Query 026705
Match_columns 234
No_of_seqs 184 out of 1009
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 11:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.9 7.7E-27 1.7E-31 202.8 15.0 164 1-169 1-232 (237)
2 PF00335 Tetraspannin: Tetrasp 99.7 3.5E-19 7.7E-24 148.2 0.1 152 8-164 1-220 (221)
3 KOG4433 Tweety transmembrane/c 91.9 4.7 0.0001 39.1 13.3 39 62-100 214-252 (526)
4 cd03164 CD53_like_LEL Tetraspa 89.1 0.24 5.1E-06 35.9 1.6 21 121-141 66-86 (86)
5 PF15050 SCIMP: SCIMP protein 83.6 3 6.5E-05 33.1 5.3 33 131-164 2-34 (133)
6 PRK10263 DNA translocase FtsK; 83.4 41 0.00089 36.8 15.0 15 59-73 76-90 (1355)
7 PF07086 DUF1352: Protein of u 81.5 14 0.00029 31.6 8.9 88 9-111 37-124 (186)
8 PF04103 CD20: CD20-like famil 78.6 0.72 1.6E-05 36.4 0.2 67 19-98 5-71 (150)
9 PRK12585 putative monovalent c 74.7 46 0.001 28.6 10.1 56 13-78 5-60 (197)
10 PF04906 Tweety: Tweety; Inte 74.0 12 0.00025 35.6 7.1 31 66-96 194-224 (406)
11 PF15345 TMEM51: Transmembrane 73.7 5.1 0.00011 35.3 4.2 20 58-79 61-80 (233)
12 PF05915 DUF872: Eukaryotic pr 69.5 12 0.00027 29.3 5.1 48 14-73 44-91 (115)
13 PF06341 DUF1056: Protein of u 65.5 33 0.00072 24.2 6.1 49 6-74 4-52 (63)
14 PF04156 IncA: IncA protein; 63.2 14 0.00031 30.7 4.7 23 14-36 5-27 (191)
15 PF10724 DUF2516: Protein of u 57.7 56 0.0012 25.0 6.7 29 10-38 2-30 (100)
16 cd07912 Tweety_N N-terminal do 56.8 37 0.00081 32.5 6.8 38 63-100 214-251 (418)
17 cd03158 penumbra_like_LEL Tetr 54.0 8.8 0.00019 29.4 1.8 17 121-137 103-119 (119)
18 cd03166 CD63_LEL Tetraspanin, 52.0 7.4 0.00016 28.5 1.1 17 121-137 83-99 (99)
19 cd03167 oculospanin_like_LEL T 51.1 9.6 0.00021 29.4 1.6 17 121-137 104-120 (120)
20 cd03161 TM4SF2_6_like_LEL Tetr 51.0 9.6 0.00021 28.0 1.5 17 121-137 88-104 (104)
21 cd03163 TM4SF8_like_LEL Tetras 50.2 8.7 0.00019 28.5 1.2 17 121-137 88-104 (105)
22 PF12273 RCR: Chitin synthesis 49.8 15 0.00032 29.0 2.5 24 141-164 1-24 (130)
23 cd03154 TM4SF3_like_LEL Tetras 49.5 12 0.00025 27.5 1.8 17 121-137 84-100 (100)
24 cd03165 NET-5_like_LEL Tetrasp 48.1 9.8 0.00021 27.7 1.2 17 121-137 82-98 (98)
25 cd03159 TM4SF9_like_LEL Tetras 45.6 11 0.00024 28.9 1.2 17 121-137 105-121 (121)
26 cd03152 CD9_LEL Tetraspanin, e 45.6 14 0.00029 26.5 1.6 17 121-137 68-84 (84)
27 cd03160 CD37_CD82_like_LEL Tet 45.3 9.6 0.00021 28.9 0.8 17 121-137 100-116 (117)
28 cd03155 CD151_like_LEL Tetrasp 45.0 16 0.00034 27.3 1.9 15 123-137 96-110 (110)
29 PF05640 NKAIN: Na,K-Atpase In 43.5 71 0.0015 27.6 5.8 33 69-101 44-76 (200)
30 PF10176 DUF2370: Protein of u 43.5 33 0.00072 30.3 3.9 33 53-85 192-224 (233)
31 PF05255 UPF0220: Uncharacteri 42.8 2E+02 0.0043 24.0 10.9 129 16-172 21-165 (166)
32 PF09323 DUF1980: Domain of un 42.6 1.3E+02 0.0027 25.0 7.2 29 57-85 31-59 (182)
33 PF14995 TMEM107: Transmembran 41.0 71 0.0015 25.3 5.1 61 96-159 7-69 (124)
34 cd03156 uroplakin_I_like_LEL T 39.0 19 0.00041 26.7 1.5 17 121-137 98-114 (114)
35 PF06724 DUF1206: Domain of Un 38.3 35 0.00077 24.0 2.8 21 17-37 47-67 (73)
36 PF11127 DUF2892: Protein of u 38.1 80 0.0017 21.6 4.5 23 59-81 34-56 (66)
37 KOG3950 Gamma/delta sarcoglyca 35.1 55 0.0012 29.3 3.9 26 85-110 35-60 (292)
38 cd03127 tetraspanin_LEL Tetras 34.9 22 0.00048 24.8 1.3 17 121-137 74-90 (90)
39 PF01601 Corona_S2: Coronaviru 34.9 13 0.00028 37.1 0.0 17 54-70 546-562 (610)
40 PF15125 TMEM238: TMEM238 prot 34.3 1.4E+02 0.003 21.2 5.0 45 14-77 7-51 (65)
41 PF11297 DUF3098: Protein of u 31.3 55 0.0012 23.5 2.8 22 16-37 6-27 (69)
42 COG4993 Gcd Glucose dehydrogen 31.0 1.4E+02 0.003 30.4 6.3 61 13-95 3-63 (773)
43 PHA03283 envelope glycoprotein 30.7 70 0.0015 31.6 4.2 30 131-161 394-423 (542)
44 PRK12587 putative monovalent c 29.6 2.8E+02 0.0061 21.8 10.0 33 9-41 2-34 (118)
45 PRK12586 putative monovalent c 29.4 3.2E+02 0.0069 22.4 10.6 30 12-41 7-36 (145)
46 PRK11901 hypothetical protein; 28.7 51 0.0011 30.5 2.8 24 59-82 37-60 (327)
47 KOG4812 Golgi-associated prote 28.3 82 0.0018 28.1 3.9 30 54-83 222-251 (262)
48 PRK07946 putative monovalent c 27.8 77 0.0017 26.5 3.5 22 16-37 3-24 (163)
49 PF13903 Claudin_2: PMP-22/EMP 26.6 3.1E+02 0.0067 21.3 7.0 30 59-88 72-102 (172)
50 PF10731 Anophelin: Thrombin i 26.1 1.1E+02 0.0024 21.4 3.4 27 151-177 9-38 (65)
51 PF04156 IncA: IncA protein; 25.2 3.2E+02 0.007 22.4 6.9 20 60-79 10-29 (191)
52 PF11381 DUF3185: Protein of u 24.9 44 0.00095 23.2 1.3 16 60-75 43-58 (59)
53 PF10812 DUF2561: Protein of u 24.7 2.6E+02 0.0057 24.2 6.2 57 12-71 23-79 (207)
54 PF11014 DUF2852: Protein of u 24.7 70 0.0015 25.2 2.6 16 19-34 21-36 (115)
55 PF12273 RCR: Chitin synthesis 24.6 72 0.0016 25.0 2.7 8 172-179 78-85 (130)
56 KOG4054 Uncharacterized conser 24.5 4.4E+02 0.0095 22.3 9.3 80 9-103 37-116 (183)
57 PF10177 DUF2371: Uncharacteri 24.5 66 0.0014 26.3 2.4 21 60-84 111-131 (141)
58 PRK15033 tricarballylate utili 24.2 4.5E+02 0.0099 25.0 8.3 14 18-31 275-288 (389)
59 PF13706 PepSY_TM_3: PepSY-ass 22.5 1.4E+02 0.0031 18.2 3.2 24 59-82 10-33 (37)
60 PF12805 FUSC-like: FUSC-like 22.0 4.7E+02 0.01 23.0 7.7 22 60-81 26-47 (284)
61 TIGR01167 LPXTG_anchor LPXTG-m 21.8 1.1E+02 0.0024 17.8 2.6 20 18-37 11-30 (34)
62 PF03729 DUF308: Short repeat 20.7 2.7E+02 0.0058 18.4 6.5 46 23-83 2-47 (72)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.95 E-value=7.7e-27 Score=202.84 Aligned_cols=164 Identities=22% Similarity=0.262 Sum_probs=136.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHh
Q 026705 1 MERIAITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAA 80 (234)
Q Consensus 1 M~~~~~~clK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~ 80 (234)
|.+++.+|+|++++++|+++|++|++++++|+|+..+...+.... ... .....++++++|++++++|++||+||.
T Consensus 1 ~~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~---~~~--~~~~~~ili~~G~v~~~v~flGc~Ga~ 75 (237)
T KOG3882|consen 1 MMSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLL---ESD--FLVPAYILIAVGGVVFLVGFLGCCGAL 75 (237)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhcc---ccc--hhcchhhhhhhhHHHHHHHHhhhhhhH
Confidence 446788999999999999999999999999999988766543321 000 011236899999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhHhhcc---------------------------------------------cccc
Q 026705 81 SANGFCLSFYMLITCLLLLLETAIAADIQLN---------------------------------------------SEWE 115 (234)
Q Consensus 81 ~en~c~L~~Y~vll~ll~llEla~~~~~~~~---------------------------------------------~dW~ 115 (234)
|||+|+|.+|++++++++++|++++++.+.. .||.
T Consensus 76 ~es~~lL~~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~ 155 (237)
T KOG3882|consen 76 RESRCLLLSYFILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYF 155 (237)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHh
Confidence 9999999999999999999999998877632 1222
Q ss_pred cc----CCC-------------------CCCChHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026705 116 KD----LPD-------------------DPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRALGSNQG 169 (234)
Q Consensus 116 ~~----iP~-------------------~~~GC~~~l~~fl~~n~~i~~~v~l~v~~iqllgiilA~~L~~~~~~~~ 169 (234)
+. +|+ +.+||.+++++|+++|+.++++++++++++|++++++|++|...+++++
T Consensus 156 ~~~~~~vP~SCC~~~~~~~~~~~~~~~~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~ 232 (237)
T KOG3882|consen 156 NCSSNNVPPSCCKRTRRQKFPQDVPDNIYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRNQR 232 (237)
T ss_pred cCCCCCCCcccCCCcccccccccchhhhhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 454 2579999999999999999999999999999999999999988777654
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.73 E-value=3.5e-19 Score=148.22 Aligned_cols=152 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHH
Q 026705 8 CLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCL 87 (234)
Q Consensus 8 clK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L 87 (234)
|+|+++.++|++++++|++++++|+|+....+..... .. .......+.++.+|+++++++++||+|+.++|+|++
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~----~~-~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l 75 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEF----SS-SFISYVIIILIFIGIFILIISFLGCIGACRKNRCLL 75 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc----cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 8999999999999999999999999984221111110 00 111122356777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcc---------------------------------------------ccccccC----
Q 026705 88 SFYMLITCLLLLLETAIAADIQLN---------------------------------------------SEWEKDL---- 118 (234)
Q Consensus 88 ~~Y~vll~ll~llEla~~~~~~~~---------------------------------------------~dW~~~i---- 118 (234)
..|.+++++++++|+++++..+.. +||.+..
T Consensus 76 ~~y~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~~~~~~ 155 (221)
T PF00335_consen 76 IIYIILLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTSKWSSC 155 (221)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHHHHHT-
T ss_pred cccccchhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCccccccccccc
Confidence 999999999999999887665431 1231110
Q ss_pred -------------------CCCCCChHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 026705 119 -------------------PDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAMALRAL 164 (234)
Q Consensus 119 -------------------P~~~~GC~~~l~~fl~~n~~i~~~v~l~v~~iqllgiilA~~L~~~ 164 (234)
+.+.+||.+++.++++++...+++++++++++|++++++|++|++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~~ 220 (221)
T PF00335_consen 156 SSPDSCPDCQCPDDCSSENSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCRH 220 (221)
T ss_dssp --------TCS-TTCCCCHCCTST-HHHHHHHHHCT-----------------------------
T ss_pred ccccccccccccccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0146899999999999999999999999999999999999998653
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=91.93 E-value=4.7 Score=39.09 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 026705 62 IGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLL 100 (234)
Q Consensus 62 i~vG~il~lvsflGc~GA~~en~c~L~~Y~vll~ll~ll 100 (234)
++.=.+.+++-+.++.|-.|+|+|.+..|++.=++.+++
T Consensus 214 v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 214 VLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 344567778888899999999999999998885555544
No 4
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=89.12 E-value=0.24 Score=35.91 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.2
Q ss_pred CCCChHHHHHHHHHhcccchh
Q 026705 121 DPTGRFHDFKKFVKSNFDIFK 141 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~~i~~ 141 (234)
+.+||.+++.+|+++|+.+++
T Consensus 66 ~~~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 66 KVEGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred ccccHHHHHHHHHHHHHHHhC
Confidence 467999999999999998764
No 5
>PF15050 SCIMP: SCIMP protein
Probab=83.63 E-value=3 Score=33.14 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 026705 131 KFVKSNFDIFKWIGIWIISAQVSSALLAMALRAL 164 (234)
Q Consensus 131 ~fl~~n~~i~~~v~l~v~~iqllgiilA~~L~~~ 164 (234)
+|.++|+-++-++++.++. -.+|+++-|+.|..
T Consensus 2 ~WWr~nFWiiLAVaII~vS-~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 2 SWWRDNFWIILAVAIILVS-VVLGLILYCVCRWQ 34 (133)
T ss_pred chHHhchHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6899999999988865543 44677777665433
No 6
>PRK10263 DNA translocase FtsK; Provisional
Probab=83.36 E-value=41 Score=36.77 Aligned_cols=15 Identities=7% Similarity=-0.029 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026705 59 CSFIGIGVTFCLITC 73 (234)
Q Consensus 59 y~li~vG~il~lvsf 73 (234)
+.+++++++++.+.+
T Consensus 76 ~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 76 FFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHhHHHHHHHHHH
Confidence 456777777766533
No 7
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=81.52 E-value=14 Score=31.59 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHHH
Q 026705 9 LQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLS 88 (234)
Q Consensus 9 lK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L~ 88 (234)
+|.+ +++++++++++++-++.+.-..++.... ..|.+|- |..+ + -++.+++|-.|--|.|.-.|.
T Consensus 37 lk~l-~~~h~ll~l~~~a~v~~~~L~~i~~~~~---------p~p~~We-y~~~-l---S~ip~~~G~~s~~rN~i~~l~ 101 (186)
T PF07086_consen 37 LKKL-ILFHALLWLLMAAKVSVDILLEISELQI---------PSPYQWE-YIWC-L---SLIPSLLGLLSLRRNNISLLR 101 (186)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc---------CChhHHH-HHHH-H---HHHHHHHHHHhcccchHHHHH
Confidence 4433 3667778887777777666644332210 0233452 3322 2 344566777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcc
Q 026705 89 FYMLITCLLLLLETAIAADIQLN 111 (234)
Q Consensus 89 ~Y~vll~ll~llEla~~~~~~~~ 111 (234)
.|++-.+++-++=+..++..++.
T Consensus 102 ~y~~~~~~~gl~pl~~g~~~~~~ 124 (186)
T PF07086_consen 102 LYMIGSSLFGLLPLIYGAMYYFP 124 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666545545555554443
No 8
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=78.58 E-value=0.72 Score=36.43 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHHHHHHHHHHHHH
Q 026705 19 IMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLL 98 (234)
Q Consensus 19 if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L~~Y~vll~ll~ 98 (234)
+..++|+..+..|+.+......... ....| +-.|+..++.|.+|..+..|.++|++..+.++-++-+
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~~~~-------~~~~p------iW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~ 71 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSSVLV-------YIGYP------IWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSA 71 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-------Hhccc------HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHH
Confidence 4567788888888876543322000 01112 3448888889999988898888898877766544433
No 9
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=74.74 E-value=46 Score=28.58 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhH
Q 026705 13 LKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIA 78 (234)
Q Consensus 13 L~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~G 78 (234)
+-.+-.++.++|..++.+|..-+.+..+.....+- .+. --.+|+.++++|.+++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHA----ATK------a~TLGv~LILlgv~l~~~ 60 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHA----AGI------SNTFGVSLLLFATVGYFF 60 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhc----ccc------chhhhHHHHHHHHHHHHH
Confidence 34555677888888888888877765554332211 111 235566666677666544
No 10
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=74.05 E-value=12 Score=35.56 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhHHhhhhhhHHHHHHHHHHH
Q 026705 66 VTFCLITCLGHIAAASANGFCLSFYMLITCL 96 (234)
Q Consensus 66 ~il~lvsflGc~GA~~en~c~L~~Y~vll~l 96 (234)
++.+++.++|+.|..|+|+|.+..+.++-++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll 224 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLL 224 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHH
Confidence 4566677778899999999999876665433
No 11
>PF15345 TMEM51: Transmembrane protein 51
Probab=73.66 E-value=5.1 Score=35.28 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH
Q 026705 58 ICSFIGIGVTFCLITCLGHIAA 79 (234)
Q Consensus 58 iy~li~vG~il~lvsflGc~GA 79 (234)
.|+++++|+++++++. |.+.
T Consensus 61 AyVLVG~Gv~LLLLSI--CL~I 80 (233)
T PF15345_consen 61 AYVLVGSGVALLLLSI--CLSI 80 (233)
T ss_pred EEehhhHHHHHHHHHH--HHHH
Confidence 4899999999999998 4444
No 12
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=69.46 E-value=12 Score=29.32 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHH
Q 026705 14 KALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITC 73 (234)
Q Consensus 14 ~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsf 73 (234)
..+-+.++++|..++..|..+....-. . ..... +.++++|+++++=|+
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i~-~--------~~~~~---~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHID-G--------DRDRG---WALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-C--------CCccc---chHHHHHHHHHhccH
Confidence 345567778899999999987765311 0 01222 467888999887665
No 13
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=65.52 E-value=33 Score=24.16 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHh
Q 026705 6 ITCLQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCL 74 (234)
Q Consensus 6 ~~clK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsfl 74 (234)
.+..|.+=..+..+++++|...+.++.+..... .-++++|+.+++.|++
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~it~F~~n~~--------------------~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFINITAFLINQI--------------------AGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999865421 2467888888887764
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.15 E-value=14 Score=30.68 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 026705 14 KALNLIMGIVGISMILYGIWMIR 36 (234)
Q Consensus 14 ~~~N~if~l~Gl~li~~Giw~~~ 36 (234)
.+.+.+..++|+++++.|+-.+.
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776544
No 15
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=57.68 E-value=56 Score=25.03 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 026705 10 QSFLKALNLIMGIVGISMILYGIWMIRVW 38 (234)
Q Consensus 10 K~lL~~~N~if~l~Gl~li~~Giw~~~~~ 38 (234)
..+..+.+.+++++.++.++.++|.+.+-
T Consensus 2 ~~l~~~~~~i~~~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 2 SFLFQIQGWILLALSLVALVLAVWALVDA 30 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999999999999987763
No 16
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=56.84 E-value=37 Score=32.48 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 026705 63 GIGVTFCLITCLGHIAAASANGFCLSFYMLITCLLLLL 100 (234)
Q Consensus 63 ~vG~il~lvsflGc~GA~~en~c~L~~Y~vll~ll~ll 100 (234)
++=++.+++..+||+|..|.|+|.+.+++++-++.+++
T Consensus 214 ~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~ 251 (418)
T cd07912 214 GLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALII 251 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33345566677788999999999999987765444443
No 17
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=53.98 E-value=8.8 Score=29.37 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 103 ~~~GC~~~i~~~~~~n~ 119 (119)
T cd03158 103 YTRGCIDAVVLWIEDNL 119 (119)
T ss_pred cccchHHHHHHHHHhhC
Confidence 56799999999999985
No 18
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=51.99 E-value=7.4 Score=28.54 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 83 y~~GC~~~~~~~~~~~~ 99 (99)
T cd03166 83 HLEGCVTKIEGWLKKNI 99 (99)
T ss_pred HHhcCHHHHHHHHHHhC
Confidence 35699999999999884
No 19
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=51.12 E-value=9.6 Score=29.39 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 104 y~~GC~~~l~~~~~~n~ 120 (120)
T cd03167 104 HLGGCGPPLRRWLRGNL 120 (120)
T ss_pred hhccCHHHHHHHHHhcC
Confidence 46799999999999985
No 20
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=50.96 E-value=9.6 Score=28.03 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 88 ~~~GC~~~~~~~~~~n~ 104 (104)
T cd03161 88 YQQGCFTLVTSFMEANM 104 (104)
T ss_pred chhccHHHHHHHHHHhC
Confidence 46799999999999884
No 21
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=50.16 E-value=8.7 Score=28.49 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 88 ~~~GC~~~~~~~~~~~~ 104 (105)
T cd03163 88 YQEGCEAKLVKKLQEVM 104 (105)
T ss_pred hhhccHHHHHHHHHHHh
Confidence 46799999999999986
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.78 E-value=15 Score=28.99 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 026705 141 KWIGIWIISAQVSSALLAMALRAL 164 (234)
Q Consensus 141 ~~v~l~v~~iqllgiilA~~L~~~ 164 (234)
+|+.++++++=++.+++.+++++.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 467777766666666666655333
No 23
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=49.54 E-value=12 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 84 ~~~GC~~~i~~~~~~~~ 100 (100)
T cd03154 84 YKEPCISKIKDFLKKNL 100 (100)
T ss_pred cccccHHHHHHHHHhhC
Confidence 45799999999999985
No 24
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=48.09 E-value=9.8 Score=27.72 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 82 ~~~GC~~~~~~~~~~~~ 98 (98)
T cd03165 82 WKTGCYEKVQQWLVDNL 98 (98)
T ss_pred HHhhhHHHHHHHHHhcC
Confidence 46799999999999884
No 25
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=45.63 E-value=11 Score=28.86 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=15.0
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 105 ~~~GC~~~l~~~~~~n~ 121 (121)
T cd03159 105 HTKGCVQAFEKWLQDNL 121 (121)
T ss_pred hHhhCHHHHHHHHHhcC
Confidence 46799999999999985
No 26
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=45.55 E-value=14 Score=26.51 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 68 ~~~gC~~~i~~~~~~~~ 84 (84)
T cd03152 68 ITKSCPDAIDDVFNSKL 84 (84)
T ss_pred ccCCCcHHHHHHHHccC
Confidence 46699999999999985
No 27
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=45.28 E-value=9.6 Score=28.90 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|+
T Consensus 100 y~~GC~~~l~~~~~~n~ 116 (117)
T cd03160 100 YQEGCMEKLQSWLNENL 116 (117)
T ss_pred HHHhhHHHHHHHHHHhc
Confidence 45799999999999986
No 28
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=45.00 E-value=16 Score=27.28 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHhcc
Q 026705 123 TGRFHDFKKFVKSNF 137 (234)
Q Consensus 123 ~GC~~~l~~fl~~n~ 137 (234)
+||++++.+|+++|+
T Consensus 96 ~GC~~~~~~~~~~~~ 110 (110)
T cd03155 96 GGCIPKLEDFLYDHL 110 (110)
T ss_pred CChHHHHHHHHHHhC
Confidence 799999999999885
No 29
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=43.49 E-value=71 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHhhhhHHhhhhhhHHHHHHHHHHHHHHHH
Q 026705 69 CLITCLGHIAAASANGFCLSFYMLITCLLLLLE 101 (234)
Q Consensus 69 ~lvsflGc~GA~~en~c~L~~Y~vll~ll~llE 101 (234)
+++-.+|..||.+-.+..+.+|.+-..+=+..-
T Consensus 44 Ii~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wN 76 (200)
T PF05640_consen 44 IIFVILGLFGAIQYRPRYIIVYAVWTALWVTWN 76 (200)
T ss_pred HHHHHHHHhhheeecchHHHHHHHHHHHHHHHh
Confidence 334466778899999999999998765544433
No 30
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=43.48 E-value=33 Score=30.27 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhh
Q 026705 53 INPWFICSFIGIGVTFCLITCLGHIAAASANGF 85 (234)
Q Consensus 53 ~~~~~iy~li~vG~il~lvsflGc~GA~~en~c 85 (234)
..+|..|++|++|.++++-|+.+++=+.|..+-
T Consensus 192 ~~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 192 SNPWLAYILMAFGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999988776653
No 31
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=42.82 E-value=2e+02 Score=23.99 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccc-cCccCCCChhhHHHHHHHHHHHHHH---------HH--hhhhHHhhhh
Q 026705 16 LNLIMGIVGISMILYGIWMIRVWQRDMEGQS-FDDFCSINPWFICSFIGIGVTFCLI---------TC--LGHIAAASAN 83 (234)
Q Consensus 16 ~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~-~~~~~~~~~~~iy~li~vG~il~lv---------sf--lGc~GA~~en 83 (234)
-|-+.-.+..++.+.|-|++.+-.-+.+... .+.+.....|.+-++-.+|.+++=. +. -||.|+.+..
T Consensus 21 ~~~~~~~~AGaLF~~gwWi~iDa~v~s~~~~~~~~~~~f~~~ipgI~stlgm~mvN~V~~~~l~~~~~~~~~~~~~~~aR 100 (166)
T PF05255_consen 21 RNAIGSYVAGALFALGWWIFIDAAVYSKHANGSDVHVTFVDWIPGIFSTLGMFMVNSVSKSRLRGDSYSESGCGGAWRAR 100 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeeehHHHHHHHHHHhccccHHHhcCCCCCCCCCchhHHHH
Confidence 4566667777889999999887322211100 0001112233334555555554321 01 1677776654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhc----cccccccCCCCCCChHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Q 026705 84 GFCLSFYMLITCLLLLLETAIAADIQL----NSEWEKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAM 159 (234)
Q Consensus 84 ~c~L~~Y~vll~ll~llEla~~~~~~~----~~dW~~~iP~~~~GC~~~l~~fl~~n~~i~~~v~l~v~~iqllgiilA~ 159 (234)
.++..- +++...-++.+++++. .+++.+ | -.|-|++.++ |=+.+.+++
T Consensus 101 ~~LFig-----f~l~fggl~~s~~vli~~yv~~~~~~--~--------------------~~~~Gva~vl-qN~lI~~Ss 152 (166)
T PF05255_consen 101 LWLFIG-----FALSFGGLAGSVWVLILKYVVPQYTK--P--------------------TLWPGVANVL-QNALIFLSS 152 (166)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHhhcccccCCCCC--C--------------------CcccccHHHH-HHHHHHHHH
Confidence 333222 1222222333333333 333210 1 2455565544 888888888
Q ss_pred HHHhhccCCCCcc
Q 026705 160 ALRALGSNQGYSY 172 (234)
Q Consensus 160 ~L~~~~~~~~~~~ 172 (234)
++...+|+.+.||
T Consensus 153 lvl~~~r~~ed~y 165 (166)
T PF05255_consen 153 LVLWFGRNTEDEY 165 (166)
T ss_pred HHHHhcccccccC
Confidence 8888877665444
No 32
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=42.62 E-value=1.3e+02 Score=25.04 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhhhhh
Q 026705 57 FICSFIGIGVTFCLITCLGHIAAASANGF 85 (234)
Q Consensus 57 ~iy~li~vG~il~lvsflGc~GA~~en~c 85 (234)
..+.++..++++++++++-.....+..+.
T Consensus 31 ~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 31 YIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566777888888888877777666544
No 33
>PF14995 TMEM107: Transmembrane protein
Probab=40.97 E-value=71 Score=25.33 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHhhccccc--cccCCCCCCChHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Q 026705 96 LLLLLETAIAADIQLNSEW--EKDLPDDPTGRFHDFKKFVKSNFDIFKWIGIWIISAQVSSALLAM 159 (234)
Q Consensus 96 ll~llEla~~~~~~~~~dW--~~~iP~~~~GC~~~l~~fl~~n~~i~~~v~l~v~~iqllgiilA~ 159 (234)
+.+++...+.+.++.++|- +...|.+.+ +.-.+.-+..+..+-+++++..++|..|++.+.
T Consensus 7 l~l~~Hlvi~i~i~~~~~~nv~a~lp~~~~---~~~y~~~~~~l~v~L~~s~~~l~ie~~g~~sG~ 69 (124)
T PF14995_consen 7 LTLIAHLVIVICIFWSREENVRACLPLDYT---QAEYSTADTSLVVALSVSLLCLAIEFWGFFSGV 69 (124)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHhhCCCCCc---HHHHHHhhhheehHHHHHHHHHHHHHHHHHHhh
Confidence 4455555556666666542 223554322 223555666888899999999999999999664
No 34
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=38.96 E-value=19 Score=26.69 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=14.7
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||++++.+|+++|.
T Consensus 98 ~~~GC~~~l~~~~~~~~ 114 (114)
T cd03156 98 NKKGCYEKLSNPIERYA 114 (114)
T ss_pred hhcCchHHHHHHHHhcC
Confidence 46799999999999873
No 35
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=38.28 E-value=35 Score=23.96 Aligned_cols=21 Identities=38% Similarity=0.881 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 026705 17 NLIMGIVGISMILYGIWMIRV 37 (234)
Q Consensus 17 N~if~l~Gl~li~~Giw~~~~ 37 (234)
..+++++|+.++++|+|...+
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999997654
No 36
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=38.06 E-value=80 Score=21.60 Aligned_cols=23 Identities=9% Similarity=0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhh
Q 026705 59 CSFIGIGVTFCLITCLGHIAAAS 81 (234)
Q Consensus 59 y~li~vG~il~lvsflGc~GA~~ 81 (234)
+++..+|+.+++.++.|+|...+
T Consensus 34 ~~~~~~g~~ll~~g~~g~Cp~~~ 56 (66)
T PF11127_consen 34 WLLGFVGAMLLVTGITGFCPLYA 56 (66)
T ss_pred HHHHHHHHHHHHHHHHCcCHhHH
Confidence 46788999999999999998753
No 37
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=35.10 E-value=55 Score=29.34 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhc
Q 026705 85 FCLSFYMLITCLLLLLETAIAADIQL 110 (234)
Q Consensus 85 c~L~~Y~vll~ll~llEla~~~~~~~ 110 (234)
.||++|..+|++++++-++..+|+..
T Consensus 35 rcLY~fvLlL~i~ivvNLalTiWIlk 60 (292)
T KOG3950|consen 35 RCLYTFVLLLMILIVVNLALTIWILK 60 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999998753
No 38
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=34.89 E-value=22 Score=24.85 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHHHhcc
Q 026705 121 DPTGRFHDFKKFVKSNF 137 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n~ 137 (234)
+.+||.+++.+|+++|.
T Consensus 74 ~~~GC~~~~~~~~~~~~ 90 (90)
T cd03127 74 YTEGCLEKLVDFLRSNL 90 (90)
T ss_pred hhHccHHHHHHHHHhhC
Confidence 36799999999999873
No 39
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=34.87 E-value=13 Score=37.08 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHH
Q 026705 54 NPWFICSFIGIGVTFCL 70 (234)
Q Consensus 54 ~~~~iy~li~vG~il~l 70 (234)
=||++|+.|+++.+.++
T Consensus 546 WPWyVWL~i~~~li~~~ 562 (610)
T PF01601_consen 546 WPWYVWLAIILALIAFA 562 (610)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 47888887777765543
No 40
>PF15125 TMEM238: TMEM238 protein family
Probab=34.31 E-value=1.4e+02 Score=21.21 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhh
Q 026705 14 KALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHI 77 (234)
Q Consensus 14 ~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~ 77 (234)
+.+-.+|=++|++++..|+..-..+. =.++=.|++++..|.++..
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~f~-------------------D~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLDFY-------------------DFLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchhHH-------------------HHHHHHhHHHHHHHHHHHH
Confidence 44667788999999999998533211 1456679999888887754
No 41
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=31.26 E-value=55 Score=23.46 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 026705 16 LNLIMGIVGISMILYGIWMIRV 37 (234)
Q Consensus 16 ~N~if~l~Gl~li~~Giw~~~~ 37 (234)
-|.++.++|++++.+|-+++.-
T Consensus 6 ~Nyill~iG~~vIilGfilMsg 27 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSG 27 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeC
Confidence 4999999999999999998764
No 42
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.96 E-value=1.4e+02 Score=30.45 Aligned_cols=61 Identities=20% Similarity=0.520 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHHHHHHH
Q 026705 13 LKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLSFYML 92 (234)
Q Consensus 13 L~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L~~Y~v 92 (234)
+.+..+++.++|+++.+-|+|+..- .-.| | .+.+|..+++.+++ -.++++--|..|..
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~l---------------ggs~--y-y~iagl~~l~~~~l----l~~~k~aal~lya~ 60 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVAL---------------GGSW--Y-YLIAGLVLLLSAWL----LLRRKRAALWLYAL 60 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEee---------------CCch--H-HHHHHHHHHHHHHH----HhccchhHHHHHHH
Confidence 3456678889999999999986431 1112 2 34568777777775 35777888888876
Q ss_pred HHH
Q 026705 93 ITC 95 (234)
Q Consensus 93 ll~ 95 (234)
+++
T Consensus 61 ~~~ 63 (773)
T COG4993 61 VLL 63 (773)
T ss_pred HHH
Confidence 554
No 43
>PHA03283 envelope glycoprotein E; Provisional
Probab=30.71 E-value=70 Score=31.56 Aligned_cols=30 Identities=3% Similarity=-0.034 Sum_probs=13.4
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Q 026705 131 KFVKSNFDIFKWIGIWIISAQVSSALLAMAL 161 (234)
Q Consensus 131 ~fl~~n~~i~~~v~l~v~~iqllgiilA~~L 161 (234)
.|.+..+..++.++-++++. ++++..-+|+
T Consensus 394 ~~~~~~l~~~~~~~~~~~~~-~~~l~vw~c~ 423 (542)
T PHA03283 394 AWTRHYLAFLLAIICTCAAL-LVALVVWGCI 423 (542)
T ss_pred ccccccchhHHHHHHHHHHH-HHHHhhhhee
Confidence 44555554455444444433 3444333333
No 44
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.63 E-value=2.8e+02 Score=21.82 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 026705 9 LQSFLKALNLIMGIVGISMILYGIWMIRVWQRD 41 (234)
Q Consensus 9 lK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~ 41 (234)
+|-.+-..-.++.+.|..+..+|..-+.+..+.
T Consensus 2 ~~~~~~~l~~ill~~G~~~~ligaiGllR~PD~ 34 (118)
T PRK12587 2 IKIILISLALIFVIIGALISALAAIGLLRLEDV 34 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 455677777889999999999998877765544
No 45
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.41 E-value=3.2e+02 Score=22.37 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 026705 12 FLKALNLIMGIVGISMILYGIWMIRVWQRD 41 (234)
Q Consensus 12 lL~~~N~if~l~Gl~li~~Giw~~~~~~~~ 41 (234)
++-++-.++.++|..++.+|..-+.+..+.
T Consensus 7 ~~~il~~ill~lG~~f~ligaIGllRfPD~ 36 (145)
T PRK12586 7 IFSLIAAIMILLGSIIALISAIGIVKFQDV 36 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 345566778888888888888877665543
No 46
>PRK11901 hypothetical protein; Reviewed
Probab=28.66 E-value=51 Score=30.53 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhh
Q 026705 59 CSFIGIGVTFCLITCLGHIAAASA 82 (234)
Q Consensus 59 y~li~vG~il~lvsflGc~GA~~e 82 (234)
+++|++|++++++-++|.-.|+|.
T Consensus 37 h~MiGiGilVLlLLIi~IgSALks 60 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALKS 60 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Confidence 689999999988888887777653
No 47
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=28.27 E-value=82 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=24.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 026705 54 NPWFICSFIGIGVTFCLITCLGHIAAASAN 83 (234)
Q Consensus 54 ~~~~iy~li~vG~il~lvsflGc~GA~~en 83 (234)
-+|--++++++|.++++.++++.+-.-|-.
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~YikVrrm~ 251 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIKVRRME 251 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHhhHH
Confidence 356667899999999999999988765543
No 48
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=27.76 E-value=77 Score=26.48 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 026705 16 LNLIMGIVGISMILYGIWMIRV 37 (234)
Q Consensus 16 ~N~if~l~Gl~li~~Giw~~~~ 37 (234)
.|++..++..++++.|+|++.+
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~ 24 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLE 24 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888889999998874
No 49
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=26.56 E-value=3.1e+02 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHh-hhhHHhhhhhhHHH
Q 026705 59 CSFIGIGVTFCLITCL-GHIAAASANGFCLS 88 (234)
Q Consensus 59 y~li~vG~il~lvsfl-Gc~GA~~en~c~L~ 88 (234)
..++.+|.++.+++++ +.++..+++..+..
T Consensus 72 ~~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (172)
T PF13903_consen 72 IAFLILGLLLLLFAFVFALIGFCKRSYTLYL 102 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 3456667777776665 77777777764443
No 50
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.11 E-value=1.1e+02 Score=21.41 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhcc---CCCCccCCCCc
Q 026705 151 QVSSALLAMALRALGS---NQGYSYDNDGE 177 (234)
Q Consensus 151 qllgiilA~~L~~~~~---~~~~~~d~~d~ 177 (234)
-++++.|.-+..+.-. ..+..||+||+
T Consensus 9 alLC~aLva~vQ~APQYa~GeeP~YDEdd~ 38 (65)
T PF10731_consen 9 ALLCVALVAIVQSAPQYAPGEEPSYDEDDD 38 (65)
T ss_pred HHHHHHHHHHHhcCcccCCCCCCCcCcccC
Confidence 3444444444443321 23334887773
No 51
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.21 E-value=3.2e+02 Score=22.39 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 026705 60 SFIGIGVTFCLITCLGHIAA 79 (234)
Q Consensus 60 ~li~vG~il~lvsflGc~GA 79 (234)
+.+++|+++++.|..++.-.
T Consensus 10 ~~iilgilli~~gI~~Lv~~ 29 (191)
T PF04156_consen 10 ILIILGILLIASGIAALVLF 29 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666554333
No 52
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.94 E-value=44 Score=23.20 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 026705 60 SFIGIGVTFCLITCLG 75 (234)
Q Consensus 60 ~li~vG~il~lvsflG 75 (234)
.+++-|++..+++..+
T Consensus 43 ~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 43 WYLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHHhHHHHHHHHHhh
Confidence 4677799988888764
No 53
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=24.75 E-value=2.6e+02 Score=24.22 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHH
Q 026705 12 FLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLI 71 (234)
Q Consensus 12 lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lv 71 (234)
+|.-..-..|+.-+.+-...+-.+.+..+-... +..+...+|.+|..|++.+.+++-
T Consensus 23 iLlG~CaaiWLa~lG~~VaA~VaL~Dlgrg~~~---~s~ss~T~WvLY~VI~VSaaVIag 79 (207)
T PF10812_consen 23 ILLGACAAIWLAALGVSVAATVALVDLGRGFHE---SSGSSGTPWVLYAVIGVSAAVIAG 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeecccCCccC---cCCCCCCCEeehHHHHHHHHHHHH
Confidence 334444456655555444455555554432221 122345789888888877666443
No 54
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=24.74 E-value=70 Score=25.21 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 026705 19 IMGIVGISMILYGIWM 34 (234)
Q Consensus 19 if~l~Gl~li~~Giw~ 34 (234)
+||=+|+++++|-+|-
T Consensus 21 ~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 21 VFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889999999999996
No 55
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.63 E-value=72 Score=25.03 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=3.7
Q ss_pred cCCCCccc
Q 026705 172 YDNDGEFL 179 (234)
Q Consensus 172 ~d~~d~~~ 179 (234)
||.+.+|.
T Consensus 78 Yd~~g~~~ 85 (130)
T PF12273_consen 78 YDQQGNFH 85 (130)
T ss_pred CCCCCCCC
Confidence 44444443
No 56
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.54 E-value=4.4e+02 Score=22.35 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhhhhHHH
Q 026705 9 LQSFLKALNLIMGIVGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASANGFCLS 88 (234)
Q Consensus 9 lK~lL~~~N~if~l~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en~c~L~ 88 (234)
+|.+ +++.++.|+++++-+++|---..+.++ . ..+.+| -|. - +.-++-+++|..+.-|.|.-.|.
T Consensus 37 lK~l-ifvh~lI~v~mlak~~l~hl~~~k~d~-v--------~~py~w-ey~--~--~~SllpslLgllsf~rnkv~~L~ 101 (183)
T KOG4054|consen 37 LKKL-IFVHALIWVLMLAKMSLGHLRLLKHDQ-V--------PMPYQW-EYV--W--ALSLLPSLLGLLSFRRNKVSYLV 101 (183)
T ss_pred HHHH-HHHHHHHHHHHHHHHhhhhhhhhhccc-C--------CCchhH-HHH--H--HHHHHHHHHHHHhcccccHHHHH
Confidence 4443 456678888888877744321111111 1 123333 232 1 22345678888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 026705 89 FYMLITCLLLLLETA 103 (234)
Q Consensus 89 ~Y~vll~ll~llEla 103 (234)
.|++-+++..+.-..
T Consensus 102 l~m~a~~lf~i~p~~ 116 (183)
T KOG4054|consen 102 LYMIAMGLFMIFPLV 116 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777755443
No 57
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=24.47 E-value=66 Score=26.26 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhhh
Q 026705 60 SFIGIGVTFCLITCLGHIAAASANG 84 (234)
Q Consensus 60 ~li~vG~il~lvsflGc~GA~~en~ 84 (234)
++|++|+++++-+ +.+..||+
T Consensus 111 liMGIGiFifIcA----navl~EnR 131 (141)
T PF10177_consen 111 LIMGIGIFIFICA----NAVLHENR 131 (141)
T ss_pred eEEecchhHHhHh----HHHhhhhc
Confidence 6799999998765 45666664
No 58
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=24.24 E-value=4.5e+02 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q 026705 18 LIMGIVGISMILYG 31 (234)
Q Consensus 18 ~if~l~Gl~li~~G 31 (234)
.+++.+|..++.+|
T Consensus 275 klLg~vGgi~LliG 288 (389)
T PRK15033 275 VLLGTLGGIGLLIG 288 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777777
No 59
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=22.49 E-value=1.4e+02 Score=18.24 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhh
Q 026705 59 CSFIGIGVTFCLITCLGHIAAASA 82 (234)
Q Consensus 59 y~li~vG~il~lvsflGc~GA~~e 82 (234)
++=+++|.+++++++.|.....++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 466889999999999998877654
No 60
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.02 E-value=4.7e+02 Score=23.04 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHhh
Q 026705 60 SFIGIGVTFCLITCLGHIAAAS 81 (234)
Q Consensus 60 ~li~vG~il~lvsflGc~GA~~ 81 (234)
+.++++++.|+.+++|-.|.-.
T Consensus 26 ~~~~~~~~~F~~~ml~~~G~r~ 47 (284)
T PF12805_consen 26 LILVLALLTFFFGMLGVYGPRA 47 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 4456666677777777666543
No 61
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.85 E-value=1.1e+02 Score=17.79 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 026705 18 LIMGIVGISMILYGIWMIRV 37 (234)
Q Consensus 18 ~if~l~Gl~li~~Giw~~~~ 37 (234)
..+.+.|+++++.+.++..+
T Consensus 11 ~~~~~~G~~l~~~~~~~~~~ 30 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLLLRK 30 (34)
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 34556677777777776544
No 62
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.72 E-value=2.7e+02 Score=18.45 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhcccccccccccCccCCCChhhHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 026705 23 VGISMILYGIWMIRVWQRDMEGQSFDDFCSINPWFICSFIGIGVTFCLITCLGHIAAASAN 83 (234)
Q Consensus 23 ~Gl~li~~Giw~~~~~~~~~~~~~~~~~~~~~~~~iy~li~vG~il~lvsflGc~GA~~en 83 (234)
.|+..+..|+++....+.. .......+|..+++-|..-...+.+++
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~---------------~~~~~~i~g~~~i~~Gi~~l~~~~~~~ 47 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDAS---------------LAALAIILGIWLIISGIFQLISAFRRR 47 (72)
T ss_pred HHHHHHHHHHHHHHhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788888899887654321 112456778888888888877777744
Done!