Query 026703
Match_columns 234
No_of_seqs 172 out of 1650
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:33:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 3.7E-45 8E-50 304.4 12.0 213 2-232 34-293 (370)
2 smart00164 TBC Domain in Tre-2 100.0 3.3E-31 7.1E-36 215.7 13.9 158 1-232 2-182 (199)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 4.8E-31 1E-35 227.6 8.0 178 2-232 187-400 (484)
4 KOG2058 Ypt/Rab GTPase activat 100.0 7.8E-29 1.7E-33 219.1 12.4 116 105-233 195-333 (436)
5 KOG1091 Ypt/Rab-specific GTPas 100.0 1.7E-29 3.7E-34 224.4 7.0 140 9-174 28-168 (625)
6 KOG2224 Uncharacterized conser 99.9 5.2E-28 1.1E-32 209.6 7.2 182 2-233 434-660 (781)
7 COG5210 GTPase-activating prot 99.9 5.5E-26 1.2E-30 208.6 12.8 160 1-232 210-392 (496)
8 PF00566 RabGAP-TBC: Rab-GTPas 99.9 1.3E-22 2.9E-27 166.1 14.6 114 104-232 44-179 (214)
9 KOG2223 Uncharacterized conser 99.9 2E-22 4.4E-27 174.8 9.0 111 107-232 356-489 (586)
10 KOG2197 Ypt/Rab-specific GTPas 99.8 1.1E-20 2.3E-25 171.7 4.0 113 107-232 238-371 (488)
11 KOG2222 Uncharacterized conser 99.8 8.7E-19 1.9E-23 154.0 9.8 153 2-230 169-344 (848)
12 KOG4347 GTPase-activating prot 99.7 1.6E-16 3.5E-21 144.3 7.1 153 2-232 201-374 (671)
13 KOG2221 PDZ-domain interacting 99.6 1E-15 2.2E-20 122.8 9.2 98 104-215 140-243 (267)
14 KOG1102 Rab6 GTPase activator 99.6 2.5E-16 5.4E-21 140.6 5.3 111 107-232 186-318 (397)
15 KOG4436 Predicted GTPase activ 99.6 1.6E-15 3.4E-20 140.2 10.3 114 105-232 620-756 (948)
16 KOG1093 Predicted protein kina 99.5 2.3E-14 4.9E-19 128.8 8.6 112 107-232 391-525 (725)
17 KOG2595 Predicted GTPase activ 98.9 1.3E-09 2.8E-14 93.1 5.1 115 107-233 97-232 (395)
18 KOG4436 Predicted GTPase activ 98.7 1E-07 2.3E-12 89.2 10.3 119 104-233 225-371 (948)
19 KOG1648 Uncharacterized conser 97.7 1.1E-06 2.5E-11 78.7 -5.6 110 107-232 607-730 (813)
20 KOG2224 Uncharacterized conser 94.7 0.16 3.5E-06 45.6 7.8 70 103-179 520-593 (781)
21 KOG3636 Uncharacterized conser 90.2 0.73 1.6E-05 41.8 5.8 109 107-229 67-195 (669)
22 KOG2801 Probable Rab-GAPs [Int 64.1 10 0.00023 32.7 4.0 41 133-173 109-149 (559)
23 PF08109 Antimicrobial14: Lact 32.3 34 0.00073 18.3 1.3 15 152-166 3-17 (31)
24 COG5460 Uncharacterized conser 24.8 71 0.0015 21.8 2.2 17 154-170 51-67 (82)
25 PF01023 S_100: S-100/ICaBP ty 21.8 58 0.0013 19.5 1.2 12 223-234 30-41 (44)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.7e-45 Score=304.41 Aligned_cols=213 Identities=45% Similarity=0.731 Sum_probs=174.7
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|+|++.++|+.+|++||||+|++.+.|.+.++++|..|.+++++....|..... ..+.. ++
T Consensus 34 ~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~----------------~~~v~--~~ 95 (370)
T KOG4567|consen 34 YGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDN----------------SKKVD--SN 95 (370)
T ss_pred cCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCcccccc----------------ccccc--cC
Confidence 6999877899999999999999999999999999999999999998876653111 01111 11
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcch----------------------hHHHHHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFAT----------------------SNQEALK 139 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~----------------------~~~~~l~ 139 (234)
....++||+.+++|.|+++|++.++..||++||.||.|+.++|+.....++ -+.....
T Consensus 96 D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~e 175 (370)
T KOG4567|consen 96 DTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAE 175 (370)
T ss_pred cccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHH
Confidence 256789999999999999999999999999999999999999998766552 1122357
Q ss_pred HHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHHHhHHhHhhccccch---------hhhH------
Q 026703 140 NILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVST---------LYNR------ 204 (234)
Q Consensus 140 ~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~~~~~---------~~~~------ 204 (234)
|||++||+.||+||||||||+|+|||++|+..+++..+..++|+|||+||..||..++..+ ++.-
T Consensus 176 rilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~ 255 (370)
T KOG4567|consen 176 RILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLS 255 (370)
T ss_pred HHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999997666555 2221
Q ss_pred -HHHHHHHHHHH---------hhhhhhhhHHHHhhhcc
Q 026703 205 -NLLLYKLVFYR---------CYFGGSYMPVVVAREIR 232 (234)
Q Consensus 205 -~~~~~~~~~~~---------~~f~~~w~~~l~~rel~ 232 (234)
.++-.|..+.+ .+|++||+.+||+.|||
T Consensus 256 ~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~ 293 (370)
T KOG4567|consen 256 ELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFP 293 (370)
T ss_pred HHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCC
Confidence 11222222222 18999999999999998
No 2
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.97 E-value=3.3e-31 Score=215.69 Aligned_cols=158 Identities=28% Similarity=0.473 Sum_probs=124.6
Q ss_pred CCCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCccccc
Q 026703 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (234)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
.+|||+. +|+.+|+.++|+.+...+. .+..|.+++++....
T Consensus 2 ~~Gip~~--~R~~vW~~ll~~~~~~~~~-------~~~~Y~~l~~~~~~~------------------------------ 42 (199)
T smart00164 2 RKGVPPS--LRGVVWKLLLNAQPMDTSA-------DKDLYSRLLKETAPK------------------------------ 42 (199)
T ss_pred CCCCCHH--HHHHHHHHHhCCchhhhcc-------cchHHHHHHHhhcCC------------------------------
Confidence 4799999 9999999999998754432 367888877654211
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhH
Q 026703 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (234)
Q Consensus 81 ~~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~ 160 (234)
+.....+|++||.||+|+.++|+.... ..++.|+|||.+|+.+||++|||||||+
T Consensus 43 ----------------------~~~~~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~~~~~~~p~~gY~QGm~~ 97 (199)
T smart00164 43 ----------------------DKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMNF 97 (199)
T ss_pred ----------------------ChhhHHHHhcccCCCCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCCceeccHHH
Confidence 112468999999999999999987544 7999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHhHHhHhhccccch------hhhHHHHHHHHHHHHh-----------------h
Q 026703 161 ILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVST------LYNRNLLLYKLVFYRC-----------------Y 217 (234)
Q Consensus 161 i~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~~~~~------~~~~~~~~~~~~~~~~-----------------~ 217 (234)
|||+|+.++. +|++|||||..+|+.+.+.+ ++...+.+++.++... +
T Consensus 98 i~~~ll~~~~----------~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~ 167 (199)
T smart00164 98 LAAPLLLVMP----------DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSL 167 (199)
T ss_pred HHHHHHHhcC----------CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchh
Confidence 9999999874 48999999999998655432 2333344444433221 7
Q ss_pred hhhhhhHHHHhhhcc
Q 026703 218 FGGSYMPVVVAREIR 232 (234)
Q Consensus 218 f~~~w~~~l~~rel~ 232 (234)
|+++|++++|+|+||
T Consensus 168 ~~~~W~~~lF~~~~~ 182 (199)
T smart00164 168 YALRWFLTLFARELP 182 (199)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999999998
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-31 Score=227.59 Aligned_cols=178 Identities=29% Similarity=0.423 Sum_probs=152.7
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|||.. .|+.+|++++||+|+++....-+++.++.+|..++.++.......
T Consensus 187 ~Gvp~~--~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~--------------------------- 237 (484)
T KOG1092|consen 187 NGVPSK--MRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNG--------------------------- 237 (484)
T ss_pred CCCCcc--ccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCc---------------------------
Confidence 699999 999999999999999999999999999999999999887543210
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i 161 (234)
-.+..+.+||.-|+.|+.|..++|+.+ ..++.+.|||++|+.+||..||+||.|++
T Consensus 238 -------------------~~~~d~~rQI~id~prm~p~~~l~q~~-----~vq~~lerIl~iwairhpAsGyvqgindl 293 (484)
T KOG1092|consen 238 -------------------DEDQDTWRQIPIDIPRMNPHIPLFQQK-----IVQEMLERILYIWAIRHPASGYVQGINDL 293 (484)
T ss_pred -------------------cccCccccccccCCCCCCccccchhhH-----HHHHHHHHHHHHHHHhcccccccccceee
Confidence 012345789999999999999999988 89999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcc---------------cccchhhHHHHHhHHhH----hhccccch-hhhHHHHHHHHHHHHh-----
Q 026703 162 LAPLYYVFKSDPDE---------------EFSGFSFAFGARSFGGL----RTYYTVST-LYNRNLLLYKLVFYRC----- 216 (234)
Q Consensus 162 ~a~ll~~~~~e~~~---------------~~~~~~E~daf~~f~~l----~~~~~~~~-~~~~~~~~~~~~~~~~----- 216 (234)
+.|++.++..|... +....+|||+|||+..| +++|++++ |++..++-++.+..+.
T Consensus 294 vtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~h 373 (484)
T KOG1092|consen 294 VTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLH 373 (484)
T ss_pred echhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHH
Confidence 99999888765432 23578899999999765 46888888 7888887777776543
Q ss_pred -----------hhhhhhhHHHHhhhcc
Q 026703 217 -----------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 217 -----------~f~~~w~~~l~~rel~ 232 (234)
+|+||||.|||.||||
T Consensus 374 kHlq~~gveylQFAFRWmNcLLmRE~p 400 (484)
T KOG1092|consen 374 KHLQEHGVEYLQFAFRWMNCLLMREFP 400 (484)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHhhcc
Confidence 7999999999999998
No 4
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.8e-29 Score=219.11 Aligned_cols=116 Identities=21% Similarity=0.272 Sum_probs=98.7
Q ss_pred HHHHHhHHccCCCCCCC-ccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhH
Q 026703 105 EIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFA 183 (234)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~ 183 (234)
...++|+.|+.||+|++ +.|..+.+ .+...|+|||.|||.+||.||||||||++||++|+++.. |.
T Consensus 195 ~~~~qI~~DL~RTfP~n~~~~~~~~~---~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~----------EE 261 (436)
T KOG2058|consen 195 PVVKQIKLDLPRTFPDNFKGFDSEDS---DGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPS----------EE 261 (436)
T ss_pred hHHHHHHhccccccCCCcccCCCCCc---hHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCC----------hH
Confidence 46899999999999999 79988876 678999999999999999999999999999999999953 78
Q ss_pred HHHHhHHhHhhccccch------hhhHHHHHHHHHHHHh----------------hhhhhhhHHHHhhhccC
Q 026703 184 FGARSFGGLRTYYTVST------LYNRNLLLYKLVFYRC----------------YFGGSYMPVVVAREIRH 233 (234)
Q Consensus 184 daf~~f~~l~~~~~~~~------~~~~~~~~~~~~~~~~----------------~f~~~w~~~l~~rel~~ 233 (234)
+|||+|..+.++|.+.. +.+....+++.+++.. ++++.|++++|+.-+|+
T Consensus 262 ~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~ 333 (436)
T KOG2058|consen 262 DAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPS 333 (436)
T ss_pred HHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccH
Confidence 99999999988766663 3344456666666543 79999999999998885
No 5
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-29 Score=224.44 Aligned_cols=140 Identities=37% Similarity=0.732 Sum_probs=126.1
Q ss_pred CChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccccCCCCCC
Q 026703 9 GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHP 88 (234)
Q Consensus 9 ~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (234)
..|+.+|+++||++|.+.+.|...+++.+..|..+...+..+|+.... ..++....++|
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~---------------------~~s~d~~idnP 86 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKE---------------------NHSPDLPIDNP 86 (625)
T ss_pred hhhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCcccccc---------------------ccCCCcccCCc
Confidence 389999999999999999999999999999999998888888864211 02344567899
Q ss_pred CCCCCCCccccccCChHHHHHhHHccCCCCCCC-ccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHH
Q 026703 89 LSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYY 167 (234)
Q Consensus 89 ls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~ 167 (234)
||+.++|.|.++|+|.++...|++||.||+|.+ .+|+.+ ..+..|++||.+||..||.+||.|||++|.||+++
T Consensus 87 LSq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~-----~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~f 161 (625)
T KOG1091|consen 87 LSQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSP-----EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLF 161 (625)
T ss_pred cccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCc-----hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhh
Confidence 999999999999999999999999999999999 888887 89999999999999999999999999999999999
Q ss_pred HhcCCCc
Q 026703 168 VFKSDPD 174 (234)
Q Consensus 168 ~~~~e~~ 174 (234)
|+..+.+
T Consensus 162 Vl~~D~q 168 (625)
T KOG1091|consen 162 VLHVDNQ 168 (625)
T ss_pred heehhHH
Confidence 9977654
No 6
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=5.2e-28 Score=209.56 Aligned_cols=182 Identities=29% Similarity=0.517 Sum_probs=138.6
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcH--HHHHHHHHHHHHHHHHhcc--CchhhhhhcccccchhhhhhhhccCCcc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWP--SELAKKRSQYKHFKDDLLV--NPSEITRRLDKSTIYESEEWKCESSGFL 77 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~--~~l~~~r~~Y~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
+||... +|+.||++||.+|+..++... .....+|++|+++.++-+. .|.+..
T Consensus 434 ggid~s--ir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~---------------------- 489 (781)
T KOG2224|consen 434 GGIDKS--IRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHI---------------------- 489 (781)
T ss_pred ccchhh--hhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH----------------------
Confidence 688888 999999999999998877533 3456899999987654332 222110
Q ss_pred cccccCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCc
Q 026703 78 SRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQG 157 (234)
Q Consensus 78 ~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QG 157 (234)
..|+. +.-.++|||.||.++++||.++.. ++.+.++|||..||.|||.+||.||
T Consensus 490 -----------------~fwkn------vq~tvdkdvvrtdrnn~ff~gddn---pn~e~mk~illn~avyn~~m~ysqg 543 (781)
T KOG2224|consen 490 -----------------AFWKN------VQFTVDKDVVRTDRNNPFFCGDDN---PNTESMKNILLNFAVYNPAMGYSQG 543 (781)
T ss_pred -----------------HHHhh------eEEEEecceeeccCCCCcccCCCC---CcHHHHHHHHHhheeeccccccccc
Confidence 12321 233578999999999999999875 8999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCccccc------------------chhhHHHHHhHHhHhhc--c--ccch-hhhHHHHHHHHH--
Q 026703 158 MNEILAPLYYVFKSDPDEEFS------------------GFSFAFGARSFGGLRTY--Y--TVST-LYNRNLLLYKLV-- 212 (234)
Q Consensus 158 M~~i~a~ll~~~~~e~~~~~~------------------~~~E~daf~~f~~l~~~--~--~~~~-~~~~~~~~~~~~-- 212 (234)
|++++||.++-..+|++++|. ...|+|+||||++||++ | ++.. ....++..+..+
T Consensus 544 msdllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylrelir 623 (781)
T KOG2224|consen 544 MSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIR 623 (781)
T ss_pred chhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHH
Confidence 999999999999999998873 45689999999999985 2 2222 233333222222
Q ss_pred -----HHHh-----------hhhhhhhHHHHhhhccC
Q 026703 213 -----FYRC-----------YFGGSYMPVVVAREIRH 233 (234)
Q Consensus 213 -----~~~~-----------~f~~~w~~~l~~rel~~ 233 (234)
|.+. +||-||+++.|+||||.
T Consensus 624 i~~~~fykhl~q~~ed~lellfchrwlllcfkref~e 660 (781)
T KOG2224|consen 624 IMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPE 660 (781)
T ss_pred HhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccH
Confidence 2221 89999999999999984
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.93 E-value=5.5e-26 Score=208.62 Aligned_cols=160 Identities=28% Similarity=0.383 Sum_probs=122.2
Q ss_pred CCCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCccccc
Q 026703 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (234)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
++|||+. +|+.+|..++|+++.. ......|..+...+.....
T Consensus 210 ~~gip~~--~r~~vw~~~~~~~~~~--------~~~~~~y~~~~~~~~~~~~---------------------------- 251 (496)
T COG5210 210 RKGIPNE--LRGDVWEFLLGIGFDL--------DKNPGLYERLLNLHREAKI---------------------------- 251 (496)
T ss_pred HhcCChH--hhhhhHHHHhccchhh--------ccCchHHHHHHHHHHhcCC----------------------------
Confidence 3689999 9999999999998732 2244556655544322100
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhH
Q 026703 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (234)
Q Consensus 81 ~~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~ 160 (234)
.......+|++||.||+|.+..|+...+ ...+.|+|||.+|+.+||++|||||||+
T Consensus 252 ---------------------~~~~~~~~i~~Dl~rt~~~~~~f~~~~s---~~~~~L~rvL~ays~~~p~vgY~QgMn~ 307 (496)
T COG5210 252 ---------------------PTQEIISQIEKDLSRTFPDNSLFQTEIS---IRAENLRRVLKAYSLYNPEVGYVQGMNF 307 (496)
T ss_pred ---------------------CcHHHHHHHHccccccccccccccCccc---ccHHHHHHHHHHHHhcCCCCceeccHHH
Confidence 0013588999999999999999988754 3445699999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHhHHhHhh-ccccch------hhhHHHHHHHHHHHHh----------------h
Q 026703 161 ILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRT-YYTVST------LYNRNLLLYKLVFYRC----------------Y 217 (234)
Q Consensus 161 i~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~-~~~~~~------~~~~~~~~~~~~~~~~----------------~ 217 (234)
|+|+||.+|. .|++|||||+.|++ .+.++. +.......++.++... +
T Consensus 308 l~a~ll~~~~----------~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~ 377 (496)
T COG5210 308 LAAPLLLVLE----------SEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLM 377 (496)
T ss_pred HHHHHHHHhh----------hhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 9999999994 38899999999998 333333 5555555555544332 7
Q ss_pred hhhhhhHHHHhhhcc
Q 026703 218 FGGSYMPVVVAREIR 232 (234)
Q Consensus 218 f~~~w~~~l~~rel~ 232 (234)
|+++|++++|++++|
T Consensus 378 ~~~~w~l~lF~~~~p 392 (496)
T COG5210 378 FAFRWFLTLFVREFP 392 (496)
T ss_pred hhHHHHHHHHHhcCC
Confidence 999999999999998
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.89 E-value=1.3e-22 Score=166.14 Aligned_cols=114 Identities=31% Similarity=0.549 Sum_probs=89.5
Q ss_pred hHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhH
Q 026703 104 SEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFA 183 (234)
Q Consensus 104 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~ 183 (234)
.+..++|.+|+.||+++...+... ..++.|.+||.+|+..+|++||+|||++|++++++++ ..|+
T Consensus 44 ~~~~~~I~~Dv~rt~~~~~~~~~~-----~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~----------~~e~ 108 (214)
T PF00566_consen 44 NKIFEQIDKDVNRTFPNSFLFKNE-----QNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVF----------LDEE 108 (214)
T ss_dssp HTCHHHHHHHHCTSSTSCCCSTTH-----HHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTC----------SHHH
T ss_pred chHHHHHHHhhhhhcccchhhhhc-----chHHHHHHHHHHhccccccccccchhhhhhhhhhhhc----------cccc
Confidence 445899999999999955555555 8999999999999999999999999999999999766 3578
Q ss_pred HHHHhHHhHhh-----ccccch-hhhHHHHHHHHHHHHh----------------hhhhhhhHHHHhhhcc
Q 026703 184 FGARSFGGLRT-----YYTVST-LYNRNLLLYKLVFYRC----------------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 184 daf~~f~~l~~-----~~~~~~-~~~~~~~~~~~~~~~~----------------~f~~~w~~~l~~rel~ 232 (234)
+|||||+.++. .|.... ++.....+++.++... .|+++|+.++|++++|
T Consensus 109 ~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~ 179 (214)
T PF00566_consen 109 EAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLP 179 (214)
T ss_dssp HHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-
T ss_pred chhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCC
Confidence 89999999993 333332 3444445555554432 6999999999999997
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.87 E-value=2e-22 Score=174.79 Aligned_cols=111 Identities=20% Similarity=0.329 Sum_probs=91.1
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
..+|+.|+.||||+..+|+..+ +..+.|..||.+|++|.|+|||+|||++|+|+|++.|. +++||
T Consensus 356 v~~i~LDisrTfpsl~iFqk~G----Py~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd-----------~~~AF 420 (586)
T KOG2223|consen 356 VELIKLDISRTFPSLSIFQKGG----PYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD-----------LADAF 420 (586)
T ss_pred hhheeechhccCcceeeeccCC----chHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-----------cHHHH
Confidence 7899999999999999999876 89999999999999999999999999999999998884 78999
Q ss_pred HhHHhHhhc------cccch-hhhHHHHHHHHHHHH--------h--------hhhhhhhHHHHhhhcc
Q 026703 187 RSFGGLRTY------YTVST-LYNRNLLLYKLVFYR--------C--------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 187 ~~f~~l~~~------~~~~~-~~~~~~~~~~~~~~~--------~--------~f~~~w~~~l~~rel~ 232 (234)
.||.+|++. |+... .+..-...|+..|.. + +|.+.|+..|++.-||
T Consensus 421 iafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslp 489 (586)
T KOG2223|consen 421 IAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLP 489 (586)
T ss_pred HHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCC
Confidence 999998864 33333 223333333333322 1 7999999999999887
No 10
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-20 Score=171.72 Aligned_cols=113 Identities=23% Similarity=0.392 Sum_probs=92.6
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
...|.+||.||++.+.++.+... ++...|..||.+|+.+|+++||||||+++++|++.++.+ |.+||
T Consensus 238 ~~~i~~dv~rtDr~~~~~~~~~n---~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~d----------e~~aF 304 (488)
T KOG2197|consen 238 KSRIEKDVGRTDRSLEFYEGEEN---PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMED----------EVEAF 304 (488)
T ss_pred hhhhhhhccccchhhhhhhcccc---cCHHHHHHHHhhcccccCccccccCchhhcCcceeeecC----------chHHH
Confidence 46799999999999999998732 249999999999999999999999999999999999965 67899
Q ss_pred HhHHhHhhccccch-----hhhHHH-------HHHHHHHHHh---------hhhhhhhHHHHhhhcc
Q 026703 187 RSFGGLRTYYTVST-----LYNRNL-------LLYKLVFYRC---------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 187 ~~f~~l~~~~~~~~-----~~~~~~-------~~~~~~~~~~---------~f~~~w~~~l~~rel~ 232 (234)
|||+.+|+.-.++| +...++ +..|..+... .|||||+.+.|.|||.
T Consensus 305 wcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~ 371 (488)
T KOG2197|consen 305 WCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFE 371 (488)
T ss_pred HHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccc
Confidence 99999998755555 444444 3333444332 8999999999999985
No 11
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.78 E-value=8.7e-19 Score=154.01 Aligned_cols=153 Identities=21% Similarity=0.241 Sum_probs=117.3
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|||.. +|+..|+-|.|.+.. .......|+..++.+..+
T Consensus 169 ggiphs--lr~~lw~rlsga~~k--------kk~ae~sy~~ilk~~and------------------------------- 207 (848)
T KOG2222|consen 169 GGIPHS--LRAFLWMRLSGALAK--------KKDAETSYEDILKACAND------------------------------- 207 (848)
T ss_pred CCCCcc--hhHHHHHHhhhhhhh--------hccccccHHHHHHHhccc-------------------------------
Confidence 689999 999999999998552 222335677776655321
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i 161 (234)
...+-.||++|+.|+.|++..|...++ .+.+.|+|||.+.|..-|++||||||.-|
T Consensus 208 ---------------------k~~~~~qiekdllr~lpnn~cf~k~n~---~gi~~lrrilk~ia~ifpdigycqg~gvi 263 (848)
T KOG2222|consen 208 ---------------------KLMIGKQIEKDLLRILPNNACFSKKNG---EGIEALRRILKCIAFIFPDIGYCQGMGVI 263 (848)
T ss_pred ---------------------ccchhHHHHHHHHHhCCCcceeeCCCC---cchHHHHHHHhhheeecCCcccccCccHH
Confidence 122467999999999999999999888 99999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHhHHhHhhccccch-------hhhHHHHHHHHHHHH-----------h-----hh
Q 026703 162 LAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVST-------LYNRNLLLYKLVFYR-----------C-----YF 218 (234)
Q Consensus 162 ~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~~~~~-------~~~~~~~~~~~~~~~-----------~-----~f 218 (234)
+|.+++.+. |+.+||....+.+...|.. +++-.-.++..+... . +-
T Consensus 264 va~lllf~~-----------ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielsli 332 (848)
T KOG2222|consen 264 VACLLLFCE-----------EENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLI 332 (848)
T ss_pred HHHHHHHhc-----------chhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeeh
Confidence 999998884 6789999998877554433 223222333333322 1 67
Q ss_pred hhhhhHHHHhhh
Q 026703 219 GGSYMPVVVARE 230 (234)
Q Consensus 219 ~~~w~~~l~~re 230 (234)
...|+++||+--
T Consensus 333 tl~w~ltlf~nv 344 (848)
T KOG2222|consen 333 TLHWFLTLFANV 344 (848)
T ss_pred HHHHHHHHHHHH
Confidence 899999999754
No 12
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.65 E-value=1.6e-16 Score=144.28 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=119.9
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
.|||++ .|++.|.++.|... .+..+...|..+++.....
T Consensus 201 ~gipe~--~rgeiW~l~sGav~--------~~l~~~Geygkll~~~~G~------------------------------- 239 (671)
T KOG4347|consen 201 NGFPED--PRGEIWYLASGAVA--------SLLLNPGEYGKLLHSVTGK------------------------------- 239 (671)
T ss_pred HhcCCC--hHHHHHHhhhHHHH--------HhhcCcHHhhhhhhcccCC-------------------------------
Confidence 699999 99999999999743 4445567888766543210
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i 161 (234)
.....+.|++|+.|..|.++-|+.+ .+...|+|||.+|+..||+|||||-||-+
T Consensus 240 ---------------------~~~a~eEIE~Dl~rsLpEhpA~Q~e-----~gi~aLR~vL~Aya~~Np~vGYcQaMNIV 293 (671)
T KOG4347|consen 240 ---------------------RSVATEEIEPDLGRSLPEHPAFQSE-----PGIAALRRVLTAYAWSNPEVGYCQAMNIV 293 (671)
T ss_pred ---------------------cccccccccCCCCCCCCcchhhhCC-----CchhhHHHHHHhhhccCCchhHHHHHHHH
Confidence 1223568999999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHhHHhHhhccccch------hhhHHHHHHHHHHHHh---------------hhhh
Q 026703 162 LAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYYTVST------LYNRNLLLYKLVFYRC---------------YFGG 220 (234)
Q Consensus 162 ~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~~~~~------~~~~~~~~~~~~~~~~---------------~f~~ 220 (234)
++.+++.+. |+++||+++.+.+.|.++. +......+|..+..+. +=+.
T Consensus 294 ~s~lll~~~-----------EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~~l~~Vsl 362 (671)
T KOG4347|consen 294 GSELLLFCK-----------EEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLGQLSTVSL 362 (671)
T ss_pred HHhhhhhhc-----------cchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhcccceEee
Confidence 999998874 6789999998877666655 3344455677766554 4578
Q ss_pred hhhHHHHhhhcc
Q 026703 221 SYMPVVVAREIR 232 (234)
Q Consensus 221 ~w~~~l~~rel~ 232 (234)
.|++.||.--.|
T Consensus 363 ~WFlslFls~m~ 374 (671)
T KOG4347|consen 363 SWFLSLFLSLMP 374 (671)
T ss_pred HHHHHHHHHHcc
Confidence 899988876544
No 13
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1e-15 Score=122.78 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=82.1
Q ss_pred hHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhH
Q 026703 104 SEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFA 183 (234)
Q Consensus 104 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~ 183 (234)
..+.+.|.+|++|-||.+..|..... .+++.|.|+|.+|.+++|+.||||+-..|+|++++.+. +.
T Consensus 140 p~t~e~i~kdl~rqfp~hemf~s~~k---~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-----------~r 205 (267)
T KOG2221|consen 140 PKTAEGIHKDLHRQFPFHEMFGSSGK---TGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-----------AR 205 (267)
T ss_pred CcchhhhccccccCCCcccccccccc---cchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-----------HH
Confidence 44578999999999999999988765 78999999999999999999999999999999999986 67
Q ss_pred HHHHhHHhHhhccccch------hhhHHHHHHHHHHHH
Q 026703 184 FGARSFGGLRTYYTVST------LYNRNLLLYKLVFYR 215 (234)
Q Consensus 184 daf~~f~~l~~~~~~~~------~~~~~~~~~~~~~~~ 215 (234)
|+||||+.+.+.|.++. .++..-.|+..++++
T Consensus 206 daf~~~vqicekylqgy~~sgleaiq~dg~il~~Llkk 243 (267)
T KOG2221|consen 206 DAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEGLLKK 243 (267)
T ss_pred HHHHHHHHHHHHHcccccccchhhhhcccHHHHHHHHh
Confidence 99999999988877766 223333555555554
No 14
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.63 E-value=2.5e-16 Score=140.57 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=93.7
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
..+| +|+.||+|.+..|....+ ..++.+.+||.+|+.++|++||||||..++++++.++. |++||
T Consensus 186 ~~~~-~d~~Rt~~~~~~f~~~~~---~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-----------ee~af 250 (397)
T KOG1102|consen 186 SEII-RDLSRTFPAHLLFRKRYG---VGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-----------EEEAF 250 (397)
T ss_pred hHHH-hhccCcCcchhhhhhhcC---cccccccccchhhcccCCCcccccchhhHhhhhhccCc-----------hhhhh
Confidence 3566 999999999999988655 88999999999999999999999999999999998884 77999
Q ss_pred HhHHhHhhcc-----ccch-hhhHHHHHHHHHHHHh----------------hhhhhhhHHHHhhhcc
Q 026703 187 RSFGGLRTYY-----TVST-LYNRNLLLYKLVFYRC----------------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 187 ~~f~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~----------------~f~~~w~~~l~~rel~ 232 (234)
+.++.+|..+ ..++ ++......++.++... +|+..|++++|+-.+|
T Consensus 251 ~~lv~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p 318 (397)
T KOG1102|consen 251 PLLVKLMKNYGLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFP 318 (397)
T ss_pred hhhhhhhhccchhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeecccc
Confidence 9999999988 6666 5556666666665432 7999999999987665
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.62 E-value=1.6e-15 Score=140.22 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=95.3
Q ss_pred HHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHH
Q 026703 105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAF 184 (234)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~d 184 (234)
+..+.|..|+-||||++++|...-+ .++..+.++|.+|+..+|++|||||.+++||+||++|. |+.
T Consensus 620 e~qhAi~idlgrtfp~h~~~~~qlg---~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-----------e~~ 685 (948)
T KOG4436|consen 620 EQQHAILIDLGRTFPTHPYFSDQLG---LGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-----------EEN 685 (948)
T ss_pred HHHHHHHHhhccccCCCHHHHhhcc---ccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-----------hhh
Confidence 3467899999999999999998766 89999999999999999999999999999999999984 778
Q ss_pred HHHhHHhHh------hccccch-hhhHHHHHHHHHHHHh----------------hhhhhhhHHHHhhhcc
Q 026703 185 GARSFGGLR------TYYTVST-LYNRNLLLYKLVFYRC----------------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 185 af~~f~~l~------~~~~~~~-~~~~~~~~~~~~~~~~----------------~f~~~w~~~l~~rel~ 232 (234)
||-++.-|| ..|.+.+ .++..+..+..+..+. +++..|++.+|+-.||
T Consensus 686 afellk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~ 756 (948)
T KOG4436|consen 686 AFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFP 756 (948)
T ss_pred HHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCc
Confidence 887765554 4688877 5566665555555532 7999999999998886
No 16
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.53 E-value=2.3e-14 Score=128.84 Aligned_cols=112 Identities=15% Similarity=0.278 Sum_probs=92.0
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
.+||+.|++|+.....+...+ .+.+.|+|+|++|+.++|...|.||...+++||++...+ .|.-||
T Consensus 391 drqievdiprchQyd~~lsSp-----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~N---------ne~laF 456 (725)
T KOG1093|consen 391 DRQIEVDIPRCHQYDELLSSP-----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFN---------NELLAF 456 (725)
T ss_pred hhhhhcccchhhhcccccCCH-----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcC---------chHHHH
Confidence 579999999999888888777 899999999999999999999999999999999988853 478899
Q ss_pred HhHHhHhhccccchhhh-------HHHHHHHHHHH----------------HhhhhhhhhHHHHhhhcc
Q 026703 187 RSFGGLRTYYTVSTLYN-------RNLLLYKLVFY----------------RCYFGGSYMPVVVAREIR 232 (234)
Q Consensus 187 ~~f~~l~~~~~~~~~~~-------~~~~~~~~~~~----------------~~~f~~~w~~~l~~rel~ 232 (234)
-|+..+.-+|-..+.++ +.+.++..+.. ..+||+.|+++.|+.+||
T Consensus 457 ~~~~~fi~kycq~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlp 525 (725)
T KOG1093|consen 457 ACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLP 525 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc
Confidence 99988877766666433 23334433321 118999999999999998
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.3e-09 Score=93.09 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=71.5
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
..|+..|+.|++...+.-.... .....+..|..++..--..+|+..|-||.||||..|++++. |.+|+
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~~-~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-----------E~~Al 164 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPKE-LRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-----------ELEAL 164 (395)
T ss_pred cceEEEehhhhhccCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-----------hHhhh
Confidence 5689999999985543211110 00134555655555555777999999999999999999984 55666
Q ss_pred HhHHhHhhccccch------hhhHHHHHHHHHHHH---------------hhhhhhhhHHHHhhhccC
Q 026703 187 RSFGGLRTYYTVST------LYNRNLLLYKLVFYR---------------CYFGGSYMPVVVAREIRH 233 (234)
Q Consensus 187 ~~f~~l~~~~~~~~------~~~~~~~~~~~~~~~---------------~~f~~~w~~~l~~rel~~ 233 (234)
-+.+.|-..+..++ ...+.+++.-.+... ++|+..|+++-|++.|..
T Consensus 165 ~l~E~L~~~~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgtlFaLsWllTWFaH~L~~ 232 (395)
T KOG2595|consen 165 SLMEELSTLHLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGTLFALSWLLTWFAHNLKD 232 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccceehhhHHHHHHhhcchh
Confidence 55554443322222 122333322222221 289999999999988753
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.70 E-value=1e-07 Score=89.22 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=90.6
Q ss_pred hHHHHHhHHccCCCCCCCccCCCCCCcc----hhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccc
Q 026703 104 SEIMEQIDRDVKRTHPDMHFFSGDSSFA----TSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSG 179 (234)
Q Consensus 104 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~----~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~ 179 (234)
.-+...|..|+.||.|.+.+|....+.+ .-.++.|+++..+|....-++|||||-++|+|.+++.+.
T Consensus 225 ~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~--------- 295 (948)
T KOG4436|consen 225 ELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP--------- 295 (948)
T ss_pred hHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc---------
Confidence 3457789999999999999999875421 126999999999999999999999999999999998885
Q ss_pred hhhHHHHHhHHhHhhccccchhhhHHH---------------HHH-HHHHHHh--------hhhhhhhHHHHhhhccC
Q 026703 180 FSFAFGARSFGGLRTYYTVSTLYNRNL---------------LLY-KLVFYRC--------YFGGSYMPVVVAREIRH 233 (234)
Q Consensus 180 ~~E~daf~~f~~l~~~~~~~~~~~~~~---------------~~~-~~~~~~~--------~f~~~w~~~l~~rel~~ 233 (234)
+..+|..++.+|..|+.....+... .+. ..++.++ +++-.|++..|.-.+|-
T Consensus 296 --~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi 371 (948)
T KOG4436|consen 296 --VEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPI 371 (948)
T ss_pred --HHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCch
Confidence 5678999999998876655332211 111 1222222 68889999998877763
No 19
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.68 E-value=1.1e-06 Score=78.66 Aligned_cols=110 Identities=23% Similarity=0.378 Sum_probs=77.0
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
...|++|+.|...+..+|.+. .+.+. +++.++|...|-+-||.|||.++.+|++..+.++.. ..
T Consensus 607 ~~~~~kd~e~~~~~~~~fs~~-----~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~----------~~ 670 (813)
T KOG1648|consen 607 LHRIDKDVERCDRNLMFFSNK-----DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEAL----------TL 670 (813)
T ss_pred eeeecchhhhCcchheeecCC-----cchhh-heeeeeeeccccccccccchhhccCCcCCChhhccc----------cc
Confidence 467999999999999999887 66666 889999999999999999999999999977755432 22
Q ss_pred HhHHhHhh----ccc--cch--h-h-hHHHHHHHHHHHH----hhhhhhhhHHHHhhhcc
Q 026703 187 RSFGGLRT----YYT--VST--L-Y-NRNLLLYKLVFYR----CYFGGSYMPVVVAREIR 232 (234)
Q Consensus 187 ~~f~~l~~----~~~--~~~--~-~-~~~~~~~~~~~~~----~~f~~~w~~~l~~rel~ 232 (234)
-||.-+|- +|. +++ . . ..++++-+-+..+ .-.+|+|++.-|.||+.
T Consensus 671 e~~s~~~~~q~~~~~q~~~~~~~l~~~r~~~v~~~l~s~id~~qa~~f~~~~~~~~~~~s 730 (813)
T KOG1648|consen 671 ECFSLLMLRQRGKFPQRPGMSKCLLNLRLIQVVDPLISDIDYAQALSFRWFLLDFKRELS 730 (813)
T ss_pred CCCcHHHHHhcccCCCCCCcccccccccchhhhcchhcchhhhhhcceeeeccCcccccC
Confidence 35544432 232 122 1 1 1233444433332 24679999999999974
No 20
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=94.68 E-value=0.16 Score=45.61 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=42.4
Q ss_pred ChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhC----CCCCCcCchhHHHHHHHHHhcCCCccccc
Q 026703 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLN----PGIRYVQGMNEILAPLYYVFKSDPDEEFS 178 (234)
Q Consensus 103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~----p~vgY~QGM~~i~a~ll~~~~~e~~~~~~ 178 (234)
+.+.++.|-....-..|...+-++- ...|..||.--.... .-||..|||++++||++.-..+|++++|.
T Consensus 520 n~e~mk~illn~avyn~~m~ysqgm-------sdllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwc 592 (781)
T KOG2224|consen 520 NTESMKNILLNFAVYNPAMGYSQGM-------SDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWC 592 (781)
T ss_pred cHHHHHHHHHhheeecccccccccc-------hhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhh
Confidence 5677777776544433333333222 223333332111111 13789999999999999999999999885
Q ss_pred c
Q 026703 179 G 179 (234)
Q Consensus 179 ~ 179 (234)
.
T Consensus 593 f 593 (781)
T KOG2224|consen 593 F 593 (781)
T ss_pred h
Confidence 3
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=90.19 E-value=0.73 Score=41.83 Aligned_cols=109 Identities=13% Similarity=0.209 Sum_probs=68.5
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhH--HHHHHHHHhcCCCcccccchhhHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE--ILAPLYYVFKSDPDEEFSGFSFAF 184 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~--i~a~ll~~~~~e~~~~~~~~~E~d 184 (234)
..+|++|..|.-....-=..... +....|..++.-||+.. ++.|.....- |+-||+..-. .-+|
T Consensus 67 Q~~lr~DC~~~~d~l~n~ee~~v---~vv~dlES~iTfYCK~R-n~~Y~~d~gWi~lL~pl~~L~l----------prsd 132 (669)
T KOG3636|consen 67 QCALRNDCRKLADGLKNKEEDKV---PVVSDLESFITFYCKKR-NMDYIKDIGWITLLEPLLLLNL----------PRSD 132 (669)
T ss_pred hhHHHHHHHHHHhhcCCchhhcc---chhHhhhhHhhhhhhcc-CCcccccccHHHHHHHHHHhcC----------Ccch
Confidence 45788887665322111011001 34557888888887654 6788765444 4555554432 3478
Q ss_pred HHHhHHhHhhccccch--hhhHHHHHHHHHHHHh----------------hhhhhhhHHHHhh
Q 026703 185 GARSFGGLRTYYTVST--LYNRNLLLYKLVFYRC----------------YFGGSYMPVVVAR 229 (234)
Q Consensus 185 af~~f~~l~~~~~~~~--~~~~~~~~~~~~~~~~----------------~f~~~w~~~l~~r 229 (234)
.|-||.++++.|.|.. .-...+.+|+.++.-. +|+..|+..||+-
T Consensus 133 ~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas 195 (669)
T KOG3636|consen 133 EFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFAS 195 (669)
T ss_pred hhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHH
Confidence 9999999999998876 2233445555554421 8999999999974
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.12 E-value=10 Score=32.66 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCC
Q 026703 133 SNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDP 173 (234)
Q Consensus 133 ~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~ 173 (234)
.+....+.||.+.+..-|++++|..+-.++|.++..-.+|.
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysidea 149 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEA 149 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHH
Confidence 45567889999999999999999999999999887765543
No 23
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=32.27 E-value=34 Score=18.29 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=10.3
Q ss_pred CCCcCchhHHHHHHH
Q 026703 152 IRYVQGMNEILAPLY 166 (234)
Q Consensus 152 vgY~QGM~~i~a~ll 166 (234)
.||.||+-+.+--.+
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999877654433
No 24
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=71 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.1
Q ss_pred CcCchhHHHHHHHHHhc
Q 026703 154 YVQGMNEILAPLYYVFK 170 (234)
Q Consensus 154 Y~QGM~~i~a~ll~~~~ 170 (234)
|.||+++-.+.+.--+.
T Consensus 51 YNQGi~da~a~i~ekl~ 67 (82)
T COG5460 51 YNQGIKDARAVIEEKLA 67 (82)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 78999999998886663
No 25
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=21.75 E-value=58 Score=19.52 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=6.0
Q ss_pred hHHHHhhhccCC
Q 026703 223 MPVVVAREIRHF 234 (234)
Q Consensus 223 ~~~l~~rel~~~ 234 (234)
+..|+..|||||
T Consensus 30 lk~Ll~~Elp~f 41 (44)
T PF01023_consen 30 LKELLEKELPNF 41 (44)
T ss_dssp HHHHHHHHSTTT
T ss_pred HHHHHHHHHHHH
Confidence 334445566654
Done!