Query 026703
Match_columns 234
No_of_seqs 172 out of 1650
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 8.8E-37 3E-41 271.7 14.4 176 2-232 32-246 (396)
2 2qfz_A TBC1 domain family memb 100.0 1.2E-36 4.1E-41 266.4 12.2 176 2-232 49-259 (345)
3 2qq8_A TBC1 domain family memb 100.0 7.6E-34 2.6E-38 247.6 9.8 173 2-232 47-243 (334)
4 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.1E-31 7.3E-36 229.9 15.0 150 2-232 32-204 (310)
5 3qye_A TBC1 domain family memb 100.0 1.2E-32 4E-37 239.8 4.5 112 107-232 104-238 (331)
6 4hl4_A TBC1 domain family memb 100.0 1.5E-29 5.2E-34 216.6 5.6 115 107-233 83-218 (292)
7 3qwl_A TBC1 domain family memb 99.8 1.5E-20 5.2E-25 160.4 3.0 42 3-46 51-92 (294)
8 1erd_A Pheromone ER-2; NMR {Eu 48.7 2.2 7.6E-05 23.3 -0.9 15 146-160 11-25 (40)
9 2js3_A Uncharacterized protein 24.5 23 0.00078 23.3 0.8 11 153-163 17-27 (96)
10 1v2z_A Circadian clock protein 20.8 86 0.0029 21.7 3.1 40 18-59 5-44 (111)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=8.8e-37 Score=271.65 Aligned_cols=176 Identities=26% Similarity=0.359 Sum_probs=145.2
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|||+. +|+.||++|||++|.+.+.|...+++++..|.++++++.....
T Consensus 32 ~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~----------------------------- 80 (396)
T 1fkm_A 32 NGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH----------------------------- 80 (396)
T ss_dssp TCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC-----------------------------
T ss_pred cCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccC-----------------------------
Confidence 699999 9999999999999999999999999999999999988753100
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i 161 (234)
..+.+..++|++||.||+|++++|+.+ .+++.|+|||.+|+.+||++|||||||+|
T Consensus 81 -------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~rIL~aya~~np~iGY~QGmn~i 136 (396)
T 1fkm_A 81 -------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGINDL 136 (396)
T ss_dssp -------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred -------------------cccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHHHHHHHHHHCCCCCcccCcHHH
Confidence 123567899999999999999999986 89999999999999999999999999999
Q ss_pred HHHHHHHhcCCCc------------------ccccchhhHHHHHhHHhHhhcc----ccch-hhhHHHHHHHHHHHHh--
Q 026703 162 LAPLYYVFKSDPD------------------EEFSGFSFAFGARSFGGLRTYY----TVST-LYNRNLLLYKLVFYRC-- 216 (234)
Q Consensus 162 ~a~ll~~~~~e~~------------------~~~~~~~E~daf~~f~~l~~~~----~~~~-~~~~~~~~~~~~~~~~-- 216 (234)
||+||+++..+.. ..+...+|++|||||+.||+.+ .+++ ++...+.+++.++...
T Consensus 137 ~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP 216 (396)
T 1fkm_A 137 VTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDA 216 (396)
T ss_dssp HHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Confidence 9999998854321 1122345999999999998754 4433 5555666666665543
Q ss_pred --------------hhhhhhhHHHHhhhcc
Q 026703 217 --------------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 217 --------------~f~~~w~~~l~~rel~ 232 (234)
+|+++|++++|+||||
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p 246 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQ 246 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSC
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCC
Confidence 7999999999999998
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.2e-36 Score=266.40 Aligned_cols=176 Identities=24% Similarity=0.376 Sum_probs=141.9
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|||+. +|+.||++|||++|.+.+.|...+++++..|.++++++...+..
T Consensus 49 ~GiP~~--~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~---------------------------- 98 (345)
T 2qfz_A 49 SGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRND---------------------------- 98 (345)
T ss_dssp TCCCGG--GHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred CCCCHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc----------------------------
Confidence 699999 99999999999999999999999999999999999887542100
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i 161 (234)
..+.+..++|++||.||+|+ ++|+.+ ..++.|+|||.+|+.+||++|||||||+|
T Consensus 99 -------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~-----~~~~~L~rIL~~ya~~~p~vgY~QGm~~i 153 (345)
T 2qfz_A 99 -------------------EVHQDTYRQIHIDIPRMSPE-ALILQP-----KVTEIFERILFIWAIRHPASGYVQGINDL 153 (345)
T ss_dssp ---------------------CHHHHHHHHHHGGGCSCH-HHHTSH-----HHHHHHHHHHHHHHHHCTTTCCCTTHHHH
T ss_pred -------------------cchHHHHHHHHHhCcccCCc-cccCCc-----hHHHHHHHHHHHHHHHCCCCCcccChHHH
Confidence 01345689999999999999 999886 78999999999999999999999999999
Q ss_pred HHHHHHHhcCCCc--------------ccccchhhHHHHHhHHhHhhcc----ccch-hhhHHHHHHHHHHHHh------
Q 026703 162 LAPLYYVFKSDPD--------------EEFSGFSFAFGARSFGGLRTYY----TVST-LYNRNLLLYKLVFYRC------ 216 (234)
Q Consensus 162 ~a~ll~~~~~e~~--------------~~~~~~~E~daf~~f~~l~~~~----~~~~-~~~~~~~~~~~~~~~~------ 216 (234)
||||++++..+.. .......|++|||||+.+|+.+ .+++ ++...+.+++.++...
T Consensus 154 ~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~ 233 (345)
T 2qfz_A 154 VTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHR 233 (345)
T ss_dssp HHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998854211 0112346999999999998754 4333 5555566666665543
Q ss_pred ----------hhhhhhhHHHHhhhcc
Q 026703 217 ----------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 217 ----------~f~~~w~~~l~~rel~ 232 (234)
+|+++|++++|+||||
T Consensus 234 hL~~~~i~~~~f~~~W~~~lF~~~~p 259 (345)
T 2qfz_A 234 HLDQHEVRYLQFAFRWMNNLLMREVP 259 (345)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTTTTSC
T ss_pred HHHHcCCchhhHHHHHHHHHHcccCC
Confidence 7999999999999998
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=247.64 Aligned_cols=173 Identities=21% Similarity=0.339 Sum_probs=120.1
Q ss_pred CCCCCCCCChHHHHHHhhCcCC-CCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLP-PDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~-~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
+|||+. +|+.||++++|+.. .+...+...+++.++.|.++......
T Consensus 47 ~GIP~~--lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~------------------------------- 93 (334)
T 2qq8_A 47 QGIPPS--VRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSE------------------------------- 93 (334)
T ss_dssp TCCCHH--HHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------------------------
T ss_pred CCCCHH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence 699999 99999999999853 22223444444555555543322110
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhH
Q 026703 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (234)
Q Consensus 81 ~~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~ 160 (234)
.+.++.|++.. .+.+..++|++||.||+|++++|+..+ .+++.|+|||.+|+.+||++|||||||+
T Consensus 94 -~~~~d~~~~~~---------~~~~~~~~I~~Dv~RT~p~~~~F~~~~----~~~~~L~rIL~aya~~~p~vgY~QGm~~ 159 (334)
T 2qq8_A 94 -VENEDAGFSAA---------DREASLELIKLDISRTFPNLCIFQQGG----PYHDMLHSILGAYTCYRPDVGYVQGMSF 159 (334)
T ss_dssp -----------------------CCHHHHHHHHHHTSSGGGCSSSTTS----TTHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred -Ccccccccccc---------cchhHHHHHHHHHhhcCCCchhhcCCC----chHHHHHHHHHHHHHhCCCCCcchhHHH
Confidence 01112222211 123467999999999999999998753 6889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHhHHhHhhcc------ccch-hhhHHHHHHHHHHHHh----------------h
Q 026703 161 ILAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYY------TVST-LYNRNLLLYKLVFYRC----------------Y 217 (234)
Q Consensus 161 i~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~------~~~~-~~~~~~~~~~~~~~~~----------------~ 217 (234)
|||+|++++ .|++|||||+.||+.+ .++. ++...+.+++.++... +
T Consensus 160 iaa~lLl~~-----------~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~ 228 (334)
T 2qq8_A 160 IAAVLILNL-----------DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDI 228 (334)
T ss_dssp HHHHHHHHS-----------CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGG
T ss_pred HHHHHHhcC-----------CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccc
Confidence 999999887 3899999999998643 3333 3444445555554432 7
Q ss_pred hhhhhhHHHHhhhcc
Q 026703 218 FGGSYMPVVVAREIR 232 (234)
Q Consensus 218 f~~~w~~~l~~rel~ 232 (234)
|+++|++++|+++||
T Consensus 229 ~~~~W~ltlF~~~lp 243 (334)
T 2qq8_A 229 YLIDWIFTLYSKSLP 243 (334)
T ss_dssp THHHHHHTTTTTTSC
T ss_pred hHHHHHHHHhcccCC
Confidence 999999999999998
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=229.88 Aligned_cols=150 Identities=18% Similarity=0.280 Sum_probs=119.9
Q ss_pred CCCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcccccchhhhhhhhccCCcccccc
Q 026703 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (234)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|||+. +|+.||+.|+|+.+. ...++.|.+++++.
T Consensus 32 ~GIP~~--lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~---------------------------------- 66 (310)
T 3hzj_A 32 SGVPEA--LRAEVWQLLAGCHDN---------QAMLDRYRILITKD---------------------------------- 66 (310)
T ss_dssp HCCCGG--GHHHHHHHHTTCCCC---------HHHHHHHHHHTTSC----------------------------------
T ss_pred CCCCHH--HHHHHHHHHHCCCcc---------hhHHHHHHHHHhcc----------------------------------
Confidence 599999 999999999999762 23446677654210
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHH
Q 026703 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (234)
Q Consensus 82 ~~~~~~pls~~~~s~w~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i 161 (234)
....++|++||.||+|++++|...++ .+++.|+|||.+|+.+||++|||||||+|
T Consensus 67 ----------------------~~~~~~I~~Dv~Rt~p~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i 121 (310)
T 3hzj_A 67 ----------------------SAQESVITRDIHRTFPAHDYFKDTGG---DGQESLYKICKAYSVYDEDIGYCQGQSFL 121 (310)
T ss_dssp ----------------------CTTHHHHHHHHTTSSTTSTTTSSTTS---HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred ----------------------CCcHHHHHHHHHhhCCCchhhcCCCc---hhHHHHHHHHHHHHHHCCCCCccCCHHHH
Confidence 01257999999999999999998765 79999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHhHHhHhhcc------ccch-hhhHHHHHHHHHHHHh----------------hh
Q 026703 162 LAPLYYVFKSDPDEEFSGFSFAFGARSFGGLRTYY------TVST-LYNRNLLLYKLVFYRC----------------YF 218 (234)
Q Consensus 162 ~a~ll~~~~~e~~~~~~~~~E~daf~~f~~l~~~~------~~~~-~~~~~~~~~~~~~~~~----------------~f 218 (234)
||+|++++ .|++|||||+.+|..+ .+++ ++...+.+++.++... +|
T Consensus 122 aa~lL~~~-----------~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~ 190 (310)
T 3hzj_A 122 AAVLLLHM-----------PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMY 190 (310)
T ss_dssp HHHHHHHS-----------CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHhC-----------CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHH
Confidence 99999998 3889999999998654 2332 3344444555554432 79
Q ss_pred hhhhhHHHHhhhcc
Q 026703 219 GGSYMPVVVAREIR 232 (234)
Q Consensus 219 ~~~w~~~l~~rel~ 232 (234)
+++|++++|+++||
T Consensus 191 ~~~W~ltlF~~~lp 204 (310)
T 3hzj_A 191 ASQWFLTLFTAKFP 204 (310)
T ss_dssp SHHHHHHTTTTTSC
T ss_pred HHHHHHHHHhccCC
Confidence 99999999999998
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.97 E-value=1.2e-32 Score=239.76 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=94.6
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
.++|++||.||+|++++|....+ .+++.|+|||.+|+.+||++|||||||+|||+|++++. |++||
T Consensus 104 ~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~-----------E~~aF 169 (331)
T 3qye_A 104 QHAILIDLGRTFPTHPYFSAQLG---AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-----------EEEAF 169 (331)
T ss_dssp HHHHHHHHTTSSTTSTTTCSTTC---HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC-----------HHHHH
T ss_pred hhHHHHhhcccCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh-----------HHHHH
Confidence 57999999999999999998766 89999999999999999999999999999999998873 88999
Q ss_pred HhHHhHhhc------cccch-hhhHHHHHHHHHHHHh----------------hhhhhhhHHHHhhhcc
Q 026703 187 RSFGGLRTY------YTVST-LYNRNLLLYKLVFYRC----------------YFGGSYMPVVVAREIR 232 (234)
Q Consensus 187 ~~f~~l~~~------~~~~~-~~~~~~~~~~~~~~~~----------------~f~~~w~~~l~~rel~ 232 (234)
|||+.+|+. |.+++ ++...+..++.++... +|+++|++++|+++||
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 999998864 44444 4445555555554432 7999999999999998
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.95 E-value=1.5e-29 Score=216.64 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=90.4
Q ss_pred HHHhHHccCCCCCCCccCCCCCCcchhHHHHHHHHHHHHHhhCCCCCCcCchhHHHHHHHHHhcCCCcccccchhhHHHH
Q 026703 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSGFSFAFGA 186 (234)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~l~~IL~~y~~~~p~vgY~QGM~~i~a~ll~~~~~e~~~~~~~~~E~daf 186 (234)
.++|++||.||+|.++.|..... ....++.|.|||.+|+.+||++|||||||+|||+|++++ .|++||
T Consensus 83 ~~qI~~Dv~RT~~~~~~~~~~~~-~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-----------~e~~aF 150 (292)
T 4hl4_A 83 YQQVLLDVRRSLRRFPPGMPEEQ-REGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-----------GERLAT 150 (292)
T ss_dssp HHHHHHHHHTTGGGSCTTSCHHH-HHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-----------CHHHHH
T ss_pred HHHHHHhhhhhhhhccCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-----------CHHHHH
Confidence 68999999999999888764210 015678899999999999999999999999999999887 389999
Q ss_pred HhHHhHhhcc-----ccch-hhhHHHHHHHHHHHHh---------------hhhhhhhHHHHhhhccC
Q 026703 187 RSFGGLRTYY-----TVST-LYNRNLLLYKLVFYRC---------------YFGGSYMPVVVAREIRH 233 (234)
Q Consensus 187 ~~f~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~---------------~f~~~w~~~l~~rel~~ 233 (234)
|||+.+|+++ .+++ +....+.+++.++... +|+++|++++|++++|+
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~~~~~~~W~ltlF~~~l~~ 218 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSD 218 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCCSGGGHHHHHTTTTTTSCC
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCcchHHHHHHHHHhhhcCc
Confidence 9999998754 3333 3334444444443322 79999999999999974
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.79 E-value=1.5e-20 Score=160.44 Aligned_cols=42 Identities=29% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCCCCChHHHHHHhhCcCCCCCCCcHHHHHHHHHHHHHHHHH
Q 026703 3 GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDD 46 (234)
Q Consensus 3 Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~ 46 (234)
|||+. +|+.||++|||++|.+++.|..+++++|++|+++++.
T Consensus 51 ~IP~~--~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~ 92 (294)
T 3qwl_A 51 PLPSM--YRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA 92 (294)
T ss_dssp CCCHH--HHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 49999 9999999999999999999999999999999998876
No 8
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=48.75 E-value=2.2 Score=23.29 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=10.4
Q ss_pred HhhCCCCCCcCchhH
Q 026703 146 AKLNPGIRYVQGMNE 160 (234)
Q Consensus 146 ~~~~p~vgY~QGM~~ 160 (234)
+..|.-.|||||--.
T Consensus 11 scehtmcgycqgply 25 (40)
T 1erd_A 11 SCEHTMCGYCQGPLY 25 (40)
T ss_dssp HTCGGGGGGSCHHHH
T ss_pred hccccccccccCCee
Confidence 355667899998533
No 9
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=24.50 E-value=23 Score=23.30 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=9.1
Q ss_pred CCcCchhHHHH
Q 026703 153 RYVQGMNEILA 163 (234)
Q Consensus 153 gY~QGM~~i~a 163 (234)
-|.|||-++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 49999998765
No 10
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=20.83 E-value=86 Score=21.72 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=29.5
Q ss_pred hhCcCCCCCCCcHHHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 026703 18 LLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLD 59 (234)
Q Consensus 18 lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~ 59 (234)
+++.+|+ ...++.+++.+..|++++-.|...+....++++
T Consensus 5 f~r~l~~--~er~~ll~~L~~~YR~ill~YF~~d~~~nq~Id 44 (111)
T 1v2z_A 5 FFRRMSP--ADKRKLLDELRSIYRTIVLEYFNTDAKVNERID 44 (111)
T ss_dssp HHHHHCC--SCCHHHHHHHHHHHHHHHHHTTCTTSCHHHHHH
T ss_pred HHHhCCH--HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444554 345788899999999999999988876665544
Done!