Query 026705
Match_columns 234
No_of_seqs 184 out of 1009
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 20:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026705.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026705hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 12.3 62 0.0045 19.4 2.2 17 60-76 13-29 (52)
2 d1ow1a_ b.131.1.3 (A:) SMART/H 9.0 38 0.0027 25.4 0.4 11 217-227 56-66 (170)
3 d1v54m_ f.23.7.1 (M:) Mitochon 6.5 1.6E+02 0.012 16.7 2.4 18 61-78 14-31 (43)
4 d3cx5c1 f.32.1.1 (C:262-385) M 5.4 4.4E+02 0.032 17.7 6.8 38 60-97 64-105 (124)
5 d1rh5b_ f.23.28.1 (B:) Preprot 5.2 2.5E+02 0.019 16.7 2.9 26 135-160 22-47 (56)
6 d1y29a_ g.3.6.2 (A:) Huwentoxi 4.6 34 0.0025 17.5 -1.5 10 76-85 18-27 (28)
7 d1eyba_ b.82.1.4 (A:) Homogent 4.5 1.6E+02 0.011 25.0 2.0 47 171-221 12-64 (439)
8 d7reqa1 c.1.19.1 (A:4-560) Met 4.1 1.7E+02 0.013 25.4 1.9 7 215-221 80-86 (557)
9 d2axtd1 f.26.1.1 (D:13-352) Ph 3.2 1E+03 0.075 18.8 6.2 24 124-147 1-25 (340)
10 d2giab1 d.18.1.4 (B:28-173) GB 3.2 2.1E+02 0.015 19.8 1.3 34 184-221 28-62 (146)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=12.30 E-value=62 Score=19.37 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026705 60 SFIGIGVTFCLITCLGH 76 (234)
Q Consensus 60 ~li~vG~il~lvsflGc 76 (234)
++++.|+++++++++=+
T Consensus 13 ~lva~~~fL~~LAl~IH 29 (52)
T d1xrda1 13 ALVGLATFLFVLALLIH 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777888877776433
No 2
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein, SHARP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.04 E-value=38 Score=25.39 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=8.8
Q ss_pred ccccccCchhH
Q 026705 217 NVKIHFNPSQL 227 (234)
Q Consensus 217 ~~r~~~~~~~~ 227 (234)
..|||||++++
T Consensus 56 ~QRlRLd~~kL 66 (170)
T d1ow1a_ 56 AQRMRLEATQL 66 (170)
T ss_dssp CEEEECSHHHH
T ss_pred eeecccChHHH
Confidence 47899998775
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.50 E-value=1.6e+02 Score=16.70 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 026705 61 FIGIGVTFCLITCLGHIA 78 (234)
Q Consensus 61 li~vG~il~lvsflGc~G 78 (234)
=.++|...+.++|+|=.|
T Consensus 14 E~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 14 EQAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHH
Confidence 367888999999987655
No 4
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.36 E-value=4.4e+02 Score=17.66 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHhh----hhhhHHHHHHHHHHHH
Q 026705 60 SFIGIGVTFCLITCLGHIAAAS----ANGFCLSFYMLITCLL 97 (234)
Q Consensus 60 ~li~vG~il~lvsflGc~GA~~----en~c~L~~Y~vll~ll 97 (234)
.+....+..++++.+|.+.++. -++.+...|+.+.+++
T Consensus 64 ~fw~fv~~fi~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli~ 105 (124)
T d3cx5c1 64 FFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLII 105 (124)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444555566778888777654 3456666666665443
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.20 E-value=2.5e+02 Score=16.68 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=18.6
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHH
Q 026705 135 SNFDIFKWIGIWIISAQVSSALLAMA 160 (234)
Q Consensus 135 ~n~~i~~~v~l~v~~iqllgiilA~~ 160 (234)
|..++....|+|++++=++|.+.-.+
T Consensus 22 Ef~~ia~v~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 22 EYLAVAKVTALGISLLGIIGYIIHVP 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888776543
No 6
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=4.59 E-value=34 Score=17.48 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=5.6
Q ss_pred hhHHhhhhhh
Q 026705 76 HIAAASANGF 85 (234)
Q Consensus 76 c~GA~~en~c 85 (234)
|||....|+|
T Consensus 18 ccgvcshnkc 27 (28)
T d1y29a_ 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred ceeeeccccc
Confidence 5555555554
No 7
>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.51 E-value=1.6e+02 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=30.2
Q ss_pred ccCCCCccccccccccccCCCCCccc------cCCCCCCCCCCCCCCCccccccccc
Q 026705 171 SYDNDGEFLSDRLPLINHQVQAPAYV------IGDPPFAAKYDPVKPTAYAWNVKIH 221 (234)
Q Consensus 171 ~~d~~d~~~~~r~pl~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~w~~r~~ 221 (234)
++.|||+-.|.-+|--.+.+|..+|. .|..-.++|.. ..+.|=-|+|
T Consensus 12 ~f~se~~a~pgalP~gqnsPq~~~~GLYaEqlsGtaFtapr~~----n~rswlYRir 64 (439)
T d1eyba_ 12 ECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRST----NKRSWLYRIL 64 (439)
T ss_dssp CEEEECTTSTTCSCSSCSCCSSCGGGCEEEEEESSCTTSCGGG----CCEEEEEESS
T ss_pred ccccccccCCCCCCCCCCCCCcCCCCcchhhccCCccCCCCcc----CceeeecccC
Confidence 35555555677788877777877755 35555555554 3357777776
No 8
>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=4.05 E-value=1.7e+02 Score=25.39 Aligned_cols=7 Identities=14% Similarity=0.795 Sum_probs=6.5
Q ss_pred ccccccc
Q 026705 215 AWNVKIH 221 (234)
Q Consensus 215 ~w~~r~~ 221 (234)
.|.+|.|
T Consensus 80 ~W~i~q~ 86 (557)
T d7reqa1 80 PWTIRQY 86 (557)
T ss_dssp CCEECCE
T ss_pred CCceEEe
Confidence 8999998
No 9
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2 protein PsbD2 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.17 E-value=1e+03 Score=18.79 Aligned_cols=24 Identities=29% Similarity=0.698 Sum_probs=18.4
Q ss_pred ChHHHHHHHHH-hcccchhhHHHHH
Q 026705 124 GRFHDFKKFVK-SNFDIFKWIGIWI 147 (234)
Q Consensus 124 GC~~~l~~fl~-~n~~i~~~v~l~v 147 (234)
|-+|.+.+|++ ||.-.+||.|+..
T Consensus 1 g~~d~~D~W~~~d~fiYvGWfGvl~ 25 (340)
T d2axtd1 1 GWFDILDDWLKRDRFVFVGWSGILL 25 (340)
T ss_dssp CCHHHHHHHHTSCCSSCCTTTHHHH
T ss_pred CCcchhhhhcCCCceEEEeeeHHHH
Confidence 34677888887 6778999999854
No 10
>d2giab1 d.18.1.4 (B:28-173) GBP21 {Trypanosoma brucei [TaxId: 5691]}
Probab=3.17 E-value=2.1e+02 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=15.6
Q ss_pred cccccC-CCCCccccCCCCCCCCCCCCCCCccccccccc
Q 026705 184 PLINHQ-VQAPAYVIGDPPFAAKYDPVKPTAYAWNVKIH 221 (234)
Q Consensus 184 pl~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~w~~r~~ 221 (234)
-||-+| +|-.|.-+.+....++-| .++--|.|||
T Consensus 28 ~llvsq~pqlgprk~dpnd~tpqfd----~drris~r~r 62 (146)
T d2giab1 28 LLLISQYPQLGPRKVDPNDLSPQFD----ADRRISVRLR 62 (146)
T ss_dssp EEEEEEEEBCSSCCCCTTCCSCSBC----GGGCEEEECC
T ss_pred EEeeeeCcccCCCcCCCCcCCcccc----ccceeEEEEe
Confidence 455554 565554332222223333 4454566666
Done!