Query 026705
Match_columns 234
No_of_seqs 184 out of 1009
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uky_C Nuclear CAP-binding pro 74.5 1.7 5.9E-05 25.2 1.9 14 166-179 6-19 (32)
2 1g8q_A CD81 antigen, extracell 48.9 8.8 0.0003 26.5 2.1 16 121-136 74-89 (90)
3 3ukx_C Bimax2 peptide; arm rep 42.7 15 0.00052 20.3 1.9 12 168-179 10-21 (28)
4 3ukw_C Bimax1 peptide; arm rep 9.6 1.2E+02 0.004 16.7 1.1 10 168-177 10-19 (28)
5 1rh5_B Preprotein translocase 9.3 2.6E+02 0.009 19.2 3.1 19 59-77 36-54 (74)
6 3rko_J NADH-quinone oxidoreduc 8.4 7.3E+02 0.025 19.7 6.0 21 18-38 3-23 (184)
7 3mhs_B Protein SUS1; multi-pro 8.4 1.3E+02 0.0045 21.7 1.2 23 122-144 18-40 (96)
8 4dhx_B Enhancer of yellow 2 tr 8.2 1.3E+02 0.0046 21.8 1.2 23 122-144 22-44 (101)
9 1xrd_A LH-1, light-harvesting 8.2 2.3E+02 0.0079 18.3 2.2 15 60-74 13-27 (52)
10 2ww9_B Protein transport prote 8.1 3.1E+02 0.011 19.1 3.1 19 59-77 49-67 (80)
No 1
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=74.52 E-value=1.7 Score=25.20 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.8
Q ss_pred cCCCCccCCCCccc
Q 026705 166 SNQGYSYDNDGEFL 179 (234)
Q Consensus 166 ~~~~~~~d~~d~~~ 179 (234)
+.++.|||+||.|.
T Consensus 6 ~KRr~dfd~ddgYr 19 (32)
T 3uky_C 6 RKRRGDFDEDENYR 19 (32)
T ss_pred ccccccCccccccc
Confidence 45777899999874
No 2
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=48.89 E-value=8.8 Score=26.47 Aligned_cols=16 Identities=0% Similarity=-0.004 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHHHhc
Q 026705 121 DPTGRFHDFKKFVKSN 136 (234)
Q Consensus 121 ~~~GC~~~l~~fl~~n 136 (234)
+.+||.+++.+|+++|
T Consensus 74 ~~~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 74 FKEDCHQKIDDLFSGK 89 (90)
T ss_dssp TSCCHHHHHHHHHHTC
T ss_pred ccCCcHHHHHHHHHhC
Confidence 4579999999999987
No 3
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=42.75 E-value=15 Score=20.25 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.1
Q ss_pred CCCccCCCCccc
Q 026705 168 QGYSYDNDGEFL 179 (234)
Q Consensus 168 ~~~~~d~~d~~~ 179 (234)
+..+||+|||-.
T Consensus 10 rkrewdddddpp 21 (28)
T 3ukx_C 10 RKREWDDDDDPP 21 (28)
T ss_dssp CCCCCCCSSSCC
T ss_pred hhcccccCCCch
Confidence 445688888743
No 4
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=9.65 E-value=1.2e+02 Score=16.66 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=6.7
Q ss_pred CCCccCCCCc
Q 026705 168 QGYSYDNDGE 177 (234)
Q Consensus 168 ~~~~~d~~d~ 177 (234)
++-+||+|+|
T Consensus 10 rplewdedee 19 (28)
T 3ukw_C 10 RPLEWDEDEE 19 (28)
T ss_dssp CCCCCCGGGS
T ss_pred CCcccccccC
Confidence 5556887776
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.33 E-value=2.6e+02 Score=19.16 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 026705 59 CSFIGIGVTFCLITCLGHI 77 (234)
Q Consensus 59 y~li~vG~il~lvsflGc~ 77 (234)
-+..++|+-++++|++|+.
T Consensus 36 ~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888864
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=8.42 E-value=7.3e+02 Score=19.74 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 026705 18 LIMGIVGISMILYGIWMIRVW 38 (234)
Q Consensus 18 ~if~l~Gl~li~~Giw~~~~~ 38 (234)
++|++.+...+.-|+-+....
T Consensus 3 i~F~~~a~~~i~~al~vv~~~ 23 (184)
T 3rko_J 3 FAFYICGLIAILATLRVITHT 23 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred eHHHHHHHHHHHHHHHHHHcC
Confidence 455566665555555544433
No 7
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=8.37 E-value=1.3e+02 Score=21.67 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHhcccchhhHH
Q 026705 122 PTGRFHDFKKFVKSNFDIFKWIG 144 (234)
Q Consensus 122 ~~GC~~~l~~fl~~n~~i~~~v~ 144 (234)
.+|..+.+.+.+++.+.-|||.=
T Consensus 18 eSGe~erL~~lL~~rL~EcGW~D 40 (96)
T 3mhs_B 18 ESGNYELISNELKARLLQEGWVD 40 (96)
T ss_dssp HTTHHHHHHHHHHHHHHHTTHHH
T ss_pred HCCcHHHHHHHHHHHHHHCCcHH
Confidence 36999999999999999999964
No 8
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=8.19 E-value=1.3e+02 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHhcccchhhHH
Q 026705 122 PTGRFHDFKKFVKSNFDIFKWIG 144 (234)
Q Consensus 122 ~~GC~~~l~~fl~~n~~i~~~v~ 144 (234)
.+|..+++.+.+++.+.-|||.=
T Consensus 22 eSGe~erL~~lL~~rL~EcGW~D 44 (101)
T 4dhx_B 22 ETGERERLKELLRAKLIECGWKD 44 (101)
T ss_dssp HTTHHHHHHHHHHHHHHHTTHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCcHH
Confidence 46999999999999999999974
No 9
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=8.16 E-value=2.3e+02 Score=18.25 Aligned_cols=15 Identities=13% Similarity=0.507 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHh
Q 026705 60 SFIGIGVTFCLITCL 74 (234)
Q Consensus 60 ~li~vG~il~lvsfl 74 (234)
.+++.++++++++++
T Consensus 13 ~Lva~~~fl~vlAl~ 27 (52)
T 1xrd_A 13 ALVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456667777666654
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=8.10 E-value=3.1e+02 Score=19.12 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 026705 59 CSFIGIGVTFCLITCLGHI 77 (234)
Q Consensus 59 y~li~vG~il~lvsflGc~ 77 (234)
-+..++|+-++++|++|+.
T Consensus 49 ~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 49 KIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999875
Done!