BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026705
MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS
FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD
DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS
DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIHFNPSQLFLASFLS

High Scoring Gene Products

Symbol, full name Information P value
AT2G20740 protein from Arabidopsis thaliana 6.2e-46
AT2G20230 protein from Arabidopsis thaliana 7.6e-29
TOM2A
tobamovirus multiplication 2A
protein from Arabidopsis thaliana 6.9e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026705
        (234 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2051348 - symbol:AT2G20740 "AT2G20740" species...   482  6.2e-46   1
TAIR|locus:2038997 - symbol:AT2G20230 species:3702 "Arabi...   255  7.6e-29   2
TAIR|locus:2033718 - symbol:TOM2A "tobamovirus multiplica...   201  6.9e-23   2


>TAIR|locus:2051348 [details] [associations]
            symbol:AT2G20740 "AT2G20740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR018499 Pfam:PF00335 PROSITE:PS00421 GO:GO:0016021
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006234
            HOGENOM:HOG000029054 EMBL:AF462842 EMBL:AY054217 EMBL:AY097350
            EMBL:AK175553 EMBL:AK176086 IPI:IPI00521463 IPI:IPI00533713
            IPI:IPI00543284 PIR:G84592 RefSeq:NP_179667.2 RefSeq:NP_973493.1
            RefSeq:NP_973494.1 UniGene:At.23632 UniGene:At.71303 IntAct:Q940P5
            PRIDE:Q940P5 EnsemblPlants:AT2G20740.1 GeneID:816603
            KEGG:ath:AT2G20740 TAIR:At2g20740 eggNOG:NOG321653
            InParanoid:Q940P5 OMA:ICKWIGL PhylomeDB:Q940P5
            ProtClustDB:CLSN2690819 Genevestigator:Q940P5 Uniprot:Q940P5
        Length = 221

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 91/205 (44%), Positives = 121/205 (59%)

Query:     1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
             M RI  +CLQS LK +N ++G+VGI+MILY +W+IR WQ  M    F D     PWFI S
Sbjct:     1 MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60

Query:    61 FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWEKDLPD 120
             F+G+G   C++TC GHIAA + NG CL  YM         E  + ADI LN +W+KD P+
Sbjct:    61 FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPE 120

Query:   121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDNDGEFLS 180
             DP+G FH F KF++SNF I KWIG+ I+  Q  S          G +    YD+D E+  
Sbjct:   121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNV 180

Query:   181 DRLPLINHQVQAPAYVIGDPPFAAK 205
               + L+    Q P YV+G+P + AK
Sbjct:   181 STVALLQDARQPPPYVVGEPMYGAK 205


>TAIR|locus:2038997 [details] [associations]
            symbol:AT2G20230 species:3702 "Arabidopsis thaliana"
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0031347 "regulation of defense response"
            evidence=RCA] InterPro:IPR000301 InterPro:IPR018499 Pfam:PF00335
            PRINTS:PR00259 PROSITE:PS00421 GO:GO:0016021 GO:GO:0005774
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006569
            UniGene:At.13955 EMBL:AY054570 EMBL:AY064662 EMBL:AY088475
            IPI:IPI00520899 PIR:F84586 RefSeq:NP_565468.1 UniGene:At.48496
            PaxDb:Q93XY5 PRIDE:Q93XY5 EnsemblPlants:AT2G20230.1 GeneID:816542
            KEGG:ath:AT2G20230 TAIR:At2g20230 eggNOG:NOG310766
            HOGENOM:HOG000029054 InParanoid:Q93XY5 OMA:CKWVGIT PhylomeDB:Q93XY5
            ProtClustDB:CLSN2685757 Genevestigator:Q93XY5 Uniprot:Q93XY5
        Length = 270

 Score = 255 (94.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 55/145 (37%), Positives = 76/145 (52%)

Query:    55 PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEW 114
             PWFI SF+ +G+  C++T +G IAA + NG CL FY ++       E A+ A I ++  W
Sbjct:    98 PWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHW 157

Query:   115 EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDN 174
             EKDLP DPTG     + F++ N DI KW+GI +++ Q+ S           S      D 
Sbjct:   158 EKDLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDE 217

Query:   175 --DGEFLSDRL--PLINHQV-QAPA 194
               D E    R   PL+  Q  QAPA
Sbjct:   218 EEDDENPRSRTWDPLLGPQGNQAPA 242

 Score = 81 (33.6 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:    11 SFLKALNLIMGIVGISMILYGIWMIRVWQRDM 42
             S LK LN +   +G+S+I+Y IWM+  + R +
Sbjct:    12 STLKILNFVQAFIGVSIIIYSIWMLHEYSRHL 43


>TAIR|locus:2033718 [details] [associations]
            symbol:TOM2A "tobamovirus multiplication 2A" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0016020 "membrane"
            evidence=ISS] [GO:0046786 "viral replication complex formation and
            maintenance" evidence=IMP] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] [GO:0005794 "Golgi
            apparatus" evidence=IDA] InterPro:IPR018499 Pfam:PF00335
            GO:GO:0016021 EMBL:CP002684 GO:GO:0009506 GO:GO:0005794
            GO:GO:0005773 GO:GO:0016020 HOGENOM:HOG000029054 GO:GO:0046786
            EMBL:AF334723 EMBL:AF385687 EMBL:AY088560 EMBL:AB085684
            IPI:IPI00522211 RefSeq:NP_001031127.1 RefSeq:NP_564399.1
            RefSeq:NP_973952.1 UniGene:At.15525 IntAct:Q9C5W7 STRING:Q9C5W7
            PRIDE:Q9C5W7 ProMEX:Q9C5W7 EnsemblPlants:AT1G32400.1
            EnsemblPlants:AT1G32400.2 EnsemblPlants:AT1G32400.3 GeneID:840133
            KEGG:ath:AT1G32400 TAIR:At1g32400 InParanoid:Q9C5W7 OMA:TSEFTYN
            PhylomeDB:Q9C5W7 ProtClustDB:CLSN2688198 ArrayExpress:Q9C5W7
            Genevestigator:Q9C5W7 Uniprot:Q9C5W7
        Length = 280

 Score = 201 (75.8 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 52/169 (30%), Positives = 77/169 (45%)

Query:    56 WFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCXXXXXETAIAADIQLNSEWE 115
             WFI  FIGIGV   +I+C G +   S +  CLS Y L+       E   AA I  ++ W 
Sbjct:    80 WFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWR 139

Query:   116 KDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSXXXXXXXXXXGSNQGYSYDND 175
              +LP D TG F     F++ N+ I +W+ +  +  +  +           +N    YD+D
Sbjct:   140 DELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFE--ALLFLLALMVRAANTPAEYDSD 197

Query:   176 GEFLSDRL----PLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKI 220
              E+L+ R     P IN Q  AP  V G  P A   D     +  W+ ++
Sbjct:   198 DEYLAPRQQIRQPFINRQA-AP--VTG-VPVAPTLDQRPSRSDPWSARM 242

 Score = 78 (32.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query:     8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQ-SFD 48
             CL+  LK LN ++ + G+ MI YGI++   ++R  +   +FD
Sbjct:     6 CLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFD 47


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.141   0.465    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       219   0.00092  112 3  11 22  0.44    32
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  212 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.95u 0.08s 17.03t   Elapsed:  00:00:01
  Total cpu time:  16.95u 0.08s 17.03t   Elapsed:  00:00:01
  Start:  Sat May 11 02:27:37 2013   End:  Sat May 11 02:27:38 2013

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