 9-54 (79)
500 1q06_A Transcriptional regulat 22.1 2.3E+02 0.0078 21.6 6.4 58 117-174 45-105 (135)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.77 E-value=9.3e-19 Score=131.84 Aligned_cols=72 Identities=28% Similarity=0.423 Sum_probs=65.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk 147 (235)
++.+|+.+||+||++||++|.+|+++| |+...|+||++||.+||+||++|+.+++.|+.+++.|+..++..+
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lv-P~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLV-VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999 555689999999999999999999999999999999988765443
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.75 E-value=1.8e-18 Score=129.62 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=63.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
++.+|+.+||+||++||+.|.+|+++||.....|+||++||..||+||++|+.+++.|+.+.+.|..++..|++++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999955445799999999999999999999988887766665555544444443
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.72 E-value=1e-17 Score=128.00 Aligned_cols=78 Identities=26% Similarity=0.368 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGR--PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~--~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
.+.+|+.+||+||++||++|..|+++| |.. ..|+||++||.+||+||++|+.+.+.+..+.+.|+.+...|+.++.+
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~v-P~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQI-PELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-GGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999 543 36999999999999999999999998888777666666666555555
Q ss_pred h
Q 026702 153 L 153 (235)
Q Consensus 153 L 153 (235)
|
T Consensus 85 L 85 (88)
T 1nkp_A 85 L 85 (88)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.70 E-value=4.4e-17 Score=122.65 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 76 SGSKACREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 76 ~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
+.+|+..||+||+.||++|..|+++||.. ...|++|++||.+||+||++|+.+.++|..+++.|+.+...|+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999532 347999999999999999999999999998888887777777666554
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.68 E-value=3.8e-17 Score=130.80 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=51.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGR--PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~--~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
++.+|+..||+||++||++|.+|+++||++. ..|+||++||.+||+||++|+.+++.|+++... ...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~-----------~~~ 95 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR-----------QKK 95 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 5889999999999999999999999995543 248999999999999999999999998875322 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|+.++..|...+..||.|.++
T Consensus 96 l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 96 LEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555565566666655543
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=1.5e-16 Score=118.70 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
.+.+|+.+||+||+.||+.|.+|+++||.....|++|++||..||+||+.|+.+++.|+.+++.|+.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999954444699999999999999999999999998888877643
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=115.03 Aligned_cols=58 Identities=33% Similarity=0.492 Sum_probs=52.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLK 133 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk 133 (235)
.+.+|+..||+||++||++|.+|+++| |+...|+||++||..||+||++|+.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~Lv-P~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSML-PGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-SSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhC-CCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 477899999999999999999999999 5556799999999999999999999876554
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=9.5e-16 Score=110.05 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=49.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCC----CCCchhhhHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRP----PKMDKTVLLADAVQMVTQLRDEAQ 130 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~----~K~dKasIL~dAI~yIk~Lr~~vq 130 (235)
++.+|+..||+||++||++|.+|+++||+... .|+||++||.+||+||++|+.+.+
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999955432 389999999999999999997653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=2.6e-15 Score=108.35 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=48.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC-----CCCCCchhhhHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG-----RPPKMDKTVLLADAVQMVTQLRDEA 129 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-----~~~K~dKasIL~dAI~yIk~Lr~~v 129 (235)
++.+|+.+||+||++||++|.+|+++||+. ...|.+||+||..||+||++|++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999532 1368899999999999999998765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=1e-14 Score=108.26 Aligned_cols=54 Identities=37% Similarity=0.419 Sum_probs=47.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCchhhhHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG--RPPKMDKTVLLADAVQMVTQLRDE 128 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~--~~~K~dKasIL~dAI~yIk~Lr~~ 128 (235)
++.+|+..||+||++||++|.+|+++||.+ ...|+||++||..||+||+.|+..
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 577899999999999999999999999432 136999999999999999999753
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.44 E-value=3.9e-14 Score=105.85 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=48.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCC-chhhhHHHHHHHHHHHHHHHHHHH
Q 026702 74 SASGSKACREKMRRDRLNDRFMELASILDPG-RPPKM-DKTVLLADAVQMVTQLRDEAQKLK 133 (235)
Q Consensus 74 ~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~-dKasIL~dAI~yIk~Lr~~vq~Lk 133 (235)
.++..|+.+||+||+.||++|.+|+.+||++ ...|. +|++||..||+||+.|+.++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999532 23465 899999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.24 E-value=2.2e-12 Score=94.58 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=49.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHH
Q 026702 74 SASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEA 129 (235)
Q Consensus 74 ~~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~v 129 (235)
.++..|+.+||+|+..||+.|..|+.+||.....|++|+.||..||+||..|+..+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999995433469999999999999999998754
No 13
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.16 E-value=3.2e-10 Score=86.33 Aligned_cols=76 Identities=25% Similarity=0.377 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhcCCC--CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPG--RPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~--~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
|..||++|.+|+.+||+. ...|.+|++||..||+||+.|++++++++++...+ ..|...+..|.-.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~-----------k~le~~n~~l~~ri 72 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ-----------KKLEHANRHLLLRV 72 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhhHHHHHHH
Confidence 889999999999999653 23699999999999999999999998888754432 12333444444445
Q ss_pred HHHHHHHHH
Q 026702 165 ENLERQVKA 173 (235)
Q Consensus 165 e~Le~qlk~ 173 (235)
-.||-|.++
T Consensus 73 qELE~qa~~ 81 (83)
T 4ath_A 73 QELEMQARA 81 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.14 E-value=3.7e-11 Score=108.54 Aligned_cols=53 Identities=34% Similarity=0.541 Sum_probs=42.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDE 128 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~ 128 (235)
++.+|+..||+||++||+.|.+|+++| |+...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~-p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSML-PGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTC-CSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999999999 55567999999999999999998754
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.13 E-value=4.3e-11 Score=85.59 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=48.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVTQLRDEAQ 130 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk~Lr~~vq 130 (235)
++..|+.+||+|+..||+.|..|+.+||.. ...|.+|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999432 24699999999999999999997653
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=6.9e-10 Score=101.58 Aligned_cols=54 Identities=37% Similarity=0.419 Sum_probs=47.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCchhhhHHHHHHHHHHHHHH
Q 026702 75 ASGSKACREKMRRDRLNDRFMELASILDPG--RPPKMDKTVLLADAVQMVTQLRDE 128 (235)
Q Consensus 75 ~~~~h~~~ERrRRdklNd~F~~Lr~lLpP~--~~~K~dKasIL~dAI~yIk~Lr~~ 128 (235)
++.+|+..||+||++||+.|.+|+.+||.. ...|+||++||..||.||+.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999999999421 247999999999999999999853
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.71 E-value=3.9e-09 Score=77.69 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHHHHHH
Q 026702 79 KACREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVTQLRD 127 (235)
Q Consensus 79 h~~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk~Lr~ 127 (235)
-+++||+|+..||+.|..||.+||.- ...|++|..||.-||+||..|+.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34699999999999999999999421 23599999999999999999974
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.91 E-value=1.7e-05 Score=61.79 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHH
Q 026702 81 CREKMRRDRLNDRFMELASILDPG-RPPKMDKTVLLADAVQMVTQLRDEAQK 131 (235)
Q Consensus 81 ~~ERrRRdklNd~F~~Lr~lLpP~-~~~K~dKasIL~dAI~yIk~Lr~~vq~ 131 (235)
..||.|=..||+.|..||..||.. ...|.+|..||.-||+||..|+..++.
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888999999999999421 236999999999999999999987654
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.70 E-value=0.0003 Score=53.26 Aligned_cols=60 Identities=25% Similarity=0.448 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+..||+-|.-|+-++..|+.+|..|.++..+++.....|+.|+.+|+.|...++..|.++
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999988888777653
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.94 E-value=0.0054 Score=46.35 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-------HHHHHHHHHHHHHHh
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQR-------LKNEKENLERQVKAL 174 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~-------Lk~e~e~Le~qlk~~ 174 (235)
.+.+.+|..+|+.+-+++.-|+.++++||.+.+.|.++++. |..|+++|+++...+
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999888888888877 666777777776654
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=96.61 E-value=0.012 Score=41.78 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 83 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
||++|-+..++..+-+.-- .-..|+.+|+.++..|+.+|..|..+|..|+.|+..|+.
T Consensus 1 Ekr~rrrerNR~AA~rcR~---------------rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRN---------------RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777766654 224788888888888888888887777666666555443
No 22
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=96.44 E-value=0.0044 Score=45.45 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
-.||++|+.+|..|+..+..|..++..|+.++..|+.|+..|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468888888888888877776666655555555555555443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.38 E-value=0.031 Score=45.47 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhh--cCCCCCCCCchhhhHHH---HHHHH------HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASI--LDPGRPPKMDKTVLLAD---AVQMV------TQLRDEAQ-------KLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 88 dklNd~F~~Lr~l--LpP~~~~K~dKasIL~d---AI~yI------k~Lr~~vq-------~Lk~~n~~L~~ei~~Lk~E 149 (235)
..+|+++.+++.. - |. --.++.+||.- |=+|+ ..|+.+++ .|+.++..++.+++.++.+
T Consensus 35 ~~vd~km~ei~~~~~~-~~--l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 35 SYINNKITEFNKEESY-RR--MSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHTTCHHH-HT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999966 6 42 36688888763 11222 22222333 3333344444445555555
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 150 KNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.+|++++..|+.++-+||..++.
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666666655543
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.15 E-value=0.023 Score=46.27 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
-|..|+.++..++..++.+..++.+|+.++++|+.++..|.++.+
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555443
No 25
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=96.13 E-value=0.026 Score=44.18 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=36.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK-------INELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e-------i~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.|+|..++.+-+ +|...+..|+.++..|+.. |.+|..|+..|+.||+.|+.|.+-..+
T Consensus 29 ~mSKqELIqEYl----~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 29 NMSKQELIKEYL----ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp TSCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678888887543 3777777788877777764 455555555555555555554444433
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=95.82 E-value=0.013 Score=40.74 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=13.5
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 117 DAVQMVTQLRD-------EAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 117 dAI~yIk~Lr~-------~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
+|++||++--+ .++.|+.+|+.|+.++..|+.+..||+.
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889887643 3455555555555444444444444433
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.32 E-value=0.038 Score=38.65 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
.|+.+|+.++..|+.+|..|..++..|+.|+..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555555555544444444333
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.29 E-value=0.066 Score=41.79 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------HhHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKN----------------------------ELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn----------------------------ELr~E~~~Lk~e~e~Le~qlk 172 (235)
-+..|+.+++.|+.+++.|.++++.|+.++. ..+.+...|++|+++|...++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776666655553 234445567777777776666
Q ss_pred Hhc
Q 026702 173 ALS 175 (235)
Q Consensus 173 ~~~ 175 (235)
.|.
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 543
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.13 Score=42.94 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
|+.+-.+|.+|-.-+ .+.++. +=+|=+..-+.-|..|+.+...|+..+..|.+++++-......|+||...|..+..-
T Consensus 37 Rd~~E~~~~~l~~e~-~~~~~~-~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~ 114 (152)
T 3a7p_A 37 RNDKEAHLNELFQDN-SGAIGG-NIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV 114 (152)
T ss_dssp ---------------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhh-ccCCCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655666665554 211111 122333344567777777777777777777777766666667788888877777777
Q ss_pred HHHHHHH
Q 026702 167 LERQVKA 173 (235)
Q Consensus 167 Le~qlk~ 173 (235)
++..++.
T Consensus 115 lE~kl~k 121 (152)
T 3a7p_A 115 LQQKLSD 121 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=95.02 E-value=0.059 Score=36.04 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
.|+.+|+.++..|+..|..|.+.+..|..|...||.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 599999999999999999999988888877777664
No 31
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.88 E-value=0.042 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
+|+.+|+.++..|+.+|..|..++..|+.|+..|+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776666666655555554443
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.49 E-value=0.11 Score=38.39 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
-|.+|+..+++-.+++...++.|++|..++.|..++...|+.++++++
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 388888888888888888888899999999999998898888888774
No 33
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.42 E-value=0.38 Score=36.53 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLL------------GKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~------------~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+-|+.|+.+...|+.+...++ .+|.+|+.++.++..|+.+|..|++.|+..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665544433 457778888888888888888888887776654
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.96 E-value=0.16 Score=35.47 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
....|+.+++.|+.+..+|+.+...|+.|+..|.++|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666667777777777776666654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.92 E-value=0.26 Score=46.20 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH----hcCCCC
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLERQVKA----LSSQPA 179 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~----~~~~p~ 179 (235)
.++.+++....+.++....|+.|...+.++++. .+.+|+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333334443334444445555555555555554 345554
No 36
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.68 E-value=0.47 Score=35.94 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|...-+.....-+.+-++-.....++..+..+|..||..|+.+++.|+.++..
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333444444434444445555555666666666666666555544
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=93.63 E-value=0.072 Score=36.96 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek 150 (235)
.||.+|+.+|..|+.+|..|..++..|+.+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777777776666665543
No 38
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.60 E-value=0.2 Score=34.04 Aligned_cols=43 Identities=35% Similarity=0.373 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
.|++.+..|++.|-+|+..-..|..-+..||+|..+|..|...
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4888999999999888877777777778888887777666543
No 39
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.37 E-value=0.6 Score=34.63 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.|...-+......+.+-++-.....++.....+|..||..|+.+++.|+.++..+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444555555555555555666666777777777777777777776654
No 40
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.15 E-value=0.4 Score=35.29 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.+..+++.++..|..|++.+..|+...++-+.+-..++.|+.++-++|..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888888888888888888888888888888888888887776543
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.75 E-value=0.36 Score=33.97 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
...|+.++..|+.+..+|+.+...|+.|+..|...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666654
No 42
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.69 E-value=0.54 Score=35.87 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+..|+.+++.|+.+-..|..++..|..+...|..+...++.+.++|.+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666666666666666666666666666655
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=92.52 E-value=0.17 Score=35.94 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=13.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+.+|..+..+|..+|..|+.+++.|.++|
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555554444
No 44
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.50 E-value=0.68 Score=36.61 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKI 143 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei 143 (235)
+++|+..+..|+.+++.++.+.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.48 E-value=0.75 Score=32.43 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
.+|=..=+.+.+.|+.+.+.|..+..+|+.+++.|+.|+..|
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333444444444444444444444444444444333
No 46
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.47 E-value=1.6 Score=34.57 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~ 173 (235)
++..+|+.|+.||..
T Consensus 87 kl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 455555555555544
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.15 E-value=2.7 Score=39.34 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.++++++.+.++..+++.+....|+++|++.+++|+..|++.+..
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445566677777777777777777777777777777777665
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=92.10 E-value=0.15 Score=35.69 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
...|+.++..|..+..+|+.+...|+.|+..|.++|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554444
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.89 E-value=1.8 Score=34.39 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=33.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSN----EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n----~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.+|-.++..=-+-|..|+.+++.++.+. ..|+..|..|..|..+-+..++....|.+.|..++..+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333444444444443322 23444455555565555555566666677777766653
No 50
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=91.74 E-value=1.2 Score=33.48 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
=|.-|++|+-.|..|+.+..+-.-+++.-|.|+..|++....=.+++++|+.||-
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3467888888888887665555555666777777788877777788888888774
No 51
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=91.63 E-value=1.7 Score=29.60 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-+..|+..+..++.....+..+...++...+++..+....+.++.+++.|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555666666666666666666666677777666653
No 52
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=91.63 E-value=0.24 Score=44.25 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 026702 161 KNEKENLERQVKALSSQPA 179 (235)
Q Consensus 161 k~e~e~Le~qlk~~~~~p~ 179 (235)
+.|+++|+.||+.+..||.
T Consensus 81 r~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 81 RQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 3344444455555566663
No 53
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.51 Score=43.97 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
|.+|+.++..|+++...|+++++.++.+..+|.+..........+|..+++.+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788888888888888888888888888888877777777777777777753
No 54
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=91.44 E-value=0.21 Score=44.61 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+.+|+.++..|..+.++|+.+.+++++|...||.|+++|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444555555555555666677777777778888888766
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.43 E-value=0.4 Score=34.96 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..|+.++.+|..+...|..|+..|+.+++.|..+++.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666667777777777777777654
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.38 E-value=0.66 Score=34.67 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..+++.++..|..|++.+..|+...++-+.+-..++.|+.++-++|..
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777777888888888888888888888878888888877776543
No 57
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.36 E-value=1.3 Score=37.80 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCE----KNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E----knELr~E~~~Lk~e~e~Le~ql 171 (235)
.-+++|+.++..|+.+++.++.+.+....+ .+.|++|.+.|+..++.|...|
T Consensus 56 k~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 56 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333 4444555445554444444443
No 58
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=90.91 E-value=1.2 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
+.=++.-+..|+.++..|..+|+.|+.+++.|..+..+
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554444444444433
No 59
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=90.75 E-value=0.78 Score=31.62 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
+-+.+|+.++..|...|++|.+..+ +-|++...|+.++++|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~-------~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 3455677777777777777755544 4444555555566655
No 60
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.65 E-value=2.1 Score=33.73 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+.+|-+....|...-..|+..+..|.+.+.+.....++|..++..|..+++.|+.+|...
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766666666666666666666777777777777666653
No 61
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.56 E-value=1.1 Score=30.06 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
..+.||+.++..|+.+|+.|..+
T Consensus 3 nlvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHh
Confidence 45788999999999999988754
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.55 E-value=0.57 Score=36.48 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPAFLP 182 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~~~p 182 (235)
+++..|+.++++|+.|+.+|+.+++.||-+|......-.|-|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 456778888888888888888899999999888554334433
No 63
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.52 E-value=0.69 Score=48.23 Aligned_cols=17 Identities=47% Similarity=0.730 Sum_probs=8.1
Q ss_pred HhHHHHHHHHHHHHHHH
Q 026702 152 ELRDEKQRLKNEKENLE 168 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le 168 (235)
.|++|++.|+++++.|+
T Consensus 1027 ~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.38 E-value=1.1 Score=35.61 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
-.|..++=+||.+|+.+|..|+.+++.-+. ++.+...|+..|+.+++.|+.
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~-------~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAEQQH-------LRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999988766443 344555555566666665533
No 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.35 E-value=1 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 026702 153 LRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
|++....|+.|+.+|++|+..++
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777777777766543
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.21 E-value=1.3 Score=33.61 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
..|+..+..+..++..|.-|...|..+.++++
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 67
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.12 E-value=2 Score=36.15 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
|+.|-.-+..|.+.|.- .+.+ ...+-+.|.+|+.+++.|..+++.+......+..++..|.+....|..++..
T Consensus 64 k~~Leke~~~LQa~L~q---Er~~----r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEA---ERRD----RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555522 1111 2233455556666666666666555555555555555555555555555555
Q ss_pred HH
Q 026702 167 LE 168 (235)
Q Consensus 167 Le 168 (235)
++
T Consensus 137 ~e 138 (168)
T 3o0z_A 137 LE 138 (168)
T ss_dssp HH
T ss_pred hh
Confidence 55
No 68
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.09 E-value=0.75 Score=36.91 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.+.|+.||+.|+.++.+...|..+|+.+.+-|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3444444444444444444444444444443333
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.96 E-value=1.5 Score=34.02 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
++-+-|.+|+.++...+.+...|..+..+-+....+...++..+..|+|.|-
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333333333444444444433
No 70
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=89.95 E-value=1.6 Score=30.29 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
.||-.+|+.|+.+|..|+.|.++=...++.|..|...+|.=...|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 467888999999999888877766666666666666665444443
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.84 E-value=1.3 Score=43.44 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVT-QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk-~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
|..++..+..+..+| + .+...+.=+..++.-|. +|+.+++-|+.++..-...|+.|+.-+.+++.+.++|..+|+
T Consensus 80 sKdseqy~k~~~E~L---r-~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 80 NKDSHSLTTNIMEIL---R-GDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHTT---S-SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH---H-HHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777 2 23344444455554444 888888888887765557788888888888888888877764
No 72
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.72 E-value=0.59 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
+++.++..|+.+|..|+.+|..|+.|...
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444443
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=89.67 E-value=1.4 Score=30.39 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 138 KLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.|+.++..|......|-+-....+.++++|..+|..+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444554556666666666666666666654
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.50 E-value=0.51 Score=32.56 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
++..|+.|..+|+.+...|+.+++.|..+|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555543
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.39 E-value=1.8 Score=34.77 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+++|+-|+..|..+.+..-+|+|+|..+...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 35555555555555555555555555555443
No 76
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.07 E-value=3.4 Score=31.96 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 157 KQRLKNEKENLERQVK 172 (235)
Q Consensus 157 ~~~Lk~e~e~Le~qlk 172 (235)
...++...++|+.||+
T Consensus 78 ~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 78 KYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444554444
No 77
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=89.02 E-value=0.37 Score=28.87 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
|+-+|+.++-+|+-+...|..|+++|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 44566666666666555555555544
No 78
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.99 E-value=1.8 Score=35.98 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNE 137 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~ 137 (235)
|..||++...|..++..++.+++
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 45566666666665555555544
No 79
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.64 E-value=0.66 Score=33.82 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
|+.|..+..+|..|+..|+.+++.|+++|..+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666777777777777777776654
No 80
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=88.46 E-value=1.9 Score=30.47 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
..|+.+|+.++..|+.+|..|..++..|+.+..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378888888888888888888777777766543
No 81
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=88.43 E-value=1.7 Score=40.64 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
..|+.++.+|++..++|+.+++.++.+..++.++......+..+|..++..+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46888888888888888888888888888888887777777777888887764
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.37 E-value=0.73 Score=34.18 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
..+++.++..|+.+|..|+.+|..|+.|...|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777666666655555555443
No 83
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=88.27 E-value=1.2 Score=31.97 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
+.++|+|-+-|..|.+|++.|..+++.|+.||..|+.
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3567788888888888888888888888888888763
No 84
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=88.11 E-value=1.7 Score=32.16 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
++|++.|++|+..++.|+.....|-+| +..-.++||+.+.+||.+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 357888888888888888877666555 4455679999999999999973
No 85
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.08 E-value=3.2 Score=32.45 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=12.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+..|++..++..--+..|..+++.|+.+|
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444455554443
No 86
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=88.03 E-value=3.4 Score=38.88 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 90 LNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 90 lNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+++.+..|....-++ .+ .+......++.+++.+..++.+|+..+..-.++|+.|+...+.++...+.|+.++..|+.
T Consensus 57 v~~Lvk~iq~~~~~~--Q~-~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 57 IEYLIQHIKTIYPSE--KQ-TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHSCSS--TT-CCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccc--cC-CCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455555555342 22 344555666999999999999998877777777777777776665555555555544443
No 87
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.02 E-value=5.7 Score=28.88 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.|.+-+.++...+...+.....+.+++..|+..+..|.++...+.......+..|..
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666667666666666666666655555555555543
No 88
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.78 E-value=2.3 Score=36.73 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-|..|+.++..++.....++.++.+++.++..+..+...++..+++.+.++..
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444555555555555555555555555555555555543
No 89
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.75 E-value=3.1 Score=28.23 Aligned_cols=50 Identities=28% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
.-+++.++...+..++.+...+...++.+...++..+++...++.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777777888888888888888888888888888888887753
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.70 E-value=5.2 Score=30.39 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
.|++-..+++..+..++..+.++.+++..|...+..|.++...+..
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666655555555443333
No 91
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.68 E-value=5 Score=30.32 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
..|++-..+++.++..++..+.++.+++..|+..+..|.++...+.......
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777776666666666654444443333
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.56 E-value=3.6 Score=34.16 Aligned_cols=79 Identities=22% Similarity=0.200 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 89 RLNDRFMELASILDPGRP---PKMDKTVLLADAVQMVTQLRDEAQKLK-------VSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~---~K~dKasIL~dAI~yIk~Lr~~vq~Lk-------~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
++++.|.++....++ +. .++.. ..|..--.-+..|+.++..|+ ..++.|+.|+..|..+.|.+.+...
T Consensus 43 ~~~~l~~e~~~~~~~-~~vs~~~~~~-~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 43 HLNELFQDNSGAIGG-NIVSHDDALL-NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp --------------C-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCc-ccccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655533 10 01111 133333344555666665555 4466788888888888888888888
Q ss_pred HHHHHHHHHHH
Q 026702 159 RLKNEKENLER 169 (235)
Q Consensus 159 ~Lk~e~e~Le~ 169 (235)
.|+.|...|=+
T Consensus 121 kLq~EN~~LV~ 131 (152)
T 3a7p_A 121 DLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888766544
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=87.48 E-value=1.5 Score=33.45 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..|+.+...|..+++.|+.|+..+..|++.+.+.++.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666777777777777777777766654
No 94
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=87.33 E-value=2.4 Score=28.65 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+|++.|++|+...+.|+.....|-+| ...-..+||..+.+||.++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 57778888888888888776666555 4445678899999998763
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.86 E-value=1.2 Score=33.96 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
..|+.++..|+.+++.|+.|..++..|...+|...+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555554443
No 96
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=86.79 E-value=5.5 Score=29.64 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
.|+..-+.|+.--.+|+.-+..|..|.++|......|+...+.|+
T Consensus 29 sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 29 ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666766677777777777776666666665554
No 97
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=86.63 E-value=3.6 Score=32.15 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|.-|+..+..+++.+..++.+.++..++.+.++.....|+.++..|+.||+.
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666677777777777777776
No 98
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.31 E-value=3.4 Score=30.72 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
++.++..|++..+++.--+..|..+++.|..+|.-+
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666777778888887777644
No 99
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.00 E-value=14 Score=30.96 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Q 026702 81 CREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK-QR 159 (235)
Q Consensus 81 ~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~-~~ 159 (235)
..||+=|....+.+.+|-.-+ .....-|+.++....++..++..|++.+..|..|++.+.=+. =.
T Consensus 79 ~qEr~~r~q~se~~~elq~ri--------------~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~e 144 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARI--------------TSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYK 144 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 468888888888888887755 123345566677777788888888888888888888877443 46
Q ss_pred HHHHHHHHHHHHHHh
Q 026702 160 LKNEKENLERQVKAL 174 (235)
Q Consensus 160 Lk~e~e~Le~qlk~~ 174 (235)
||+=-.++++++++.
T Consensus 145 LKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 145 LKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777888888774
No 100
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.68 E-value=1.3 Score=41.61 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPA 179 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~ 179 (235)
.+|+.+++.|..|.+.+++|...++.|.++++.+++.+..+|.
T Consensus 52 k~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~ 94 (428)
T 4b4t_K 52 KKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPL 94 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3444445555556666667777777778888888888766663
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.68 E-value=2.2 Score=31.39 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.+|+.......+++......+.+|..+.+....++..|+.+|
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444444444
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.67 E-value=5.4 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|+..+..|+.|+.+||-.+..+.-+++.|++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333444444333333333333333333
No 103
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.42 E-value=7.4 Score=30.55 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
......|......|...+++|.....+..+.+..|.+++.+|++++..
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455566666666666666666667777777777666544
No 104
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.26 E-value=1.4 Score=28.47 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
+||..+|++|-.++..|+.++..|+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555554444444433
No 105
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.15 E-value=3 Score=28.65 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.-+.+|..+...|..||..|+.+++.|++++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677777778888888888888777654
No 106
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=85.15 E-value=2.6 Score=30.98 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
|..++..|+....-+...|.+|...+-+.+.+...|+.++..|..+++.+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555544444444555555555555555555555555555555543
No 107
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.03 E-value=1.1 Score=28.57 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
||+.+|++|-.+|..|+.|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 444444444444444444333
No 108
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.68 E-value=2.2 Score=27.51 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk 147 (235)
++||+..|++|..++..|+.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555555555444444444433
No 109
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.67 E-value=8.1 Score=30.40 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
.++-.-|..|+.++..|...+..|+..+++|.+..+.|....
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 344455566666666666666666666666666666555543
No 110
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.60 E-value=4.6 Score=31.92 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+..|+..|..+++.|+.|+..
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Confidence 45667788888888888877654
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.50 E-value=4.9 Score=36.88 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+.+....+.+.|++|+.+|+.+++.+..++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 3444444445555555555555555555444
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.02 E-value=22 Score=32.49 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.++++.+..++++..+..+++++.|+.|++.++.+...+..+++...+.++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 3334444444455666677778888888888888888777777777766654
No 113
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.66 E-value=3.3 Score=28.33 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.++.+|++.|..|-..|.+|.... ..+.+||++|..-|+..
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c-------~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSC-------SEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHHc
Confidence 466788888888876665554444 44556888888877763
No 114
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=83.39 E-value=2.7 Score=38.41 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+.=++.|+.++.+|+..+....++|+.|+.....++...+.|+.++..|+..+.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666666666666666666666666666666666666666666655443
No 115
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.19 E-value=10 Score=28.43 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=14.2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 147 KCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 147 k~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+..+....|..|..|+++|+.+++.
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555566666665555
No 116
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=83.05 E-value=5.1 Score=34.47 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+++.-+-..++.++.+|..|..+...|..+.++|..+...+-.+|+.+|.+
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555555544444444444443
No 117
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.03 E-value=6.1 Score=34.04 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 126 RDEAQKLKVSNEKLLG 141 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ 141 (235)
+.++.+++.+...+..
T Consensus 59 ~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 118
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.01 E-value=10 Score=28.22 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.+++.|+.+.+.|..--..|..-+++|.+|...|...++.|+...+.+
T Consensus 24 qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 24 QAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554445555556666666666766676666655544
No 119
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.86 E-value=4 Score=30.02 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
.|.+|+.++.=++...+.|...+-.-..++..|+.+...|...+..++
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555555555555555555555444444
No 120
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.80 E-value=1.9 Score=27.48 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKI 143 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei 143 (235)
.||+.+|++|-.+|+.|+.++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 344444444444444443333
No 121
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=82.75 E-value=9.5 Score=28.37 Aligned_cols=35 Identities=37% Similarity=0.640 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|-..+.+|..|+.-|+.|+..++.-+.|++..++.
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666666665554
No 122
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=82.68 E-value=0.45 Score=41.66 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~ 173 (235)
.|+.|.++|+..|..
T Consensus 47 ~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 47 DLKKENKDLKESLDI 61 (255)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 445555566665554
No 123
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.49 E-value=5.8 Score=30.03 Aligned_cols=11 Identities=0% Similarity=0.232 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 026702 138 KLLGKINELKC 148 (235)
Q Consensus 138 ~L~~ei~~Lk~ 148 (235)
.|..+|..++.
T Consensus 36 ~l~~el~~le~ 46 (96)
T 3q8t_A 36 VVAENLEKVQA 46 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 124
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.31 E-value=2.5 Score=26.96 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.+|+.++++|-.++++|++|..+|+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555666666666666666555554
No 125
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=82.02 E-value=2.8 Score=31.18 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
|+.+...+..++++|+.++..|+.+++.|
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444555555555444443
No 126
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.87 E-value=13 Score=29.05 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
+-|..|+.+++.|+..+..|+..
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444443
No 127
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=81.86 E-value=5.3 Score=30.90 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
+.+|++| |..+++.|+...+.|+..+..++.+.+.+.++...+
T Consensus 86 ~~eA~~~---l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMES---IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 556667777776666666666666666655544443
No 128
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.83 E-value=5.4 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
+...+.|+.|||...+.|..|++.|
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555443
No 129
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=81.42 E-value=15 Score=28.47 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|+.|-+.+.+-+.++.--......|..-.+.-+..-.+-+.....|+.||..|.++|+..
T Consensus 27 LT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 27 LTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333344444543332222222222344667777888888877764
No 130
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=81.42 E-value=2.2 Score=34.09 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
-|..|++++.+|++++++|+.+
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 131
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=81.33 E-value=6.1 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
|.+|-.+|+.|......|..++..|+.+...
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555555544443
No 132
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.29 E-value=14 Score=27.30 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 138 KLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+|.++...|..+..+..+....|.+.+-.|+.+|+.+
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444555566666666777776654
No 133
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.13 E-value=8.5 Score=28.64 Aligned_cols=46 Identities=28% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
|-.+..+|..+...|.---++|-+..+||.-|+..|+.|++.+++-
T Consensus 14 Li~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 14 LILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444333343334556666667777777777777766653
No 134
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.12 E-value=8.5 Score=30.09 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
|.+|+..++.|+.+++.|+.....|...
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444444444444444444444433
No 135
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=80.96 E-value=9.4 Score=27.93 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
...++.|..+++.|...++.+..+...+++|-......+.+|+.+|
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445554444444444444444444444333444444443
No 136
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=80.68 E-value=11 Score=34.30 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHhHh
Q 026702 82 REKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEA-------QKLKVSN-EKLLGKINELKCEKNEL 153 (235)
Q Consensus 82 ~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~v-------q~Lk~~n-~~L~~ei~~Lk~EknEL 153 (235)
.-|.+++.|+..+..|.+.- | +-..|-.-+.+|+.+. +.+-... ..|..| ++++.+++++
T Consensus 21 ~lr~~~eql~~~i~~L~~~a-p----------~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~ 88 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQRA-P----------VWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEV 88 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC-h----------HHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45667788888888887776 3 3344555555566653 3443333 344444 7788888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 154 RDEKQRLKNEKENLER 169 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le~ 169 (235)
-..+..|..+|++|-+
T Consensus 89 a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 89 GARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8888888888888776
No 137
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.52 E-value=1.6 Score=34.44 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 91 NDRFMELASILDPGRP-PKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 91 Nd~F~~Lr~lLpP~~~-~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
+.+|.+|...+..... -+..|.. |.+.-+-|..|+.+++.++..+..|+..+.++
T Consensus 16 ~~K~eel~~~~~~~~~~l~~~k~E-i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 16 FTKTEELNREVATNSELVQSGKSE-ISELRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456667766622110 0111211 33334445555555555555555555544433
No 138
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.19 E-value=4.5 Score=29.64 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026702 155 DEKQRLKNEKENLERQV 171 (235)
Q Consensus 155 ~E~~~Lk~e~e~Le~ql 171 (235)
.|+..|+.+.+.|+++|
T Consensus 61 ~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 61 HQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 139
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.10 E-value=7.9 Score=37.18 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINEL------------------KCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~L------------------k~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-++|+.+++.|+.+...+..+|..+ +.+..+|+++...|+.+...++.+|..
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666665555555445444 344444444444444455555555544
No 140
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.04 E-value=8.8 Score=29.95 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKC-------EKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~-------EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
|-.+-=.|+...+.|+++.+.|+. .+.+|..|..+|+.|..+|.++-+.+..
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444667777777777777776 4556777777777777777777666543
No 141
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=80.03 E-value=8.1 Score=31.04 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
|..+++.|+..|..|+.+.++++.+
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~~~ 79 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQQD 79 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333
No 142
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=79.87 E-value=7.7 Score=28.92 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
++|.+|..+|..++.|++.|++||..|+.=.+..
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666554444333
No 143
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=79.85 E-value=2.4 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=11.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHH
Q 026702 148 CEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~Le~q 170 (235)
....||..+|+.|+.|++||..-
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344555555555555555543
No 144
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=79.70 E-value=7.3 Score=26.94 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
++++..+..|+.+...++.++....+|..+|-+=|..|..||.--..-|.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 46777788888888888888877778888888888888888776555554
No 145
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=79.68 E-value=16 Score=30.75 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 91 NDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLL 140 (235)
Q Consensus 91 Nd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~ 140 (235)
.+.+..|+..++-| +-+||.-+.. .||+=|+.+...+++......
T Consensus 54 ~~k~~qlre~~d~g--tt~~~i~~m~---~yI~llrErea~lEqkVaeq~ 98 (169)
T 3k29_A 54 MQKIRQLREQLDDG--TTSDAILKMK---AYIKVVAIQLSEEEEKVNKQK 98 (169)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35588899999544 4666655544 677778877777776554433
No 146
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=79.57 E-value=6.8 Score=25.92 Aligned_cols=35 Identities=34% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+++|+.-+|+|++.|..|..--+.|+-.+.||.=|
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefe 39 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFE 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Confidence 56666666777666665544333444444444433
No 147
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.54 E-value=9.9 Score=29.23 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~ 173 (235)
++..+|+.|+.+|..
T Consensus 65 kl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHTTSHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 444445555555444
No 148
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.43 E-value=7.4 Score=30.59 Aligned_cols=9 Identities=22% Similarity=0.180 Sum_probs=4.1
Q ss_pred HHHHHHhhc
Q 026702 93 RFMELASIL 101 (235)
Q Consensus 93 ~F~~Lr~lL 101 (235)
.+..|..-|
T Consensus 46 ~iq~L~~el 54 (131)
T 3tnu_A 46 TMQNLEIEL 54 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 149
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.24 E-value=3 Score=26.92 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.+|+.++++|..++.+|.+|..+|+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555555555554444443
No 150
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=79.15 E-value=3.1 Score=26.36 Aligned_cols=22 Identities=0% Similarity=0.045 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
+||+.+|++|-.+|..|+.|+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~ 24 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444444444433
No 151
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=79.04 E-value=2.1 Score=37.53 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.-||+--|.|++.-+.+....+ .+..+.++++.+.+.|+.|++.+++++++|++++..
T Consensus 123 ~~iLSalINF~~FRE~~~~~~~----e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 123 SRFLSGIINFIHFREACRETYM----EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577777888875555444322 222333444444445555555555555555554443
No 152
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.03 E-value=4.3 Score=30.64 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 134 VSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
++|++|..++..+..|++.|+.||..|+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666655554
No 153
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=78.98 E-value=3 Score=35.76 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
..|..|..++..|.++++....||+.|+.+...|+..
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666665555555555555555444444
No 154
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=78.66 E-value=14 Score=28.50 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDEAQKLKV-SNEKLLGK---INELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~-~n~~L~~e---i~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.++-+++++|..++++++. ...+++++ +..|+.|+..=++|...|+..++.+++
T Consensus 25 ~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 25 VDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776553 23333333 334444444433344444444444443
No 155
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.49 E-value=18 Score=32.95 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026702 157 KQRLKNEKENLERQVKA 173 (235)
Q Consensus 157 ~~~Lk~e~e~Le~qlk~ 173 (235)
...|..|+.+|+++|+.
T Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 156
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=78.32 E-value=4.3 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.+|+.++++|-.++.+|++|..+||
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455556555566666555555554
No 157
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=78.21 E-value=13 Score=27.95 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
-++.++.+.+..|..++.+.++.+....+|..|...|+.+++.|+
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666667777777777777777777777777754
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.12 E-value=15 Score=35.22 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
+-|..|-++-.++..+.+.|+.+.+.+.+++.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555443
No 159
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=78.11 E-value=5.3 Score=28.14 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
..++.+|++-|.+|-.++..|+.... ...+|++||..-|+..+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~-------e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCS-------EKEQEIERLNKLLRQHG 52 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcC
Confidence 34677888888888777766655544 45668888888888754
No 160
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=78.08 E-value=16 Score=33.86 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HhHhHHHHHHHHH
Q 026702 86 RRDRLNDRFMELASILD-PGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINEL-KCE-KNELRDEKQRLKN 162 (235)
Q Consensus 86 RRdklNd~F~~Lr~lLp-P~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L-k~E-knELr~E~~~Lk~ 162 (235)
|=+.+.++|.+|...+- |+--...+++.-|..-...|+.+-....+++...+.|.+-.+-+ -.+ +.+..+|...|+.
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34567888999988772 22112334444444444444433333344443333322111101 111 2456778889999
Q ss_pred HHHHHHHHHHHhcCCC
Q 026702 163 EKENLERQVKALSSQP 178 (235)
Q Consensus 163 e~e~Le~qlk~~~~~p 178 (235)
+++.|+.+|+.+-.|.
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999998866444
No 161
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.98 E-value=4.1 Score=39.91 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHh-------HhHHHHHHHHHHHHHHHH
Q 026702 138 KLLGKINELKCEKN-------ELRDEKQRLKNEKENLER 169 (235)
Q Consensus 138 ~L~~ei~~Lk~Ekn-------ELr~E~~~Lk~e~e~Le~ 169 (235)
.|+..|.+|+.+++ -||.-+..+..+|.|||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555553 455555556666667776
No 162
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=77.91 E-value=4.9 Score=36.75 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+.+++|.++..+|+..+.....++..|+.....++..+.+|+++|..
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666665554
No 163
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=77.87 E-value=14 Score=27.76 Aligned_cols=47 Identities=28% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
...+.|-+++..|+..+.+|..|+.+.......-|.|+..|++||..
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455666666666666777777766666666777777888888764
No 164
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=77.86 E-value=4.2 Score=25.31 Aligned_cols=20 Identities=35% Similarity=0.255 Sum_probs=7.4
Q ss_pred HHHHhHhHHHHHHHHHHHHH
Q 026702 147 KCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 147 k~EknELr~E~~~Lk~e~e~ 166 (235)
++|+.-|..|...||-|+.-
T Consensus 8 kqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 165
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.83 E-value=6.9 Score=36.86 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
|..+|+.++.-|+..+..-...|+.|+.-+.+++.+.++|...|
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554432211245555555555555555555444
No 166
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=77.80 E-value=12 Score=25.69 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.++++|......|-.++..|+.+.+.|+.+...-|.|-.|-.+.|.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566777777777777777777777777777777777666555543
No 167
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=77.67 E-value=7.4 Score=36.36 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhc-CCCCCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHhHhHH
Q 026702 86 RRDRLNDRFMELASIL-DPGRPPKM-------DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLG-K-INELKCEKNELRD 155 (235)
Q Consensus 86 RRdklNd~F~~Lr~lL-pP~~~~K~-------dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~-e-i~~Lk~EknELr~ 155 (235)
+-+.+.++|.+|...+ .|+--... ...+-|...++.+++|+...+.++...+-+.+ + -.+| +.++.+
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~---~~~a~~ 94 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPEL---EEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH---HHHHHH
Confidence 4456778888888765 22211122 22455555555555555555555443333321 1 1111 245677
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 026702 156 EKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 156 E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
|...|+.+++.|+.+|+.+-.|.
T Consensus 95 e~~~l~~~l~~le~~l~~lLlp~ 117 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLLLPK 117 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999865444
No 168
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.65 E-value=17 Score=34.26 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKIN----------ELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~----------~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-++|+.+++.|+.+...+..+|. +|+.+..+|+++...|+.+...++.++..
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556555555554444 44555555566666666666666666665
No 169
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.62 E-value=3.7 Score=26.03 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKL 139 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L 139 (235)
||+.+|++|-.++..|
T Consensus 4 QLEdKVEell~~~~~l 19 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHN 19 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHH
Confidence 3444443333333333
No 170
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=77.60 E-value=7.6 Score=29.26 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
+|..|...|..|+.|++.|+.++..|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 171
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.45 E-value=6.3 Score=36.57 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+-|+.|+++..+|+++++.++.++++|+.+..+...+..+|..++..|+..++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4567788999999999999999999998888777777788888888877777764
No 172
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.42 E-value=18 Score=34.70 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKI----------NELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei----------~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++|+.+++.|+.+...+..+| .+|+.+..+|+++...|+.+...++.+|..
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444 445555666666666666666666666655
No 173
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.36 E-value=3.8 Score=26.14 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
.||+.+|++|-.++..|+.|+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444444444444444433
No 174
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=77.35 E-value=1.9 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
.|+....+|+++...|+.||.
T Consensus 4 rlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 175
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.15 E-value=4.7 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.+|+.++++|-.++.+|.+|..+|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455566666666666555555443
No 176
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.97 E-value=7.3 Score=40.59 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 026702 81 CREKMRRDRLN 91 (235)
Q Consensus 81 ~~ERrRRdklN 91 (235)
..|..|.++++
T Consensus 782 ~LE~~r~~~l~ 792 (1184)
T 1i84_S 782 HLEEERDLKIT 792 (1184)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHH
Confidence 34544444433
No 177
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.90 E-value=10 Score=29.59 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
=+|+-|+...+.+++....+++|..|...+...+|-....|+.++..+
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666677777777777777777777777777654
No 178
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=76.84 E-value=11 Score=25.77 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~L 146 (235)
.+|+.|+.....+..||..|
T Consensus 18 ~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 18 TKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHH
Confidence 33444444444444444433
No 179
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=76.75 E-value=14 Score=32.27 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
..+...|..-....++.+++++..|.+..+++++|++.+++...+.|.....++.+-+++--
T Consensus 159 ~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~ 220 (228)
T 3q0x_A 159 PGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLL 220 (228)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 45677788888888899999999999999999999999999999999988888887777543
No 180
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.64 E-value=26 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=9.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk 172 (235)
.||.-|...|..+++.++.|++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 181
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=76.63 E-value=9.3 Score=28.77 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+|.+.|..++..|++|+..||.+.+.|..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666554
No 182
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=76.51 E-value=10 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 140 LGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 140 ~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
.+++..-+.++.+|+++..+.+..+..|+
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444443
No 183
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.43 E-value=8.6 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
++..|+.+.+++..|++.|+.|.+
T Consensus 2043 ~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2043 SIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333334444433333
No 184
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=76.34 E-value=0.97 Score=39.53 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
+.+..+..|+++.++|+++|..|+.+. .+..+|+.||.+|+..++
T Consensus 16 ~~~~~~~~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 16 DGVVDLKNTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLD 60 (255)
T ss_dssp ----------CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 334445556666666777666665443 444566667777766544
No 185
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=76.25 E-value=4.7 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk 147 (235)
+||+.+|++|-.+|..|+.|+..|+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555554444443
No 186
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=76.25 E-value=5.3 Score=25.46 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.+|+.++++|-.++.+|++|..+||
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455556555566666555555544
No 187
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=76.12 E-value=19 Score=26.28 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=4.7
Q ss_pred hHhHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNE 163 (235)
Q Consensus 151 nELr~E~~~Lk~e 163 (235)
.+|-+=|..|..|
T Consensus 57 q~LlnvK~~Ld~E 69 (84)
T 1gk4_A 57 QDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH
Confidence 3333333333333
No 188
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=75.79 E-value=5.7 Score=29.54 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 141 GKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
+|++.||..+.||.+.+.+|+.|..-|+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555544444443
No 189
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=75.77 E-value=13 Score=27.34 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
++.+++.|...++.|..++..|..+.+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555543
No 190
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=75.73 E-value=26 Score=32.55 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGK--------INELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~e--------i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-++|+.+++.|+.+...+..+ ..+|+.+..+|+++...|+.+...++.+|..
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555444433 3456666667777777777777777777765
No 191
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=75.66 E-value=19 Score=26.49 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+.+++..+..|+.+...++.++.....|..+|-+=|..|..||.--..-|
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444555555555555555555555555666666666666665444333
No 192
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.61 E-value=18 Score=27.36 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 026702 163 EKENLER 169 (235)
Q Consensus 163 e~e~Le~ 169 (235)
++..|..
T Consensus 87 ev~~L~R 93 (101)
T 3u1c_A 87 EVASLNR 93 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 193
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.26 E-value=6.5 Score=36.72 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
-+.+|++++++|+++++.++.++++++.+..+...+...|..++..|+..++..
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788888888888888888888888888777777778888888877766663
No 194
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=75.12 E-value=11 Score=30.40 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh
Q 026702 89 RLNDRFMELASI 100 (235)
Q Consensus 89 klNd~F~~Lr~l 100 (235)
+|+||+.+|+..
T Consensus 6 ~mkDRl~eL~~~ 17 (180)
T 1s94_A 6 RTKDRLAALKAA 17 (180)
T ss_dssp ------------
T ss_pred chhHHHHHHhcc
Confidence 456777777764
No 195
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=75.08 E-value=11 Score=32.80 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=34.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDE----AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 120 ~yIk~Lr~~----vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
.|-+.|=++ +..--++|+.|..+|..|..|++.|++||..|+.=.+.++..
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666433 233334778888888888888888888888777666665554
No 196
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=74.94 E-value=2 Score=37.67 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=36.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+-+|..+..+.+.-..++..+++.|..+|..++.+++.|+.+..+...+..-.+.....|...+..
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~ 201 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSK 201 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 347777777777777777777777777777777777777777666555544444555555555555
No 197
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.85 E-value=4.3 Score=25.90 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
+||...|++|-.+|..|+.++..|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555555444444444444333
No 198
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=74.78 E-value=11 Score=28.19 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
|.+|..--++|+.++..++.++..|+++++.|
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555554433
No 199
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=74.70 E-value=14 Score=34.74 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKN----------ELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn----------ELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
++.|.+|-++-.++..+.+.|+.+.+.+.+++. +|..+...|+.++..|+.+++.+..
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777777777766666654 3455555666666666666666443
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.56 E-value=4.2 Score=38.10 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+|..++++|+.+++-|+.+.++++.+.+.++.|...++.|+++|+.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444445555555555555555666666666666666666666654
No 201
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=74.55 E-value=4.1 Score=26.00 Aligned_cols=22 Identities=9% Similarity=0.308 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
+||+.+|++|-.++..|+.|+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHH
Confidence 3444444444444444444433
No 202
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=74.55 E-value=6.5 Score=33.45 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
+|-.|-..++.|+.+|..|+.+...|+.|-|+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544444444444443
No 203
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.38 E-value=18 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=14.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 146 LKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..++..|...++.|..++++.+.+|..
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566655555544
No 204
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=74.13 E-value=21 Score=27.42 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=13.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 151 NELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+..|+..|..++..|+.|+..+
T Consensus 64 Ekl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 64 EKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665443
No 205
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.03 E-value=15 Score=35.29 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HhHHHHHHHHHHHHHHHHHHHHh
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKN----------ELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn----------ELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+-|..|-++-.++..+.+.|+.+.+.+.+++. +|..|...|+.++..|+.+++.+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554432 23334444555555555555443
No 206
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.87 E-value=14 Score=27.43 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNE 137 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~ 137 (235)
..+..+..++..|+....
T Consensus 14 eEm~~~eeel~~lke~l~ 31 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLA 31 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 207
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=73.86 E-value=13 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.+++..+..|+.+...++.++.....|..+|-+=|..|..||.--..-|.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666665566666666666666666655554444
No 208
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=73.62 E-value=5.1 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 138 KLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|.+|..+|+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444455555555555554444443
No 209
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=73.55 E-value=14 Score=34.25 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~ 138 (235)
..|++-|..|..+- -.-....-+..+|..|-....+++..-+.|+.....
T Consensus 44 ~~l~~ff~alq~la-~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~ 93 (463)
T 2d4y_A 44 GSLQSFFTSLQTLV-SNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQ 93 (463)
T ss_dssp HHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888887 211234567778888866666665554444443333
No 210
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=71.82 E-value=5.8 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 138 KLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
+|+.++++|-.++.+|.+|..+||
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555555555555554
No 211
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=71.78 E-value=15 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhHHH---HHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCE-KNELRDE---KQRLKNEKENLERQVK 172 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E-knELr~E---~~~Lk~e~e~Le~qlk 172 (235)
.+.++|+.-++.|++.+..|.+-|.-.+.. ..|+... ...|+.+++.|+.++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777777777777777777665542221 1223222 3466666667666654
No 212
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.71 E-value=9.8 Score=28.42 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
++.+++.++++|+.+...++++++.++..+..+..
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555666666666667777766666544
No 213
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=71.66 E-value=4.3 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
.+|+.++++|-.++.+|++|..+||
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3455556556666666666555554
No 214
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=71.60 E-value=6.2 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026702 134 VSNEKLLGKINELKCEKN 151 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~Ekn 151 (235)
..|...+.+|++||++.+
T Consensus 7 rKn~a~qqDIddlkrQN~ 24 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNA 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHH
Confidence 344444444444444333
No 215
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.37 E-value=12 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
-+.+..|..+.+.++...+.|..+++++..+.+++
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444444444444433
No 216
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.24 E-value=2.1 Score=31.85 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
+.|++.|++|....++|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554
No 217
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=71.21 E-value=39 Score=27.72 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 108 KMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINEL-------------KCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L-------------k~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
...|..++..--.-|.+|..+.+.|+-+..++..+++.- ..=...+..|++.+...+..|.+|++.+
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777777777666655544320 1111345567777888888888887764
No 218
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=71.16 E-value=7.5 Score=33.06 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
.||.-+++-+..|+.+++.|.++|+.|+.|-.+...
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777777777776554443
No 219
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.16 E-value=16 Score=31.34 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
.-+..|..+++....+++.|++++..|+.......+.+
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33445555555555555555555555555554444433
No 220
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=70.92 E-value=28 Score=29.13 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
...|+.|+..-++|.+..........+|.++.|.|+-|...|...+++.-.-|+..++
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv 159 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGA 159 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445556666677777777777778889999999999999999988887777776554
No 221
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=70.82 E-value=21 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
+|...++.|..+++.|...++.+..+...++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554444444443333
No 222
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=70.68 E-value=3.7 Score=29.90 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=10.4
Q ss_pred HHhHhHHHHHHHHHHHHHHHHH
Q 026702 149 EKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~Le~q 170 (235)
+..+|+.++..||-++.++-.+
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3444455555555555444433
No 223
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.56 E-value=27 Score=25.48 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=9.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
.+...+..|..+...++.++++
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 224
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=70.36 E-value=14 Score=29.37 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
+.+|++| |..+++.|+...+.|...+..++...+.++....
T Consensus 96 ~~eA~~~---l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 96 IDEAISF---LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777 4566666666666666666555555555444333
No 225
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=70.31 E-value=22 Score=28.08 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-|++..+.|++++++|+.....|.......+..+.+.+.++..
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444445555555454544444444444444444444
No 226
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.12 E-value=27 Score=25.43 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
.+..-++.++.+.+.|+..+..|+..+.+-+.+-+.++.|...+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888877777776666665443
No 227
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=69.70 E-value=28 Score=25.23 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|..+.+.+......|+.++..++.+......|-+.|-.=|-.|+.++...
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777777776677778888888888888763
No 228
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=69.62 E-value=13 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Q 026702 152 ELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+.|...|+..+..|+.+|..+
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666543
No 229
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=69.50 E-value=6.1 Score=25.21 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 026702 163 EKENLERQV 171 (235)
Q Consensus 163 e~e~Le~ql 171 (235)
+...|+.|+
T Consensus 22 QN~~Le~Qi 30 (34)
T 1a93_B 22 QNALLEQQV 30 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 230
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.45 E-value=14 Score=24.54 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
..|+.....|+....+|...++-|+.||+.|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444444444444444444
No 231
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=69.17 E-value=9.9 Score=23.60 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
|++++..|+++...|.-||..|
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 232
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=69.10 E-value=5.5 Score=26.88 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=17.2
Q ss_pred HHHHHHH-hHhHHHHHHHHHHH-HHHHHHHHH
Q 026702 144 NELKCEK-NELRDEKQRLKNEK-ENLERQVKA 173 (235)
Q Consensus 144 ~~Lk~Ek-nELr~E~~~Lk~e~-e~Le~qlk~ 173 (235)
+.+|+|+ .|+|.|.+++|.|| +-+.++|..
T Consensus 10 e~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445554 56677777776664 345555544
No 233
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.04 E-value=70 Score=30.57 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKL 132 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~L 132 (235)
.|-+||+.|+......
T Consensus 118 ~~~~~i~~Iq~slk~~ 133 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKT 133 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4555655555444333
No 234
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.80 E-value=38 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~ 138 (235)
|.+||.++..+..++..
T Consensus 22 I~~LR~qid~~~~e~a~ 38 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKAR 38 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 235
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=68.73 E-value=26 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.|+-||+++..-+.+...|++.++--.+-..-|.||.-.|-.|..-|++.|.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 4455666655555555666555443333334466666666666666666554
No 236
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=68.68 E-value=11 Score=27.86 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e 163 (235)
-|.+|+..++---+..+.|..|+-.|..|.|-|++..+.|++|
T Consensus 33 eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 33 EIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 3444444443333345667777777788888888777777654
No 237
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=68.47 E-value=18 Score=33.70 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEK--------NELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek--------nELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
++-|..|-++-.++..+.+.|+.+.+.+.+++ .+|..+...|+.++..|+.+++.+..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888888777776654 34566666677777777777766543
No 238
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=68.46 E-value=12 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDE-------AQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 116 ~dAI~yIk~Lr~~-------vq~Lk~~n~~L~~ei~~Lk 147 (235)
+++=+-+..|++. |+.|+.++..-++||..|.
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544 4444444444444444443
No 239
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=68.40 E-value=32 Score=25.68 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=11.3
Q ss_pred hHhHHHHHHHHHHHHH-HHHHHHH
Q 026702 151 NELRDEKQRLKNEKEN-LERQVKA 173 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~-Le~qlk~ 173 (235)
..+.......|.++.+ |+.+|+.
T Consensus 68 ~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 68 ATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555 5555554
No 240
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=68.24 E-value=7.8 Score=34.80 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 128 EAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
+++.|+.+++.|++|+++|+.+++.++..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55556666666666666665555544443
No 241
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=68.01 E-value=46 Score=31.39 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 91 NDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 91 Nd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
.+.+..|+....|...++ -.-+..+++|-+.+.+++.+++..+......|.+|+...+-.+...+.|+..+
T Consensus 58 ~~~v~~ik~~~~~~q~~~---~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 58 KQLIKAIQLTYNPDESSK---PNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHHCTTTCCC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccCCC---CcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666664432222 22356677887877777888877776666667766666554444444444333
No 242
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.00 E-value=17 Score=42.30 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
|-.-+++++++++++++..+.|+++.+++..|+..|++|
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555554
No 243
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=67.98 E-value=7.8 Score=24.68 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 138 KLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
+|..++++|-.++.+|.+|..+|+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555555555444443
No 244
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.89 E-value=3.7 Score=27.96 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKI 143 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei 143 (235)
.||.+|+.+++.|+..+..|+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888887776543
No 245
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=67.84 E-value=34 Score=26.92 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNE 137 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~ 137 (235)
+.|+.+..+|+.+++
T Consensus 9 ~~lq~~~~ql~~qL~ 23 (112)
T 1x79_B 9 KKLQLMLRQANDQLE 23 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 246
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=67.81 E-value=18 Score=25.08 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
.++|..+++.||.|..-||.|...=-.++.+||.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 35566666677777766777655444455555543
No 247
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=67.67 E-value=36 Score=25.45 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026702 90 LNDRFMELA 98 (235)
Q Consensus 90 lNd~F~~Lr 98 (235)
|...+..|+
T Consensus 7 iKkKm~~lk 15 (101)
T 3u59_A 7 IKKKMQMLK 15 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 248
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=67.09 E-value=18 Score=33.69 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINEL----------KCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~L----------k~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++|+.+++.|+.+...+..+|..+ +.+..+|+++...|+.+...++.++..
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444444332 233333444444444444444444444
No 249
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=66.95 E-value=13 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk 147 (235)
+.+|++++.+.+.+|-.|++++..|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566666666666666555554443
No 250
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=66.77 E-value=11 Score=29.81 Aligned_cols=36 Identities=3% Similarity=0.091 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 138 KLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.|.+.+.+|..++.+|+.-...|...++.+++.++.
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444445555555555555555555555554444
No 251
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=66.61 E-value=0.17 Score=39.89 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
++.+|..++..|..+...|+.|...|..++.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~ 89 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELD 89 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 252
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.40 E-value=21 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=13.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.+..++..|......+..+.+.|+.+|..+
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444445555555543
No 253
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.20 E-value=6 Score=37.15 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026702 132 LKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQPA 179 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~ 179 (235)
|+.....|+.+++.|+.|...+..|+..|+.++..++.+++.....|.
T Consensus 30 l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~ 77 (434)
T 4b4t_M 30 LQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPY 77 (434)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 333334455556666666666666666666677777777776666553
No 254
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=66.18 E-value=38 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
|++++...+.+...|.+++.+|+.....|..|..-.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666666666666665433
No 255
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=65.68 E-value=16 Score=23.59 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
.++|..+.+.-+++|..||.|..+|
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444444444444444444444443
No 256
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=65.59 E-value=13 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
+.+.+.++..|..++..|...+..|.+|++
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666654
No 257
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=65.21 E-value=23 Score=32.99 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 026702 84 KMRRDRLNDRFMELASIL 101 (235)
Q Consensus 84 RrRRdklNd~F~~Lr~lL 101 (235)
...-+.+.++|.+|...+
T Consensus 24 ~~~l~~~~~r~~el~~~~ 41 (365)
T 1gqe_A 24 YLDYDAKKERLEEVNAEL 41 (365)
T ss_dssp HTTHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHh
Confidence 344566777888887765
No 258
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.03 E-value=30 Score=33.45 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 026702 91 NDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKV----SNEKLLGKINELKCEK 150 (235)
Q Consensus 91 Nd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~----~n~~L~~ei~~Lk~Ek 150 (235)
+.++.+|+..|......-.+=-+......+++++-+++++..+. ..+.|+..|.+|+.-+
T Consensus 64 ~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 64 SQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555221111223333444445555544444443332 1233444444444444
No 259
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.76 E-value=15 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek 150 (235)
|...+.++..+......|..++..++.++
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333333333333333333
No 260
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=64.68 E-value=17 Score=30.53 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 133 KVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 133 k~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
++..+.|......|+.+++.|..+.+.|..+++.|+.
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444
No 261
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=64.37 E-value=17 Score=31.46 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+-.+.+.||+.+.-..-.+...|+..+.+|.+|+++|+...
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l 67 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRF 67 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33455555555544444444444444444444444444433
No 262
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=64.29 E-value=39 Score=25.01 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
-..+|+++.+++.-. +. -..+|..|| -|+..-.+|.+.-++.......+.+++..|...++
T Consensus 32 A~~vd~~~~~i~~~~-~~--~~~~r~~vm-aALnladel~~~~~~~~~~~~~~~~~i~~L~~~le 92 (104)
T 1t3u_A 32 ARYLDGKMREIRSSG-KV--IGADRVAVM-AALNITHDLLHRKERLDQESSSTRERVRELLDRVD 92 (104)
T ss_dssp HHHHHHHHHHHHTTT-CS--CSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CC--CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999987 42 244565544 35555555544444433334444444444444443
No 263
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=64.19 E-value=6.4 Score=31.33 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSN----EKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n----~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
.|++|+.+.+..+.++...+ +.|.+.++.|..|..+|+.|...|+.++
T Consensus 4 ~A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 4 AAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp GGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666655555432 2333444444444444444444444443
No 264
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=64.08 E-value=22 Score=29.89 Aligned_cols=48 Identities=6% Similarity=0.108 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+..-+.|.....+|+.++..|+.++++|..+...|+....+++.-.+.
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~ 95 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666777777778888888888888888888877776655433
No 265
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.91 E-value=5.4 Score=27.44 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=6.7
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLER 169 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~ 169 (235)
..|..|+..|+.++++|+.
T Consensus 37 ~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444443
No 266
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=63.89 E-value=20 Score=31.03 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+.+|+|+.+..+.-.+..+|+...++|+.|+..|+..+++|+-
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 3456677777666677777777777777777777766666653
No 267
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.79 E-value=12 Score=30.44 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 157 KQRLKNEKENLERQVK 172 (235)
Q Consensus 157 ~~~Lk~e~e~Le~qlk 172 (235)
...++...+.|+.|++
T Consensus 98 ~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 268
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.36 E-value=36 Score=28.37 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 123 TQLRDEAQKLKVSNEKLL-------GKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~-------~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
..|+.++...+.++..|. .+|+.|..|+.+||.+... +.-+.+.++..-.+|+
T Consensus 88 ~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~---~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 88 SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE---QRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCC
Confidence 334444444444444443 2355566666666554333 3333445554434443
No 269
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=63.20 E-value=18 Score=26.47 Aligned_cols=38 Identities=8% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
+--+.+..|....+.++...+.|..+++++..+.++++
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444444444444443
No 270
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.72 E-value=27 Score=25.89 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~L 160 (235)
+..-|+.|+.+.+.|+..+..|+..+.+-+.+-+.++.|...+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888877777776666666665433
No 271
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=62.20 E-value=21 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E 156 (235)
..+++|+.+++.|++++...|.+...++++
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444444
No 272
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=62.06 E-value=68 Score=26.63 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHhHHHH-H
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK--------INELKCEKNELRDEK-Q 158 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e--------i~~Lk~EknELr~E~-~ 158 (235)
+.|+..+.+|+.-|.|-. .-=+.-|..++-.|-.+|++.++.|+..+....++ +++++....-+-+|. .
T Consensus 69 ~~l~~~~~~l~~qL~P~~--~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~ 146 (191)
T 1nfn_A 69 KELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 146 (191)
T ss_dssp HHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566777887886632 21234456666666666777777777665544333 234444444433442 4
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~ 173 (235)
++....+.|+.+|.-
T Consensus 147 kl~~~~eeLr~~l~P 161 (191)
T 1nfn_A 147 RLLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 666777777777664
No 273
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=61.87 E-value=16 Score=23.27 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVS 135 (235)
Q Consensus 124 ~Lr~~vq~Lk~~ 135 (235)
||..+|++|-.+
T Consensus 5 QledKvEel~~~ 16 (34)
T 2r2v_A 5 QVADKLEEVASK 16 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 274
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=61.46 E-value=20 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e 163 (235)
++..||.++=.|+||...+...
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 4666666666666666544433
No 275
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=61.23 E-value=59 Score=28.52 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 026702 83 EKMRRDRLNDRFMELASIL 101 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~lL 101 (235)
+.+|=+.+-.++..+...|
T Consensus 61 ~~~~~~~~~~k~~~~~~~L 79 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVV 79 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 3333344444455555555
No 276
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=60.45 E-value=20 Score=33.35 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKN----------ELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn----------ELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
++-|..|-++-.++..+.+.|+.+.+.+.+++. +|..+...|+.++..|+.+++.+..
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888888888765 3455666777788888887777544
No 277
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.44 E-value=22 Score=33.47 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhc
Q 026702 90 LNDRFMELASIL 101 (235)
Q Consensus 90 lNd~F~~Lr~lL 101 (235)
+..+|.+|+..|
T Consensus 65 ~~~rIe~L~~~L 76 (390)
T 1deq_A 65 FTSRINKLRDSL 76 (390)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 278
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.37 E-value=35 Score=22.77 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.+|+.+...|+.|.+.|+...---.|=..-|..|+..|...
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 445555555665555555443222222233444444444433
No 279
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.03 E-value=39 Score=31.70 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 132 LKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 132 Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+.++..+|+..+.....++.+|+.....++..++.|++++..+
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444455566777777777888888888877664
No 280
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=59.97 E-value=39 Score=32.38 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHH-HhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 147 KCE-KNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 147 k~E-knELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+ ..+|+++...|+.+...++.++..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 555666666666666667777665
No 281
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=59.49 E-value=74 Score=28.93 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
.++..+...|+=.-.+|.++++-|++.|..+..
T Consensus 362 ~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 362 QEALQGLQVALCSQAKLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC
Confidence 455566666777777888888888888888764
No 282
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.33 E-value=51 Score=25.57 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=23.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
+|.++|...+. .+.++..|+.++..|+..+.+...-..++..+++.|+.
T Consensus 5 e~~~~~~~~~~----~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 5 ERRALLERCLK----GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 44555544443 23344555555555554444444444455555555543
No 283
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=59.20 E-value=40 Score=25.80 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.+.+.-|+...+.|...++.|.....++++....+..++..+.++
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555666666666666666666666666666666666655544
No 284
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=59.07 E-value=16 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHH
Q 026702 138 KLLGKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 138 ~L~~ei~~Lk~EknELr~E~~~L 160 (235)
+|..++++|-.++.+|.+|..+|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555555555555555554444
No 285
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=58.86 E-value=17 Score=23.47 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 026702 134 VSNEKLLGKIN 144 (235)
Q Consensus 134 ~~n~~L~~ei~ 144 (235)
++|++|..+|.
T Consensus 7 ~ENekLhk~ie 17 (37)
T 1t6f_A 7 KENEKLHKEIE 17 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 286
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=58.79 E-value=63 Score=25.21 Aligned_cols=82 Identities=10% Similarity=0.218 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchhhhH--HHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHhHHHHHH
Q 026702 86 RRDRLNDRFMELASILDPGRPPKMDKTVLL--ADAVQ-MVTQLRDEAQKLKVSNEKLL---GKINELKCEKNELRDEKQR 159 (235)
Q Consensus 86 RRdklNd~F~~Lr~lLpP~~~~K~dKasIL--~dAI~-yIk~Lr~~vq~Lk~~n~~L~---~ei~~Lk~EknELr~E~~~ 159 (235)
|-++|+..+..+...+ -.+.++|- +.||. .-+.|++...+|.....+.. +|++.+..+..+|-..+-.
T Consensus 21 ~~~ri~~aig~~d~ri------~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh 94 (114)
T 2xzr_A 21 EIARIKKLIGAIDGRV------TRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYH 94 (114)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhHHH------HhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4455666666665555 22444554 34454 45566665555544433333 3455566666777777778
Q ss_pred HHHHHHHHHHHHHH
Q 026702 160 LKNEKENLERQVKA 173 (235)
Q Consensus 160 Lk~e~e~Le~qlk~ 173 (235)
|..|+.+|...++.
T Consensus 95 ~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 95 IENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887775
No 287
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=58.76 E-value=36 Score=29.52 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
|.+|+.--++|+.++..|+.++..|+++
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeE 137 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKE 137 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 288
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=58.75 E-value=6.7 Score=30.14 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026702 152 ELRDEKQRLKNEKENLERQVKALSSQPA 179 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~~~~~p~ 179 (235)
+|+++...|+.++++++.+++.+..+|.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~P~ 38 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSPPL 38 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444555555566666777777777774
No 289
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=58.37 E-value=43 Score=24.95 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=27.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHhHhHHHHHH-HHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKL--LG-KINELKCEKNELRDEKQR-LKNEKENL 167 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L--~~-ei~~Lk~EknELr~E~~~-Lk~e~e~L 167 (235)
.|-..|.++=+.+.+...-+++++-+...+ .. .-..+...+.+.+.+... ||.+..+|
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555444444 21 122334444445555555 55555554
No 290
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=58.00 E-value=13 Score=28.39 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=13.7
Q ss_pred HHHHHH-HHHHHHhHhHHHHHHHHH--HHHHHHHHHH
Q 026702 139 LLGKIN-ELKCEKNELRDEKQRLKN--EKENLERQVK 172 (235)
Q Consensus 139 L~~ei~-~Lk~EknELr~E~~~Lk~--e~e~Le~qlk 172 (235)
|+..++ +|....+.|.++...|-. ++|||-.++.
T Consensus 38 LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~ 74 (97)
T 1hs7_A 38 LRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFK 74 (97)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 344444 333334444443332222 4555544443
No 291
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=57.53 E-value=33 Score=31.20 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
+|+..|++++++|+++.++++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKD 269 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777776666666543
No 292
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=57.44 E-value=3.6 Score=32.19 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..|+.++..|..+++.|..|+..|+.|++.+..+++.
T Consensus 61 ~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~ 97 (107)
T 3a5t_A 61 EELEKQKAELQQEVEKLASENASMKLELDALRSKYEA 97 (107)
T ss_dssp HHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454555555555555555555555555555544443
No 293
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.43 E-value=10 Score=35.38 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 128 EAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 128 ~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
++++++.....+.+.++.|+.+.++|.++ ...++.+++.+-.+|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~-------~~~~~~e~~~l~~~~ 69 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDK-------VRFIKDELRLLQEPG 69 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCC
Confidence 44445544444445555555555555444 444444555554444
No 294
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=57.27 E-value=49 Score=29.08 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCE-KNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E-knELr~E~~~Lk~e~e~Le~qlk 172 (235)
+.+.+|+.+++.|+.+.+.+..+++.+..+ ...|..=...+..++++.+....
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555677788888888877777777776666 45566656666666666655433
No 295
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=57.11 E-value=20 Score=30.86 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 123 TQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
..|..++..|+.++..|......+.++...+|.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 296
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=56.94 E-value=42 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|+.....|..|++.+..+|..
T Consensus 37 L~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344444555555555555554
No 297
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=56.55 E-value=50 Score=27.16 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 026702 116 ADAVQMVTQ 124 (235)
Q Consensus 116 ~dAI~yIk~ 124 (235)
..+++|+.+
T Consensus 20 ~~~~~~~~~ 28 (146)
T 2xnx_M 20 ELAIDQASR 28 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 298
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=56.49 E-value=25 Score=26.51 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
.|-..|.++=..|.+.+.-+++++-+...+.. ..+..+.......|.++++|+.+|
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~------s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPL------TFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444444433332221 122334444445555566665554
No 299
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=56.35 E-value=11 Score=33.75 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHhHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDE 156 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E 156 (235)
+.+.|+++++.|+.|+.+|+.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 300
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=55.96 E-value=41 Score=23.95 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 140 LGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 140 ~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.+|..|-+-.+.|.+|...|+.++.+|+.+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3345555555566666666666666555543
No 301
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=55.79 E-value=13 Score=27.41 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 113 VLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK-------------NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 113 sIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek-------------nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.-+.+|+.||+.++.+-+.--....+..+-++..+.+. .|+-++...|-..-..|=+.+..
T Consensus 5 ~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~ 78 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQ 78 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45789999999999886653344455545455555543 34555555555554445444444
No 302
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.74 E-value=13 Score=28.45 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=16.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+.|+.+.++|+++...|+.|+++|++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555666666666666666666665
No 303
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.56 E-value=55 Score=25.46 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhc
Q 026702 89 RLNDRFMELASIL 101 (235)
Q Consensus 89 klNd~F~~Lr~lL 101 (235)
+||.....|..+|
T Consensus 25 ~In~~vs~l~r~v 37 (130)
T 2dnx_A 25 RISQATAQIKNLM 37 (130)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555566666555
No 304
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.50 E-value=5.7 Score=23.88 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 026702 131 KLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
.|+-+|+.|+++|..|++.+..
T Consensus 4 alefendaleqkiaalkqkias 25 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHH
Confidence 4555666666666665555443
No 305
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=55.32 E-value=45 Score=25.07 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
+|+.+++.|+.+...|..++..++.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566665555555555555544
No 306
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.31 E-value=57 Score=23.69 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLER 169 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~ 169 (235)
+..+...|..+++.++.
T Consensus 77 i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 77 LQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 307
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=55.28 E-value=61 Score=30.98 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=11.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHh
Q 026702 154 RDE-KQRLKNEKENLERQVKAL 174 (235)
Q Consensus 154 r~E-~~~Lk~e~e~Le~qlk~~ 174 (235)
..+ ...|+.++..|+.++..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~ 130 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQL 130 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 444 455555555555555553
No 308
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=55.18 E-value=55 Score=27.19 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 158 QRLKNEKENLERQVKA 173 (235)
Q Consensus 158 ~~Lk~e~e~Le~qlk~ 173 (235)
..|-.|+..|++++..
T Consensus 116 ~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 116 NAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566666665554
No 309
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.14 E-value=58 Score=25.24 Aligned_cols=29 Identities=28% Similarity=0.198 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
|-+..-+.+.+++.|++++.+|+...++.
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666655443
No 310
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=55.00 E-value=16 Score=28.42 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELK 147 (235)
Q Consensus 135 ~n~~L~~ei~~Lk 147 (235)
+++.|++.+..|+
T Consensus 97 ~~~~L~~~i~~Le 109 (117)
T 3kin_B 97 KNKALKSVIQHLE 109 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 311
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=54.21 E-value=67 Score=24.13 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
+..|+.+...++.++.....|..+|-+=|..|..||.
T Consensus 46 i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 46 LTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444443
No 312
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=54.03 E-value=40 Score=23.55 Aligned_cols=22 Identities=36% Similarity=0.518 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLG 141 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ 141 (235)
+-|-.|+.+|+.|++++..|..
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777666543
No 313
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=53.92 E-value=41 Score=28.34 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
++..|-+-|..|+.++..|+.++....++.+.+..+.+.
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888777777776666666544
No 314
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=53.00 E-value=31 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
+..|+.++..|+.+-..|.+.|+.+......|.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555555444443
No 315
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.72 E-value=60 Score=24.85 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLG 141 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ 141 (235)
+|..-|..|...| . ...++|+.++.+|+.+...|+.
T Consensus 33 ELs~tfarLc~~V---d--------------~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 33 EMATTFARLCQQV---D--------------MTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp --CCHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666 1 5566677777777766655543
No 316
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=52.69 E-value=93 Score=25.34 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHhHHHH-H
Q 026702 88 DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGK--------INELKCEKNELRDEK-Q 158 (235)
Q Consensus 88 dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e--------i~~Lk~EknELr~E~-~ 158 (235)
+.++..+..|+.-|.|-. ..=...+..++-..=..|+..++.++.......++ +++++.....+-+|. .
T Consensus 69 d~l~~~~~~l~~~L~P~t--~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~ 146 (165)
T 1gs9_A 69 KELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 146 (165)
T ss_dssp HHHHHHHHHHTTSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777788886621 11123333333333333444455554443332222 335555555544443 4
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQVKA 173 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~ 173 (235)
.+..+.+.|+.+|.-
T Consensus 147 ~~~~~~eeLr~kL~p 161 (165)
T 1gs9_A 147 RLLRDADDLQKRLAV 161 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhh
Confidence 555666666666643
No 317
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=52.64 E-value=46 Score=32.54 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchh-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKT-VLLADAVQMVTQLRDEAQK-LKVSNEKLLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKa-sIL~dAI~yIk~Lr~~vq~-Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
.+.+.+..|...+.. .++ .-|..+..+.+++...+.. ++.....|..++.+++.+...++.+...|+...
T Consensus 311 Gi~~L~~~L~~~l~~------~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~ 382 (695)
T 2j69_A 311 GFPKFMDSLNTFLTR------ERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIR 382 (695)
T ss_dssp SHHHHHHHHHHHHHH------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH------hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666611 122 2233344554444443222 233333343444444444444444433333333
No 318
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.39 E-value=43 Score=22.24 Aligned_cols=10 Identities=50% Similarity=0.581 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 026702 125 LRDEAQKLKV 134 (235)
Q Consensus 125 Lr~~vq~Lk~ 134 (235)
|+.++|.|++
T Consensus 5 lkselqalkk 14 (48)
T 1g6u_A 5 LKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 319
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=52.25 E-value=1.2e+02 Score=26.52 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhcCC
Q 026702 87 RDRLNDRFMELASILDP 103 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP 103 (235)
|.+|+.-+.+|+.-|.|
T Consensus 17 r~~l~~~~eel~~~L~P 33 (273)
T 3s84_A 17 KEEIGKELEELRARLLP 33 (273)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45667777888887766
No 320
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.20 E-value=27 Score=22.70 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=3.8
Q ss_pred HHHhHhHHHH
Q 026702 148 CEKNELRDEK 157 (235)
Q Consensus 148 ~EknELr~E~ 157 (235)
.+...|++|+
T Consensus 22 ~kl~~LkeEK 31 (38)
T 2l5g_A 22 EKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 321
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=51.83 E-value=95 Score=25.18 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=7.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~ql 171 (235)
++.+.-..++++-+.+|...+
T Consensus 124 eeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 124 EEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 322
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=51.28 E-value=20 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk 147 (235)
.-.++..|+.+|..|++|.+.|.
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 323
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.21 E-value=17 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
|++||.++..+..++..|.-++..++...+.++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998888887777766655443
No 324
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=51.21 E-value=30 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
-..+|+.||+.++.+-+.--.......+-++..
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y 41 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHTY 41 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 478999999999988654233334433333333
No 325
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=50.88 E-value=19 Score=22.07 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk 147 (235)
|..-+..|+.+|.+|..++++|-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443
No 326
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=50.65 E-value=38 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~ 138 (235)
.+-.++|+.++.+|+.++..
T Consensus 22 a~~~~~lk~E~~~lk~E~~s 41 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNS 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666665543
No 327
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.58 E-value=84 Score=25.52 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
.+-++.++..+....|.+.|..|..|+++-++
T Consensus 69 ~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~ 100 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEYNGRLAAELEDRRQ 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444333
No 328
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=50.49 E-value=50 Score=27.15 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026702 137 EKLLGKINELKCEKNELRDEKQRLKN 162 (235)
Q Consensus 137 ~~L~~ei~~Lk~EknELr~E~~~Lk~ 162 (235)
..|..++..|+++...|.++++.+.+
T Consensus 90 a~l~~~~~~LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 90 DQLSSEKEQLTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTTC--
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHH
Confidence 33333333344444334333333333
No 329
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.61 E-value=12 Score=22.44 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELK 147 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk 147 (235)
+|++.|..|.+||..|.
T Consensus 4 rlkqknarlkqeiaale 20 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 44444444444443333
No 330
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=48.98 E-value=7.9 Score=26.54 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKI 143 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei 143 (235)
+.+|+..|..|+..|
T Consensus 26 varlendnanlekdi 40 (56)
T 3he4_A 26 VARLENDNANLEKDI 40 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHH
Confidence 334444444443333
No 331
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.78 E-value=1.1e+02 Score=25.05 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hH-----HHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNE--LR-----DEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE--Lr-----~E~~~Lk~e~e~Le~qlk~ 173 (235)
++.|.....+-.+.-+.+.++|+.|+....+ .| .....|..++++|+..|..
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333334444566666666665543 22 3356888888888887765
No 332
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.40 E-value=1.1e+02 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
=++.|.+|++.|..-+.|+..|++|
T Consensus 44 EqgKVDQlqKRn~~HQKEi~~Lrae 68 (167)
T 4gkw_A 44 EQGKVDQLQKRNVAHQKEIGKLRAE 68 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444444344333333
No 333
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=48.29 E-value=26 Score=23.10 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=8.2
Q ss_pred HHHHHHHhHhHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e 163 (235)
++|+.-+.||.+.+..||.-
T Consensus 6 kelknyiqeleernaelknl 25 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhH
Confidence 33444444444444444333
No 334
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.21 E-value=64 Score=30.86 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=12.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..|+.....|+..+.+|+..+..
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666665544
No 335
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=47.69 E-value=67 Score=22.59 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEK---------LLGKINELKCEKNELR--DEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~---------L~~ei~~Lk~EknELr--~E~~~Lk~e~e~Le~qlk~ 173 (235)
++-|.+.+..|++.... |...-++|+..+.||- -|......|..+|+.+++.
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 44555666666554433 3333344444444432 2334555666677776653
No 336
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.67 E-value=35 Score=22.14 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 026702 153 LRDEKQRLK 161 (235)
Q Consensus 153 Lr~E~~~Lk 161 (235)
|+.+...|+
T Consensus 20 l~~kl~~Lk 28 (38)
T 2l5g_A 20 LEEKLLALQ 28 (38)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 337
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=47.60 E-value=24 Score=25.44 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.|.+|..+.++-.+|...|+.++.|.+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555443
No 338
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=47.38 E-value=38 Score=26.74 Aligned_cols=47 Identities=9% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+.+..+-|+...+.|...++.|.....++++....+...+..+.+++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777777766666666543
No 339
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=46.89 E-value=57 Score=27.00 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
++++.|+.+...+++.|+.-+.+..||......++.=++|-++-
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~ 48 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHA 48 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777776666666665443
No 340
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.77 E-value=24 Score=32.89 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
-|++++.++..+.+.+..|+.+.+.|+.+...+++|...|+
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777777787777888888888777766553
No 341
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=46.46 E-value=31 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
+..|+.|+..|..+=..|...+..++++|+.+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555556666666666666654
No 342
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=46.24 E-value=29 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~ 173 (235)
..+++..|+.++..||.+|+.
T Consensus 94 e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555543
No 343
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=46.12 E-value=9.1 Score=34.90 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+|+.|+...++++.+.+.|+..+..|+..+
T Consensus 19 ~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 19 SIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444554554444443
No 344
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=46.12 E-value=41 Score=22.18 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
..+.+.+|...-+.|++....|+.++..|...
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555444443
No 345
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=45.61 E-value=19 Score=27.21 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKV-SNEKLLGKINELKCEKNELRDEKQRLK 161 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~-~n~~L~~ei~~Lk~EknELr~E~~~Lk 161 (235)
|.+|-++|.++.-+++.+-. ....+...++..+.+++.|+.|...++
T Consensus 47 l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 47 LEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=45.04 E-value=1.5e+02 Score=25.91 Aligned_cols=44 Identities=27% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHhHhHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKC------EKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~------EknELr~E~~~Lk~e~e~Le~q 170 (235)
+.++.++....+|..+|..|+. .+..|++|..+..++..--|.|
T Consensus 104 ~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAq 153 (234)
T 3plt_A 104 ASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQ 153 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555667666666652 2344555554444444333333
No 347
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=44.98 E-value=1.3e+02 Score=24.61 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
+..|++-|.+|+.++..++... ..+|..++.. ...+...|+.+++.|+..|+.+
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~---n~eI~~ik~~---~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQM---NEAIDAAKAR---ASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888877777643 2334333333 4455677888888888888774
No 348
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=44.93 E-value=40 Score=31.07 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
++|++++....++..++.++.|-|+-|...|+..+++.
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 222 RRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 33333333333444556666666666666665544443
No 349
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=44.88 E-value=34 Score=26.29 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK-------------NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek-------------nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
-+.+|+.||+.++.+-+.--.-.....+-++..+.+. .++-++...|-..-..|=..+..
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~ 78 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQ 78 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3679999999999887653344455544455555443 34556666666555555556655
No 350
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=44.72 E-value=28 Score=25.23 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=9.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~ 164 (235)
+.|+.+...|.+|+..|+.++
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 351
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=44.45 E-value=6.9 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
|.-|+..++.|+.+.+.+++++.
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 352
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=44.13 E-value=1.8e+02 Score=26.04 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHhHHHH-
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLG--------KINELKCEKNELRDEK- 157 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~--------ei~~Lk~EknELr~E~- 157 (235)
.+.|+..+..|+.-|.|-. .--...|..++-..=.+|...++.++..+....+ .+++|+.....+.+|.
T Consensus 76 ~~el~~y~~~l~~qL~P~~--~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~ 153 (307)
T 2l7b_A 76 MKELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLR 153 (307)
T ss_dssp HHHHHHHHHHHTTCCCSCC--SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677998887732 1112223323323323444555555554443332 3566777776666664
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026702 158 QRLKNEKENLERQVKAL 174 (235)
Q Consensus 158 ~~Lk~e~e~Le~qlk~~ 174 (235)
.++....+.|+.+|.-+
T Consensus 154 ~~~~~~~eeLr~~L~py 170 (307)
T 2l7b_A 154 KRLLRDADDLQKRLAVY 170 (307)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhhH
Confidence 57777888888877653
No 353
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=44.11 E-value=30 Score=21.92 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENL 167 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~L 167 (235)
|+++-..|-.|++.|+..+..|+..++.|
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444556666666666666666655543
No 354
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.75 E-value=99 Score=23.09 Aligned_cols=73 Identities=7% Similarity=0.072 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026702 90 LNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEK----LLGKINELKCEKNELRDEKQRLKNEK 164 (235)
Q Consensus 90 lNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~----L~~ei~~Lk~EknELr~E~~~Lk~e~ 164 (235)
+-+.+..|+.++-- +..-.++ ..-.+--+-+.+|+..++.|.+.+.- -..||..=++-..+++.+...|+.+.
T Consensus 15 ~~~ql~~l~~~~~~-~~~~~~~-~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 15 TKEQLNRINNYITR-HNTAGDD-DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHH-TCCC--C-TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-ccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666511 1111112 44455556667777777777777666 33456666666677777776666654
No 355
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.62 E-value=91 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=15.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhc
Q 026702 76 SGSKACREKMRRDRLNDRFMELASIL 101 (235)
Q Consensus 76 ~~~h~~~ERrRRdklNd~F~~Lr~lL 101 (235)
-.+|..-|+|| .+|..++.+|..-|
T Consensus 7 d~s~LPpeqRk-kkL~~Ki~el~~ei 31 (98)
T 2ke4_A 7 DFSHLPPEQQR-KRLQQQLEERSREL 31 (98)
T ss_dssp CSSSSCHHHHH-HHHHHHHHHHHHHH
T ss_pred hhccCCHHHHH-HHHHHHHHHHHHHH
Confidence 34555566544 46777777776666
No 356
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.21 E-value=1.3e+02 Score=24.11 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 122 VTQLRDEAQKLKV-SNEKLLGKINELK--------CEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~-~n~~L~~ei~~Lk--------~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
++.|+.+++.|+. +...+-..+.+.+ .+...-+++...+...+..|+..|....
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 4567777777765 3444444443333 3334456666777888889999998854
No 357
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=43.12 E-value=1.2e+02 Score=25.51 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=17.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKALSSQPAFLP 182 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~~~p 182 (235)
++.|..+...+|.+-...+.+.+++.++|+.. ..+.++|
T Consensus 226 ~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 264 (265)
T 2q12_A 226 LANIGTSVQNVRREMDSDIETMQQTIEDLEVA-SDPLYVP 264 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCCC
Confidence 44455555555555555555555555566542 2334444
No 358
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=42.84 E-value=13 Score=30.08 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLL 140 (235)
Q Consensus 129 vq~Lk~~n~~L~ 140 (235)
+.+|+-.++.++
T Consensus 57 ~d~L~lQ~esme 68 (130)
T 3cl3_D 57 VDQLRMQGQSVE 68 (130)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 359
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=42.82 E-value=66 Score=21.97 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
....|..++..++.+......|-+.|-.=|-.|+.++.
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444444433444444444444444443
No 360
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.70 E-value=59 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
-.++++...+.++.+++|.+|+....
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 361
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=42.54 E-value=1e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+-.+.+.+||..--..+++.+.|+.++...|.+.-.+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34566677777666666676666666544444444444443
No 362
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.53 E-value=1.1e+02 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.|+.+++.=..++..|+..++.+..++..|...+.-|+.+...
T Consensus 58 ~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~ 100 (107)
T 2no2_A 58 SLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDS 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444445555555555555555444444433
No 363
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.20 E-value=72 Score=24.24 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=4.0
Q ss_pred HHHHHHHHHHhhc
Q 026702 89 RLNDRFMELASIL 101 (235)
Q Consensus 89 klNd~F~~Lr~lL 101 (235)
|+|+.+..++.=.
T Consensus 11 Rl~ELLD~ir~Ef 23 (92)
T 3vp9_A 11 KLNELLDAIRQEF 23 (92)
T ss_dssp ------CCTTTTT
T ss_pred hHHHHHHHHHHHH
Confidence 5666666655555
No 364
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=42.17 E-value=35 Score=26.27 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=0.5
Q ss_pred HHHHHhhc
Q 026702 94 FMELASIL 101 (235)
Q Consensus 94 F~~Lr~lL 101 (235)
|..|..-|
T Consensus 19 i~~L~~~L 26 (96)
T 3fx0_A 19 LEDLKQQL 26 (96)
T ss_dssp -------C
T ss_pred HHHHHHHH
Confidence 34444444
No 365
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.85 E-value=60 Score=22.14 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
+|.+|+.-+..|......|..+...|..++..||..
T Consensus 18 enaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555556666666666666554
No 366
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=40.82 E-value=1.4e+02 Score=23.98 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 122 VTQLRDEAQKLKV-SNEKLLGKINELK--------CEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~-~n~~L~~ei~~Lk--------~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
++.|+.+++.|+. +...+.+.+++-+ .|...-+++...+...+..|+.+|....
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 4567777777754 3444444443333 2333346667788888888998888754
No 367
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=40.79 E-value=1.8e+02 Score=25.36 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 83 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek 150 (235)
=|.||++|-+.+..|..-= |.. . -|..|+.++...+.++...+.++..+|+++
T Consensus 109 ~R~~R~~l~~~I~kLk~k~-P~s----~----------kl~~LeqELvraEae~lvaEAqL~n~kR~~ 161 (234)
T 3plt_A 109 SRDRKEKITDEIAHLKYKD-PQS----T----------KIPVLEQELVRAEAESLVAEAQLSNITREK 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTC----T----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CCC----c----------hHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Confidence 4789999999999998774 532 1 256778887777777766555665566554
No 368
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.75 E-value=13 Score=25.32 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLL 140 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~ 140 (235)
.||.+|+.+++.|+..+..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777665543
No 369
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=40.72 E-value=83 Score=28.91 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhc
Q 026702 87 RDRLNDRFMELASIL 101 (235)
Q Consensus 87 RdklNd~F~~Lr~lL 101 (235)
++.|-+-|..++.-|
T Consensus 142 ~~~~~~~~~~~~~e~ 156 (373)
T 3hhm_B 142 YDRLYEEYTRTSQEI 156 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHH
Confidence 345566666666655
No 370
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=40.62 E-value=49 Score=33.56 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026702 154 RDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|+....+++++++|+++|..+
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 841 EARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334456777777777777654
No 371
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=40.53 E-value=93 Score=21.83 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 157 KQRLKNEKENLERQVK 172 (235)
Q Consensus 157 ~~~Lk~e~e~Le~qlk 172 (235)
...+..-++.+..+|+
T Consensus 64 ~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 64 ITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 372
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=40.45 E-value=44 Score=30.34 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=6.3
Q ss_pred HHHHHHhHhHHHHHHH
Q 026702 145 ELKCEKNELRDEKQRL 160 (235)
Q Consensus 145 ~Lk~EknELr~E~~~L 160 (235)
.|..+.++|+++.+.|
T Consensus 32 ~Lq~~le~L~~KI~~L 47 (323)
T 1lwu_B 32 SMKSVLEHLRAKMQRM 47 (323)
T ss_dssp HHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444433333
No 373
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=40.45 E-value=24 Score=25.84 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026702 119 VQMVTQL 125 (235)
Q Consensus 119 I~yIk~L 125 (235)
++++..|
T Consensus 31 ~~Hl~~L 37 (71)
T 3bbp_D 31 ADHLNGL 37 (71)
T ss_dssp TSHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 374
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=40.27 E-value=1.3e+02 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 026702 86 RRDRLNDRFMEL 97 (235)
Q Consensus 86 RRdklNd~F~~L 97 (235)
||.-|.++.--|
T Consensus 26 KkkiLaER~kpL 37 (106)
T 1j1d_B 26 KKKILAERRKVL 37 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC
Confidence 344566665544
No 375
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=40.23 E-value=1.2e+02 Score=23.16 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC
Q 026702 153 LRDEKQRLKNEKENLERQVKALSSQ 177 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk~~~~~ 177 (235)
|-||..+|-.||...|.+++.+..|
T Consensus 57 LNDEINkL~rEK~~WE~rI~eLGGp 81 (92)
T 1x4t_A 57 LNDEINKLLREKGHWEVRIKELGGP 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444445667888899999887764
No 376
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.04 E-value=83 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 026702 159 RLKNEKENLERQV 171 (235)
Q Consensus 159 ~Lk~e~e~Le~ql 171 (235)
.|+.|+.+||.++
T Consensus 35 nlrdeiarlenev 47 (52)
T 3he5_B 35 NLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 377
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=39.99 E-value=78 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=12.4
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 149 EKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|+-.|......-.-||+.|..++..+
T Consensus 64 EKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 64 EKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 33334444444444555555565555
No 378
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.57 E-value=76 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
+|..+|+.++.-|+.....--..|+-|+.-+.+++.+.++|...|.
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888877776543336677788888888888777776653
No 379
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=39.35 E-value=20 Score=27.68 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 026702 83 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKV 134 (235)
Q Consensus 83 ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~ 134 (235)
+|.|-..|++.-..|...-+- -..|.+...=|..-|.-.+....++.-|+.
T Consensus 12 ~~~~~~ei~~L~~~L~~AEea-L~~KQ~~ideLKe~i~q~~~~~E~i~vL~a 62 (96)
T 3fx0_A 12 ERKRGMQLEDLKQQLQQAEEA-LVAKQEVIDKLKEEAEQHKIVMETVPVLKA 62 (96)
T ss_dssp --------------CCSSTTT-TTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333455555555444321 223444433333333333333333333333
No 380
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=39.07 E-value=1.4e+02 Score=23.47 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHhHHH---HHHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEK-------NELRDE---KQRLKNEKENLERQV 171 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek-------nELr~E---~~~Lk~e~e~Le~ql 171 (235)
+....-++|+..++.++..++.|.+-|.-..+.. .|+... ...++.++..++.+|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677888888888888888888776554322 223332 345566666666554
No 381
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.95 E-value=94 Score=24.84 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLER 169 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~ 169 (235)
+.+|+..|..+|++|..
T Consensus 41 f~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 41 LEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 382
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=38.91 E-value=1.2e+02 Score=25.28 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLE 168 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le 168 (235)
|+..+..|+.....|.++++......-+|..+...||-++-.|.
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44444444445555554444444444455555555555544443
No 383
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=38.01 E-value=28 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 130 QKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 130 q~Lk~~n~~L~~ei~~Lk~E 149 (235)
.+|+...--|++|..+.+.+
T Consensus 13 NELKa~vf~lqeEL~yY~~e 32 (65)
T 1yhn_B 13 NELKAKVFLLKEELAYFQRE 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444333
No 384
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=37.49 E-value=2.1e+02 Score=24.99 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhcCC
Q 026702 87 RDRLNDRFMELASILDP 103 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP 103 (235)
|.+|+..+.+|+.-|.|
T Consensus 39 ~~~l~~~le~lr~~L~P 55 (273)
T 3s84_A 39 SQKIGDNLRELQQRLEP 55 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44666777777777754
No 385
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=37.44 E-value=58 Score=20.12 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 154 RDEKQRLKNEKENLE 168 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le 168 (235)
..||-+|.+|...|+
T Consensus 14 eaenyqleqevaqle 28 (33)
T 1fmh_A 14 EAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 333444444444444
No 386
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=37.40 E-value=39 Score=20.27 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.1
Q ss_pred CCchhhhHHHHHHHHHHHHHH
Q 026702 108 KMDKTVLLADAVQMVTQLRDE 128 (235)
Q Consensus 108 K~dKasIL~dAI~yIk~Lr~~ 128 (235)
+++...+|-+|.+||.....+
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 356788999999998866553
No 387
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=36.91 E-value=1.3e+02 Score=23.11 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 026702 139 LLGKINELKC 148 (235)
Q Consensus 139 L~~ei~~Lk~ 148 (235)
|+.||+.|++
T Consensus 72 lqgEI~~Lnq 81 (99)
T 3ni0_A 72 LENEVTKLNQ 81 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 388
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.57 E-value=85 Score=24.60 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=20.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 143 INELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 143 i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
...|...+.+|+++...|+..++.|+..+..+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666654
No 389
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=36.14 E-value=1.3e+02 Score=22.27 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 117 DAVQMVTQLRDEAQ-----KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 117 dAI~yIk~Lr~~vq-----~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
+...-|+.||..+. .|++-.++|..=+.+-+.|-.+.+.+...-...++++..+|..-..
T Consensus 9 k~L~niR~LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI 73 (86)
T 3nr7_A 9 KILNNIRTLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI 73 (86)
T ss_dssp HHHTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555677777654 3444444444444444444444444444444445555555555333
No 390
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=36.03 E-value=1.2e+02 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=14.6
Q ss_pred HHHHHH---HHHHHHHHHhHhHHHH
Q 026702 136 NEKLLG---KINELKCEKNELRDEK 157 (235)
Q Consensus 136 n~~L~~---ei~~Lk~EknELr~E~ 157 (235)
.+.|+. .|++-++.++.||+|-
T Consensus 64 yE~LQDkL~qi~eAR~ALdaLR~eH 88 (98)
T 3f1i_H 64 YEGLQDKLAQIRDARGALSALREEH 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3677778888888874
No 391
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=36.02 E-value=1.7e+02 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.475 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhcCC
Q 026702 87 RDRLNDRFMELASILDP 103 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP 103 (235)
|.+|+.-+.++|.-|.|
T Consensus 84 r~~l~kdlee~r~~l~P 100 (185)
T 3r2p_A 84 RQEMSKDLEEVKAKVQP 100 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHH
Confidence 45666677777776644
No 392
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.01 E-value=28 Score=32.61 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=17.5
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 147 KCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 147 k~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
+.+..+++++...|+.+.++++.+++.+...|
T Consensus 71 e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 102 (437)
T 4b4t_L 71 DDQLKQRRQNIRDLEKLYDKTENDIKALQSIG 102 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33344444444455556666666666665555
No 393
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.94 E-value=57 Score=22.03 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKV 134 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~ 134 (235)
+-|..|++++..|+.
T Consensus 12 RsV~KLek~ID~LEd 26 (52)
T 2z5i_A 12 NEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 394
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=35.86 E-value=69 Score=25.63 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026702 158 QRLKNEKENLERQVK 172 (235)
Q Consensus 158 ~~Lk~e~e~Le~qlk 172 (235)
..-++|.++.+..|+
T Consensus 106 a~KkAEleKtqa~Ld 120 (125)
T 2pms_C 106 AAKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555554
No 395
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=35.70 E-value=1.1e+02 Score=26.24 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 026702 160 LKNEKENLERQVKA 173 (235)
Q Consensus 160 Lk~e~e~Le~qlk~ 173 (235)
|..=++-+..||..
T Consensus 138 l~eGvemi~k~l~~ 151 (213)
T 4ani_A 138 ILQGMEMVYRSLVD 151 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344455555554
No 396
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=35.68 E-value=1.4e+02 Score=27.53 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=12.0
Q ss_pred HHHHHHHHhHhHH------HHHHHHHHHHHHHH
Q 026702 143 INELKCEKNELRD------EKQRLKNEKENLER 169 (235)
Q Consensus 143 i~~Lk~EknELr~------E~~~Lk~e~e~Le~ 169 (235)
+..+..+..|+.. |...|..++.+|..
T Consensus 209 l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 209 IDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3444444444444 44444444444443
No 397
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=35.51 E-value=20 Score=32.62 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026702 140 LGKINELKCEKNELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 140 ~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ql 171 (235)
+..|..+..++..|+.....++.++..|++++
T Consensus 10 E~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 10 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 398
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=35.51 E-value=83 Score=24.29 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
.|..|..|+-.|......-.-||+.|..++..+
T Consensus 57 ~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 57 TIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444445555555545555566666665554
No 399
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=35.27 E-value=1.3e+02 Score=21.80 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 158 QRLKNEKENLERQVKA 173 (235)
Q Consensus 158 ~~Lk~e~e~Le~qlk~ 173 (235)
..|..-+..|.+.|..
T Consensus 70 ~~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 70 RELVEGLSQMEEAART 85 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 400
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=35.09 E-value=61 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNEL 153 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknEL 153 (235)
+..|+.++..-..+|.+|+.+.+.+
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333334444444444433
No 401
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.04 E-value=1.3e+02 Score=22.54 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=11.9
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 148 CEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 148 ~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.|++.-.++...|..++++++..|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555554444443
No 402
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=34.18 E-value=1.2e+02 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhcCC
Q 026702 87 RDRLNDRFMELASILDP 103 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP 103 (235)
|++++....+|+.-|.|
T Consensus 127 ~~~~~~~~eel~~~L~p 143 (243)
T 2a01_A 127 QEGARQKLHELQEKLSP 143 (243)
T ss_dssp HHHHHHHHHHHCCSCCS
T ss_pred HHHHHhhHHHHHHHHHh
Confidence 67888899999998866
No 403
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.95 E-value=1.3e+02 Score=21.77 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++.+......|..++..++.+....-.|-+.|-.=|-+|+.++.+
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444444444444445544444444445555555566665544
No 404
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=33.59 E-value=1.1e+02 Score=23.50 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
+..++|...+..|+.+.=.|+..++.-.-|+++|+...
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 56667777777777766555555554455555554433
No 405
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.52 E-value=64 Score=24.19 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLL 140 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~ 140 (235)
|..|+.+..+|+.+...+.
T Consensus 10 i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555544
No 406
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=33.44 E-value=95 Score=22.19 Aligned_cols=16 Identities=13% Similarity=0.464 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 026702 159 RLKNEKENLERQVKAL 174 (235)
Q Consensus 159 ~Lk~e~e~Le~qlk~~ 174 (235)
+|.-.+++|-.+|+.+
T Consensus 36 KL~Rk~DKl~~ele~l 51 (65)
T 3sja_C 36 KNNRKLDSLDKEINNL 51 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 407
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.18 E-value=59 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKVSNEKLLGK 142 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~~n~~L~~e 142 (235)
++.-+++-|.+|+.++..|.++|+.|..+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666666666544
No 408
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.08 E-value=1.7e+02 Score=22.72 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
|.+.+..|..++.+|+.-...|...++..+.
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 409
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=33.06 E-value=1.2e+02 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGKINE 145 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~ei~~ 145 (235)
.+|..|+..+++.+.....+..+++.
T Consensus 123 ~~L~~L~~~i~~~q~~~~~~~~~L~~ 148 (346)
T 2nrj_A 123 EGITDLRGEIQQNQKYAQQLIEELTK 148 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444444333
No 410
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=32.87 E-value=1.1e+02 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=9.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHH
Q 026702 150 KNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 150 knELr~E~~~Lk~e~e~Le~q 170 (235)
++-|-.+-..|..+.-+++.+
T Consensus 66 keRL~~dF~~l~~~fQ~~qr~ 86 (97)
T 1hs7_A 66 NGKLSADFKNLKTKYQSLQQS 86 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333444444454444444444
No 411
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=32.86 E-value=32 Score=31.78 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 154 RDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
.+|...|+.+++.|+.+|+.+-.|.
T Consensus 59 ~~e~~~l~~~l~~le~~l~~lL~p~ 83 (342)
T 1rq0_A 59 ELEIEKYEKELDQLYQELLFLLSPE 83 (342)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 6678899999999999998865543
No 412
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.81 E-value=1.1e+02 Score=20.52 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGK 142 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~e 142 (235)
..|++|+++.+.|+.+
T Consensus 12 RsV~KLek~ID~LEde 27 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDE 27 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444433
No 413
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.72 E-value=1.8e+02 Score=22.75 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026702 123 TQLRDEAQKLKVSNEK 138 (235)
Q Consensus 123 k~Lr~~vq~Lk~~n~~ 138 (235)
.+|++++.++......
T Consensus 16 ~ql~~qL~k~~~~r~~ 31 (112)
T 1x79_B 16 RQANDQLEKTMKDKQE 31 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555444444333
No 414
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=32.71 E-value=37 Score=25.96 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 119 VQMVTQLRDEAQKLKVSNEK 138 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~ 138 (235)
..-.++|+.++.+|+.++..
T Consensus 29 ~~~~~~lk~E~~~lk~E~~s 48 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNNS 48 (94)
T ss_dssp THHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666543
No 415
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=32.34 E-value=1.3e+02 Score=22.27 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELK-------CEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk-------~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|++|+.++.+|+..-.....++++|- .++-++-.+.-..-.+.+.++++|+.+
T Consensus 17 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 17 VADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=32.16 E-value=1.6e+02 Score=22.13 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKEN 166 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~ 166 (235)
+-.+.+.|||..--..-.+...|...-+.|++|++.|--.|+.|..++--
T Consensus 23 erte~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~ 72 (97)
T 1no4_A 23 ERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGL 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhcc
Confidence 33455556655544444444444444455555555555555555555433
No 417
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=31.98 E-value=1.3e+02 Score=20.90 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=11.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
++.+..-..|..-+..+.+.|..
T Consensus 55 ~~w~~~~~~~~~~L~~i~~~l~~ 77 (94)
T 3fav_B 55 QKWDATATELNNALQNLARTISE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554
No 418
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=31.95 E-value=1.5e+02 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
+.+|+ .+..+.++..+++.|...-.+|+.+..-|+..+++
T Consensus 352 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 391 (406)
T 4dyl_A 352 VQLLG-KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH 391 (406)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHh-HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44443 44444444444444444444444444444444433
No 419
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=31.70 E-value=1.3e+02 Score=20.76 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026702 152 ELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 152 ELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+++.....+...++.+..+|+.
T Consensus 60 ~~~~~~~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 60 QSKQAMQQYIPILEGISTDLKR 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445445443
No 420
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=31.39 E-value=1.5e+02 Score=21.67 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026702 118 AVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKE 165 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e 165 (235)
|..-|+++-.+++.|+.-...+...+..|.++--.|..+...++..++
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344566666666666665555555554444444444444444444433
No 421
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=31.36 E-value=89 Score=19.85 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchhhhHHHHHH-HHHHH
Q 026702 89 RLNDRFMELASILDPGRPPKMDKTVLLADAVQ-MVTQL 125 (235)
Q Consensus 89 klNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~-yIk~L 125 (235)
.+.+++..|.... ..+|..|+.+||+ ||.++
T Consensus 13 ~l~~~l~~lA~~~------~rs~s~lir~Ai~~yl~~~ 44 (52)
T 2gpe_A 13 ATRERIKSAATRI------DRTPHWLIKQAIFSYLEQL 44 (52)
T ss_dssp HHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------CcCHHHHHHHHHHHHHHHH
Confidence 4566777777776 3489999999984 65544
No 422
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=31.25 E-value=1.1e+02 Score=24.60 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHH
Q 026702 81 CREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQM 121 (235)
Q Consensus 81 ~~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~y 121 (235)
..-+.|.+.||++...|..++ - .+..-|..|..+
T Consensus 77 ~~i~~~~~~l~~~W~~L~~~~-~------~R~~~L~~a~~~ 110 (218)
T 3edu_A 77 ATIAEWKDGLNEMWADLLELI-D------TRMQLLAASYDL 110 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHH
Confidence 356677888999998888888 2 456666666544
No 423
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.07 E-value=1.5e+02 Score=21.48 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCE-------KNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~E-------knELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|++|++++.+|+..-.....++.+|-.. +-++-.+.-..-++.+.++++|+.+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776555555554444332 1223333334445555555566553
No 424
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.88 E-value=77 Score=26.22 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+++.|+.|+..++++..+-++++..|..|..
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544555555444433
No 425
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=30.56 E-value=9.7 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHhHHHHHHH
Q 026702 141 GKINELKCEKNELRDEKQRL 160 (235)
Q Consensus 141 ~ei~~Lk~EknELr~E~~~L 160 (235)
.++++|++|+.+|+.|+..|
T Consensus 66 ~ei~~L~~e~~~L~~e~~~L 85 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHP 85 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444
No 426
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=30.45 E-value=1.7e+02 Score=21.96 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 129 AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 129 vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+|+|+...-....|..+|..--..|+.|+..|-.-..+|=.|+.
T Consensus 28 lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 28 LQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 45555555556666666666666666666666666666666654
No 427
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=30.26 E-value=1.9e+02 Score=28.31 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 111 KTVLLADAVQMVTQLRDEAQKLKVSNE 137 (235)
Q Consensus 111 KasIL~dAI~yIk~Lr~~vq~Lk~~n~ 137 (235)
+.+.++..+.-.+..+.+...+.++..
T Consensus 375 lqaqvSa~t~e~k~A~d~l~a~~kek~ 401 (602)
T 1cii_A 375 ARNNLSARTNEQKHANDALNALLKEKE 401 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333333
No 428
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=30.26 E-value=96 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=4.9
Q ss_pred HHHHHHHhHhHHH
Q 026702 144 NELKCEKNELRDE 156 (235)
Q Consensus 144 ~~Lk~EknELr~E 156 (235)
..|+.-+.||++|
T Consensus 49 ~tLe~NLrEL~~e 61 (69)
T 1z0k_B 49 RTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 429
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=30.05 E-value=60 Score=19.10 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQ 130 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq 130 (235)
+|-|.+|-.|+.||...+.
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4678888899988877654
No 430
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=29.92 E-value=1.4e+02 Score=20.66 Aligned_cols=31 Identities=6% Similarity=0.069 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026702 121 MVTQLRDEAQKLKVSNEKLLGKINELKCEKN 151 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn 151 (235)
.|.+|+..+..++.-...+-.+++.+..+..
T Consensus 7 ~~~~le~kl~~lEnIv~~l~~eve~~~~~le 37 (65)
T 3m0d_C 7 LLAELEGKLRVFENIVAVLNKEVEASHLALA 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555555555544444334444443333
No 431
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=29.88 E-value=1.4e+02 Score=20.62 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~qlk 172 (235)
++..-..+..-++.+..+|.
T Consensus 61 ~~~~~~~~~~~L~~i~~~L~ 80 (99)
T 3zbh_A 61 LRPSFEKMAVLLNEVGQQLH 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 432
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=29.69 E-value=1.6e+02 Score=23.83 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
|..++.+|+.+-.++..+|+..
T Consensus 26 Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 26 VDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 433
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.63 E-value=60 Score=24.62 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 144 NELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+..+++|+......|+.+.-+++..|..+
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777777777777654
No 434
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=29.54 E-value=87 Score=22.37 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKC 148 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~ 148 (235)
+.+|+.||+.++.+-+.-........+-++..+.
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~ 37 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKS 37 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 5799999999998876533444454444444443
No 435
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.20 E-value=4e+02 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026702 153 LRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 153 Lr~E~~~Lk~e~e~Le~q 170 (235)
.+.+...|+.||..|+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344456777777777766
No 436
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=28.86 E-value=2.2e+02 Score=22.55 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELK--------CEKNELRDEKQRLKNEKENLERQVKALSS 176 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk--------~EknELr~E~~~Lk~e~e~Le~qlk~~~~ 176 (235)
++.|+.+++..........+.+++-+ .+...-+++...+...+..|+..|.....
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34566665553333333333333222 23445667777888899999999988543
No 437
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=28.58 E-value=49 Score=25.12 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
+.|+..+.++.++|+++.++|++.+..+.- +.++....+.-.+-...|..=.+.+.+-+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-L~~is~~l~~~~dl~~il~~i~~~l~~~l~ 61 (184)
T 3p01_A 2 NAVVQRAAETYDLLKQRTEELRRANAQMSL-LTVLVQVTQASNSLEAILTPIATAFAESFA 61 (184)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCSSSHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 457777888899999999999887665432 333444444333333444444444444443
No 438
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=28.45 E-value=2e+02 Score=22.15 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK----QRLKNEKENLERQVK 172 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~----~~Lk~e~e~Le~qlk 172 (235)
-..+.+.+++|..+|..||.....+..+.+.-.+|.+..-..- ++...+|.+|+.-++
T Consensus 37 E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 37 EDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4577889999999999999877666555443334443322221 233445555555443
No 439
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.44 E-value=2.3e+02 Score=24.30 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=8.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~qlk 172 (235)
...+.+...++++++.++.+|+
T Consensus 125 ~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 125 NNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444443333
No 440
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.19 E-value=90 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=11.0
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 026702 151 NELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 151 nELr~E~~~Lk~e~e~Le~q 170 (235)
..|+.++..|+.+++.|++|
T Consensus 60 ~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34555555555566555543
No 441
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=28.12 E-value=2.2e+02 Score=27.20 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=33.1
Q ss_pred hHHHHHHH---HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 80 ACREKMRR---DRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLG 141 (235)
Q Consensus 80 ~~~ERrRR---dklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ 141 (235)
..-|..|| ..|.+.+.-|++-+ - ...+...-++....+.+++.++.....|....+.|..
T Consensus 48 ~~~e~~~~~~~~~~~e~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 110 (526)
T 2de0_X 48 KDHEILRRRIENGAKELWFFLQSEL-K-KLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQ 110 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH-H-HhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666 34445555555444 1 1112334556666666666666666666666666554
No 442
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.07 E-value=65 Score=25.81 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q 026702 93 RFMELASIL 101 (235)
Q Consensus 93 ~F~~Lr~lL 101 (235)
....|-..+
T Consensus 21 kv~~lek~l 29 (125)
T 2pms_C 21 QVHRLEQEL 29 (125)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 344444444
No 443
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=28.06 E-value=2.1e+02 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=12.8
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 149 EKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 149 EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
....+-++|+.|-.+++.++++...
T Consensus 42 ~L~~i~~~K~~ll~~L~~~~~~R~~ 66 (154)
T 3opc_A 42 SLQAAVQRKETLADDLAQLGAERDA 66 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554433
No 444
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=27.94 E-value=1.1e+02 Score=21.49 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026702 116 ADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 116 ~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~ 155 (235)
-+--+-|..|-.++.+.+..-..|..++..+..+-+||..
T Consensus 8 veNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 8 IENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666555555555555555555444
No 445
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.92 E-value=41 Score=26.47 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKIN 144 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~ 144 (235)
+.+|..++++|+-||..|..+++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777778888888777776654
No 446
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=27.76 E-value=1.6e+02 Score=24.17 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 026702 120 QMVTQLRDEAQKLKVSNEKLLGK---INELKCEKNELRDEKQRLKNEKENLERQVKALSSQPAF 180 (235)
Q Consensus 120 ~yIk~Lr~~vq~Lk~~n~~L~~e---i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~~ 180 (235)
..|+++-...+++.+-+.++-.. ..+|+.- ++.-...-+.++++|++-++.+...|+-
T Consensus 12 ~~L~Diy~aE~Q~~~aL~~ma~~~a~~peLk~a---~e~Hl~eT~~qi~rLe~vf~~lg~~~~~ 72 (171)
T 3ogh_B 12 DWLRDAHAMEKQAESMLESMASRIDNYPELRAR---IEQHLSETKNQIVQLETILDRNDISRSV 72 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 33444444444444444444322 2444444 3334455678999999999999887753
No 447
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=27.76 E-value=1.6e+02 Score=23.05 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=20.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026702 145 ELKCEKNELRDEKQRLKNEKENLERQVKALSSQP 178 (235)
Q Consensus 145 ~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p 178 (235)
++..-.+||+.....++.+++.|+.=+..+..+|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 4444555566666666666666666666555544
No 448
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.68 E-value=81 Score=24.41 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=1.7
Q ss_pred HHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNE 137 (235)
Q Consensus 125 Lr~~vq~Lk~~n~ 137 (235)
|..+++.|++.++
T Consensus 4 l~~~~~~l~~~~~ 16 (182)
T 3kqg_A 4 LNAQIPELKSDLE 16 (182)
T ss_dssp ---------CHHH
T ss_pred hhhhHHHHHHHHH
Confidence 4455555554433
No 449
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.44 E-value=1.8e+02 Score=22.07 Aligned_cols=18 Identities=22% Similarity=0.019 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026702 134 VSNEKLLGKINELKCEKN 151 (235)
Q Consensus 134 ~~n~~L~~ei~~Lk~Ekn 151 (235)
.+...|+.|+.+|+.|.+
T Consensus 23 ~~~~~lk~E~~~lk~E~~ 40 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445555555555554
No 450
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=27.44 E-value=1.7e+02 Score=23.86 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 026702 122 VTQLRDEAQKLKVSNEKLLGK---INELKCEKNELRDEKQRLKNEKENLERQVKALSSQPAFLP 182 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~e---i~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~~~p~~~p 182 (235)
|+++-...+++.+-+.++-.. ..+|+.- ++.-...-+.++++|++-++.+...|+-.+
T Consensus 11 L~Diy~aE~Q~~~aL~~ma~~~a~~peLk~a---~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k 71 (166)
T 3hiu_A 11 LQDAYAMEKEAETMMAAMASRIEHYPELKRR---IEQHVEETQQQSAGVQRCLELLNGSIPTAK 71 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCcCc
Confidence 333333344444444444322 3344444 333444567899999999999999887555
No 451
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.17 E-value=1.4e+02 Score=19.86 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 121 MVTQLRDEAQKLKVSNEKLL 140 (235)
Q Consensus 121 yIk~Lr~~vq~Lk~~n~~L~ 140 (235)
.|.+|+..++.|+.....|.
T Consensus 6 kv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 452
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.67 E-value=2.9e+02 Score=23.25 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026702 82 REKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSN 136 (235)
Q Consensus 82 ~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n 136 (235)
.|..|+..-..++.+ ...+|-...-++-..+ -++.++|...+..|+.+.
T Consensus 33 ~E~e~k~eEKkkiLa--ER~kPLnid~Lse~~L----~e~ckELh~~I~~LEeEK 81 (180)
T 1j1e_C 33 REAEERRGEKGRALS--TRAQPLELAGLGFAEL----QDLARQLHARVDKVDEER 81 (180)
T ss_dssp HHHHHHHHHHHHHHH--HHSCCCCGGGCCHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455555544445444 3444423233332222 344455555555555543
No 453
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=26.60 E-value=2.5e+02 Score=22.48 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 82 REKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLG 141 (235)
Q Consensus 82 ~ERrRRdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ 141 (235)
.|..|+..-..+|.+ ...+|-...-++- .+--+..++|...+..|+.+.=.|..
T Consensus 33 kE~e~k~eeKkkiLa--ER~~pL~id~ls~----~~L~e~~keLh~~I~~LEeEKYDlE~ 86 (133)
T 1j1d_C 33 REAEERRGEKGRALS--TRAQPLELAGLGF----AELQDLARQLHARVDKVDEERYDIEA 86 (133)
T ss_dssp HHHHHHHHHHHHHHH--HHTCCCCCTTCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455555544445444 3344423333331 22234444555555555544433333
No 454
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=26.54 E-value=2.3e+02 Score=25.00 Aligned_cols=6 Identities=17% Similarity=0.612 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026702 143 INELKC 148 (235)
Q Consensus 143 i~~Lk~ 148 (235)
|+++..
T Consensus 179 I~EID~ 184 (242)
T 3uux_B 179 IRDIEV 184 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 455
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.49 E-value=2.6e+02 Score=23.08 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=9.5
Q ss_pred HHHHHHHhHhHHHHHHHHHH
Q 026702 144 NELKCEKNELRDEKQRLKNE 163 (235)
Q Consensus 144 ~~Lk~EknELr~E~~~Lk~e 163 (235)
..++++.+.+|.|...++.-
T Consensus 103 ak~~a~~~q~~~d~~~~~~~ 122 (158)
T 3tul_A 103 AQAEAAVEQAGKEATEAKEA 122 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444433
No 456
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.44 E-value=2.8e+02 Score=24.01 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~ 158 (235)
|..++++...++.++...+.+.++...|+|+.-.
T Consensus 183 l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 183 LSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555433
No 457
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=26.40 E-value=2.5e+02 Score=22.57 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=3.7
Q ss_pred HHHHHhhc
Q 026702 94 FMELASIL 101 (235)
Q Consensus 94 F~~Lr~lL 101 (235)
+..|+.-|
T Consensus 58 ~~~l~~~l 65 (185)
T 3r2p_A 58 FSKLREQL 65 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 458
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.23 E-value=1.3e+02 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Q 026702 116 ADAVQMVTQLRDE-----------------AQKLKVSNEKLLGKINELK 147 (235)
Q Consensus 116 ~dAI~yIk~Lr~~-----------------vq~Lk~~n~~L~~ei~~Lk 147 (235)
....+|.+.|... ++.|+++.++|..++..++
T Consensus 219 ~~~~~yf~~l~~~~~~~~~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 219 DRDDKFYYNRLKYYKDRVLVPLAYINFDEYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp --CHHHHHHHHHHHGGGEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777543 3445555555555555553
No 459
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.19 E-value=1.7e+02 Score=20.40 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026702 127 DEAQKLKVSNEKLLGKINELKCE 149 (235)
Q Consensus 127 ~~vq~Lk~~n~~L~~ei~~Lk~E 149 (235)
..|=.|+.+...|+.+.+.|++-
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 460
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=26.11 E-value=22 Score=33.07 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HhHhHHHHHHHHHHH
Q 026702 89 RLNDRFMELASIL-DPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINEL--KCE-KNELRDEKQRLKNEK 164 (235)
Q Consensus 89 klNd~F~~Lr~lL-pP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~L--k~E-knELr~E~~~Lk~e~ 164 (235)
.+.++|.+|...+ .|+--...+++.-|..-...|+.+-....+++...+.+.+- .+| -.+ +.+..+|...|+.++
T Consensus 11 ~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~-~el~eD~e~~~~a~~e~~~l~~~~ 89 (360)
T 2b3t_B 11 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETA-QMMLDDPEMREMAQDELREAKEKS 89 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred HHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4555666666644 23322344555555555444444444444444322222211 111 111 134556667777778
Q ss_pred HHHHHHHHHhcCC
Q 026702 165 ENLERQVKALSSQ 177 (235)
Q Consensus 165 e~Le~qlk~~~~~ 177 (235)
+.|+.+|+.+-.+
T Consensus 90 ~~le~~l~~~ll~ 102 (360)
T 2b3t_B 90 EQLEQQLQVLLLP 102 (360)
T ss_dssp -----CCCCCCCS
T ss_pred HHHHHHHHhhhcC
Confidence 8887776654433
No 461
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.94 E-value=4.6e+02 Score=25.37 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q 026702 160 LKNEKENLERQVKAL 174 (235)
Q Consensus 160 Lk~e~e~Le~qlk~~ 174 (235)
.+.+.+.|+.|+..+
T Consensus 565 ~~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 565 FQKESRIMKNEIQDL 579 (592)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566665553
No 462
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.82 E-value=2.1e+02 Score=21.33 Aligned_cols=42 Identities=10% Similarity=0.229 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhHH
Q 026702 114 LLADAVQMVTQLRDEAQKLKV-SNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 114 IL~dAI~yIk~Lr~~vq~Lk~-~n~~L~~ei~~Lk~EknELr~ 155 (235)
-|.+|-++|.++.-+++.+-. ....+...++..+.+.+.|+.
T Consensus 57 ~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 57 KQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666655555532 223444444444444444433
No 463
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=25.66 E-value=1.4e+02 Score=22.13 Aligned_cols=7 Identities=43% Similarity=0.430 Sum_probs=2.5
Q ss_pred HHHHHhH
Q 026702 146 LKCEKNE 152 (235)
Q Consensus 146 Lk~EknE 152 (235)
|..-++|
T Consensus 36 l~~VveE 42 (86)
T 3nr7_A 36 LEVVVNE 42 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 464
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=25.63 E-value=2.8e+02 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNE 152 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknE 152 (235)
|.+|+.-+.+-+...+.|...|.+|-.+.+.
T Consensus 42 i~en~~~iakNqadI~~L~~dI~dLd~~v~l 72 (157)
T 2qih_A 42 ANENKDGIAKNQADIQLHDKKITNLGILHSM 72 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444444333
No 465
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=25.38 E-value=1.3e+02 Score=21.27 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH------------HHHHHHHHHHHHHHHHHhc
Q 026702 126 RDEAQKLKVSNEKLLGKINELKCEKNELRDE------------KQRLKNEKENLERQVKALS 175 (235)
Q Consensus 126 r~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E------------~~~Lk~e~e~Le~qlk~~~ 175 (235)
+..+..+......|+.++.+|+.+++.|... ..+....-+.|++.|..++
T Consensus 12 ~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~ 73 (96)
T 3h6p_C 12 MAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMS 73 (96)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555544433 3445555556666666544
No 466
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=25.38 E-value=3.5e+02 Score=23.81 Aligned_cols=16 Identities=0% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 026702 86 RRDRLNDRFMELASIL 101 (235)
Q Consensus 86 RRdklNd~F~~Lr~lL 101 (235)
+|..|++.+..|..++
T Consensus 102 k~~Hl~eq~~~Lk~l~ 117 (251)
T 1jad_A 102 KEQHATEQTAKITELA 117 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555555
No 467
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=25.37 E-value=22 Score=33.08 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhc-CCCCCCCCchh-------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhHHHHH
Q 026702 88 DRLNDRFMELASIL-DPGRPPKMDKT-------VLLADAVQMVTQLRDEAQKLKVSNE-KLLGKINELKCEKNELRDEKQ 158 (235)
Q Consensus 88 dklNd~F~~Lr~lL-pP~~~~K~dKa-------sIL~dAI~yIk~Lr~~vq~Lk~~n~-~L~~ei~~Lk~EknELr~E~~ 158 (235)
+.+.++|.+|...+ .|+--...+|+ +-|...++.+++|+..++.++.-.+ -+.++ -.++.+|..
T Consensus 20 ~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee-------d~~a~~e~~ 92 (365)
T 2ihr_1 20 PQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE-------REALKPELE 92 (365)
T ss_dssp HHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT-------GGGTGGGTH
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------HHHHHHHHH
Confidence 45666778887765 22111122333 3344444444444444333333222 11111 156777788
Q ss_pred HHHHHHHHHHH
Q 026702 159 RLKNEKENLER 169 (235)
Q Consensus 159 ~Lk~e~e~Le~ 169 (235)
.|+.+++.|+.
T Consensus 93 ~l~~~~~~le~ 103 (365)
T 2ihr_1 93 EAAKKLDELYH 103 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 468
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.11 E-value=1.3e+02 Score=18.59 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINEL 146 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~L 146 (235)
+.-|++.++.|+..|-.-.+++..|
T Consensus 3 vqalkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456667777776665544444433
No 469
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=24.74 E-value=56 Score=29.25 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 136 NEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 136 n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
...|.++.++.+.+++++.++...+..=+..||+|...
T Consensus 231 ~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~ 268 (319)
T 2p90_A 231 LLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 268 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 34455555555556666666555555555666666544
No 470
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=24.72 E-value=1.7e+02 Score=19.93 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHhHHHHHHH
Q 026702 142 KINELKCEKNELRDEKQRL 160 (235)
Q Consensus 142 ei~~Lk~EknELr~E~~~L 160 (235)
|+..|+.-++||++|...+
T Consensus 29 EV~~Le~NLrEL~~ei~~~ 47 (51)
T 1yzm_A 29 EVRTLQENLRQLQDEYDQQ 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444443
No 471
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=24.69 E-value=37 Score=25.98 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 026702 137 EKLLGKINELKCEKN 151 (235)
Q Consensus 137 ~~L~~ei~~Lk~Ekn 151 (235)
..|+.|+.+|+.|.+
T Consensus 33 ~~lk~E~~~lk~E~~ 47 (94)
T 3vlc_E 33 LAKVKERHELKEFNN 47 (94)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444444
No 472
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=24.49 E-value=39 Score=19.92 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=5.1
Q ss_pred HHHHHHH
Q 026702 82 REKMRRD 88 (235)
Q Consensus 82 ~ERrRRd 88 (235)
+||+||.
T Consensus 12 aerrrrr 18 (26)
T 1g70_B 12 AERRRRR 18 (26)
T ss_pred HHHHHHH
Confidence 7887774
No 473
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.49 E-value=1.5e+02 Score=28.44 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 026702 115 LADAVQMV 122 (235)
Q Consensus 115 L~dAI~yI 122 (235)
|.+.|+.|
T Consensus 371 iD~vI~iI 378 (470)
T 3ilw_A 371 LDEVIALI 378 (470)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.33 E-value=65 Score=30.14 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=11.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 146 LKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 146 Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
++.+...|+.+...++.++++|+.
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 77 RRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333334444444455555555543
No 475
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=24.22 E-value=1.6e+02 Score=25.33 Aligned_cols=11 Identities=36% Similarity=0.317 Sum_probs=4.8
Q ss_pred HHHHHhHhHHH
Q 026702 146 LKCEKNELRDE 156 (235)
Q Consensus 146 Lk~EknELr~E 156 (235)
++.+++.|..+
T Consensus 71 ~~~~l~~l~~~ 81 (267)
T 1dn1_B 71 TKEELEELMSD 81 (267)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 476
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.19 E-value=1.4e+02 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELR 154 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr 154 (235)
++=+.|..|...++++.+..+..+..++.++....||.
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444444434444444444433
No 477
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=24.12 E-value=1.1e+02 Score=29.61 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026702 154 RDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 154 r~E~~~Lk~e~e~Le~qlk~ 173 (235)
.++...|..+...++.+|..
T Consensus 111 ~~~i~~~e~~~~~~~~~~~~ 130 (522)
T 3vbb_A 111 DEAILKCDAERIKLEAERFE 130 (522)
T ss_dssp HHSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777766
No 478
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=23.88 E-value=2.3e+02 Score=21.35 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026702 124 QLRDEAQKL 132 (235)
Q Consensus 124 ~Lr~~vq~L 132 (235)
+|....+.+
T Consensus 6 el~~~~~~~ 14 (138)
T 4ayc_A 6 ELNRSKKDF 14 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 479
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.87 E-value=2.3e+02 Score=21.13 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 135 SNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
.+..|+.++..++.+....-.|-+.|-.=|-.|+.++..
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333344455555556555543
No 480
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.78 E-value=1.3e+02 Score=21.71 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHH
Q 026702 135 SNEKLLGKINELKCEKNELRD 155 (235)
Q Consensus 135 ~n~~L~~ei~~Lk~EknELr~ 155 (235)
+.+.|+..+++|..|...++.
T Consensus 47 EV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666665543
No 481
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.78 E-value=1.2e+02 Score=24.40 Aligned_cols=27 Identities=4% Similarity=-0.068 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEK 150 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ek 150 (235)
.|+.++.+++.....+..++.+|+.+.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRF 30 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444333333
No 482
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.62 E-value=2.6e+02 Score=21.76 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKN------------ELRDEKQRLKNEKENLERQV 171 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~Ekn------------ELr~E~~~Lk~e~e~Le~ql 171 (235)
|++|+.++...+.++..-+.++++-+.... .-+.+...|+..+..|++||
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.34 E-value=89 Score=22.95 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026702 117 DAVQMVTQLRDEAQKLKVSNEKLLGKI----NELKCEKNELRDEKQRLKNEKENLERQVKALS 175 (235)
Q Consensus 117 dAI~yIk~Lr~~vq~Lk~~n~~L~~ei----~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~~ 175 (235)
..+..|+.|+..==.|++-..-|.... ..|...+.+|.++...|+..++.|+..+..|+
T Consensus 46 ~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 108 (108)
T 2vz4_A 46 DRLQQILFYRELGFPLDEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQAMEARS 108 (108)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=23.16 E-value=1.6e+02 Score=21.03 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|.+||.++..+..+.-.|..+.-.+-.+.-+++.+...---+-+|-++.|..+
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~vl~~~ 57 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYL 57 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHH
No 485
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.00 E-value=58 Score=26.30 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
|..|.+.......++..|+.++..+-..++.|...-......-..+..+|..|..+||
T Consensus 89 LeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kLk 146 (147)
T 2b9c_A 89 LERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVG 146 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHhc
No 486
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=22.90 E-value=20 Score=30.41 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHhHHHHHH
Q 026702 112 TVLLADAVQMVTQLRDEAQKLK--VSNEKLLGKINELKCEKNELRDEKQR 159 (235)
Q Consensus 112 asIL~dAI~yIk~Lr~~vq~Lk--~~n~~L~~ei~~Lk~EknELr~E~~~ 159 (235)
.+|+.++....++-+++.+.-+ ++.+.+.+++++|+++.++|+++..+
T Consensus 232 ~aii~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 232 VAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp HHHHHHHC------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 487
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=22.79 E-value=33 Score=27.73 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHHHHHH----HHHHHHHHHHHh
Q 026702 118 AVQMVTQLRDEAQKLKV---SNEKLLGKINELKCEKNELRDEKQRLKN----EKENLERQVKAL 174 (235)
Q Consensus 118 AI~yIk~Lr~~vq~Lk~---~n~~L~~ei~~Lk~EknELr~E~~~Lk~----e~e~Le~qlk~~ 174 (235)
+...+++|++.-.+|+. +...|++....+......+..|...++. ++++|+-|+..|
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esm 67 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSV 67 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=22.75 E-value=18 Score=30.74 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 133 KVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 133 k~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+...+.-+++.++.+.+.+++.+|...|++++++|+++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 241 ILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 489
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=22.73 E-value=2e+02 Score=20.94 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026702 122 VTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEK 157 (235)
Q Consensus 122 Ik~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~ 157 (235)
|.+||.++..+..+.-.|..+--.+-.++-+++.+.
T Consensus 14 L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 14 IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 490
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.71 E-value=1.9e+02 Score=22.92 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 110 DKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 110 dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
+++.-+...|.-|+.+-.+++++....-..-.....++.+.+.|..+...+-..+...=..|+.
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=22.70 E-value=1.2e+02 Score=27.43 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 125 LRDEAQKLKVSNEKLLG-----KINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~-----ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
+++++++.-...+.+.+ .|+.|..+.++|+++.+.|+..+..+..
T Consensus 7 ~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=22.68 E-value=4.6e+02 Score=25.62 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 115 LADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 115 L~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|.+|=.-|..++..++.+......+..+.+.....++.++.|+..++..+..+++.+..
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE 416 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAE 416 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
No 493
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.64 E-value=1.7e+02 Score=23.68 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 170 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~q 170 (235)
.|++....|+..++.|.+++..|..+-..++.++.+.-.+
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~ 50 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKK 50 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 494
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.61 E-value=2.6e+02 Score=21.37 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 125 LRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 125 Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
|..++..|+...+.-..--++|-.++.||..-...|++|.+.-++.|..+
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el 51 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLREL 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=22.60 E-value=1.9e+02 Score=24.18 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026702 131 KLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVK 172 (235)
Q Consensus 131 ~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk 172 (235)
.++.....|+.++.+++. ++++...++.+|.+.++....
T Consensus 39 ~~~~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ 77 (197)
T 1dkg_A 39 PRDEKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTE 77 (197)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
No 496
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=22.59 E-value=1.9e+02 Score=21.12 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026702 139 LLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 173 (235)
Q Consensus 139 L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~ 173 (235)
|++.++.|..-.+-|+....+|-+|-+.-++.||.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=22.39 E-value=1.4e+02 Score=24.90 Aligned_cols=72 Identities=14% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHH--------H
Q 026702 87 RDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINE-LKCEKNELRDE--------K 157 (235)
Q Consensus 87 RdklNd~F~~Lr~lLpP~~~~K~dKasIL~dAI~yIk~Lr~~vq~Lk~~n~~L~~ei~~-Lk~EknELr~E--------~ 157 (235)
|.+|+.-+.++|.-|.|-.. ++-..++..++.|+.....+-++.++ +.....+|+.. .
T Consensus 82 r~~l~kd~ee~r~~l~py~~-------------el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr 148 (216)
T 2lem_A 82 RQEMNKDLEEVKQKVQPYLD-------------EFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFR 148 (216)
T ss_dssp HHHHHHHHHHHHHHTTTTCC-------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHH
T ss_pred HHHHhccHHHHHHhhhHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 026702 158 QRLKNEKENLERQV 171 (235)
Q Consensus 158 ~~Lk~e~e~Le~ql 171 (235)
.++....+.|+.+|
T Consensus 149 ~kl~~~~e~lk~~l 162 (216)
T 2lem_A 149 DRMRTHVDSLRTQL 162 (216)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
No 498
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=22.37 E-value=2.4e+02 Score=22.78 Aligned_cols=60 Identities=8% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH-hcCCCC
Q 026702 119 VQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA-LSSQPA 179 (235)
Q Consensus 119 I~yIk~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~-~~~~p~ 179 (235)
+..|+++....+++.+-+.++-..+.. ..=+.-|..-...-+.++++|++-++. +...|+
T Consensus 11 ~~~L~D~y~aE~q~~~al~~~~~~a~~-p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~ 71 (166)
T 2gs4_A 11 IHLLSDTYSAEKQLTRALAKLARATSN-EKLSQAFHAHLEETHGQIERIDQVVESESNLKIK 71 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
No 499
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=22.33 E-value=1.1e+02 Score=22.75 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026702 124 QLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLER 169 (235)
Q Consensus 124 ~Lr~~vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~ 169 (235)
.|...+.+++.....|+++.....+--.....=-+.|+-++|++.+
T Consensus 9 ~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 9 TVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.13 E-value=2.3e+02 Score=21.64 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026702 117 DAVQMVTQLRDE---AQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 174 (235)
Q Consensus 117 dAI~yIk~Lr~~---vq~Lk~~n~~L~~ei~~Lk~EknELr~E~~~Lk~e~e~Le~qlk~~ 174 (235)
..+..|+.|+.. +++.+.-.............-..-|++....|..+++.|+..++.+
T Consensus 45 ~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L 105 (135)
T 1q06_A 45 NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQL 105 (135)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!