BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026707
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 22/236 (9%)
Query: 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPS----TSI 67
++ H +++ YP QGHINPL + AK L +G +T V T + K L + + T
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 68 SLEAISDGYD--EGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSG--VPVDCIVYDS 123
+ E+I DG EG ++ V + + + CEL+ +N S PV C+V D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 124 FLPWALDVAKKFGLVGAAFLTQSC--VVDCIYYH--VNKGXXXXXXXXXXXX-------- 171
+ + + A++F L + + S +++ +++ V +G
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 172 -XPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKEL 226
PG+ +D+ F+ + + ++ D ++K +L NTF ELE ++
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVA-DRVNKDTTILLNTFNELESDV 241
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 29/242 (11%)
Query: 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKV--TLVTTYFISKSLHRDS-SSPSTSISLEA 71
H VL++P H PLL +RL + +T + S+ DS + +I
Sbjct: 9 HVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYD 68
Query: 72 ISDGYDEG----GSAQTEGVEAYLERFWQIGPRSLCE-LVENMNGSGVPVDCIVYDSFLP 126
ISDG EG G Q + +E F + P S + +V + +G PV C+V D+F+
Sbjct: 69 ISDGVPEGYVFAGRPQED-----IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIW 123
Query: 127 WALDVAKKFGLVGAAF-------LTQSCVVDCIYYHVNKGXXXXXXXXXXXXXPGMPPLE 179
+A D+A + G+ F L+ +D I + PGM +
Sbjct: 124 FAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVR 183
Query: 180 PQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELE--------KELNGWVN 231
+D+ + G+ ++ ++ + KA V N+F EL+ +L ++N
Sbjct: 184 FRDLQEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLN 242
Query: 232 IG 233
IG
Sbjct: 243 IG 244
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 87/228 (38%), Gaps = 29/228 (12%)
Query: 12 KRVHCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSLHRDSSSPSTSISLE 70
K H ++ P GH+ PL++FAKRL H GL VT V S + + S S+
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 71 AI----SDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMN----GSGVPVDCIVYD 122
++ D D S + E R RS EL + + G +P +V D
Sbjct: 65 SVFLPPVDLTDLSSSTRIES------RISLTVTRSNPELRKVFDSFVEGGRLPT-ALVVD 117
Query: 123 SFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGXXXXX----XXXXXXXXPGMPPL 178
F A DVA +F + F + V + H+ K PG P+
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPV 177
Query: 179 EPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDK---ADWVLCNTFYELE 223
+D D D K+ N + A+ +L NTF+ELE
Sbjct: 178 AGKDFLDPAQDR------KDDAYKWLLHNTKRYKEAEGILVNTFFELE 219
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 31/247 (12%)
Query: 1 MENIEKKAASCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKV--TLVTTYFISKSLHR 58
M + + +H VL++P H PLL K++ + KV + T + +L
Sbjct: 1 MSTFKNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFS 60
Query: 59 DSSSPSTSISLEAISDGYDEGGSAQTEG-------VEAYLERFWQIGPRSLCELVENMNG 111
S+ +I + DG +G + ++A E F + ++ E
Sbjct: 61 RSNEFLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE------- 113
Query: 112 SGVPVDCIVYDSFLPWALDVAKKFG-------LVGAAFLTQSCVVDCIYYHVNKGXXXXX 164
+G + C+V D+F + D+A++ G L D I G
Sbjct: 114 TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKT--GSKEVH 171
Query: 165 XXXXXXXXPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYE--- 221
PG P L+ D+P V P + M+ K + + +A+ V N+F
Sbjct: 172 DVKSIDVLPGFPELKASDLPEGVIKDIDVP-FATMLHKMGLE-LPRANAVAINSFATIHP 229
Query: 222 -LEKELN 227
+E ELN
Sbjct: 230 LIENELN 236
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 5 EKKAASCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSP 63
E ++AS H + P GH+NP L + L +G +V+ T + + ++P
Sbjct: 4 EHRSASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATP 62
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEA 71
++ H L + GH+ P L L +G ++T VTT + + ++ + + ++
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV---KAAGAEVVLYKS 59
Query: 72 ISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSF 124
D + + E E L + ++ E G P D +VYD F
Sbjct: 60 EFDTFHVPEVVKQEDAETQLHLVYVRENVAILRAAEEALGDN-PPDLVVYDVF 111
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVT 45
H + S A GH+NP L+ + L +G +VT
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVT 39
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 18 VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDG 75
VLS G ++ ++LE GLKVT++ Y S S++ +T+ +++G
Sbjct: 542 VLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEG 599
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 101 SLCELVENMNGSGVPVDCIVYDSFL 125
SL +LV++ GVP+DC+ + S L
Sbjct: 182 SLYDLVKDFKARGVPLDCVGFQSHL 206
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 101 SLCELVENMNGSGVPVDCIVYDSFL 125
SL +LV++ GVP+DC+ + S L
Sbjct: 182 SLYDLVKDFKARGVPLDCVGFQSHL 206
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 73 SDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSG 113
SD YD G+A + AY++ F+Q G + L EL+ ++ +G
Sbjct: 76 SDDYDNEGAASSNPQSAYVKAFYQKGNK-LVELMRIISRNG 115
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 101 SLCELVENMNGSGVPVDCIVYDSFL 125
SL +LV++ GVP+DC+ + S L
Sbjct: 182 SLYDLVKDFKARGVPLDCVGFQSNL 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,971,929
Number of Sequences: 62578
Number of extensions: 269409
Number of successful extensions: 515
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 13
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)