BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026705
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940P5|TET19_ARATH Tetraspanin-19 OS=Arabidopsis thaliana GN=At2g20740 PE=2 SV=1
Length = 221
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 138/220 (62%), Gaps = 7/220 (3%)
Query: 1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICS 60
M RI +CLQS LK +N ++G+VGI+MILY +W+IR WQ M F D PWFI S
Sbjct: 1 MVRIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYS 60
Query: 61 FIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKDLPD 120
F+G+G C++TC GHIAA + NG CL YM LL ++E + ADI LN +W+KD P+
Sbjct: 61 FLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPE 120
Query: 121 DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDNDGEFLS 180
DP+G FH F KF++SNF I KWIG+ I+ Q S L+AM L+ALG + YD+D E+
Sbjct: 121 DPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDSDDEYNV 180
Query: 181 DRLPLINHQVQAPAYVIGDPPFAAKYDPVKPTAYAWNVKI 220
+ L+ Q P YV+G+P + AK AW V++
Sbjct: 181 STVALLQDARQPPPYVVGEPMYGAK-------PGAWTVRL 213
>sp|Q93XY5|TET18_ARATH Tetraspanin-18 OS=Arabidopsis thaliana GN=At2g20230 PE=2 SV=1
Length = 270
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 42/199 (21%)
Query: 11 SFLKALNLIMGIVGISMILYGIWMIRVWQRDME-----------------------GQSF 47
S LK LN + +G+S+I+Y IWM+ + R +
Sbjct: 12 STLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPLKNPI 71
Query: 48 DDFCSI-------------------NPWFICSFIGIGVTFCLITCLGHIAAASANGFCLS 88
D SI PWFI SF+ +G+ C++T +G IAA + NG CL
Sbjct: 72 DFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLC 131
Query: 89 FYMLITCLLLLLETAIAADIQLNSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWII 148
FY ++ LL+LLE A+ A I ++ WEKDLP DPTG + F++ N DI KW+GI ++
Sbjct: 132 FYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIAVV 191
Query: 149 SAQVSSALLAMALRALGSN 167
+ Q+ S LLAM LRA+ S
Sbjct: 192 AVQLLSLLLAMVLRAMVST 210
>sp|Q9SVU4|TET20_ARATH Tetraspanin-20 OS=Arabidopsis thaliana GN=At4g28770 PE=2 SV=1
Length = 281
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 82/124 (66%)
Query: 55 PWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEW 114
PWFI F+ IG+ C++T +G IAA + NG CL FY ++ LL+++E A+ I ++ W
Sbjct: 109 PWFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHW 168
Query: 115 EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQGYSYDN 174
EKDLP DPTG + + F++ N DI KW+GI +++ Q+ S LLA+ LRA+ S + D+
Sbjct: 169 EKDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDD 228
Query: 175 DGEF 178
+ +F
Sbjct: 229 EDDF 232
>sp|Q68VK5|TSN5_RAT Tetraspanin-5 OS=Rattus norvegicus GN=Tspan5 PE=2 SV=2
Length = 268
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|P62080|TSN5_MOUSE Tetraspanin-5 OS=Mus musculus GN=Tspan5 PE=2 SV=1
Length = 268
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|P62079|TSN5_HUMAN Tetraspanin-5 OS=Homo sapiens GN=TSPAN5 PE=2 SV=1
Length = 268
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|Q17QJ5|TSN5_BOVIN Tetraspanin-5 OS=Bos taurus GN=TSPAN5 PE=2 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVT 67
C++ F+ N+I +GI+ + G+W S D +P ++ F+ +G
Sbjct: 14 CIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGFDPVWL--FLVVGGV 71
Query: 68 FCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAADIQLNSEWEKD 117
++ G I A N F L F+ + ++ LE + +W KD
Sbjct: 72 MFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKD 121
>sp|Q7ZUB3|TSN31_DANRE Tetraspanin-31 OS=Danio rerio GN=tspan31 PE=2 SV=2
Length = 212
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 7 TCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGV 66
TC ++ L +LN++ +VG+ +I+ W G+ F SI+ I I +G
Sbjct: 7 TCSKNALCSLNVVYMLVGLLLIVVAAW----------GKGFGIVSSIH--IIGGVIAVGF 54
Query: 67 TFCLITCLGHIAAASANGFCLSFYMLITCLLLLLETAIAAD-IQLNSEWEKDLPDDP 122
LI +G I A + L FYM+I ++ L + ++ + +N ++ L +
Sbjct: 55 FLQLIAIVGLIGAVHHHQVMLFFYMVILFVVFLFQFGVSCSCLAMNQGQQEKLLESS 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,984,356
Number of Sequences: 539616
Number of extensions: 3602396
Number of successful extensions: 8860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 8833
Number of HSP's gapped (non-prelim): 59
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)