Query 026707
Match_columns 234
No_of_seqs 236 out of 1532
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 8.8E-42 1.9E-46 305.5 23.7 220 11-232 5-235 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 1.5E-41 3.2E-46 301.8 23.1 213 11-232 3-215 (449)
3 PLN02152 indole-3-acetate beta 100.0 5.2E-40 1.1E-44 292.4 22.3 212 12-232 2-218 (455)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.9E-39 6.3E-44 289.7 21.4 218 9-232 5-236 (477)
5 PLN02562 UDP-glycosyltransfera 100.0 1.1E-38 2.4E-43 284.5 23.2 216 11-232 4-227 (448)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.9E-38 4.1E-43 282.7 23.2 213 11-232 5-225 (451)
7 PLN00164 glucosyltransferase; 100.0 4.7E-38 1E-42 282.5 20.7 213 12-233 2-229 (480)
8 PLN03004 UDP-glycosyltransfera 100.0 1.1E-37 2.5E-42 277.1 22.1 217 12-232 2-230 (451)
9 PLN02534 UDP-glycosyltransfera 100.0 7.9E-38 1.7E-42 280.5 20.4 213 12-232 7-237 (491)
10 PLN02992 coniferyl-alcohol glu 100.0 1.2E-37 2.6E-42 278.4 20.7 210 12-232 4-222 (481)
11 PLN02670 transferase, transfer 100.0 1.2E-37 2.7E-42 278.0 20.0 213 11-232 4-235 (472)
12 PLN02210 UDP-glucosyl transfer 100.0 1.3E-36 2.9E-41 271.6 22.3 212 10-232 5-221 (456)
13 PLN03015 UDP-glucosyl transfer 100.0 2E-36 4.2E-41 269.5 21.5 213 12-232 2-226 (470)
14 PLN02207 UDP-glycosyltransfera 100.0 2.3E-36 4.9E-41 269.7 21.9 215 12-232 2-233 (468)
15 PLN02554 UDP-glycosyltransfera 100.0 7.5E-36 1.6E-40 268.8 21.4 209 13-232 2-232 (481)
16 PLN02448 UDP-glycosyltransfera 100.0 1.3E-35 2.8E-40 266.1 22.2 213 11-232 8-230 (459)
17 PLN02167 UDP-glycosyltransfera 100.0 1E-35 2.2E-40 267.5 20.9 215 12-232 2-237 (475)
18 PLN02764 glycosyltransferase f 100.0 2.8E-35 6.2E-40 261.2 20.7 206 11-232 3-221 (453)
19 PLN02208 glycosyltransferase f 100.0 1E-34 2.2E-39 258.2 20.8 201 12-232 3-215 (442)
20 PLN00414 glycosyltransferase f 100.0 1.3E-34 2.9E-39 257.7 19.4 202 11-232 2-214 (446)
21 PLN03007 UDP-glucosyltransfera 100.0 4.8E-33 1E-37 250.8 21.6 214 11-232 3-239 (482)
22 cd03784 GT1_Gtf_like This fami 99.6 1.2E-15 2.7E-20 134.7 8.7 126 14-147 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 1.2E-14 2.6E-19 128.2 10.2 119 19-145 1-122 (392)
24 KOG1192 UDP-glucuronosyl and U 99.4 1.3E-14 2.7E-19 131.7 -0.8 144 13-157 5-157 (496)
25 PF03033 Glyco_transf_28: Glyc 99.2 1.7E-12 3.6E-17 98.0 0.1 122 16-147 1-132 (139)
26 PHA03392 egt ecdysteroid UDP-g 98.8 5.5E-08 1.2E-12 88.7 11.3 129 12-147 19-169 (507)
27 PF00201 UDPGT: UDP-glucoronos 98.7 1.2E-09 2.5E-14 99.5 -1.3 123 15-144 2-148 (500)
28 COG1819 Glycosyl transferases, 98.3 8.1E-07 1.8E-11 79.0 5.7 55 13-73 1-55 (406)
29 TIGR00661 MJ1255 conserved hyp 98.3 7.2E-06 1.6E-10 70.6 10.6 118 16-146 2-123 (321)
30 PF13528 Glyco_trans_1_3: Glyc 98.3 1.2E-05 2.6E-10 68.7 11.4 120 15-147 2-125 (318)
31 PRK12446 undecaprenyldiphospho 97.8 0.00038 8.3E-09 60.8 12.8 121 15-150 3-128 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.5 0.0028 6.1E-08 55.4 12.6 122 15-148 2-126 (357)
33 cd03785 GT1_MurG MurG is an N- 97.3 0.0045 9.8E-08 53.3 11.6 116 15-142 1-118 (350)
34 TIGR01133 murG undecaprenyldip 97.1 0.012 2.6E-07 50.7 12.4 115 15-142 2-119 (348)
35 PRK00726 murG undecaprenyldiph 96.9 0.022 4.8E-07 49.4 12.5 116 14-142 2-120 (357)
36 cd03818 GT1_ExpC_like This fam 96.8 0.035 7.6E-07 48.9 12.8 103 30-143 13-116 (396)
37 TIGR00215 lpxB lipid-A-disacch 96.1 0.055 1.2E-06 47.9 9.9 37 14-51 6-42 (385)
38 cd03816 GT1_ALG1_like This fam 95.3 0.41 9E-06 42.6 12.4 58 13-73 3-60 (415)
39 TIGR03590 PseG pseudaminic aci 95.3 0.12 2.7E-06 43.6 8.5 32 22-53 12-43 (279)
40 cd03823 GT1_ExpE7_like This fa 95.2 0.33 7.1E-06 41.0 11.3 30 24-53 15-44 (359)
41 cd03800 GT1_Sucrose_synthase T 94.9 0.26 5.7E-06 42.7 9.9 108 24-142 21-130 (398)
42 PRK00025 lpxB lipid-A-disaccha 94.6 0.24 5.2E-06 43.2 8.9 35 15-50 3-37 (380)
43 COG4671 Predicted glycosyl tra 94.4 0.22 4.7E-06 43.2 7.8 59 11-74 7-69 (400)
44 PRK10307 putative glycosyl tra 93.0 1.5 3.3E-05 38.7 11.2 22 30-51 21-42 (412)
45 PF12000 Glyco_trans_4_3: Gkyc 92.9 1.7 3.6E-05 34.1 9.8 92 39-143 1-95 (171)
46 TIGR02468 sucrsPsyn_pln sucros 92.4 2 4.4E-05 42.8 11.6 118 25-143 196-340 (1050)
47 PLN00142 sucrose synthase 92.2 1.5 3.2E-05 42.6 10.3 31 114-144 407-439 (815)
48 cd03794 GT1_wbuB_like This fam 92.1 1.9 4.1E-05 36.5 10.2 30 24-53 14-43 (394)
49 PF13477 Glyco_trans_4_2: Glyc 91.9 3.8 8.3E-05 29.9 10.7 99 16-141 2-104 (139)
50 TIGR03449 mycothiol_MshA UDP-N 91.3 2.6 5.7E-05 37.0 10.5 112 23-144 19-132 (405)
51 TIGR02470 sucr_synth sucrose s 91.3 7.7 0.00017 37.7 14.1 119 14-141 256-413 (784)
52 PLN02275 transferase, transfer 90.2 10 0.00022 33.1 13.1 58 11-73 4-62 (371)
53 cd03805 GT1_ALG2_like This fam 89.8 6.6 0.00014 34.0 11.6 36 15-50 2-39 (392)
54 cd03796 GT1_PIG-A_like This fa 89.2 5.8 0.00013 34.9 10.9 101 25-142 15-119 (398)
55 PF04007 DUF354: Protein of un 88.8 4.8 0.0001 35.0 9.7 103 25-148 11-115 (335)
56 TIGR02472 sucr_P_syn_N sucrose 88.2 7 0.00015 35.0 10.8 110 25-143 27-144 (439)
57 PF13579 Glyco_trans_4_4: Glyc 87.3 0.83 1.8E-05 33.7 3.7 95 29-142 6-102 (160)
58 cd04962 GT1_like_5 This family 85.7 1 2.3E-05 38.6 4.0 37 15-51 2-39 (371)
59 cd03814 GT1_like_2 This family 85.5 1.5 3.2E-05 37.1 4.8 29 24-52 14-42 (364)
60 PRK13609 diacylglycerol glucos 84.1 1.7 3.6E-05 38.0 4.6 40 11-50 2-42 (380)
61 TIGR03600 phage_DnaB phage rep 83.5 5.2 0.00011 35.8 7.5 55 2-56 182-238 (421)
62 cd03802 GT1_AviGT4_like This f 83.4 18 0.00039 30.3 10.6 27 25-51 20-46 (335)
63 PRK02261 methylaspartate mutas 83.4 2.9 6.3E-05 31.4 5.0 45 12-56 2-46 (137)
64 PF13439 Glyco_transf_4: Glyco 83.1 1.6 3.4E-05 32.8 3.5 29 25-53 13-41 (177)
65 cd03801 GT1_YqgM_like This fam 82.5 14 0.00031 30.6 9.5 30 24-53 14-43 (374)
66 cd03808 GT1_cap1E_like This fa 82.4 2 4.3E-05 35.9 4.2 54 15-73 1-54 (359)
67 COG3980 spsG Spore coat polysa 81.9 1.6 3.5E-05 36.9 3.3 34 21-54 12-45 (318)
68 cd03817 GT1_UGDG_like This fam 81.6 2.6 5.7E-05 35.5 4.8 33 20-52 10-42 (374)
69 cd02067 B12-binding B12 bindin 81.5 2.7 5.8E-05 30.3 4.1 39 15-53 1-39 (119)
70 cd03819 GT1_WavL_like This fam 81.1 16 0.00034 30.9 9.4 97 25-144 11-109 (355)
71 PRK06321 replicative DNA helic 80.5 7.6 0.00017 35.5 7.5 54 3-56 215-270 (472)
72 PLN02871 UDP-sulfoquinovose:DA 79.2 4.1 8.8E-05 36.8 5.4 41 11-51 56-101 (465)
73 smart00851 MGS MGS-like domain 79.1 14 0.00031 25.1 6.9 26 30-57 2-27 (90)
74 COG1703 ArgK Putative periplas 77.5 6.7 0.00015 33.5 5.7 51 5-55 42-93 (323)
75 cd04951 GT1_WbdM_like This fam 77.1 3.2 6.9E-05 35.2 3.9 27 24-50 12-38 (360)
76 PRK13932 stationary phase surv 77.0 43 0.00093 28.0 11.0 42 12-56 4-46 (257)
77 TIGR02370 pyl_corrinoid methyl 76.0 5.7 0.00012 31.7 4.7 45 12-56 83-127 (197)
78 cd02070 corrinoid_protein_B12- 75.7 5.8 0.00013 31.7 4.8 44 13-56 82-125 (201)
79 PRK06904 replicative DNA helic 75.3 10 0.00022 34.7 6.7 54 3-56 210-265 (472)
80 PRK08506 replicative DNA helic 75.1 8.1 0.00018 35.3 6.0 54 3-56 181-235 (472)
81 cd04955 GT1_like_6 This family 73.2 8.9 0.00019 32.5 5.6 45 25-73 16-60 (363)
82 cd03806 GT1_ALG11_like This fa 71.9 65 0.0014 28.7 11.0 109 28-146 18-139 (419)
83 PRK08760 replicative DNA helic 71.8 10 0.00022 34.7 5.9 54 3-56 218-273 (476)
84 PRK05749 3-deoxy-D-manno-octul 70.6 23 0.00051 31.4 7.9 100 15-143 51-154 (425)
85 cd01635 Glycosyltransferase_GT 69.2 8 0.00017 30.0 4.2 26 23-48 12-37 (229)
86 PF02310 B12-binding: B12 bind 69.1 14 0.00031 26.3 5.2 37 15-51 2-38 (121)
87 cd03821 GT1_Bme6_like This fam 68.2 8.4 0.00018 32.3 4.4 31 23-53 13-43 (375)
88 cd01424 MGS_CPS_II Methylglyox 68.1 40 0.00086 23.8 7.6 84 25-141 10-100 (110)
89 TIGR00715 precor6x_red precorr 67.7 45 0.00098 27.8 8.4 24 30-53 12-35 (256)
90 cd03795 GT1_like_4 This family 66.1 10 0.00022 32.0 4.5 31 23-53 13-43 (357)
91 cd03825 GT1_wcfI_like This fam 65.5 11 0.00024 32.0 4.6 38 15-52 2-41 (365)
92 PF07894 DUF1669: Protein of u 65.3 8.2 0.00018 32.7 3.6 48 99-146 132-184 (284)
93 PRK05636 replicative DNA helic 65.1 11 0.00024 34.8 4.6 54 3-56 254-309 (505)
94 PF02441 Flavoprotein: Flavopr 64.3 14 0.00031 27.1 4.4 42 15-57 2-43 (129)
95 COG1618 Predicted nucleotide k 62.6 70 0.0015 25.0 7.8 39 12-50 4-42 (179)
96 PF09314 DUF1972: Domain of un 62.4 14 0.00031 29.2 4.2 42 28-73 21-62 (185)
97 cd03811 GT1_WabH_like This fam 61.9 15 0.00033 30.3 4.7 31 23-53 11-41 (353)
98 PRK00654 glgA glycogen synthas 61.4 14 0.00031 33.4 4.7 27 25-51 18-44 (466)
99 PRK13933 stationary phase surv 61.4 96 0.0021 25.9 9.9 25 30-55 16-40 (253)
100 cd02071 MM_CoA_mut_B12_BD meth 61.3 17 0.00036 26.4 4.3 42 15-56 1-42 (122)
101 cd03820 GT1_amsD_like This fam 60.9 16 0.00035 30.1 4.7 30 24-53 13-42 (348)
102 PLN02846 digalactosyldiacylgly 60.3 17 0.00036 33.2 4.9 41 11-51 2-47 (462)
103 cd02069 methionine_synthase_B1 59.6 21 0.00045 28.9 4.9 45 12-56 87-131 (213)
104 COG1817 Uncharacterized protei 58.7 1.2E+02 0.0027 26.3 9.5 105 25-149 11-117 (346)
105 COG1484 DnaC DNA replication p 58.3 15 0.00032 30.6 3.9 46 12-57 104-149 (254)
106 cd01425 RPS2 Ribosomal protein 58.1 41 0.00089 26.7 6.3 33 114-146 126-160 (193)
107 COG0299 PurN Folate-dependent 57.4 24 0.00051 28.3 4.7 46 101-146 13-60 (200)
108 PRK07773 replicative DNA helic 57.3 29 0.00063 34.4 6.3 41 16-56 220-261 (886)
109 PRK13935 stationary phase surv 57.1 1.1E+02 0.0025 25.4 9.8 26 30-56 16-41 (253)
110 PF04244 DPRP: Deoxyribodipyri 56.8 11 0.00025 30.7 2.9 27 25-51 46-72 (224)
111 PRK09165 replicative DNA helic 56.4 38 0.00081 31.2 6.5 54 3-56 206-275 (497)
112 cd03786 GT1_UDP-GlcNAc_2-Epime 55.6 30 0.00065 29.6 5.6 29 22-50 7-36 (363)
113 PF08323 Glyco_transf_5: Starc 54.8 11 0.00025 31.0 2.7 24 28-51 20-43 (245)
114 cd03791 GT1_Glycogen_synthase_ 54.7 13 0.00027 33.6 3.2 24 28-51 20-43 (476)
115 COG2185 Sbm Methylmalonyl-CoA 51.9 30 0.00064 26.2 4.2 40 11-50 10-49 (143)
116 PF12146 Hydrolase_4: Putative 51.3 27 0.00059 23.3 3.6 33 14-46 16-48 (79)
117 PF04127 DFP: DNA / pantothena 50.7 18 0.00039 28.6 3.1 21 31-51 33-53 (185)
118 PF06506 PrpR_N: Propionate ca 50.4 27 0.0006 27.1 4.1 111 25-146 17-153 (176)
119 TIGR02015 BchY chlorophyllide 49.1 87 0.0019 28.2 7.6 32 14-50 286-317 (422)
120 cd03798 GT1_wlbH_like This fam 47.6 29 0.00063 28.8 4.2 31 23-53 13-43 (377)
121 PRK13931 stationary phase surv 47.3 1.7E+02 0.0037 24.5 10.0 98 30-144 16-129 (261)
122 TIGR02095 glgA glycogen/starch 47.0 20 0.00043 32.4 3.2 27 25-51 18-44 (473)
123 cd01018 ZntC Metal binding pro 46.4 69 0.0015 26.6 6.2 50 101-152 205-256 (266)
124 cd03799 GT1_amsK_like This is 45.8 45 0.00098 28.0 5.1 27 26-52 13-39 (355)
125 COG0162 TyrS Tyrosyl-tRNA synt 45.3 24 0.00051 31.6 3.3 36 15-51 36-74 (401)
126 cd01421 IMPCH Inosine monophos 44.7 85 0.0018 24.9 6.0 37 29-73 12-48 (187)
127 PF02603 Hpr_kinase_N: HPr Ser 44.5 25 0.00054 25.9 2.9 42 102-144 70-113 (127)
128 PF08660 Alg14: Oligosaccharid 44.3 1.2E+02 0.0026 23.5 6.8 29 21-49 5-34 (170)
129 cd03812 GT1_CapH_like This fam 44.2 28 0.00061 29.4 3.6 32 22-53 10-41 (358)
130 PF01975 SurE: Survival protei 44.0 26 0.00056 28.0 3.1 106 30-147 16-136 (196)
131 PLN02891 IMP cyclohydrolase 43.3 63 0.0014 30.0 5.7 40 27-74 32-71 (547)
132 PRK08305 spoVFB dipicolinate s 42.4 47 0.001 26.6 4.3 41 13-54 5-46 (196)
133 TIGR00679 hpr-ser Hpr(Ser) kin 42.3 1.7E+02 0.0036 25.2 7.8 48 100-148 69-118 (304)
134 PF00070 Pyr_redox: Pyridine n 41.9 42 0.00092 22.0 3.5 24 29-52 10-33 (80)
135 PF10657 RC-P840_PscD: Photosy 41.6 43 0.00094 24.5 3.5 44 10-53 43-86 (144)
136 PF03796 DnaB_C: DnaB-like hel 41.1 74 0.0016 26.1 5.6 55 2-56 7-63 (259)
137 TIGR00355 purH phosphoribosyla 40.9 83 0.0018 29.1 6.1 37 29-73 12-48 (511)
138 cd03807 GT1_WbnK_like This fam 40.9 49 0.0011 27.4 4.6 32 21-52 9-40 (365)
139 PF13450 NAD_binding_8: NAD(P) 40.6 39 0.00084 21.7 3.0 20 31-50 9-28 (68)
140 PRK07313 phosphopantothenoylcy 40.0 46 0.00099 26.2 3.9 41 15-56 3-43 (182)
141 PTZ00445 p36-lilke protein; Pr 38.6 37 0.00079 27.6 3.1 28 25-52 74-102 (219)
142 COG0052 RpsB Ribosomal protein 38.1 54 0.0012 27.2 4.1 32 115-146 156-189 (252)
143 COG0467 RAD55 RecA-superfamily 37.9 55 0.0012 27.0 4.3 45 13-57 23-67 (260)
144 cd02065 B12-binding_like B12 b 37.7 67 0.0015 22.7 4.3 37 16-52 2-38 (125)
145 PF08026 Antimicrobial_5: Bee 37.5 4.7 0.0001 22.5 -1.5 23 19-41 16-38 (39)
146 KOG2941 Beta-1,4-mannosyltrans 37.5 1.2E+02 0.0027 26.8 6.2 58 11-73 10-69 (444)
147 COG4088 Predicted nucleotide k 37.3 48 0.001 27.1 3.6 36 14-49 2-37 (261)
148 cd00615 Orn_deC_like Ornithine 36.9 61 0.0013 27.2 4.5 40 3-42 144-184 (294)
149 COG4081 Uncharacterized protei 36.7 70 0.0015 23.9 4.0 39 18-56 8-47 (148)
150 PF00448 SRP54: SRP54-type pro 36.6 72 0.0016 25.3 4.6 38 16-53 4-41 (196)
151 cd03822 GT1_ecORF704_like This 36.6 59 0.0013 27.2 4.4 29 24-52 13-41 (366)
152 cd02034 CooC The accessory pro 36.2 94 0.002 22.3 4.8 37 15-51 1-37 (116)
153 TIGR00234 tyrS tyrosyl-tRNA sy 36.1 34 0.00073 30.3 2.8 25 25-50 47-71 (377)
154 TIGR03087 stp1 sugar transfera 36.0 30 0.00065 30.3 2.6 32 19-51 8-40 (397)
155 PRK09620 hypothetical protein; 35.8 42 0.0009 27.5 3.1 20 31-50 33-52 (229)
156 PRK14089 ipid-A-disaccharide s 35.2 64 0.0014 28.2 4.4 33 114-146 75-112 (347)
157 PRK01021 lpxB lipid-A-disaccha 35.0 1.3E+02 0.0029 28.5 6.6 41 102-144 299-344 (608)
158 TIGR02852 spore_dpaB dipicolin 34.6 62 0.0013 25.7 3.8 39 15-53 2-40 (187)
159 PRK04940 hypothetical protein; 34.6 83 0.0018 24.8 4.5 35 116-150 61-96 (180)
160 PRK06732 phosphopantothenate-- 34.6 43 0.00093 27.3 3.0 20 31-50 30-49 (229)
161 PRK09361 radB DNA repair and r 34.1 1.4E+02 0.003 23.8 6.0 49 2-50 10-60 (225)
162 PF03720 UDPG_MGDP_dh_C: UDP-g 34.0 56 0.0012 23.0 3.2 26 28-53 17-42 (106)
163 TIGR02113 coaC_strep phosphopa 33.8 56 0.0012 25.6 3.5 35 22-56 8-42 (177)
164 PF03308 ArgK: ArgK protein; 33.5 1.5E+02 0.0033 24.9 6.0 44 11-54 26-70 (266)
165 PF03853 YjeF_N: YjeF-related 33.3 50 0.0011 25.5 3.1 38 10-49 22-60 (169)
166 PF06415 iPGM_N: BPG-independe 33.2 1E+02 0.0022 25.2 4.9 33 11-43 27-61 (223)
167 cd00861 ProRS_anticodon_short 33.0 1E+02 0.0022 20.6 4.4 35 14-48 2-38 (94)
168 PF08897 DUF1841: Domain of un 33.0 31 0.00067 25.9 1.7 18 22-39 57-74 (137)
169 PF01555 N6_N4_Mtase: DNA meth 32.5 70 0.0015 25.1 4.0 41 101-145 180-222 (231)
170 cd01981 Pchlide_reductase_B Pc 32.1 76 0.0016 28.4 4.5 26 114-142 369-394 (430)
171 PF02310 B12-binding: B12 bind 31.9 63 0.0014 22.8 3.3 44 4-48 43-86 (121)
172 PF06925 MGDG_synth: Monogalac 31.9 1.1E+02 0.0024 23.3 4.9 24 26-49 1-27 (169)
173 PLN02331 phosphoribosylglycina 31.6 1E+02 0.0022 24.9 4.7 44 101-144 12-57 (207)
174 TIGR00421 ubiX_pad polyprenyl 31.5 55 0.0012 25.7 3.1 31 25-56 11-41 (181)
175 cd02067 B12-binding B12 bindin 31.4 98 0.0021 22.0 4.2 41 10-50 47-88 (119)
176 cd05844 GT1_like_7 Glycosyltra 31.3 2.6E+02 0.0056 23.6 7.6 29 114-142 81-111 (367)
177 cd03115 SRP The signal recogni 31.3 1.1E+02 0.0024 23.2 4.8 38 16-53 3-40 (173)
178 TIGR03492 conserved hypothetic 31.2 3.7E+02 0.0081 23.8 8.8 102 28-144 11-121 (396)
179 PF09001 DUF1890: Domain of un 31.2 34 0.00075 25.7 1.7 31 28-58 14-44 (139)
180 CHL00175 minD septum-site dete 31.2 1.2E+02 0.0027 25.1 5.4 47 5-51 6-54 (281)
181 COG0062 Uncharacterized conser 31.1 1.5E+02 0.0033 23.9 5.5 47 4-52 40-87 (203)
182 TIGR00064 ftsY signal recognit 31.0 1.3E+02 0.0028 25.3 5.4 38 15-52 74-111 (272)
183 TIGR01007 eps_fam capsular exo 31.0 1.3E+02 0.0029 23.5 5.4 38 14-51 17-56 (204)
184 PF01380 SIS: SIS domain SIS d 30.9 1.1E+02 0.0024 21.7 4.5 31 23-53 62-92 (131)
185 PF02951 GSH-S_N: Prokaryotic 30.6 1.4E+02 0.003 21.8 4.9 25 28-52 18-42 (119)
186 COG2085 Predicted dinucleotide 30.1 49 0.0011 26.8 2.6 23 31-53 14-36 (211)
187 PF02780 Transketolase_C: Tran 29.9 1.2E+02 0.0026 21.8 4.5 38 11-50 7-44 (124)
188 PRK00881 purH bifunctional pho 29.9 1.7E+02 0.0038 27.1 6.3 38 28-73 15-52 (513)
189 PF00391 PEP-utilizers: PEP-ut 29.5 82 0.0018 20.9 3.3 28 115-142 30-59 (80)
190 TIGR02329 propionate_PrpR prop 29.4 1.4E+02 0.003 27.8 5.8 41 100-145 132-172 (526)
191 PF00919 UPF0004: Uncharacteri 29.4 33 0.00072 24.0 1.4 16 208-223 34-49 (98)
192 PF12695 Abhydrolase_5: Alpha/ 29.3 1.5E+02 0.0033 21.0 5.1 27 22-48 7-33 (145)
193 PRK05428 HPr kinase/phosphoryl 29.3 3.5E+02 0.0076 23.3 7.8 49 99-148 68-118 (308)
194 TIGR00639 PurN phosphoribosylg 29.1 1.5E+02 0.0032 23.5 5.2 44 101-144 13-58 (190)
195 PRK00771 signal recognition pa 29.1 1.3E+02 0.0028 27.3 5.4 40 14-53 96-135 (437)
196 cd01141 TroA_d Periplasmic bin 28.7 1E+02 0.0022 23.7 4.2 31 114-144 68-100 (186)
197 TIGR00347 bioD dethiobiotin sy 28.3 1.4E+02 0.003 22.4 4.9 26 22-47 7-32 (166)
198 PRK13479 2-aminoethylphosphona 28.0 1E+02 0.0022 26.6 4.5 41 2-42 120-162 (368)
199 COG2910 Putative NADH-flavin r 28.0 61 0.0013 25.9 2.7 33 15-51 2-34 (211)
200 PRK06222 ferredoxin-NADP(+) re 27.8 1.3E+02 0.0028 25.2 4.9 38 14-53 99-136 (281)
201 PF02142 MGS: MGS-like domain 27.6 61 0.0013 22.2 2.5 35 30-72 2-36 (95)
202 COG1797 CobB Cobyrinic acid a, 27.6 1.1E+02 0.0024 27.7 4.6 28 18-45 6-33 (451)
203 PLN02939 transferase, transfer 27.4 1.4E+02 0.0031 30.0 5.6 40 12-51 480-525 (977)
204 KOG0991 Replication factor C, 27.1 82 0.0018 26.4 3.4 32 9-40 44-75 (333)
205 PF01210 NAD_Gly3P_dh_N: NAD-d 27.1 61 0.0013 24.5 2.6 21 31-51 12-32 (157)
206 PRK05920 aromatic acid decarbo 26.9 77 0.0017 25.5 3.2 42 14-56 4-45 (204)
207 PRK13604 luxD acyl transferase 26.8 1.7E+02 0.0037 25.2 5.5 33 15-47 38-70 (307)
208 cd01983 Fer4_NifH The Fer4_Nif 26.8 1.7E+02 0.0037 18.9 4.7 33 16-48 2-34 (99)
209 PRK13011 formyltetrahydrofolat 26.8 1.3E+02 0.0027 25.6 4.7 42 100-143 101-144 (286)
210 TIGR02700 flavo_MJ0208 archaeo 26.8 90 0.0019 25.5 3.7 38 19-56 4-44 (234)
211 PF02558 ApbA: Ketopantoate re 26.8 69 0.0015 23.7 2.8 20 32-51 12-31 (151)
212 PF02702 KdpD: Osmosensitive K 26.4 1.2E+02 0.0026 24.5 4.2 39 11-49 3-41 (211)
213 cd01452 VWA_26S_proteasome_sub 26.4 2.1E+02 0.0046 22.6 5.6 35 16-50 111-145 (187)
214 PRK12311 rpsB 30S ribosomal pr 26.0 1.1E+02 0.0023 26.6 4.1 32 115-146 152-185 (326)
215 PF13460 NAD_binding_10: NADH( 26.0 76 0.0016 24.1 3.0 22 31-52 12-33 (183)
216 COG1519 KdtA 3-deoxy-D-manno-o 25.9 5E+02 0.011 23.5 8.3 99 16-144 51-154 (419)
217 TIGR01425 SRP54_euk signal rec 25.8 1.4E+02 0.0031 27.0 5.0 39 15-53 102-140 (429)
218 COG2861 Uncharacterized protei 25.6 3.3E+02 0.0071 22.7 6.6 39 99-141 137-178 (250)
219 PF07881 Fucose_iso_N1: L-fuco 25.3 2.9E+02 0.0063 21.5 5.9 65 65-136 4-73 (171)
220 TIGR02193 heptsyl_trn_I lipopo 25.2 1E+02 0.0022 26.1 3.9 43 15-57 1-45 (319)
221 COG1255 Uncharacterized protei 25.2 79 0.0017 23.1 2.7 21 29-49 24-44 (129)
222 KOG2585 Uncharacterized conser 25.2 1.4E+02 0.003 27.1 4.7 35 13-50 266-302 (453)
223 PRK13982 bifunctional SbtC-lik 25.1 70 0.0015 29.3 3.0 40 12-51 255-306 (475)
224 KOG0859 Synaptobrevin/VAMP-lik 25.0 34 0.00074 27.3 0.8 19 1-19 142-160 (217)
225 PF01695 IstB_IS21: IstB-like 24.9 1.2E+02 0.0025 23.7 3.9 46 12-57 46-91 (178)
226 PRK12404 stage V sporulation p 24.9 1.8E+02 0.0038 25.4 5.1 47 100-146 60-109 (334)
227 PF07015 VirC1: VirC1 protein; 24.8 2.1E+02 0.0045 23.6 5.4 39 17-55 5-44 (231)
228 PLN02316 synthase/transferase 24.7 74 0.0016 32.2 3.3 41 12-52 586-632 (1036)
229 COG0300 DltE Short-chain dehyd 24.7 80 0.0017 26.6 3.0 21 30-50 19-39 (265)
230 PF01316 Arg_repressor: Argini 24.5 41 0.00089 22.1 1.0 26 28-53 20-45 (70)
231 CHL00076 chlB photochlorophyll 24.4 1.2E+02 0.0026 28.1 4.4 27 114-143 373-399 (513)
232 PRK05973 replicative DNA helic 24.4 1.4E+02 0.0029 24.7 4.3 42 15-56 66-107 (237)
233 PF02374 ArsA_ATPase: Anion-tr 24.3 1.3E+02 0.0029 25.7 4.4 40 15-54 2-42 (305)
234 PLN02828 formyltetrahydrofolat 24.2 1.7E+02 0.0037 24.7 4.9 45 100-144 82-131 (268)
235 TIGR02699 archaeo_AfpA archaeo 24.0 1.2E+02 0.0026 23.8 3.7 33 23-55 8-42 (174)
236 PRK08560 tyrosyl-tRNA syntheta 23.9 1.6E+02 0.0035 25.4 4.9 48 3-51 20-71 (329)
237 KOG1615 Phosphoserine phosphat 23.9 90 0.002 25.2 3.0 40 99-139 90-129 (227)
238 PRK05986 cob(I)alamin adenolsy 23.8 2.3E+02 0.0049 22.6 5.3 36 12-47 21-56 (191)
239 TIGR02114 coaB_strep phosphopa 23.7 82 0.0018 25.6 2.9 18 31-48 29-46 (227)
240 PF00175 NAD_binding_1: Oxidor 23.6 1.5E+02 0.0032 20.2 4.0 29 27-55 8-38 (109)
241 PRK12829 short chain dehydroge 23.4 2.2E+02 0.0049 22.8 5.6 34 12-49 10-43 (264)
242 PRK14098 glycogen synthase; Pr 23.4 81 0.0018 28.9 3.1 42 10-51 2-49 (489)
243 PF08384 NPP: Pro-opiomelanoco 23.4 26 0.00056 20.9 -0.1 10 21-30 35-44 (45)
244 TIGR01675 plant-AP plant acid 23.3 1E+02 0.0022 25.4 3.3 26 27-52 122-147 (229)
245 PRK06249 2-dehydropantoate 2-r 23.3 1.2E+02 0.0026 25.7 4.0 36 11-51 3-38 (313)
246 cd00550 ArsA_ATPase Oxyanion-t 23.1 1.4E+02 0.003 24.6 4.2 37 17-53 4-40 (254)
247 PF04413 Glycos_transf_N: 3-De 23.0 2.2E+02 0.0047 22.3 5.1 99 15-144 22-126 (186)
248 PRK14974 cell division protein 23.0 2E+02 0.0043 25.1 5.3 39 14-52 141-179 (336)
249 KOG1014 17 beta-hydroxysteroid 22.9 84 0.0018 27.1 2.8 19 31-49 63-81 (312)
250 TIGR00745 apbA_panE 2-dehydrop 22.9 69 0.0015 26.6 2.4 25 32-56 5-29 (293)
251 cd00561 CobA_CobO_BtuR ATP:cor 22.8 1.9E+02 0.0042 22.2 4.6 32 15-46 4-35 (159)
252 PRK06719 precorrin-2 dehydroge 22.8 96 0.0021 23.6 3.0 33 13-50 13-45 (157)
253 TIGR01278 DPOR_BchB light-inde 22.6 1.4E+02 0.0031 27.5 4.5 26 114-142 363-388 (511)
254 COG0569 TrkA K+ transport syst 22.6 79 0.0017 25.7 2.6 21 31-51 13-33 (225)
255 PRK08939 primosomal protein Dn 22.4 1.5E+02 0.0032 25.5 4.3 44 13-56 156-199 (306)
256 PRK10867 signal recognition pa 22.4 1.5E+02 0.0033 26.8 4.5 41 14-54 100-142 (433)
257 TIGR03018 pepcterm_TyrKin exop 22.3 2.4E+02 0.0052 22.2 5.3 40 13-52 34-76 (207)
258 TIGR00236 wecB UDP-N-acetylglu 22.2 1.3E+02 0.0028 25.9 4.0 106 20-142 6-116 (365)
259 PLN00016 RNA-binding protein; 22.2 1.3E+02 0.0029 26.1 4.2 38 14-51 53-90 (378)
260 cd00395 Tyr_Trp_RS_core cataly 22.1 81 0.0018 26.5 2.6 25 25-50 16-40 (273)
261 cd03809 GT1_mtfB_like This fam 22.1 83 0.0018 26.2 2.8 29 25-53 16-44 (365)
262 cd00805 TyrRS_core catalytic c 22.1 1E+02 0.0022 25.8 3.2 25 25-50 17-41 (269)
263 TIGR03088 stp2 sugar transfera 22.0 1.4E+02 0.0031 25.5 4.3 37 14-50 2-40 (374)
264 PRK10422 lipopolysaccharide co 21.9 1.3E+02 0.0029 25.9 4.1 47 11-57 3-51 (352)
265 PRK05647 purN phosphoribosylgl 21.9 2.2E+02 0.0048 22.7 5.0 44 101-144 14-59 (200)
266 PRK06029 3-octaprenyl-4-hydrox 21.8 1.1E+02 0.0024 24.2 3.2 42 15-57 3-45 (185)
267 PF01738 DLH: Dienelactone hyd 21.7 2.2E+02 0.0048 22.3 5.1 32 14-46 15-46 (218)
268 TIGR00176 mobB molybdopterin-g 21.6 2E+02 0.0042 21.8 4.5 35 16-50 2-36 (155)
269 cd00860 ThrRS_anticodon ThrRS 21.6 2.3E+02 0.005 18.5 4.5 33 15-48 3-35 (91)
270 PRK14012 cysteine desulfurase; 21.6 1.8E+02 0.0038 25.6 4.8 42 2-45 135-178 (404)
271 PF10673 DUF2487: Protein of u 21.5 1.8E+02 0.0039 22.0 4.1 42 13-54 49-98 (142)
272 PF13604 AAA_30: AAA domain; P 21.4 2.8E+02 0.006 21.8 5.5 42 11-52 16-57 (196)
273 PLN02605 monogalactosyldiacylg 21.2 2.5E+02 0.0054 24.5 5.7 33 17-49 3-38 (382)
274 PF01297 TroA: Periplasmic sol 21.2 1.7E+02 0.0037 23.9 4.4 32 114-145 198-231 (256)
275 PLN03050 pyridoxine (pyridoxam 21.2 1E+02 0.0022 25.6 3.0 34 14-49 61-95 (246)
276 PRK02910 light-independent pro 21.2 1.6E+02 0.0036 27.2 4.7 26 114-142 361-386 (519)
277 cd01124 KaiC KaiC is a circadi 21.0 1.9E+02 0.0041 21.9 4.5 41 16-56 2-42 (187)
278 cd01017 AdcA Metal binding pro 21.0 2.1E+02 0.0045 24.0 4.9 31 114-144 219-251 (282)
279 PF02571 CbiJ: Precorrin-6x re 21.0 1.8E+02 0.004 24.1 4.5 21 31-52 13-33 (249)
280 PRK14106 murD UDP-N-acetylmura 20.9 1.7E+02 0.0037 26.1 4.7 32 14-50 6-37 (450)
281 COG0505 CarA Carbamoylphosphat 20.9 2E+02 0.0043 25.4 4.7 39 12-56 178-216 (368)
282 COG1090 Predicted nucleoside-d 20.9 99 0.0021 26.3 2.8 23 31-53 12-34 (297)
283 cd03789 GT1_LPS_heptosyltransf 20.9 1.3E+02 0.0029 24.8 3.7 43 15-57 1-45 (279)
284 PF03446 NAD_binding_2: NAD bi 20.9 1.2E+02 0.0026 23.0 3.2 20 31-50 14-33 (163)
285 PRK02955 small acid-soluble sp 20.8 81 0.0018 20.6 1.8 19 216-234 15-33 (68)
286 PRK09435 membrane ATPase/prote 20.6 3.2E+02 0.007 23.8 6.1 43 12-54 54-97 (332)
287 PRK04148 hypothetical protein; 20.6 1.1E+02 0.0023 22.9 2.7 33 12-50 16-48 (134)
288 COG0543 UbiB 2-polyprenylpheno 20.6 1.3E+02 0.0028 24.9 3.5 38 16-55 110-149 (252)
289 PRK11889 flhF flagellar biosyn 20.5 2.3E+02 0.0049 25.7 5.1 40 14-53 242-281 (436)
290 PF00289 CPSase_L_chain: Carba 20.4 86 0.0019 22.4 2.1 30 19-50 77-106 (110)
291 cd01147 HemV-2 Metal binding p 20.0 1.6E+02 0.0035 23.8 4.0 31 115-145 74-107 (262)
292 TIGR00959 ffh signal recogniti 20.0 1.9E+02 0.0042 26.1 4.7 40 15-54 101-141 (428)
293 PF01497 Peripla_BP_2: Peripla 20.0 1.2E+02 0.0025 24.1 3.1 32 115-146 60-93 (238)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=8.8e-42 Score=305.47 Aligned_cols=220 Identities=34% Similarity=0.638 Sum_probs=169.4
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCC---C---C--CCCCceEEeccCCCCCCCCC
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDS---S---S--PSTSISLEAISDGYDEGGSA 82 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~---~---~--~~~~i~~~~l~~~~~~~~~~ 82 (234)
+.++||+++|||+|||+|||++|||+|+++|+.|||++|+.+..++.+.. . . ....++|..+|+|+ |++.+
T Consensus 5 ~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdgl-p~~~~ 83 (480)
T PLN02555 5 SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGW-AEDDP 83 (480)
T ss_pred CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCC-CCCcc
Confidence 45789999999999999999999999999999999999998776654210 0 0 01237787788888 44433
Q ss_pred CccCHHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCCCC
Q 026707 83 QTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLK 162 (234)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~ 162 (234)
...+...++..+.+.+.+.++++++++..++.+++|||+|+|++|+.++|+++|||+++||+++++++++++++..+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~ 163 (480)
T PLN02555 84 RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVP 163 (480)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCC
Confidence 33344455565655567888998887643334569999999999999999999999999999999999999998665432
Q ss_pred CCC---CCccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 163 LPL---LDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 163 ~~~---~~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
.+. .+.++.+||+|+++.+|||+++...+..+.+++.+.+ ..+...+++|||+|||+|||+++++++++
T Consensus 164 ~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 235 (480)
T PLN02555 164 FPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILG-QYKNLDKPFCILIDTFQELEKEIIDYMSK 235 (480)
T ss_pred cccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHH-HHHhcccCCEEEEEchHHHhHHHHHHHhh
Confidence 221 1234679999999999999877533233444555666 67788899999999999999999999864
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-41 Score=301.81 Aligned_cols=213 Identities=43% Similarity=0.747 Sum_probs=166.7
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHH
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAY 90 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 90 (234)
.+++||+++|||+|||++||++|||+|+++|++|||++|+.+.+++.. ...++|+++.+|+|+++.+.+..+++..+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~---~~~~~i~~~~ipdglp~~~~~~~~~~~~~ 79 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHL---DPSSPISIATISDGYDQGGFSSAGSVPEY 79 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhccc---CCCCCEEEEEcCCCCCCcccccccCHHHH
Confidence 346799999999999999999999999999999999999988766532 12246999999999843233333445566
Q ss_pred HHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCCCCCCCCCccc
Q 026707 91 LERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPLLDSQL 170 (234)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 170 (234)
+..+...+.+.++++++++..+.+|++|||+|+|++|+.++|+++|||++.||++++++++++++..... ++..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~~~~~ 154 (449)
T PLN02173 80 LQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----GSLTL 154 (449)
T ss_pred HHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----CCccC
Confidence 6666656778899999876432345699999999999999999999999999999999887776542110 12235
Q ss_pred cCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 171 LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 171 ~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
.+||+|+++.+|||.++.+.+..+..++.+.+ ..+...+++|||+|||+|||+++++++++
T Consensus 155 ~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 215 (449)
T PLN02173 155 PIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQ-QFTNFDKADFVLVNSFHDLDLHENELLSK 215 (449)
T ss_pred CCCCCCCCChhhCChhhcCCCCchHHHHHHHH-HHhhhccCCEEEEeCHHHhhHHHHHHHHh
Confidence 68999999999999877643333334555556 67788899999999999999999999864
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.2e-40 Score=292.35 Aligned_cols=212 Identities=30% Similarity=0.522 Sum_probs=161.9
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHh-CCCEEEEEeCccc-ccccccCCCCCCCCceEEeccCCCCCCCCCC-ccCHH
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFI-SKSLHRDSSSPSTSISLEAISDGYDEGGSAQ-TEGVE 88 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~ 88 (234)
+++||+++|||+|||+|||++|||+|++ +|+.|||++|+.+ .+++.+. ....++|+++.+++|+ |++.+. .++..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-~~~~~~i~~~~i~dgl-p~g~~~~~~~~~ 79 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-HNNVENLSFLTFSDGF-DDGVISNTDDVQ 79 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-CCCCCCEEEEEcCCCC-CCccccccccHH
Confidence 4579999999999999999999999996 7999999999965 3322211 0112369999999988 444322 33444
Q ss_pred HHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCCCCCCCCCc
Q 026707 89 AYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPLLDS 168 (234)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (234)
.++..+...+.+.++++++++...+.+++|||+|++++|+.++|+++|||++.||+++|+++++++++..+. +.
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~ 153 (455)
T PLN02152 80 NRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NS 153 (455)
T ss_pred HHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CC
Confidence 455555556788999999886433356799999999999999999999999999999999999998876432 12
Q ss_pred cccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhccc--CCCEEEEcChhHhhHHHHHhhhc
Q 026707 169 QLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNID--KADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 169 ~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
.+.+||+|+++.+|||+++......+.+.+.+.+ ..+... +++|||+|||+|||+++++++++
T Consensus 154 ~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 154 VFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQE-LMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred eeecCCCCCCchHHCchhhcCCCCchhHHHHHHH-HHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 4579999999999999877543323334455555 555443 36799999999999999999864
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-39 Score=289.70 Aligned_cols=218 Identities=21% Similarity=0.244 Sum_probs=158.3
Q ss_pred hcCCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc----CCCCCCCCCCc
Q 026707 9 ASCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS----DGYDEGGSAQT 84 (234)
Q Consensus 9 ~~~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~~ 84 (234)
.+..++||+++|||+|||++||++|||+|+++|++|||++|+.+.+++.+.. ...++|+++.+| +++ |+|.+..
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~-~~~~~i~~~~lp~P~~~~l-PdG~~~~ 82 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL-SKHPSIETLVLPFPSHPSI-PSGVENV 82 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc-ccCCCeeEEeCCCCCcCCC-CCCCcCh
Confidence 3456899999999999999999999999999999999999999987765421 122468887764 245 4455433
Q ss_pred cCHH-HHHHHHH---HhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCC
Q 026707 85 EGVE-AYLERFW---QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGL 160 (234)
Q Consensus 85 ~~~~-~~~~~~~---~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 160 (234)
+++. .....+. ..+.+.+++++++. +.+++|||+|+|++|+.++|+++|||+++||+++|+++++++++..+.
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 3321 1111121 12345566666543 246799999999999999999999999999999999999999986543
Q ss_pred CCC--C-CCCccc---cCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 161 LKL--P-LLDSQL---LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 161 ~~~--~-~~~~~~---~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
... . +.++.+ .+||+|.++.+|||.+++.....+...+++.+ ..+..++++||++|||+|||+++++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKD-SFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHH-HHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 210 1 111222 48999999999999877533222334445555 55556788999999999999999999975
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-38 Score=284.52 Aligned_cols=216 Identities=22% Similarity=0.393 Sum_probs=164.6
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHH
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAY 90 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 90 (234)
+.++|||++|||+|||+|||++|||+|+++|++|||+||+.+.+++.+... ..++|+++.+|+++ +++.. .++..+
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-~~~~i~~v~lp~g~-~~~~~--~~~~~l 79 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-PKLGITFMSISDGQ-DDDPP--RDFFSI 79 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-CCCCEEEEECCCCC-CCCcc--ccHHHH
Confidence 566899999999999999999999999999999999999998766643211 12369999999877 33321 233344
Q ss_pred HHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc----CCCCCC--
Q 026707 91 LERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK----GLLKLP-- 164 (234)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~~~~~-- 164 (234)
...+...+.+.++++++++... .+++|||+|+|++|+.++|+++|||+++||+++++++++++++.. +.++..
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 4455445678888888876432 357999999999999999999999999999999999998887632 222211
Q ss_pred -CCCccc-cCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 165 -LLDSQL-LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 165 -~~~~~~-~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
...+++ .+||+|+++.+|+|.++......+..++.+.+ ..+...+++||++|||+|||+++++++++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 227 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTR-TLERTKSLRWILMNSFKDEEYDDVKNHQA 227 (448)
T ss_pred cccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHH-HHhccccCCEEEEcChhhhCHHHHHHHHh
Confidence 111233 68999999999999876543222334566666 77788889999999999999999998764
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.9e-38 Score=282.69 Aligned_cols=213 Identities=24% Similarity=0.312 Sum_probs=158.5
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHH
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAY 90 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 90 (234)
+++.||++||||+|||++||++|||+|++||++|||++|+.+..+.. ....+|++..+|+++++.+.+.. ....+
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~----~~~~~i~~~~ip~glp~~~~~~~-~~~~~ 79 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS----DDFTDFQFVTIPESLPESDFKNL-GPIEF 79 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc----cCCCCeEEEeCCCCCCccccccc-CHHHH
Confidence 36789999999999999999999999999999999999998763211 11246999999998843232222 23345
Q ss_pred HHHHHHhCcHHHHHHHHhhhC-CCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc----CC-CCCC
Q 026707 91 LERFWQIGPRSLCELVENMNG-SGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK----GL-LKLP 164 (234)
Q Consensus 91 ~~~~~~~~~~~l~~ll~~l~~-~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~-~~~~ 164 (234)
+..+...+...++++++++.. .+.+++|||+|+|++|+.++|+++|||++.||+++++++++++++.. +. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 555554567788888887642 23567999999999999999999999999999999999998887532 21 1211
Q ss_pred C--CCccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 165 L--LDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 165 ~--~~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
. ++..+.+||+|+++.+|+|...... ...+...+.. ....++|+|||+|||+|||+++++++++
T Consensus 160 ~~~~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~--~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 225 (451)
T PLN02410 160 EPKGQQNELVPEFHPLRCKDFPVSHWAS--LESIMELYRN--TVDKRTASSVIINTASCLESSSLSRLQQ 225 (451)
T ss_pred ccccCccccCCCCCCCChHHCcchhcCC--cHHHHHHHHH--HhhcccCCEEEEeChHHhhHHHHHHHHh
Confidence 1 1223469999999999999755332 1223333333 2346789999999999999999999975
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.7e-38 Score=282.49 Aligned_cols=213 Identities=19% Similarity=0.289 Sum_probs=158.2
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCC----CEEEEEeCccccc----ccccCC---CCCCCCceEEeccCCCCCCC
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG----LKVTLVTTYFISK----SLHRDS---SSPSTSISLEAISDGYDEGG 80 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G----~~VT~vt~~~~~~----~~~~~~---~~~~~~i~~~~l~~~~~~~~ 80 (234)
.++|||++|||+|||++||++|||+|++|| +.|||++|+.+.. ++.+.. .....+|+++.+|++..+++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 578999999999999999999999999996 8999999987532 222110 01112599999997643433
Q ss_pred CCCccCHHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc--
Q 026707 81 SAQTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK-- 158 (234)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~-- 158 (234)
.+ +...++..+...+.+.++++++++ ..+++|||+|+|++|+.++|+++|||++.||+++++++++++++..
T Consensus 82 ~e---~~~~~~~~~~~~~~~~l~~~L~~l---~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 AA---GVEEFISRYIQLHAPHVRAAIAGL---SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred cc---cHHHHHHHHHHhhhHHHHHHHHhc---CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 22 233444434444567788888765 2467999999999999999999999999999999999999998753
Q ss_pred CCCC--CCCCCccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhcC
Q 026707 159 GLLK--LPLLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNIG 233 (234)
Q Consensus 159 ~~~~--~~~~~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~g 233 (234)
+..+ ..+...++.+||+|+++.+|||.++.+.. +..++.+.+ ..++..+++|||+|||+|||++++++++++
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 229 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKK--SPNYAWFVY-HGRRFMEAAGIIVNTAAELEPGVLAAIADG 229 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCC--cHHHHHHHH-HHHhhhhcCEEEEechHHhhHHHHHHHHhc
Confidence 2211 11111345699999999999998765432 122344555 567788899999999999999999999764
No 8
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-37 Score=277.07 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=156.3
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCC----CEEEEEeCccccccccc---CCCCCCCCceEEeccCCCCC-CCCCC
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG----LKVTLVTTYFISKSLHR---DSSSPSTSISLEAISDGYDE-GGSAQ 83 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G----~~VT~vt~~~~~~~~~~---~~~~~~~~i~~~~l~~~~~~-~~~~~ 83 (234)
.+.|||++|||+|||++||++|||+|+++| ++||+++++.+...+.+ ......++|+++.+|++.++ ++...
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 467999999999999999999999999998 44555666554332211 00011246999999977532 22111
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcC--CC
Q 026707 84 TEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKG--LL 161 (234)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~--~~ 161 (234)
..+...++..+...+...++++++++.. +.+++|||+|+|++|+.++|+++|||+++||+++|+++++++++... ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 1222223322333457788888887632 24679999999999999999999999999999999999999987532 11
Q ss_pred CCC--CCCccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 162 KLP--LLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 162 ~~~--~~~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
+.. .+..++.+||+|+++.+|||+++.+.+ +..++++.+ ..+...+++|||+|||+|||+++++++++
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIM-FGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHH-HHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 111 111246799999999999998776433 334556666 67778889999999999999999999975
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7.9e-38 Score=280.49 Aligned_cols=213 Identities=23% Similarity=0.373 Sum_probs=151.5
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCC--C-CCCCceEEecc-----CCCCCCCCCC
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSS--S-PSTSISLEAIS-----DGYDEGGSAQ 83 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~--~-~~~~i~~~~l~-----~~~~~~~~~~ 83 (234)
++.||+++|||+|||+|||++|||+|++||+.|||++|+.+..++.+... . ....|+|+.+| +++ |++.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl-p~~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGL-PIGCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCC-CCCccc
Confidence 45799999999999999999999999999999999999998766543110 0 11249999997 677 444443
Q ss_pred ccCHH--HHHHHHHH---hCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc
Q 026707 84 TEGVE--AYLERFWQ---IGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK 158 (234)
Q Consensus 84 ~~~~~--~~~~~~~~---~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~ 158 (234)
.+++. .+...+.. .+.+.+++++++. +.+++|||+|+|++|+.++|+++|||+++||+++++++++++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 32211 22222222 2345666666542 2468999999999999999999999999999999999988776532
Q ss_pred --CCCCCCCCCccccCCCCCC---CCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 159 --GLLKLPLLDSQLLLPGMPP---LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 159 --~~~~~~~~~~~~~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
+..+.+.++.++.+||+|+ ++.+|||.++.... ....+... ..+..++++|||+|||+|||+++++++++
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~---~~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP---DLDDVRNK-MREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcCcc---cHHHHHHH-HHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 2211222234567999984 89999997654321 12223322 32334568899999999999999999975
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-37 Score=278.43 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=155.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHH-hCCCEEEEEeCcccccccccCCCCCCCCceEEeccC----CCCCCCCCCccC
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD----GYDEGGSAQTEG 86 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La-~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~~~~~ 86 (234)
.++||+++|||+|||++||++|||+|+ ++|++|||++|+.+..++.+.. ...++|+++.+|+ ++++.+ .+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~-~~~~~i~~~~lp~p~~~glp~~~----~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF-LNSTGVDIVGLPSPDISGLVDPS----AH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc-ccCCCceEEECCCccccCCCCCC----cc
Confidence 568999999999999999999999998 7999999999998876553211 1113689998874 442122 11
Q ss_pred HHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc--CCCCCC
Q 026707 87 VEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK--GLLKLP 164 (234)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~--~~~~~~ 164 (234)
....+......+.+.++++++++. .+++|||+|+|++|+.++|+++|||+++||+++|+++++++++.. +.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 222222222234677888887642 467999999999999999999999999999999999988877642 211110
Q ss_pred --CCCccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 165 --LLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 165 --~~~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
..+.++.+||+|+++.+|+|..+.... ...++.+.+ ..+...+|+|||+|||+|||+++++++++
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFVR-HGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCCC--cHHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 111245799999999999997554432 234555666 67778899999999999999999999975
No 11
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-37 Score=278.02 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=150.2
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc----CCCCCCCCCCccC
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS----DGYDEGGSAQTEG 86 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~~~~ 86 (234)
..++|||++|||+|||++||++|||+|++||++|||++|+.+..++.+......+.|+++.+| +|+ |++.+..++
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dgl-p~~~~~~~~ 82 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGL-PSSAESSTD 82 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCC-CCCcccccc
Confidence 456799999999999999999999999999999999999998866653111112369999987 677 434333333
Q ss_pred HH----HHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhh----c
Q 026707 87 VE----AYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVN----K 158 (234)
Q Consensus 87 ~~----~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~----~ 158 (234)
.. .++....+.+.+.+++++++ .+++|||+|+|++|+.++|+++|||+++||+++++++++++++. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET-----SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh-----CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 32 12222222344555555543 25799999999999999999999999999999999999887552 2
Q ss_pred CCCCCCCCCccc-cCCCCC------CCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhh
Q 026707 159 GLLKLPLLDSQL-LLPGMP------PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVN 231 (234)
Q Consensus 159 ~~~~~~~~~~~~-~iPg~p------~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~ 231 (234)
|..+... +.+ .+||++ .++.+|||.++............+.+ ......+++|||+|||+|||++++++++
T Consensus 158 ~~~~~~~--~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 158 GDLRSTA--EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVR-FGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred ccCCCcc--ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHH-HHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 3322221 122 355542 25677999876432212222333445 5566788999999999999999999996
Q ss_pred c
Q 026707 232 I 232 (234)
Q Consensus 232 ~ 232 (234)
+
T Consensus 235 ~ 235 (472)
T PLN02670 235 D 235 (472)
T ss_pred H
Confidence 4
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-36 Score=271.56 Aligned_cols=212 Identities=29% Similarity=0.487 Sum_probs=156.7
Q ss_pred cCCCceEEEEeCCCccChHHHHHHHHH--HHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCH
Q 026707 10 SCKRVHCLVLSYPAQGHINPLLQFAKR--LEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGV 87 (234)
Q Consensus 10 ~~~~~hv~~~p~p~~GH~~P~l~La~~--La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 87 (234)
+.++.||+++|||+|||+|||++||++ |++||++|||++|+.+.+++.+. ......+++..+|+++ |++.+ .+.
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~~~~~~~~~~~~~gl-p~~~~--~~~ 80 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EKPRRPVDLVFFSDGL-PKDDP--RAP 80 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cCCCCceEEEECCCCC-CCCcc--cCH
Confidence 455789999999999999999999999 56999999999999987766431 1122457888888888 44432 233
Q ss_pred HHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc--CCCCCCC
Q 026707 88 EAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK--GLLKLPL 165 (234)
Q Consensus 88 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~--~~~~~~~ 165 (234)
..++..+...+.+.+++++++ .+|||||+|.+++|+.++|+++|||+++||+++++++++++++.. +.++...
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~ 155 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLE 155 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCccc
Confidence 344544444444556655543 368999999999999999999999999999999999999887643 2222211
Q ss_pred C-CccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 166 L-DSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 166 ~-~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
+ +..+.+||+|+++.+|+|.++.+.. ...+...+.+ ..+...++++|++|||+|||+++++++++
T Consensus 156 ~~~~~~~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 156 DLNQTVELPALPLLEVRDLPSFMLPSG-GAHFNNLMAE-FADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred ccCCeeeCCCCCCCChhhCChhhhcCC-chHHHHHHHH-HHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 1 1245799999999999998765432 1223233334 44567789999999999999999999864
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2e-36 Score=269.48 Aligned_cols=213 Identities=16% Similarity=0.224 Sum_probs=154.9
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhC-CCEEEEEeCcccccccccC--CC-C-CCCCceEEeccCCCCCCCC-CCcc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHK-GLKVTLVTTYFISKSLHRD--SS-S-PSTSISLEAISDGYDEGGS-AQTE 85 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~-G~~VT~vt~~~~~~~~~~~--~~-~-~~~~i~~~~l~~~~~~~~~-~~~~ 85 (234)
.++||+++|||+|||++||++|||+|+++ |+.|||++|+.+..++... .. . ..++|+++.+|++. .++. +...
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEPDA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCCCc
Confidence 46799999999999999999999999987 9999999998766443110 00 1 11259999998543 2232 1101
Q ss_pred CHH-HHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCC-ceEecccchHHHHHHHHhhc--CCC
Q 026707 86 GVE-AYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLV-GAAFLTQSCVVDCIYYHVNK--GLL 161 (234)
Q Consensus 86 ~~~-~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~~~~~~~--~~~ 161 (234)
+.. .++... +.+.+.++++++++. .+++|||+|+|++|+.++|+++||| +++|++++++.+++++|++. +..
T Consensus 81 ~~~~~~~~~~-~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~ 156 (470)
T PLN03015 81 TIFTKMVVKM-RAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV 156 (470)
T ss_pred cHHHHHHHHH-HhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc
Confidence 222 333333 346788899888763 3679999999999999999999999 69999999998888888642 221
Q ss_pred CC--CCCCccccCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 162 KL--PLLDSQLLLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 162 ~~--~~~~~~~~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
.. .+.++++.+||+|+++.+|+|..+.+.. ...+..+.+ ..++..+++|||+|||+|||+++++++++
T Consensus 157 ~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 157 EGEYVDIKEPLKIPGCKPVGPKELMETMLDRS--DQQYKECVR-SGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred ccccCCCCCeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 11 0112346799999999999997665432 222333445 66778999999999999999999999975
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.3e-36 Score=269.67 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=151.6
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCC--CEEEEEeCccccc-ccccCC---CCCCCCceEEeccCCCC-CCCCCCc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKG--LKVTLVTTYFISK-SLHRDS---SSPSTSISLEAISDGYD-EGGSAQT 84 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G--~~VT~vt~~~~~~-~~~~~~---~~~~~~i~~~~l~~~~~-~~~~~~~ 84 (234)
+++||+++|||+|||++||++||++|+++| +.|||++|+.+.. .+.... ....++|+|+.+|++.. ++. ...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~~~ 80 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTL-GGT 80 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcc-ccc
Confidence 568999999999999999999999999998 9999999998752 221100 01124699999996531 210 112
Q ss_pred cCHHHHHHHHHHhCcHHHH----HHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCC
Q 026707 85 EGVEAYLERFWQIGPRSLC----ELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGL 160 (234)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~----~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 160 (234)
.+...++..+...+.+.++ +++++...+++|++|||+|.|++|+.++|+++|||+++||+++|+++++++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 2333333223233434444 444433212235699999999999999999999999999999999999998874321
Q ss_pred -----CCCCCCCccccCCCC-CCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 161 -----LKLPLLDSQLLLPGM-PPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 161 -----~~~~~~~~~~~iPg~-p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
.+.+..+..+.+||+ |+++.+|+|+++.+.. . +..+.+ ..+..+++++||+|||+|||+++++++++
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~--~~~~~~-~~~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--G--YDAYVK-LAILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--c--HHHHHH-HHHhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 111111234679999 6899999998775332 1 334445 66678899999999999999999999854
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.5e-36 Score=268.77 Aligned_cols=209 Identities=20% Similarity=0.243 Sum_probs=152.7
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCC--CEEEEEeCcccccccc-------cCCCCCCCCceEEeccCCCCCCCCCC
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKG--LKVTLVTTYFISKSLH-------RDSSSPSTSISLEAISDGYDEGGSAQ 83 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G--~~VT~vt~~~~~~~~~-------~~~~~~~~~i~~~~l~~~~~~~~~~~ 83 (234)
|.|||++|||+|||++||++|||+|+++| ++|||++|+.+..++. +......++|+++.+|++.+++. ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-ED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-cc
Confidence 67999999999999999999999999998 9999999998765321 10000123699999987753211 11
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHhhhC-----CCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc
Q 026707 84 TEGVEAYLERFWQIGPRSLCELVENMNG-----SGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK 158 (234)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~-----~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~ 158 (234)
. .+...+. .+.+.+++.++++.. ++++++|||+|+|++|+.++|+++|||++.|||++|+++++++++..
T Consensus 81 -~---~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 81 -P---TFQSYID-NQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred -h---HHHHHHH-HHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1 2222222 234556666655431 12346999999999999999999999999999999999999998853
Q ss_pred C--C--CCCC---CCCccccCCCCC-CCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhh
Q 026707 159 G--L--LKLP---LLDSQLLLPGMP-PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWV 230 (234)
Q Consensus 159 ~--~--~~~~---~~~~~~~iPg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l 230 (234)
. . .+.+ +.+.++.+||++ +++.+|+|..+.+. .+++.+.+ ..+...+++||++|||+|||+++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~-~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLFLA-QARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHH
Confidence 2 1 2211 111346799995 89999999776432 24556666 777888999999999999999999998
Q ss_pred hc
Q 026707 231 NI 232 (234)
Q Consensus 231 ~~ 232 (234)
++
T Consensus 231 ~~ 232 (481)
T PLN02554 231 SG 232 (481)
T ss_pred Hh
Confidence 75
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-35 Score=266.06 Aligned_cols=213 Identities=23% Similarity=0.427 Sum_probs=162.2
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhC--CCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHH
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVE 88 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~--G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 88 (234)
..++||+++|||++||++||++||++|+++ ||+|||++|+.+.+++.+.. ..++|+|+.+|+++ |++.+...+..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~--~~~gi~fv~lp~~~-p~~~~~~~~~~ 84 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP--KPDNIRFATIPNVI-PSELVRAADFP 84 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC--CCCCEEEEECCCCC-CCccccccCHH
Confidence 346899999999999999999999999999 99999999999887765421 12479999999876 43333223444
Q ss_pred HHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhc----CCCCCC
Q 026707 89 AYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNK----GLLKLP 164 (234)
Q Consensus 89 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~~~~~ 164 (234)
.++..+...+.+.++++++++. .++||||+|.+++|+.++|+++|||++.||+++++++++++++.. +..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 4444444345667788887653 468999999999999999999999999999999999998887742 222211
Q ss_pred C---CCccc-cCCCCCCCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 165 L---LDSQL-LLPGMPPLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 165 ~---~~~~~-~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
. .+..+ .+||+++++.+|+|.++.+.. ...++.+.+ ..+...++++||+|||+|||+++++++++
T Consensus 162 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 230 (459)
T PLN02448 162 LSESGEERVDYIPGLSSTRLSDLPPIFHGNS--RRVLKRILE-AFSWVPKAQYLLFTSFYELEAQAIDALKS 230 (459)
T ss_pred cccccCCccccCCCCCCCChHHCchhhcCCc--hHHHHHHHH-HHhhcccCCEEEEccHHHhhHHHHHHHHh
Confidence 1 11223 489999999999998765432 233455556 66677889999999999999999999865
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-35 Score=267.51 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=150.0
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCC---EEEEEeCccccc-----ccccCCCCCCCCceEEeccCCCCCCCCCC
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGL---KVTLVTTYFISK-----SLHRDSSSPSTSISLEAISDGYDEGGSAQ 83 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~---~VT~vt~~~~~~-----~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 83 (234)
+++||+++|||+|||++||++|||+|+++|. .||+++|..+.. .+.+. ....++|+|+.+|++..+.+.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-IASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-ccCCCCeEEEECCCCCCCccccc
Confidence 5789999999999999999999999999994 567777654332 11110 11224699999987542222111
Q ss_pred -ccCHHHHHHHHHHhCcHHHHHHHHhhhCC----CC-CccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhh
Q 026707 84 -TEGVEAYLERFWQIGPRSLCELVENMNGS----GV-PVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVN 157 (234)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~l~~ll~~l~~~----~~-~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 157 (234)
.......+..+...+.+.+++.++++..+ +. +++|||+|+|++|+.++|+++|||+++||+++++++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11121122222233456777777765321 12 5699999999999999999999999999999999999998874
Q ss_pred c--CCCC----CCCCCccccCCCCC-CCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhh
Q 026707 158 K--GLLK----LPLLDSQLLLPGMP-PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWV 230 (234)
Q Consensus 158 ~--~~~~----~~~~~~~~~iPg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l 230 (234)
. +..+ ....+.++.+||+| +++..|+|..+.+.. .++.+.+ ..++..+++|||+|||+|||+++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~-~~~~~~~a~~vlvNTf~eLE~~~~~~l 235 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVE-IAERFPEAKGILVNSFTELEPNAFDYF 235 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHH-HHHhhcccCEeeeccHHHHHHHHHHHH
Confidence 3 2221 11112346799995 799999997654432 1334455 667788999999999999999999999
Q ss_pred hc
Q 026707 231 NI 232 (234)
Q Consensus 231 ~~ 232 (234)
++
T Consensus 236 ~~ 237 (475)
T PLN02167 236 SR 237 (475)
T ss_pred Hh
Confidence 65
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.8e-35 Score=261.21 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=145.6
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCC-CCCceEEecc--CCCCCCCCCCccCH
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSP-STSISLEAIS--DGYDEGGSAQTEGV 87 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~-~~~i~~~~l~--~~~~~~~~~~~~~~ 87 (234)
..++||+++|||+|||++||++|||+|+++|++|||+||+.+..++.+..... ...++++++| +++ |++.+.+++.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~gl-p~g~e~~~~~ 81 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGL-PVGTETVSEI 81 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCC-CCcccccccC
Confidence 45689999999999999999999999999999999999999876654310011 1136677776 677 4454432222
Q ss_pred H-HHHHHHHH---hCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCCCCC
Q 026707 88 E-AYLERFWQ---IGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKL 163 (234)
Q Consensus 88 ~-~~~~~~~~---~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~ 163 (234)
. .....+.. .+.+.+++++++ .+++|||+|+ ++|+.++|+++|||++.||++++++++++++ ..+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~-----~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~-- 152 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRA-----VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL-- 152 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHh-----CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC--
Confidence 2 11222222 234556666654 2579999995 8999999999999999999999999998863 21111
Q ss_pred CCCCccccCCCCCC----CCCCCCCCCcc--CCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 164 PLLDSQLLLPGMPP----LEPQDMPSFVY--DLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 164 ~~~~~~~~iPg~p~----l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
...+||+|. ++.+|+|.+.. .....+.+..++.+ ..+..++++|||+|||+|||+++++++++
T Consensus 153 -----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 153 -----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLER-VTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred -----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHH-HHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 123589983 88899987432 11111223445555 54677889999999999999999999964
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1e-34 Score=258.18 Aligned_cols=201 Identities=20% Similarity=0.337 Sum_probs=139.7
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEec--c--CCCCCCCCCCccCH
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAI--S--DGYDEGGSAQTEGV 87 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~~~~~~~ 87 (234)
.++||+++|||++||++||++|||+|+++|++|||+||+.+..++.+.. ....++++..+ + +++ |++.+..+++
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-a~~~~i~~~~l~~p~~dgL-p~g~~~~~~l 80 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-LFPDSIVFHPLTIPPVNGL-PAGAETTSDI 80 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-CCCCceEEEEeCCCCccCC-CCCcccccch
Confidence 5689999999999999999999999999999999999998877664421 11135677665 3 466 4444333333
Q ss_pred H-HHHHHHHH---hCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCCCCC
Q 026707 88 E-AYLERFWQ---IGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKL 163 (234)
Q Consensus 88 ~-~~~~~~~~---~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~ 163 (234)
. .+...+.. ...+.+++++++ .++||||+| +++|+.++|+++|||++.||+++|++++ ++++..+..
T Consensus 81 ~~~l~~~~~~~~~~~~~~l~~~L~~-----~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~-- 151 (442)
T PLN02208 81 PISMDNLLSEALDLTRDQVEAAVRA-----LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL-- 151 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc--
Confidence 2 11112221 223444444433 367999999 5899999999999999999999998765 555432211
Q ss_pred CCCCccccCCCCCC----CCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 164 PLLDSQLLLPGMPP----LEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 164 ~~~~~~~~iPg~p~----l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
...+||+|. ++.+|+|.+ .. .+..++.+.+.+.+...+++||++|||+|||++++++++.
T Consensus 152 -----~~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~ 215 (442)
T PLN02208 152 -----GVPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR 215 (442)
T ss_pred -----CCCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh
Confidence 123689885 678899964 11 1222333333034567789999999999999999999864
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-34 Score=257.69 Aligned_cols=202 Identities=21% Similarity=0.313 Sum_probs=139.7
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEec--c--CCCCCCCCCCccC
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAI--S--DGYDEGGSAQTEG 86 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~~~~~~ 86 (234)
.+++||+++|||+|||+|||++|||+|+++|++|||+||+.+..++.+.. ...++|+++.+ | +++ |++.+...+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-~~~~~i~~~~i~lP~~dGL-P~g~e~~~~ 79 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-LFPDSIVFEPLTLPPVDGL-PFGAETASD 79 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-cCCCceEEEEecCCCcCCC-CCccccccc
Confidence 45789999999999999999999999999999999999998876664321 11135888655 3 566 444333323
Q ss_pred HHH-HHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHHHHHhhcCCCCCCC
Q 026707 87 VEA-YLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCIYYHVNKGLLKLPL 165 (234)
Q Consensus 87 ~~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 165 (234)
... ....+.. ..+.+++.++++..+ .++||||+|+ ++|+.++|+++|||++.||++++++++++++....
T Consensus 80 l~~~~~~~~~~-a~~~l~~~l~~~L~~-~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~------ 150 (446)
T PLN00414 80 LPNSTKKPIFD-AMDLLRDQIEAKVRA-LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE------ 150 (446)
T ss_pred chhhHHHHHHH-HHHHHHHHHHHHHhc-CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh------
Confidence 321 1112222 123444445444322 3679999995 89999999999999999999999999988763210
Q ss_pred CCccccCCCCCC----CCCCCCC--CCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHHHhhhc
Q 026707 166 LDSQLLLPGMPP----LEPQDMP--SFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELNGWVNI 232 (234)
Q Consensus 166 ~~~~~~iPg~p~----l~~~dlp--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~~~l~~ 232 (234)
.+ ..+||+|. ++..|++ .++.. . ...+.+ ..+...+++|||+|||+|||+++++++++
T Consensus 151 ~~--~~~pg~p~~~~~~~~~~~~~~~~~~~---~---~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 214 (446)
T PLN00414 151 LG--FPPPDYPLSKVALRGHDANVCSLFAN---S---HELFGL-ITKGLKNCDVVSIRTCVELEGNLCDFIER 214 (446)
T ss_pred cC--CCCCCCCCCcCcCchhhcccchhhcc---c---HHHHHH-HHHhhccCCEEEEechHHHHHHHHHHHHH
Confidence 01 23577774 4444433 33321 1 123444 55677889999999999999999999865
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.8e-33 Score=250.78 Aligned_cols=214 Identities=22% Similarity=0.399 Sum_probs=148.1
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCC---CCCC----CceEEecc---CCCCCCC
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSS---SPST----SISLEAIS---DGYDEGG 80 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~---~~~~----~i~~~~l~---~~~~~~~ 80 (234)
+++.||+++|||++||+|||++||++|++||++|||++|+.+..++.+... +..+ .+....+| +++ |++
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~gl-P~g 81 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGL-PEG 81 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCC-CCC
Confidence 567899999999999999999999999999999999999988765543110 0011 34445555 456 444
Q ss_pred CCCcc--------CHHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHHHHH
Q 026707 81 SAQTE--------GVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVVDCI 152 (234)
Q Consensus 81 ~~~~~--------~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 152 (234)
.+... ....+...+.. ..+.+.+.++++.++ .++||||+|.+++|+.++|+++|||+++||+++++++++
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~-~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLET-TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred cccccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhc-CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 33221 12233333332 234555566655433 368999999999999999999999999999999999888
Q ss_pred HHHhhc-CCC-CCCCCCccccCCCCC---CCCCCCCCCCccCCCCchHHHHHHHHHHhhcccCCCEEEEcChhHhhHHHH
Q 026707 153 YYHVNK-GLL-KLPLLDSQLLLPGMP---PLEPQDMPSFVYDLGSYPAVSDMVVKYQFDNIDKADWVLCNTFYELEKELN 227 (234)
Q Consensus 153 ~~~~~~-~~~-~~~~~~~~~~iPg~p---~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNTf~eLE~~~~ 227 (234)
++++.. ... .....+..+.+||+| .++..++|.. + ....+.+++.. ..+...++++|++|||+|||++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 160 SYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--D--EESPMGKFMKE-VRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--C--CchhHHHHHHH-HHhhcccCCEEEEECHHHHHHHHH
Confidence 776532 111 111112245689997 3566777742 1 12334455555 556788899999999999999999
Q ss_pred Hhhhc
Q 026707 228 GWVNI 232 (234)
Q Consensus 228 ~~l~~ 232 (234)
+++++
T Consensus 235 ~~~~~ 239 (482)
T PLN03007 235 DFYKS 239 (482)
T ss_pred HHHHh
Confidence 99864
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.62 E-value=1.2e-15 Score=134.65 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=88.6
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCC--CCC--------
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGG--SAQ-------- 83 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~~~-------- 83 (234)
.||+++++|++||++|++.||++|+++||+|||++++.....+.+ .+++|..+++..+... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA------AGLEFVPVGGDPDELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH------cCCceeeCCCCHHHHHhhhhhcccccccc
Confidence 389999999999999999999999999999999999977665543 4678887764321000 000
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccch
Q 026707 84 TEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSC 147 (234)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 147 (234)
..........+.......++++++.+. ..++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAAR--DWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 001111222233333344445554432 25789999999889999999999999999988764
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.57 E-value=1.2e-14 Score=128.21 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=83.2
Q ss_pred EeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCC-CCCC-c-cCHHHHHHHHH
Q 026707 19 LSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEG-GSAQ-T-EGVEAYLERFW 95 (234)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~-~-~~~~~~~~~~~ 95 (234)
+.+|++||++|++.||++|.++||+|||++++.+.+.+.+ .++++..+++..... ..+. . .+.......+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA------AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLL 74 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH------cCCEEEecCCcCccccccccccCcchHHHHHHHH
Confidence 3579999999999999999999999999999988877754 467888887544211 1100 0 12222333333
Q ss_pred HhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEeccc
Q 026707 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQ 145 (234)
Q Consensus 96 ~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 145 (234)
..+...+.++++.+. . .+|||||+|.++.|+..+|+++|||++.+++.
T Consensus 75 ~~~~~~~~~l~~~~~-~-~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 75 DEAEDVLPQLEEAYK-G-DRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHHHHhc-C-CCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 322333444443332 2 46899999999899999999999999998654
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.43 E-value=1.3e-14 Score=131.68 Aligned_cols=144 Identities=27% Similarity=0.353 Sum_probs=92.0
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCC-C-----CCCceEEeccCCCCCCCCCCcc-
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSS-P-----STSISLEAISDGYDEGGSAQTE- 85 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~-~-----~~~i~~~~l~~~~~~~~~~~~~- 85 (234)
+.|++++|+|++||++|+++||++|+++||+||++++..+.......... . ...+.+...++++ +.+.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGL-PEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhh-ccchHHHHH
Confidence 68999999999999999999999999999999999998776544320000 0 0011111111222 21111100
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHhhhC-CCCCccEEEeCCCCccHHHHHHHcC-CCceEecccchHHHHHHHHhh
Q 026707 86 GVEAYLERFWQIGPRSLCELVENMNG-SGVPVDCIVYDSFLPWALDVAKKFG-LVGAAFLTQSCVVDCIYYHVN 157 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~ll~~l~~-~~~~~d~vI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~~~ 157 (234)
........+...+...+++.+..+.. ....+||+|+|.|..|...+|.+.+ |+..++++.++...++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 11111233333445566665444321 2234999999999999999998885 999999999988777665543
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.22 E-value=1.7e-12 Score=98.05 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=77.4
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCC----ccCHHHHH
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQ----TEGVEAYL 91 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~----~~~~~~~~ 91 (234)
|++...++.||++|++.|+++|.++||+|++.+.+...+.+.. .+++|+.++... .... ...+....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~------~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA------AGLEFVPIPGDS---RLPRSLEPLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH------TT-EEEESSSCG---GGGHHHHHHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc------cCceEEEecCCc---CcCcccchhhhhhhHH
Confidence 6889999999999999999999999999999999988877754 578999886430 1110 00011111
Q ss_pred H---HHHHhCcHHHHHHHHhhh---CCCCCccEEEeCCCCccHHHHHHHcCCCceEecccch
Q 026707 92 E---RFWQIGPRSLCELVENMN---GSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSC 147 (234)
Q Consensus 92 ~---~~~~~~~~~l~~ll~~l~---~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 147 (234)
. .+.+ ....+++...+.. ......++++.+.....+..+|+++|||.+.....+.
T Consensus 72 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 72 RLIRGLEE-AMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHhhhhhH-HHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 1 1111 1112222221111 0112467888888778889999999999999766553
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.78 E-value=5.5e-08 Score=88.70 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=74.8
Q ss_pred CCceEEEE-eCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCC--C---CCCCC--
Q 026707 12 KRVHCLVL-SYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYD--E---GGSAQ-- 83 (234)
Q Consensus 12 ~~~hv~~~-p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~--~---~~~~~-- 83 (234)
...+|+++ |.++.||++-+..++++|++|||+||++++.... .... ....+++...++.... . .....
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYAS---HLCGNITEIDASLSVEYFKKLVKSSAVFR 94 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cccc---CCCCCEEEEEcCCChHHHHHHHhhhhHHH
Confidence 44568755 9999999999999999999999999999775421 1110 0123444444321000 0 00000
Q ss_pred c-c---CH----HHHHHHHHHhCc-----HHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHc-CCCceEecccch
Q 026707 84 T-E---GV----EAYLERFWQIGP-----RSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKF-GLVGAAFLTQSC 147 (234)
Q Consensus 84 ~-~---~~----~~~~~~~~~~~~-----~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~~~~a 147 (234)
. . +. ......+...|. ..+.+++++ ...++|+||+|.+..++..+|+++ |+|.|.+++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~---~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN---KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc---CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 0 0 00 001111111122 223333321 225799999999888888899999 999877766443
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.73 E-value=1.2e-09 Score=99.49 Aligned_cols=123 Identities=26% Similarity=0.320 Sum_probs=55.9
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCC-ccCHH-H---
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQ-TEGVE-A--- 89 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~-~--- 89 (234)
+|+++|+ +.||+++|..++++|++|||+||++++.... .+.. ....+++++.++.+.+...... ..+.. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP---SKPSNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T---------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc---ccccceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 6888885 7899999999999999999999999886532 2221 1234677777765542222111 11110 0
Q ss_pred -------HHHHHH------H----hCcHHH--HHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecc
Q 026707 90 -------YLERFW------Q----IGPRSL--CELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 90 -------~~~~~~------~----~~~~~l--~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 144 (234)
....+. . .|...+ +++++.+.. .++|++|+|.|..++..+|+.+|||.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 000000 0 010000 011111111 2578888888877788888888888876543
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.32 E-value=8.1e-07 Score=78.96 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=47.3
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
+.+|+++..|..||++|.+.|+++|.++||+|+|++++...+.+.+ .++.|..++
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~------ag~~f~~~~ 55 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA------AGLAFVAYP 55 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH------hCcceeecc
Confidence 3589999999999999999999999999999999999999888865 245666554
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.29 E-value=7.2e-06 Score=70.59 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=65.8
Q ss_pred EEE-EeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCce-EEeccC-CCC-CCCCCCccCHHHHH
Q 026707 16 CLV-LSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSIS-LEAISD-GYD-EGGSAQTEGVEAYL 91 (234)
Q Consensus 16 v~~-~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~-~~~l~~-~~~-~~~~~~~~~~~~~~ 91 (234)
|++ +.-.|.||+.|.+.++++|.+ ||+|+++++......+.. .++. +...|. .+. +.+. . +.....
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~--~-~~~~~l 71 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK------YGFKVFETFPGIKLKGEDGK--V-NIVKTL 71 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh------hcCcceeccCCceEeecCCc--C-cHHHHH
Confidence 443 555677999999999999999 999999987763322221 1222 222221 000 1110 1 111111
Q ss_pred HHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccc
Q 026707 92 ERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 92 ~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (234)
..........+.+..+-+.+ .+||+||+| +-..+..+|+.+|||++.+.-+.
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 72 RNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 10001001233333332222 468999999 55667889999999999765443
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.26 E-value=1.2e-05 Score=68.71 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=68.8
Q ss_pred eEEEEeC-CCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCC-CccCHHHHHH
Q 026707 15 HCLVLSY-PAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSA-QTEGVEAYLE 92 (234)
Q Consensus 15 hv~~~p~-p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~ 92 (234)
||++... -|.||+.-.+.|+++| +||+|+|++.....+.+.. .+....+++-. ..... ..+.......
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 71 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-------RFPVREIPGLG-PIQENGRLDRWKTVRN 71 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-------ccCEEEccCce-EeccCCccchHHHHHH
Confidence 5665444 3789999999999999 6999999998755443421 23444443211 11100 1111111111
Q ss_pred HH--HHhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccch
Q 026707 93 RF--WQIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSC 147 (234)
Q Consensus 93 ~~--~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 147 (234)
.. .......++++++.+.. .+||+||+|. .+.+...|+..|||++.+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~ 125 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYW 125 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHH
Confidence 10 00112233444433322 4689999995 45567889999999998765543
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.84 E-value=0.00038 Score=60.81 Aligned_cols=121 Identities=9% Similarity=0.005 Sum_probs=71.5
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccc-cccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHH
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKS-LHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (234)
+|++..-..-||+.|.+.+|++|.++||+|+|+++..-.+. +. ...++.+..++.. +......+.. +..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~-----~~~g~~~~~~~~~----~l~~~~~~~~-~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTII-----EKENIPYYSISSG----KLRRYFDLKN-IKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccC-----cccCCcEEEEecc----CcCCCchHHH-HHH
Confidence 56666666669999999999999999999999987654322 11 1135777766521 1111111211 111
Q ss_pred HHHhCcH--HHHHHHHhhhCCCCCccEEEeCCCCcc--HHHHHHHcCCCceEecccchHHH
Q 026707 94 FWQIGPR--SLCELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLTQSCVVD 150 (234)
Q Consensus 94 ~~~~~~~--~l~~ll~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~~~ 150 (234)
....... ....++++ .+||+||...-... +...|+-+|+|.+..-.......
T Consensus 73 ~~~~~~~~~~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~ 128 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGL 128 (352)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccH
Confidence 1111111 11223333 47899999764433 46778888999988766554333
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0028 Score=55.45 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=72.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCC-EEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHH
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGL-KVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~-~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (234)
.|++..-.+-||+.|-+.|++.|.++|+ +|.++.+....+.... ...++.++.++-+- ..+..........+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~----~~~~~~~~~I~~~~-~~~~~~~~~~~~~~~~ 76 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV----KQYGIEFELIPSGG-LRRKGSLKLLKAPFKL 76 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec----cccCceEEEEeccc-ccccCcHHHHHHHHHH
Confidence 3566666677999999999999999999 5777755544433221 12367787776432 1111111112222222
Q ss_pred HHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCcc--HHHHHHHcCCCceEecccchH
Q 026707 94 FWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLTQSCV 148 (234)
Q Consensus 94 ~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~ 148 (234)
+.. ....+.++++ .+||+||.=..+.. +.-.|..+|||.+.--+-...
T Consensus 77 ~~~--~~~a~~il~~-----~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~ 126 (357)
T COG0707 77 LKG--VLQARKILKK-----LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP 126 (357)
T ss_pred HHH--HHHHHHHHHH-----cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc
Confidence 221 2234555655 36899999654443 456777789999986654443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.26 E-value=0.0045 Score=53.33 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=65.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHH
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERF 94 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (234)
+|++..--..||......|++.|.++||+|++++....... .. ....++++..++-.- ..+.............+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RL---VPKAGIPLHTIPVGG-LRRKGSLKKLKAPFKLL 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hc---ccccCCceEEEEecC-cCCCChHHHHHHHHHHH
Confidence 35666666669999999999999999999999987543211 10 011346666665211 00100001111111111
Q ss_pred HHhCcHHHHHHHHhhhCCCCCccEEEeCCCC-c-cHHHHHHHcCCCceEe
Q 026707 95 WQIGPRSLCELVENMNGSGVPVDCIVYDSFL-P-WALDVAKKFGLVGAAF 142 (234)
Q Consensus 95 ~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f 142 (234)
.. ...+..++++ .+||+|++.... . ++...|+..|+|.+..
T Consensus 76 ~~--~~~~~~~i~~-----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 76 KG--VLQARKILKK-----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HH--HHHHHHHHHh-----cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 11 1123344433 468999987532 3 3456778889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.09 E-value=0.012 Score=50.68 Aligned_cols=115 Identities=18% Similarity=0.092 Sum_probs=64.9
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccc-ccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHH
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK-SLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLER 93 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (234)
+|+++.--..||+.....|++.|.++||+|++++.+.... ... ...+++++.++-.- ..+......+......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~-----~~~g~~~~~i~~~~-~~~~~~~~~l~~~~~~ 75 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLV-----PKAGIEFYFIPVGG-LRRKGSFRLIKTPLKL 75 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccc-----ccCCCceEEEeccC-cCCCChHHHHHHHHHH
Confidence 6788887777999977899999999999999998643211 110 11356666664211 0010000001111111
Q ss_pred HHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCc-c-HHHHHHHcCCCceEe
Q 026707 94 FWQIGPRSLCELVENMNGSGVPVDCIVYDSFLP-W-ALDVAKKFGLVGAAF 142 (234)
Q Consensus 94 ~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~-~-~~~vA~~lgiP~v~f 142 (234)
+.. ...+++++++ .+||+|++..... + +..+++..|+|.+.+
T Consensus 76 ~~~--~~~l~~~i~~-----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 76 LKA--VFQARRILKK-----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHH--HHHHHHHHHh-----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 111 1123344433 4689999975432 2 344677789999864
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.90 E-value=0.022 Score=49.36 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=66.2
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccC-CCCCCCCCCccCHHHHHH
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD-GYDEGGSAQTEGVEAYLE 92 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~ 92 (234)
.+|+++.-...||..-++.|++.|.++||+|++++......... ....+++++.++. +. . +......+.....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~----~~~~g~~~~~~~~~~~-~-~~~~~~~l~~~~~ 75 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARL----VPKAGIEFHFIPSGGL-R-RKGSLANLKAPFK 75 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc----cccCCCcEEEEeccCc-C-CCChHHHHHHHHH
Confidence 46777776666999999999999999999999998865221110 0113566666642 11 1 1000000111111
Q ss_pred HHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCC-ccH-HHHHHHcCCCceEe
Q 026707 93 RFWQIGPRSLCELVENMNGSGVPVDCIVYDSFL-PWA-LDVAKKFGLVGAAF 142 (234)
Q Consensus 93 ~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~-~~~-~~vA~~lgiP~v~f 142 (234)
.+.. ...+.+++++ .+||+|++.... .|. ..+++..++|.+..
T Consensus 76 ~~~~--~~~~~~~ik~-----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 76 LLKG--VLQARKILKR-----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHH--HHHHHHHHHh-----cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 1111 1123333432 468999999743 444 45566678999865
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.77 E-value=0.035 Score=48.92 Aligned_cols=103 Identities=11% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHhh
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENM 109 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 109 (234)
+.+||+.|+++||+|+++|....... . .+++++.++..-.... ....-...+.....+ ...+...+..+
T Consensus 13 ~~~la~~L~~~G~~v~~~~~~~~~~~------~--~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 81 (396)
T cd03818 13 FRHLAPALAAQGHEVVFLTEPNAAPP------P--GGVRVVRYRPPRGPTS-GTHPYLREFEEAVLR--GQAVARALLAL 81 (396)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCCC------C--CCeeEEEecCCCCCCC-CCCccchhHHHHHHH--HHHHHHHHHHH
Confidence 77899999999999999988654321 1 1577777653211111 000011111111111 11222222233
Q ss_pred hCCCCCccEEEeCCCCccHHHHHHHc-CCCceEec
Q 026707 110 NGSGVPVDCIVYDSFLPWALDVAKKF-GLVGAAFL 143 (234)
Q Consensus 110 ~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 143 (234)
..++.+||+|++....+++..+.+.+ ++|.+.+.
T Consensus 82 ~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 82 RAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 22335789999997666666677665 48888743
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.10 E-value=0.055 Score=47.89 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=32.7
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
++|++..--..||+.|- .|+++|.++|.+|+|+....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 67888887778999999 99999999999999988764
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.29 E-value=0.41 Score=42.64 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=37.6
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
+.+|+++...-.|+-.=+..+|+.|+++||+||+++.......-.. ....+|.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~---~~~~~v~~~~~~ 60 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEI---LSNPNITIHPLP 60 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHH---hcCCCEEEEECC
Confidence 3456666665666767778899999999999999986532211000 112467777664
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.26 E-value=0.12 Score=43.57 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=28.5
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
-|.||+.=.+.||++|.++|++|+|++.....
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 47899999999999999999999999987543
No 40
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.24 E-value=0.33 Score=41.00 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=26.2
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.|+-.-...|++.|+++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 488888999999999999999999986543
No 41
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.88 E-value=0.26 Score=42.74 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=57.6
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHH
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLC 103 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (234)
-|+-..+.+|++.|+++||+|+++++......... .....++.+..++.. +...............+. ..+.
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~ 92 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPI--VELAPGVRVVRVPAG--PAEYLPKEELWPYLDEFA----DDLL 92 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCc--cccccceEEEecccc--cccCCChhhcchhHHHHH----HHHH
Confidence 37888999999999999999999987544322110 011235666655421 111000000111111111 1122
Q ss_pred HHHHhhhCCCCCccEEEeCCCC-c-cHHHHHHHcCCCceEe
Q 026707 104 ELVENMNGSGVPVDCIVYDSFL-P-WALDVAKKFGLVGAAF 142 (234)
Q Consensus 104 ~ll~~l~~~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f 142 (234)
..++. ...++|+|++.... . .+..+++.+|+|.+..
T Consensus 93 ~~~~~---~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 93 RFLRR---EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHHh---cCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 22222 11268999887543 3 3457788899998753
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.58 E-value=0.24 Score=43.24 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=28.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+|++..--..||+.|-. +++.|.++++++.++...
T Consensus 3 ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 3 RIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred eEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 67777777779999998 999999987777776643
No 43
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.44 E-value=0.22 Score=43.22 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCCceEEEEeC--CCccChHHHHHHHHHHHhC--CCEEEEEeCcccccccccCCCCCCCCceEEeccC
Q 026707 11 CKRVHCLVLSY--PAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD 74 (234)
Q Consensus 11 ~~~~hv~~~p~--p~~GH~~P~l~La~~La~~--G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~ 74 (234)
++.++|+|+.- .|-||+-=.+.+|+.|+.. |++|+++|......... ...+++++.+|.
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~-----~~~gVd~V~LPs 69 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP-----GPAGVDFVKLPS 69 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC-----CcccCceEecCc
Confidence 44568998885 5669999999999999986 99999999876554332 235899999984
No 44
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.05 E-value=1.5 Score=38.70 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~ 51 (234)
+.+|++.|.++||+|+++|+..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999864
No 45
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.90 E-value=1.7 Score=34.06 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=52.4
Q ss_pred hCCCEEEEEeCcccccccccCCCCCCCCceEEeccC--CCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHhhhCCCCCc
Q 026707 39 HKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD--GYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNGSGVPV 116 (234)
Q Consensus 39 ~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 116 (234)
++||+|++++...... . . ++++.+.+.. +-.+....-..++ ...+.+ ...+.+.+.+|.+++-.|
T Consensus 1 q~gh~v~fl~~~~~~~-~------~-~GV~~~~y~~~~~~~~~~~~~~~~~---e~~~~r--g~av~~a~~~L~~~Gf~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPP-I------P-PGVRVVRYRPPRGPTPGTHPYVRDF---EAAVLR--GQAVARAARQLRAQGFVP 67 (171)
T ss_pred CCCCEEEEEecCCCCC-C------C-CCcEEEEeCCCCCCCCCCCcccccH---HHHHHH--HHHHHHHHHHHHHcCCCC
Confidence 4799999999543331 1 1 4677776642 1111111111112 112221 223444445555456678
Q ss_pred cEEEeCCCCccHHHHHHHc-CCCceEec
Q 026707 117 DCIVYDSFLPWALDVAKKF-GLVGAAFL 143 (234)
Q Consensus 117 d~vI~D~~~~~~~~vA~~l-giP~v~f~ 143 (234)
|+||...-.+.+.-+-+-+ ++|.+.|.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999998777777888888 89998863
No 46
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=92.37 E-value=2 Score=42.79 Aligned_cols=118 Identities=15% Similarity=0.054 Sum_probs=64.2
Q ss_pred cChHHHHHHHHHHHhCC--CEEEEEeCcccccccc-----c---CC----------CCCCCCceEEeccCCCCCCCCCCc
Q 026707 25 GHINPLLQFAKRLEHKG--LKVTLVTTYFISKSLH-----R---DS----------SSPSTSISLEAISDGYDEGGSAQT 84 (234)
Q Consensus 25 GH~~P~l~La~~La~~G--~~VT~vt~~~~~~~~~-----~---~~----------~~~~~~i~~~~l~~~~~~~~~~~~ 84 (234)
|+..=.++||++|+++| |+|+++|-........ . .. ....++.+++.+|.|- ...+-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP-~~~~l~K 274 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGP-RDKYIPK 274 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCC-CCCCcCH
Confidence 56777899999999998 8999999764332210 0 00 0012477888877552 2122122
Q ss_pred cCHHHHHHHHHHhCcHHHHH----HHHhhhC-CCCCccEEEeCCCC-cc-HHHHHHHcCCCceEec
Q 026707 85 EGVEAYLERFWQIGPRSLCE----LVENMNG-SGVPVDCIVYDSFL-PW-ALDVAKKFGLVGAAFL 143 (234)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~----ll~~l~~-~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~ 143 (234)
..+..++..|...+...+++ +.+++.. ....||+|-+-.+. ++ +..+++.+|||.+...
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~ 340 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTG 340 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEEC
Confidence 23333333333322222221 1222211 11248999888654 34 3688888999977643
No 47
>PLN00142 sucrose synthase
Probab=92.19 E-value=1.5 Score=42.59 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=24.5
Q ss_pred CCccEEEeCCCCc-cH-HHHHHHcCCCceEecc
Q 026707 114 VPVDCIVYDSFLP-WA-LDVAKKFGLVGAAFLT 144 (234)
Q Consensus 114 ~~~d~vI~D~~~~-~~-~~vA~~lgiP~v~f~~ 144 (234)
.+||+|++....+ ++ ..+|+++|||.+...-
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 4689999998764 54 6999999999996543
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.06 E-value=1.9 Score=36.47 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=26.5
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.|+-.-+..+++.|+++||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 589999999999999999999999876443
No 49
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=91.87 E-value=3.8 Score=29.94 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=56.5
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHH
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFW 95 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (234)
|+++.--...| ..++++.|.++|++|++++.....+... ...++.+..++-.. ........ +
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~-----~~~~i~~~~~~~~~--------k~~~~~~~-~- 63 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE-----IIEGIKVIRLPSPR--------KSPLNYIK-Y- 63 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh-----HhCCeEEEEecCCC--------CccHHHHH-H-
Confidence 55555444445 5688999999999999999954432221 12567777764221 01111111 1
Q ss_pred HhCcHHHHHHHHhhhCCCCCccEEEeCCCCc-cH-H-HHHHHcC-CCceE
Q 026707 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLP-WA-L-DVAKKFG-LVGAA 141 (234)
Q Consensus 96 ~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~-~~-~-~vA~~lg-iP~v~ 141 (234)
. .+..++++ .+||+|.+-...+ +. . .+++..| +|.+.
T Consensus 64 ---~-~l~k~ik~-----~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 64 ---F-RLRKIIKK-----EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred ---H-HHHHHhcc-----CCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 1 34444443 4689997777654 33 2 3445567 77774
No 50
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=91.33 E-value=2.6 Score=36.95 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=58.1
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHH
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSL 102 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (234)
..|--.-..+|+++|+++||+||++++......-.. .....++++..++..- -.+. ........+..+. ...+
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~~~---~~~~ 91 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPV--VEVAPGVRVRNVVAGP-YEGL-DKEDLPTQLCAFT---GGVL 91 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc--cccCCCcEEEEecCCC-cccC-CHHHHHHHHHHHH---HHHH
Confidence 356778899999999999999999997643211100 0112466776664221 0010 0001111111111 1122
Q ss_pred HHHHHhhhCCCCCccEEEeCCCC-cc-HHHHHHHcCCCceEecc
Q 026707 103 CELVENMNGSGVPVDCIVYDSFL-PW-ALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 103 ~~ll~~l~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~~ 144 (234)
+..+... ..++|+|-+..+. .| +..+++.+++|.+..+-
T Consensus 92 ~~~~~~~---~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 92 RAEARHE---PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HHHhhcc---CCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 2333221 2368988665532 23 34667778999886543
No 51
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.33 E-value=7.7 Score=37.69 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=65.3
Q ss_pred ceEEEEeCCC-------------ccChHHHHHHHHH--------HHhCCC----EEEEEeCcccccc-------cccCCC
Q 026707 14 VHCLVLSYPA-------------QGHINPLLQFAKR--------LEHKGL----KVTLVTTYFISKS-------LHRDSS 61 (234)
Q Consensus 14 ~hv~~~p~p~-------------~GH~~P~l~La~~--------La~~G~----~VT~vt~~~~~~~-------~~~~~~ 61 (234)
.+|+++..=+ -|+..=.++||++ |+++|| +|+++|-...... +.. .
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~--~ 333 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK--V 333 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc--c
Confidence 5777765443 4777778888887 468899 7778886533211 111 0
Q ss_pred CCCCCceEEeccCCCCCCC--CC---CccCHHHHHHHHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCc-cH-HHHHHH
Q 026707 62 SPSTSISLEAISDGYDEGG--SA---QTEGVEAYLERFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLP-WA-LDVAKK 134 (234)
Q Consensus 62 ~~~~~i~~~~l~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~-~~-~~vA~~ 134 (234)
...++.+++.+|-+- ..+ .. ...++..++..|. ....+.+.+.. +.+||+|++....+ ++ ..+|++
T Consensus 334 ~~~~~~~I~rvp~g~-~~~~~~~~~i~k~~l~p~l~~f~---~~~~~~~~~~~---~~~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 334 YGTEHAWILRVPFRT-ENGIILRNWISRFEIWPYLETFA---EDAEKEILAEL---QGKPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred cCCCceEEEEecCCC-CcccccccccCHHHHHHHHHHHH---HHHHHHHHHhc---CCCCCEEEECCCchHHHHHHHHHh
Confidence 122567777776442 111 00 1112222222222 12222232221 24689999987664 44 689999
Q ss_pred cCCCceE
Q 026707 135 FGLVGAA 141 (234)
Q Consensus 135 lgiP~v~ 141 (234)
+|||.+.
T Consensus 407 lgVP~v~ 413 (784)
T TIGR02470 407 LGVTQCT 413 (784)
T ss_pred cCCCEEE
Confidence 9999554
No 52
>PLN02275 transferase, transferring glycosyl groups
Probab=90.19 E-value=10 Score=33.11 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=37.7
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCC-EEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGL-KVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~-~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
..+.||++. +-.|.---|..+++.|+++|+ +||+++.......... ....+++++.++
T Consensus 4 ~~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~---~~~~~v~v~r~~ 62 (371)
T PLN02275 4 RGRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL---LNHPSIHIHLMV 62 (371)
T ss_pred ccEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH---hcCCcEEEEECC
Confidence 345566665 577888889999999999875 7999976433211110 122457777765
No 53
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=89.75 E-value=6.6 Score=34.03 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=25.5
Q ss_pred eEEEE-eCCCcc-ChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 15 HCLVL-SYPAQG-HINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 15 hv~~~-p~p~~G-H~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+|+++ |....| =-.-+..||+.|+++||+||++|+.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 45533 433333 3345689999999999999999975
No 54
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=89.16 E-value=5.8 Score=34.87 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=53.5
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCE 104 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (234)
|--.-..+|++.|+++||+|+++++......-.. ....+++++.+|....... ......... ...++.
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~i~v~~~p~~~~~~~----~~~~~~~~~-----~~~l~~ 82 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIR---YLTNGLKVYYLPFVVFYNQ----STLPTFFGT-----FPLLRN 82 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcc---cccCceeEEEecceeccCC----ccccchhhh-----HHHHHH
Confidence 5556789999999999999999997532211000 0113566666552110100 001011110 112333
Q ss_pred HHHhhhCCCCCccEEEeCCCC-cc---HHHHHHHcCCCceEe
Q 026707 105 LVENMNGSGVPVDCIVYDSFL-PW---ALDVAKKFGLVGAAF 142 (234)
Q Consensus 105 ll~~l~~~~~~~d~vI~D~~~-~~---~~~vA~~lgiP~v~f 142 (234)
.+.+ .+||+|.+-... .+ +..+++.+|+|.+..
T Consensus 83 ~~~~-----~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 83 ILIR-----ERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHHh-----cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 3332 368988665432 22 345678899998864
No 55
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=88.82 E-value=4.8 Score=35.05 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=61.3
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccc-cccccCCCCCCCCceEEeccCCCCCCCCCCccCHH-HHHHHHHHhCcHHH
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFIS-KSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVE-AYLERFWQIGPRSL 102 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 102 (234)
-|+.-+-++.++|-++||+|.+.+-.... ..+.. ..++.+..+.. .+ .+.. .+.....+ .-.+
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~-----~yg~~y~~iG~----~g----~~~~~Kl~~~~~R--~~~l 75 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLD-----LYGIDYIVIGK----HG----DSLYGKLLESIER--QYKL 75 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH-----HcCCCeEEEcC----CC----CCHHHHHHHHHHH--HHHH
Confidence 48999999999999999999877665322 11211 14666666532 11 1121 12222221 1123
Q ss_pred HHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchH
Q 026707 103 CELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCV 148 (234)
Q Consensus 103 ~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 148 (234)
-+++++ .+||++|+=. ...+..+|.-+|+|.+.|.=..-+
T Consensus 76 ~~~~~~-----~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 76 LKLIKK-----FKPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred HHHHHh-----hCCCEEEecC-cHHHHHHHHHhCCCeEEEecCchh
Confidence 333332 3689999632 245677999999999999876543
No 56
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=88.18 E-value=7 Score=35.04 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=55.3
Q ss_pred cChHHHHHHHHHHHhCCC--EEEEEeCccccccc----ccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhC
Q 026707 25 GHINPLLQFAKRLEHKGL--KVTLVTTYFISKSL----HRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIG 98 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~--~VT~vt~~~~~~~~----~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (234)
|=-.-+.+|+++|+++|| +|+++|........ .........+++++.++-+ +............+..+
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~--~~~~~~~~~~~~~~~~~---- 100 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG--PRRYLRKELLWPYLDEL---- 100 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC--CCCCcChhhhhhhHHHH----
Confidence 334567899999999997 99999964221100 0000001245677666532 11110111111111111
Q ss_pred cHHHHHHHHhhhCCCCCccEEEeCCCC-cc-HHHHHHHcCCCceEec
Q 026707 99 PRSLCELVENMNGSGVPVDCIVYDSFL-PW-ALDVAKKFGLVGAAFL 143 (234)
Q Consensus 99 ~~~l~~ll~~l~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~ 143 (234)
...+...+++ ...+||+|-+-.+. .+ +..+++.+|+|.+...
T Consensus 101 ~~~l~~~~~~---~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 101 ADNLLQHLRQ---QGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHHHHH---cCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 1223333432 12368999887543 23 3466777899987644
No 57
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=87.34 E-value=0.83 Score=33.74 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHh
Q 026707 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVEN 108 (234)
Q Consensus 29 P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 108 (234)
=+.+|++.|+++||+||+++.......-. ....++++..++-. ... .... ..... ..+++.+..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~-~~~~-~~~~~--------~~~~~~l~~ 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE----EEEDGVRVHRLPLP--RRP-WPLR-LLRFL--------RRLRRLLAA 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S----EEETTEEEEEE--S---SS-SGGG-HCCHH--------HHHHHHCHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc----cccCCceEEeccCC--ccc-hhhh-hHHHH--------HHHHHHHhh
Confidence 36789999999999999999765443211 01235777766521 111 0000 00011 123333311
Q ss_pred hhCCCCCccEEEeCCCC-ccHHHHHH-HcCCCceEe
Q 026707 109 MNGSGVPVDCIVYDSFL-PWALDVAK-KFGLVGAAF 142 (234)
Q Consensus 109 l~~~~~~~d~vI~D~~~-~~~~~vA~-~lgiP~v~f 142 (234)
. ..++|+|.+-... .+...+++ ..++|.+.-
T Consensus 70 --~-~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 70 --R-RERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp --C-T---SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred --h-ccCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 1 2578999877643 23445555 789999874
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.70 E-value=1 Score=38.64 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=30.4
Q ss_pred eEEEEeCCCc-cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 15 HCLVLSYPAQ-GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 15 hv~~~p~p~~-GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
+|+++.+|.. |.-.-..+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5666666555 788889999999999999999998754
No 59
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.53 E-value=1.5 Score=37.05 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=26.4
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
.|+-+.+..|++.|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 59999999999999999999999998654
No 60
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=84.11 E-value=1.7 Score=38.02 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCCceEEEEeCCCc-cChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 11 CKRVHCLVLSYPAQ-GHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 11 ~~~~hv~~~p~p~~-GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+++.+|+++..-.. ||..+...|++.|.++|++|.++...
T Consensus 2 ~~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 2 IKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 45568887776555 99999999999999999987666554
No 61
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=83.48 E-value=5.2 Score=35.82 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=40.7
Q ss_pred cchhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHH-hCCCEEEEEeCccccccc
Q 026707 2 ENIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 2 ~~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La-~~G~~VT~vt~~~~~~~~ 56 (234)
+.||+...+-.+.. +++...|+.|=..-.+++|..++ .+|..|-|++.+....++
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 34555553333443 55677799999999999999998 679999999988766544
No 62
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=83.44 E-value=18 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.3
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
|--.-...|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 555778999999999999999999754
No 63
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=83.38 E-value=2.9 Score=31.38 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
++++|++...++-+|-.-..-++..|.++|++|+++-..-..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 578899999999999999999999999999999998876655544
No 64
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=83.08 E-value=1.6 Score=32.84 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=22.9
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
|=-.-+..|++.|+++||+||+++.....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 56677899999999999999999776433
No 65
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=82.52 E-value=14 Score=30.59 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=26.8
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.|+-.-+..|++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 689999999999999999999999986544
No 66
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=82.45 E-value=2 Score=35.88 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=38.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
+|+++.....|+..-+..+++.|.++||+|+++++........ ...++++..++
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----~~~~~~~~~~~ 54 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL-----EALGVKVIPIP 54 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc-----ccCCceEEecc
Confidence 3565555567888999999999999999999999875543211 12356666554
No 67
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.94 E-value=1.6 Score=36.86 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 026707 21 YPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (234)
Q Consensus 21 ~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~ 54 (234)
--|.||+.=++.||+.|.++|+.++|++.+....
T Consensus 12 ~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 12 EIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred ccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 3477999999999999999999999999987443
No 68
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=81.62 E-value=2.6 Score=35.47 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.0
Q ss_pred eCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 20 SYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 20 p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
|....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 334568999999999999999999999987644
No 69
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=81.48 E-value=2.7 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=33.4
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
+|++.+.|+-.|-..+.-++..|.++|++|.++-.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 478899999999999999999999999999887654443
No 70
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=81.12 E-value=16 Score=30.95 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCE 104 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (234)
|--.-...|++.|+++||+|++++......... ...+++++.++-. . . ........+ ..+..
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-----~~~~~~~~~~~~~--~-~-----~~~~~~~~~-----~~l~~ 72 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAEL-----EAEGSRHIKLPFI--S-K-----NPLRILLNV-----ARLRR 72 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHH-----HhcCCeEEEcccc--c-c-----chhhhHHHH-----HHHHH
Confidence 455778999999999999999998754321111 1124555544311 0 0 111111111 12233
Q ss_pred HHHhhhCCCCCccEEEeCCCC-ccHH-HHHHHcCCCceEecc
Q 026707 105 LVENMNGSGVPVDCIVYDSFL-PWAL-DVAKKFGLVGAAFLT 144 (234)
Q Consensus 105 ll~~l~~~~~~~d~vI~D~~~-~~~~-~vA~~lgiP~v~f~~ 144 (234)
.+++ .++|+|++.... .|.. ..++.+|+|.+..+.
T Consensus 73 ~~~~-----~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 73 LIRE-----EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHHH-----cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 3332 468999887643 4543 456678999887554
No 71
>PRK06321 replicative DNA helicase; Provisional
Probab=80.46 E-value=7.6 Score=35.47 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=40.0
Q ss_pred chhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHHh-CCCEEEEEeCccccccc
Q 026707 3 NIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (234)
Q Consensus 3 ~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~~~~~ 56 (234)
+||+...+-.+.. +++-.-|+.|=..-.+++|+..+. .|..|-|++.+.....+
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 4555554334444 456777999999999999999984 68999999988665544
No 72
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=79.21 E-value=4.1 Score=36.82 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=30.6
Q ss_pred CCCceEEEEeCC----Cc-cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 11 CKRVHCLVLSYP----AQ-GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 11 ~~~~hv~~~p~p----~~-GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
+++.||+++..| .. |=-+=+.+|++.|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 556789977432 22 333567899999999999999999864
No 73
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=79.06 E-value=14 Score=25.14 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCcccccccc
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~~~~~ 57 (234)
++.+++.|++.|++| +.|....+.+.
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~ 27 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLR 27 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHH
Confidence 468999999999987 45555555554
No 74
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=77.55 E-value=6.7 Score=33.54 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=41.5
Q ss_pred hHhhhcCCCceEE-EEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccc
Q 026707 5 EKKAASCKRVHCL-VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKS 55 (234)
Q Consensus 5 ~~~~~~~~~~hv~-~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~ 55 (234)
.+.+....++|++ +.-.||.|--.-.-.|+++|.++||+|-++..++...+
T Consensus 42 ~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 42 RALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred HHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 3344566677766 88899999999999999999999999999988765543
No 75
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=77.12 E-value=3.2 Score=35.23 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=24.6
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
.|+-.....|++.|.++||+|++++..
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 588999999999999999999999864
No 76
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=76.98 E-value=43 Score=28.04 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCceEEEEeCCCccChHH-HHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 12 KRVHCLVLSYPAQGHINP-LLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P-~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
++.+|++.- --|--.| +..|++.|.+.| +|+++.+...++-.
T Consensus 4 ~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 4 KKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 445788776 3444444 677888888878 79988887666443
No 77
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=75.97 E-value=5.7 Score=31.70 Aligned_cols=45 Identities=9% Similarity=-0.115 Sum_probs=39.1
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
.+.+|++.+.++-.|-....-++..|.++|++|+++-.....+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTV 127 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 457999999999999999999999999999999998877655544
No 78
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.74 E-value=5.8 Score=31.67 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=37.3
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
+.+|++.+.++-.|-....-++..|.++|++|+++-.....+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 57999999999999999999999999999999887765444443
No 79
>PRK06904 replicative DNA helicase; Validated
Probab=75.28 E-value=10 Score=34.67 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=39.7
Q ss_pred chhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHHh-CCCEEEEEeCccccccc
Q 026707 3 NIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (234)
Q Consensus 3 ~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~~~~~ 56 (234)
.||....+-++.. +++-.-|+.|=..-++++|+..+. .|..|-|++.+.....+
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 3555443333444 456777999999999999999885 59999999998766554
No 80
>PRK08506 replicative DNA helicase; Provisional
Probab=75.11 E-value=8.1 Score=35.28 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=40.3
Q ss_pred chhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 3 NIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 3 ~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
.||....+-.+.. +++-.-|+.|=..-.+++|...+.+|..|-|++.+.....+
T Consensus 181 ~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 181 ELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred HHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 4554442233333 55677799999999999999999899999999998766554
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.17 E-value=8.9 Score=32.53 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=30.7
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
|=-.-..+|++.|.++||+|++++......... ....++++..++
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~----~~~~~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKE----TEYNGVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc----cccCCceEEEcC
Confidence 444667899999999999999999864432211 122467777665
No 82
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=71.86 E-value=65 Score=28.69 Aligned_cols=109 Identities=9% Similarity=0.011 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhC--CCEEEEEeCcccccc---c---ccC-CCCCCCCceEEecc---CCCCCCCCCCccCHHHHHHHHH
Q 026707 28 NPLLQFAKRLEHK--GLKVTLVTTYFISKS---L---HRD-SSSPSTSISLEAIS---DGYDEGGSAQTEGVEAYLERFW 95 (234)
Q Consensus 28 ~P~l~La~~La~~--G~~VT~vt~~~~~~~---~---~~~-~~~~~~~i~~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 95 (234)
--++..++.|.++ ||+|+++|+...... + .+. ......+++++.+. ..+++..... +..+...+.
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~ 94 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPR---FTLLGQALG 94 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCc---eeeHHHHHH
Confidence 4467788888887 899999999865532 1 000 00112345544431 2221111111 111111111
Q ss_pred HhCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHH-cCCCceEecccc
Q 026707 96 QIGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKK-FGLVGAAFLTQS 146 (234)
Q Consensus 96 ~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~-lgiP~v~f~~~~ 146 (234)
. +-..++.+.. ..||++|.+.-.+.+..+++. .++|.+.+.-.+
T Consensus 95 ~-----~~~~~~~~~~--~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 95 S-----MILGLEALLK--LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred H-----HHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 1 1111222211 358999988767777777775 478888765544
No 83
>PRK08760 replicative DNA helicase; Provisional
Probab=71.76 E-value=10 Score=34.68 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=39.4
Q ss_pred chhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHHh-CCCEEEEEeCccccccc
Q 026707 3 NIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (234)
Q Consensus 3 ~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~~~~~ 56 (234)
.||+...+-.+.. +++-.-|+.|=..-++++|...+. .|..|-|++.+.....+
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 4555443333333 556778999999999999999885 59999999988665544
No 84
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=70.59 E-value=23 Score=31.37 Aligned_cols=100 Identities=6% Similarity=0.019 Sum_probs=54.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCE--EEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHH
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLK--VTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLE 92 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~--VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (234)
.++-+=-.+.|.++-...|+++|.+++.+ |.+.++......+... ....++.+..+|-+. +
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~--~~~~~~~~~~~P~d~-~-------------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQA--LFGDDVEHRYLPYDL-P-------------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHH--hcCCCceEEEecCCc-H--------------
Confidence 34545556679999999999999987644 4333221111111110 011234444444221 0
Q ss_pred HHHHhCcHHHHHHHHhhhCCCCCccEEEeCCCCcc--HHHHHHHcCCCceEec
Q 026707 93 RFWQIGPRSLCELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFL 143 (234)
Q Consensus 93 ~~~~~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 143 (234)
..++.+++.+ +||+++.-..-.| ....+++.|+|.+...
T Consensus 114 -------~~~~~~l~~~-----~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 -------GAVRRFLRFW-----RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred -------HHHHHHHHhh-----CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 1234445543 5788875432334 3456788999999864
No 85
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.16 E-value=8 Score=30.03 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=24.5
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEe
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt 48 (234)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 86
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=69.12 E-value=14 Score=26.28 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=33.1
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
++++...+..-|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 6888999999999999999999999999999885543
No 87
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=68.24 E-value=8.4 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=27.0
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..|+..-...|++.|+++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 4499999999999999999999999886443
No 88
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=68.08 E-value=40 Score=23.80 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=50.9
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCE 104 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (234)
++-.=++.+++.|.+.|+++ +.|+...+.+.. .++.+..+... +. ..+.+.+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~------~gi~~~~v~~~--~~------------------~~~~i~~ 61 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQE------AGIPVEVVNKV--SE------------------GRPNIVD 61 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHH------cCCeEEEEeec--CC------------------CchhHHH
Confidence 34456889999999999987 456666555543 34554433211 11 1122333
Q ss_pred HHHhhhCCCCCccEEEeCCC-------CccHHHHHHHcCCCceE
Q 026707 105 LVENMNGSGVPVDCIVYDSF-------LPWALDVAKKFGLVGAA 141 (234)
Q Consensus 105 ll~~l~~~~~~~d~vI~D~~-------~~~~~~vA~~lgiP~v~ 141 (234)
.+++ ..+|+||.-.- ..+....|-++|||.+.
T Consensus 62 ~i~~-----~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 62 LIKN-----GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHc-----CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 3432 46888887331 24567889999999984
No 89
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=67.68 E-value=45 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCcccc
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
-.+|+++|.++||+|+..+.....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCc
Confidence 578999999999999887765543
No 90
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=66.07 E-value=10 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=26.6
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..|.-.-..+|++.|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4588888999999999999999999986543
No 91
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=65.53 E-value=11 Score=31.96 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.5
Q ss_pred eEEEEeC-CC-ccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 15 HCLVLSY-PA-QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 15 hv~~~p~-p~-~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
+|+++.. ++ .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 5665544 34 58889999999999999999999997654
No 92
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=65.33 E-value=8.2 Score=32.67 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=35.9
Q ss_pred cHHHHHHHHhhhCCCCCccEEEeCCCCcc-----HHHHHHHcCCCceEecccc
Q 026707 99 PRSLCELVENMNGSGVPVDCIVYDSFLPW-----ALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 99 ~~~l~~ll~~l~~~~~~~d~vI~D~~~~~-----~~~vA~~lgiP~v~f~~~~ 146 (234)
...++++++++.++..++-+||.|.|..- ..+.|.+.+||+|.+.-..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 45677777776544467899999999753 3577889999999987654
No 93
>PRK05636 replicative DNA helicase; Provisional
Probab=65.14 E-value=11 Score=34.79 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=38.6
Q ss_pred chhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHH-hCCCEEEEEeCccccccc
Q 026707 3 NIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 3 ~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La-~~G~~VT~vt~~~~~~~~ 56 (234)
+||.....-.+.. +++-.-|+.|=..-.+++|+..+ ++|..|-|++.+.....+
T Consensus 254 ~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 254 DLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 4555443333333 56778899999999999999887 468899999888665544
No 94
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=64.26 E-value=14 Score=27.06 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=30.6
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~ 57 (234)
||++.-..+.+=+. ..++.++|.++|++|+++.++...+.+.
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 55555544444444 9999999999999999999987665543
No 95
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=62.60 E-value=70 Score=25.04 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
...+|.+.--||.|-..-.+.++..|.++|++|-=+.|+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 456889999999999999999999999999999644443
No 96
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=62.41 E-value=14 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
.-.-+|+.+|+++|++||+.+.....+.-. ..+.+++...+|
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~----~~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKE----FEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCC----cccCCeEEEEeC
Confidence 556789999999999999998865543221 234678888775
No 97
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=61.88 E-value=15 Score=30.26 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=27.0
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..|+-.-+..|++.|.+.||+|++++.....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 5688899999999999999999999886543
No 98
>PRK00654 glgA glycogen synthase; Provisional
Probab=61.42 E-value=14 Score=33.35 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
|.-.-+-.|+++|+++||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 455667899999999999999999753
No 99
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=61.36 E-value=96 Score=25.88 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCcccccc
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFISKS 55 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~~~ 55 (234)
+..|++.|.+ +++|+++.+...++-
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 6778888865 579999988766653
No 100
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=61.33 E-value=17 Score=26.44 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=35.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
||++...++-.|-.-..-++..|..+|++|.++......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588899999999999999999999999999998876544433
No 101
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=60.95 E-value=16 Score=30.13 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=25.2
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.|...-+..|++.|+++||+|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 466677889999999999999999986554
No 102
>PLN02846 digalactosyldiacylglycerol synthase
Probab=60.25 E-value=17 Score=33.17 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCceEEEEeC---CCc-cChHHHHHHHHHHHhCC-CEEEEEeCcc
Q 026707 11 CKRVHCLVLSY---PAQ-GHINPLLQFAKRLEHKG-LKVTLVTTYF 51 (234)
Q Consensus 11 ~~~~hv~~~p~---p~~-GH~~P~l~La~~La~~G-~~VT~vt~~~ 51 (234)
+++.||++|+- |-. |=..-.+.++..|+++| |+|+++.+..
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 35678988874 444 66566677778999999 7999998854
No 103
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=59.56 E-value=21 Score=28.92 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=38.8
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
.+.+|++...++-.|-....=++..|.++|++|+++-..-..+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 467999999999999999999999999999999998876555444
No 104
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.74 E-value=1.2e+02 Score=26.27 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=63.5
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccc-cccccCCCCCCCCceEEeccCCCCCCCCCCccCHH-HHHHHHHHhCcHHH
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFIS-KSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVE-AYLERFWQIGPRSL 102 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 102 (234)
-|+.-+-++-+.|..+||+|-+.+-..-. .++.+ .-++.+..+.. .+. ..+. .+.....+ .-.|
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd-----~ygf~~~~Igk----~g~---~tl~~Kl~~~~eR--~~~L 76 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD-----LYGFPYKSIGK----HGG---VTLKEKLLESAER--VYKL 76 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH-----HhCCCeEeecc----cCC---ccHHHHHHHHHHH--HHHH
Confidence 47777889999999999998766554221 11211 13555554431 110 1222 22222222 1234
Q ss_pred HHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccchHH
Q 026707 103 CELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQSCVV 149 (234)
Q Consensus 103 ~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~ 149 (234)
.+++.+ .+||+.|. ...+-+..+|--+|+|.+.|.-..-+.
T Consensus 77 ~ki~~~-----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 77 SKIIAE-----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred HHHHhh-----cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 455543 46899998 666778999999999999998765443
No 105
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=58.30 E-value=15 Score=30.62 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=39.0
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~ 57 (234)
+..-++++--||.|=..=...++.+|..+|++|+|++++.....+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 4557889998998888888999999998899999999987776664
No 106
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=58.13 E-value=41 Score=26.68 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCccEE-EeCCCC-ccHHHHHHHcCCCceEecccc
Q 026707 114 VPVDCI-VYDSFL-PWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 114 ~~~d~v-I~D~~~-~~~~~vA~~lgiP~v~f~~~~ 146 (234)
..||+| |.|.-. ..+..-|.++|||.+++.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 457765 666654 356788999999999985443
No 107
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=57.44 E-value=24 Score=28.25 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCC--CCCccEEEeCCCCccHHHHHHHcCCCceEecccc
Q 026707 101 SLCELVENMNGS--GVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 101 ~l~~ll~~l~~~--~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (234)
.|+.+++..... ...+.+||+|---..+.+-|++.|||.+++..-.
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 456666554321 1357899999877778999999999999876544
No 108
>PRK07773 replicative DNA helicase; Validated
Probab=57.31 E-value=29 Score=34.41 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=34.3
Q ss_pred EEEEeCCCccChHHHHHHHHHHHh-CCCEEEEEeCccccccc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSL 56 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~~~~~ 56 (234)
+++-.-|+.|=..-.+++|...+. +|..|.|++.+....++
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 567777999999999999999986 48899999988766554
No 109
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=57.15 E-value=1.1e+02 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
+..|++.|.+ +++|+++.+...++-.
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSAT 41 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 5677788865 5799999887766543
No 110
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=56.80 E-value=11 Score=30.73 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.9
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
-|+..|.+.|..|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367899999999999999999998863
No 111
>PRK09165 replicative DNA helicase; Provisional
Probab=56.44 E-value=38 Score=31.21 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=38.7
Q ss_pred chhHhhhcCCCce-EEEEeCCCccChHHHHHHHHHHHhC---------------CCEEEEEeCccccccc
Q 026707 3 NIEKKAASCKRVH-CLVLSYPAQGHINPLLQFAKRLEHK---------------GLKVTLVTTYFISKSL 56 (234)
Q Consensus 3 ~~~~~~~~~~~~h-v~~~p~p~~GH~~P~l~La~~La~~---------------G~~VT~vt~~~~~~~~ 56 (234)
.||....+-.+.. +++..-|+.|=..-++++|...+.+ |..|.|++.+.....+
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 3555443333333 5567779999999999999988753 7889999988766554
No 112
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=55.56 E-value=30 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCccChHHHHHHHHHHHhC-CCEEEEEeCc
Q 026707 22 PAQGHINPLLQFAKRLEHK-GLKVTLVTTY 50 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~~-G~~VT~vt~~ 50 (234)
..+..+.=+..|.++|.++ |+++.++.|.
T Consensus 7 gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg 36 (363)
T cd03786 7 GTRPEYIKLAPLIRALKKDPGFELVLVVTG 36 (363)
T ss_pred ecCHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4455566667777788876 8999977774
No 113
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=54.78 E-value=11 Score=30.95 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 556789999999999999999864
No 114
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=54.68 E-value=13 Score=33.57 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
.-+-.|+++|+++||+|+++++..
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 456789999999999999999753
No 115
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.94 E-value=30 Score=26.23 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=34.7
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
.++++|++.+...-||=.=.--+++.|++.|++|......
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 4789999999887799999999999999999999765443
No 116
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=51.31 E-value=27 Score=23.30 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.0
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEE
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTL 46 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~ 46 (234)
.-++++.-....|..=+-++|+.|+++|+.|..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEE
Confidence 446666666679999999999999999988763
No 117
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=50.70 E-value=18 Score=28.58 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCEEEEEeCcc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~ 51 (234)
..||+.+..+|++||+++.+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999999873
No 118
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.44 E-value=27 Score=27.08 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHH-HhCCCEEEEEeCcccccccccCCCCCCCCceEEeccC-------------CCCCC----CCCC-cc
Q 026707 25 GHINPLLQFAKRL-EHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD-------------GYDEG----GSAQ-TE 85 (234)
Q Consensus 25 GH~~P~l~La~~L-a~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~-------------~~~~~----~~~~-~~ 85 (234)
+.+.=.+..++++ .+.|.+|-+.-. .+...++. . .++.++.++- ...+. ++.. ..
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~----~-~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRK----H-VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIP 90 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHC----C--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SC
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHH----h-CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccH
Confidence 5677778899999 788888865443 34444432 1 1344444421 00000 0111 11
Q ss_pred CHHHHHHHHHH-------hCcHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecccc
Q 026707 86 GVEAYLERFWQ-------IGPRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 86 ~~~~~~~~~~~-------~~~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 146 (234)
+...+...+.. ...+.++..+.++.. .++|+||-+.. +...|+++|+|.+.+.++-
T Consensus 91 ~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~--~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 91 GLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA--EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp CHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH--TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH--cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 22222222211 023566677776654 46899999874 6899999999999887743
No 119
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=49.15 E-value=87 Score=28.16 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=27.0
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
.++.++..|.. ...+++.|.+-|.+|..+.|.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 47888887777 888999999999999988765
No 120
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=47.56 E-value=29 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=27.2
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4688899999999999999999999986544
No 121
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=47.26 E-value=1.7e+02 Score=24.52 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHHHhC---CCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHH
Q 026707 30 LLQFAKRLEHK---GLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELV 106 (234)
Q Consensus 30 ~l~La~~La~~---G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 106 (234)
+..|++.|... |++|+++.+...++-...+. .-...+++..+.++. +.....+.+-.. -.+..++
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai-T~~~pl~~~~~~~~~----yav~GTPaDCV~-------lal~~~~ 83 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI-SYTHPMMIAELGPRR----FAAEGSPADCVL-------AALYDVM 83 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc-cCCCCeEEEEeCCCe----EEEcCchHHHHH-------HHHHHhc
Confidence 45677777663 36999998887665443210 011235555543211 111111111110 0122222
Q ss_pred HhhhCCCCCccEEEe----------CCCCccH---HHHHHHcCCCceEecc
Q 026707 107 ENMNGSGVPVDCIVY----------DSFLPWA---LDVAKKFGLVGAAFLT 144 (234)
Q Consensus 107 ~~l~~~~~~~d~vI~----------D~~~~~~---~~vA~~lgiP~v~f~~ 144 (234)
. ..+||+||+ |.+.+.+ +.-|.-+|||.+.++.
T Consensus 84 ~-----~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 84 K-----DAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred C-----CCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1 135788887 4444433 3455568999999985
No 122
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=46.99 E-value=20 Score=32.45 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
|=-.-+-.|+++|+++||+|+++++..
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 334556899999999999999999754
No 123
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.43 E-value=69 Score=26.63 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=34.1
Q ss_pred HHHHHHHhhhCCCCCccEEEeCCCCc--cHHHHHHHcCCCceEecccchHHHHH
Q 026707 101 SLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCVVDCI 152 (234)
Q Consensus 101 ~l~~ll~~l~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~~~~ 152 (234)
.++++++.+.+ .++.||+++.... .+..+|++.|+|.+.+.+.+...+..
T Consensus 205 ~l~~l~~~ik~--~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~ 256 (266)
T cd01018 205 DLKRLIDLAKE--KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEEN 256 (266)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHH
Confidence 34445544432 4689999998765 35699999999998887665443333
No 124
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=45.84 E-value=45 Score=27.97 Aligned_cols=27 Identities=19% Similarity=0.066 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 26 HINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
--.-+.++++.|.++||+|++++....
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 345689999999999999999987543
No 125
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.31 E-value=24 Score=31.57 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.6
Q ss_pred eEEEEeCC-Cc--cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 15 HCLVLSYP-AQ--GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 15 hv~~~p~p-~~--GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
-+-+=|.. .- ||+.|++.| +.|...||+|+++....
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 34455554 22 999999987 46788999999988753
No 126
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=44.70 E-value=85 Score=24.93 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 29 P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
-+..||+.|.+.|+++ +.|....+.+.. .+|.+..+.
T Consensus 12 ~l~~lAk~L~~lGf~I--~AT~GTAk~L~e------~GI~v~~V~ 48 (187)
T cd01421 12 GLVEFAKELVELGVEI--LSTGGTAKFLKE------AGIPVTDVS 48 (187)
T ss_pred cHHHHHHHHHHCCCEE--EEccHHHHHHHH------cCCeEEEhh
Confidence 3678999999999987 466666666654 356666554
No 127
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=44.50 E-value=25 Score=25.86 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHhhhCCCCCccEEEeCCCCc--cHHHHHHHcCCCceEecc
Q 026707 102 LCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 102 l~~ll~~l~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 144 (234)
-++.++++... .+|.+||++.+.. +..++|++.|+|.....-
T Consensus 70 r~~~l~~l~~~-~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 70 RKERLEKLFSY-NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HCCHHHHHCTT-T-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 33556665543 5788999998863 678999999999987544
No 128
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=44.30 E-value=1.2e+02 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=20.2
Q ss_pred CCCccChHHHHHHHHHH-HhCCCEEEEEeC
Q 026707 21 YPAQGHINPLLQFAKRL-EHKGLKVTLVTT 49 (234)
Q Consensus 21 ~p~~GH~~P~l~La~~L-a~~G~~VT~vt~ 49 (234)
..+-||..=|+.|.+.+ -++....+++.+
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt 34 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVT 34 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 34669999999999999 344444444443
No 129
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=44.18 E-value=28 Score=29.41 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=26.8
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..-|.-.-+..+++.|.++||+|++++.....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 34588889999999999999999999976433
No 130
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=43.98 E-value=26 Score=28.00 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccCCCCCCCCCC--ccCHHHHHHHHHHhCcHHHHHHHH
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQ--TEGVEAYLERFWQIGPRSLCELVE 107 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ll~ 107 (234)
+..|.+.|.+.||+|+++.+..+++-..... .....+++.....+..+.+... .+..+. +.+.=.+.
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si-t~~~pl~~~~~~~~~~~~~~~~~~v~GTPa----------Dcv~~al~ 84 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGTGHSI-TLHKPLRVTEVEPGHDPGGVEAYAVSGTPA----------DCVKLALD 84 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTSTTS---SSSEEEEEEEE-TTCCSTTEEEEESS-HH----------HHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCcceee-cCCCCeEEEEEEecccCCCCCEEEEcCcHH----------HHHHHHHH
Confidence 6788999977889999999987765432210 0112344433321111111111 122211 11111222
Q ss_pred hhhCCCCCccEEEeC----------CCCccH---HHHHHHcCCCceEecccch
Q 026707 108 NMNGSGVPVDCIVYD----------SFLPWA---LDVAKKFGLVGAAFLTQSC 147 (234)
Q Consensus 108 ~l~~~~~~~d~vI~D----------~~~~~~---~~vA~~lgiP~v~f~~~~a 147 (234)
.+... .+||+||+- .+...+ ..-|...|||.+.|+...-
T Consensus 85 ~~~~~-~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 85 GLLPD-KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp CTSTT-SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred hhhcc-CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 33221 358999974 333332 4455567999999986544
No 131
>PLN02891 IMP cyclohydrolase
Probab=43.28 E-value=63 Score=29.99 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEeccC
Q 026707 27 INPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAISD 74 (234)
Q Consensus 27 ~~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~~ 74 (234)
=.=+..||+.|.++|++ +++|....+.+.. .+|.+..+.+
T Consensus 32 Ktgi~~fAk~L~~~gve--IiSTgGTak~L~e------~Gi~v~~Vsd 71 (547)
T PLN02891 32 KTDLALLANGLQELGYT--IVSTGGTASALEA------AGVSVTKVEE 71 (547)
T ss_pred ccCHHHHHHHHHHCCCE--EEEcchHHHHHHH------cCCceeeHHh
Confidence 34478999999999865 6788877777754 4677776654
No 132
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=42.42 E-value=47 Score=26.57 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=30.0
Q ss_pred CceEEEEeCCCccChHH-HHHHHHHHHhCCCEEEEEeCccccc
Q 026707 13 RVHCLVLSYPAQGHINP-LLQFAKRLEHKGLKVTLVTTYFISK 54 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P-~l~La~~La~~G~~VT~vt~~~~~~ 54 (234)
..+|++- ..|.+...- ...|+++|.++|++|+++.|+...+
T Consensus 5 ~k~Illg-VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 5 GKRIGFG-LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCEEEEE-EcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 3455533 345555565 6999999999999999999986554
No 133
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=42.29 E-value=1.7e+02 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhCCCCCccEEEeCCCCc--cHHHHHHHcCCCceEecccchH
Q 026707 100 RSLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCV 148 (234)
Q Consensus 100 ~~l~~ll~~l~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~ 148 (234)
+.-++.++++.+. .+|.+||++.+.. +...+|++.++|.+...-.+..
T Consensus 69 e~~~~~~~~~~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 69 EEQKQIIHNLLTL-NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 3445566666543 5678889987764 5679999999999986655443
No 134
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=41.94 E-value=42 Score=21.97 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccc
Q 026707 29 PLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 29 P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
.-+++|..|++.|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 357899999999999999877543
No 135
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=41.65 E-value=43 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=38.3
Q ss_pred cCCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 10 SCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 10 ~~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
+..+..+-+.|..|.+.+.|.-++.++|.+.-.++.++|+....
T Consensus 43 ~~g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDI 86 (144)
T PF10657_consen 43 RYGKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDI 86 (144)
T ss_pred cCCceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCe
Confidence 34567889999999999999999999999988999999997543
No 136
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=41.10 E-value=74 Score=26.15 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=41.9
Q ss_pred cchhHhhhcCCCc-eEEEEeCCCccChHHHHHHHHHHHhC-CCEEEEEeCccccccc
Q 026707 2 ENIEKKAASCKRV-HCLVLSYPAQGHINPLLQFAKRLEHK-GLKVTLVTTYFISKSL 56 (234)
Q Consensus 2 ~~~~~~~~~~~~~-hv~~~p~p~~GH~~P~l~La~~La~~-G~~VT~vt~~~~~~~~ 56 (234)
+.||..+..-.+. =+++-..|+.|-..-++++|..++.+ |+.|-+++.+.....+
T Consensus 7 ~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 7 PALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp HHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred HHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 4677776433343 35577889999999999999999987 6999999998766554
No 137
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=40.93 E-value=83 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 29 PLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 29 P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
=+..|++.|.+.|++| +.|....+.+.. .+|.+..+.
T Consensus 12 ~iv~lAk~L~~lGfeI--iATgGTak~L~e------~GI~v~~Vs 48 (511)
T TIGR00355 12 GIVEFAQGLVERGVEL--LSTGGTAKLLAE------AGVPVTEVS 48 (511)
T ss_pred cHHHHHHHHHHCCCEE--EEechHHHHHHH------CCCeEEEee
Confidence 3678999999999887 467667666654 356665554
No 138
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=40.87 E-value=49 Score=27.41 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 21 YPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 21 ~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
+..-|+-..+..|++.|.+.|++|.+++....
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 34468999999999999999999999987543
No 139
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=40.63 E-value=39 Score=21.70 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 026707 31 LQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~ 50 (234)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788899999999998543
No 140
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=40.04 E-value=46 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=29.8
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
+|++.-..+.| ..-...+.++|.++|++|.++.|+...+.+
T Consensus 3 ~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 3 NILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred EEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 45554444444 444899999999999999999998766544
No 141
>PTZ00445 p36-lilke protein; Provisional
Probab=38.61 E-value=37 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.7
Q ss_pred cChHH-HHHHHHHHHhCCCEEEEEeCccc
Q 026707 25 GHINP-LLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 25 GH~~P-~l~La~~La~~G~~VT~vt~~~~ 52 (234)
+|..| +..|.++|.+.|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56677 88999999999999999987654
No 142
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.10 E-value=54 Score=27.24 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=23.8
Q ss_pred CccEE-EeCCCCc-cHHHHHHHcCCCceEecccc
Q 026707 115 PVDCI-VYDSFLP-WALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 115 ~~d~v-I~D~~~~-~~~~vA~~lgiP~v~f~~~~ 146 (234)
-||++ |.|.-.- -+..-|+++|||.+.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 37755 7888653 46788999999999975443
No 143
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=37.89 E-value=55 Score=27.00 Aligned_cols=45 Identities=24% Similarity=0.168 Sum_probs=38.7
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~ 57 (234)
..-+++.-.|+.|..+-.++++...+++|..|-++++......+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELL 67 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHH
Confidence 345778888999999999999999999999999999987665543
No 144
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.72 E-value=67 Score=22.74 Aligned_cols=37 Identities=16% Similarity=-0.028 Sum_probs=31.1
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
++....++..|-....-++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5667778889999999999999999999998865433
No 145
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=37.52 E-value=4.7 Score=22.52 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=14.7
Q ss_pred EeCCCccChHHHHHHHHHHHhCC
Q 026707 19 LSYPAQGHINPLLQFAKRLEHKG 41 (234)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~~G 41 (234)
=.||+||-+||-+++---|-+.|
T Consensus 16 PTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CcCCCCCCCCccccccccCCCCC
Confidence 35789999998766544333333
No 146
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=1.2e+02 Score=26.76 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccc--ccccccCCCCCCCCceEEecc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI--SKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~--~~~~~~~~~~~~~~i~~~~l~ 73 (234)
+++.|++++-..-.||--=|--=|.-||..|++|+++.-... .+.+. ++++|+++.++
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~-----~hprI~ih~m~ 69 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL-----NHPRIRIHGMP 69 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh-----cCCceEEEeCC
Confidence 456678877777789887788889999999999998754332 22222 35899999886
No 147
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.32 E-value=48 Score=27.12 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=30.6
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~ 49 (234)
+-|++.-+|+.|-..-.-+|++.|.+++++|..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 346778899999999999999999999998765544
No 148
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=36.89 E-value=61 Score=27.20 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=24.4
Q ss_pred chhHhhhcCCCceEEEEeCCCc-cChHHHHHHHHHHHhCCC
Q 026707 3 NIEKKAASCKRVHCLVLSYPAQ-GHINPLLQFAKRLEHKGL 42 (234)
Q Consensus 3 ~~~~~~~~~~~~hv~~~p~p~~-GH~~P~l~La~~La~~G~ 42 (234)
++|..+....+.+++++..|.. |.+.++-++++...++|.
T Consensus 144 ~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~ 184 (294)
T cd00615 144 TFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL 184 (294)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC
Confidence 4555553334556666655543 777777777777766664
No 149
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.68 E-value=70 Score=23.85 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEeCCCc-cChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 18 VLSYPAQ-GHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 18 ~~p~p~~-GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
++-.|-. -.+...+-++.+|-++|++||+..++...+.+
T Consensus 8 ~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 8 SLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred EecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 3444433 34555788999999999999999987655433
No 150
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.64 E-value=72 Score=25.31 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
|+++-..|.|=..-...||.++..+|.+|.+++++...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 55777788899999999999999999999999997554
No 151
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=36.59 E-value=59 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.3
Q ss_pred ccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 24 QGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
.|--.-...|++.|+++||.|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 36667889999999999999999987543
No 152
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=36.21 E-value=94 Score=22.33 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
||++..-++.|=......|++.|+++|.+|-++.+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4777888899999999999999999999999888775
No 153
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=36.10 E-value=34 Score=30.32 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=20.8
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
||+.|++.| +.|.+.||++.++...
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 999997776 6888899999988754
No 154
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=36.02 E-value=30 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.3
Q ss_pred EeCCCc-cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 19 LSYPAQ-GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 19 ~p~p~~-GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
+|||.. |.-+=+.++++.|+++ |+||++|-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 678776 9999999999999776 8999998754
No 155
>PRK09620 hypothetical protein; Provisional
Probab=35.76 E-value=42 Score=27.48 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 026707 31 LQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~ 50 (234)
.+||+.|..+|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 67899999999999999754
No 156
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=35.20 E-value=64 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.021 Sum_probs=21.4
Q ss_pred CCccEEE-eCC--CCccHHHHHHHc--CCCceEecccc
Q 026707 114 VPVDCIV-YDS--FLPWALDVAKKF--GLVGAAFLTQS 146 (234)
Q Consensus 114 ~~~d~vI-~D~--~~~~~~~vA~~l--giP~v~f~~~~ 146 (234)
.+||++| .|. |......-+++. |||.+.|.+-.
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 4678765 586 334456677777 79988765433
No 157
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.97 E-value=1.3e+02 Score=28.49 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=25.1
Q ss_pred HHHHHHhhhCCCCCccEEEe-CC--CCccHHHHHHHcCC--CceEecc
Q 026707 102 LCELVENMNGSGVPVDCIVY-DS--FLPWALDVAKKFGL--VGAAFLT 144 (234)
Q Consensus 102 l~~ll~~l~~~~~~~d~vI~-D~--~~~~~~~vA~~lgi--P~v~f~~ 144 (234)
++++.+.+.+ .+||++|. |. |......-+++.|+ |.+.|.+
T Consensus 299 ~~~l~~~i~~--~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 299 YRKLYKTILK--TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 3444444433 46887765 86 33345678888896 8776644
No 158
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=34.64 E-value=62 Score=25.66 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=26.8
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
+|++--..+.|=+.-.+.+.++|.+.|++|+++.|+...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 344333333444444469999999999999999887654
No 159
>PRK04940 hypothetical protein; Provisional
Probab=34.64 E-value=83 Score=24.82 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=26.9
Q ss_pred ccEEEeCCCC-ccHHHHHHHcCCCceEecccchHHH
Q 026707 116 VDCIVYDSFL-PWALDVAKKFGLVGAAFLTQSCVVD 150 (234)
Q Consensus 116 ~d~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~a~~~ 150 (234)
+.++|--.+- .|+..+|.++|+|.|.+.++--...
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHH
Confidence 4566666655 4899999999999999988755433
No 160
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=34.55 E-value=43 Score=27.32 Aligned_cols=20 Identities=40% Similarity=0.343 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 026707 31 LQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~ 50 (234)
..||++|+++|++|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57889999999999998743
No 161
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=34.07 E-value=1.4e+02 Score=23.78 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=38.6
Q ss_pred cchhHhhh-cCCCceE-EEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 2 ENIEKKAA-SCKRVHC-LVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 2 ~~~~~~~~-~~~~~hv-~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+.||..+. .-.+.++ .+.-.|+.|...-.++++...+..|..|.|++++
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34666663 2234555 4777788899999999999999999999999998
No 162
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=34.01 E-value=56 Score=22.98 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.|.+.+++.|.++|.+|.+.=+.-..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccCh
Confidence 68999999999999998887654433
No 163
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.77 E-value=56 Score=25.58 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=27.4
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 22 PAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
.|.+...-...|.+.|.++|++|.++.|+...+.+
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 35555666679999999999999999998766554
No 164
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=33.45 E-value=1.5e+02 Score=24.94 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCCceEE-EEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 026707 11 CKRVHCL-VLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (234)
Q Consensus 11 ~~~~hv~-~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~ 54 (234)
..+.|++ +.-.|+-|--.-.-.|++.|.++|++|-++..++...
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 3455555 8888999999999999999999999999998876554
No 165
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=33.33 E-value=50 Score=25.46 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=26.3
Q ss_pred cCCCceEEEEeCCCccCh-HHHHHHHHHHHhCCCEEEEEeC
Q 026707 10 SCKRVHCLVLSYPAQGHI-NPLLQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 10 ~~~~~hv~~~p~p~~GH~-~P~l~La~~La~~G~~VT~vt~ 49 (234)
..+..+|+++.-+ |+= -=-+.+||.|+++|++|+++..
T Consensus 22 ~~~~~~v~il~G~--GnNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 22 SPKGPRVLILCGP--GNNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CCTT-EEEEEE-S--SHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCeEEEEECC--CCChHHHHHHHHHHHHCCCeEEEEEE
Confidence 4567788988844 322 2257789999999999998544
No 166
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=33.22 E-value=1e+02 Score=25.25 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=22.5
Q ss_pred CCCceEE-EEeCCCc-cChHHHHHHHHHHHhCCCE
Q 026707 11 CKRVHCL-VLSYPAQ-GHINPLLQFAKRLEHKGLK 43 (234)
Q Consensus 11 ~~~~hv~-~~p~p~~-GH~~P~l~La~~La~~G~~ 43 (234)
.++.|++ ++.-.|. ||++=+..|++.+.++|..
T Consensus 27 ~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 27 GGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVK 61 (223)
T ss_dssp T--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-S
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCC
Confidence 3578988 5555555 9999999999999999965
No 167
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.03 E-value=1e+02 Score=20.59 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=26.5
Q ss_pred ceEEEEeCCCc--cChHHHHHHHHHHHhCCCEEEEEe
Q 026707 14 VHCLVLSYPAQ--GHINPLLQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 14 ~hv~~~p~p~~--GH~~P~l~La~~La~~G~~VT~vt 48 (234)
-+|+++|.... .+..-...++..|.+.|++|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 36788887653 456678888999988999998744
No 168
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=33.00 E-value=31 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=15.9
Q ss_pred CCccChHHHHHHHHHHHh
Q 026707 22 PAQGHINPLLQFAKRLEH 39 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~ 39 (234)
|-.|-.||+++|+-.|+-
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 678999999999999874
No 169
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=32.51 E-value=70 Score=25.13 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHHHHHhhhCCCCCccEEEeCCCCcc--HHHHHHHcCCCceEeccc
Q 026707 101 SLCELVENMNGSGVPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLTQ 145 (234)
Q Consensus 101 ~l~~ll~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 145 (234)
.++.+|+.. ..+.-+|.|.|++. +..+|.++|--++.+=..
T Consensus 180 l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~ 222 (231)
T PF01555_consen 180 LIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEID 222 (231)
T ss_dssp HHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHhh----hccceeeehhhhccChHHHHHHHcCCeEEEEeCC
Confidence 344555543 23467899999975 468899999888876443
No 170
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.08 E-value=76 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=20.6
Q ss_pred CCccEEEeCCCCccHHHHHHHcCCCceEe
Q 026707 114 VPVDCIVYDSFLPWALDVAKKFGLVGAAF 142 (234)
Q Consensus 114 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 142 (234)
.+||++|.+. +...+|+++|+|.+.+
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~ 394 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVI 394 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEE
Confidence 3688888886 4667789999999876
No 171
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.88 E-value=63 Score=22.82 Aligned_cols=44 Identities=9% Similarity=0.218 Sum_probs=30.1
Q ss_pred hhHhhhcCCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEe
Q 026707 4 IEKKAASCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 4 ~~~~~~~~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (234)
+...+ ...++.++.+......++..+..+++.+.+++-++.++.
T Consensus 43 l~~~~-~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 43 LVEAL-RAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHH-HHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHH-hcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 33434 234788888887777888888999988777655544443
No 172
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=31.86 E-value=1.1e+02 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHh-CC--CEEEEEeC
Q 026707 26 HINPLLQFAKRLEH-KG--LKVTLVTT 49 (234)
Q Consensus 26 H~~P~l~La~~La~-~G--~~VT~vt~ 49 (234)
|...-..|+++|.+ +| .+|.++-.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~ 27 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDF 27 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEeh
Confidence 66777888888877 44 55555444
No 173
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=31.59 E-value=1e+02 Score=24.86 Aligned_cols=44 Identities=9% Similarity=-0.014 Sum_probs=29.9
Q ss_pred HHHHHHHhhhCCC--CCccEEEeCCCCccHHHHHHHcCCCceEecc
Q 026707 101 SLCELVENMNGSG--VPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 101 ~l~~ll~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 144 (234)
.++.+++.+.+.. ..+.+||+|--..-+...|++.|||...+-.
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4556665553321 2467899996444578999999999987644
No 174
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=31.46 E-value=55 Score=25.73 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=24.5
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
|-+.- .+|.++|.++|++|.++.|+...+.+
T Consensus 11 aa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 11 GVIYG-IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHH-HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 44433 78999999999999999998776554
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=31.41 E-value=98 Score=21.96 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=30.3
Q ss_pred cCCCceEEEEeCCCccChHHHHHHHHHHHhCCC-EEEEEeCc
Q 026707 10 SCKRVHCLVLSYPAQGHINPLLQFAKRLEHKGL-KVTLVTTY 50 (234)
Q Consensus 10 ~~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~-~VT~vt~~ 50 (234)
...++.++.+.+....|.....++++.+.+++. ++.++...
T Consensus 47 ~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 47 KEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 455777888887777888888888888888776 66655443
No 176
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=31.34 E-value=2.6e+02 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=20.0
Q ss_pred CCccEEEeCCCC--ccHHHHHHHcCCCceEe
Q 026707 114 VPVDCIVYDSFL--PWALDVAKKFGLVGAAF 142 (234)
Q Consensus 114 ~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f 142 (234)
.+||+|.+-... .++..+++++|+|.+..
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 368988764332 23457789999999873
No 177
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.32 E-value=1.1e+02 Score=23.16 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=32.9
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
+++.-.||.|=......|+..++++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45677789999999999999999999999999987554
No 178
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=31.24 E-value=3.7e+02 Score=23.77 Aligned_cols=102 Identities=18% Similarity=0.025 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHh--CCCEEE---EEeCcccccc-cccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHHHHHH-hCcH
Q 026707 28 NPLLQFAKRLEH--KGLKVT---LVTTYFISKS-LHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLERFWQ-IGPR 100 (234)
Q Consensus 28 ~P~l~La~~La~--~G~~VT---~vt~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (234)
.--+.++++|.+ .|++|. ++.+..-.++ .. +. .+ .+..+| ..|+... .....+..+.+ ....
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~i----p~-~g-~~~~~~----sgg~~~~-~~~~~~~~~~~gl~~~ 79 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGI----PI-IG-PTKELP----SGGFSYQ-SLRGLLRDLRAGLVGL 79 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCC----ce-eC-CCCCCC----CCCccCC-CHHHHHHHHHhhHHHH
Confidence 456788999987 699999 8887644321 11 00 12 333333 2222211 12222111111 1111
Q ss_pred HHH--HHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEecc
Q 026707 101 SLC--ELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 101 ~l~--~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 144 (234)
.++ .+++++. .+||+||.=.=+. ....|...|+|.+.+-|
T Consensus 80 ~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 80 TLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 112 2344442 2578776533222 66788889999998444
No 179
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.23 E-value=34 Score=25.65 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccccccccc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYFISKSLHR 58 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~~~~~~~~ 58 (234)
--.+-|+.+|-++|++|++..++...+.++.
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 3467889999999999999999877765543
No 180
>CHL00175 minD septum-site determining protein; Validated
Probab=31.19 E-value=1.2e+02 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=35.3
Q ss_pred hHhhhcCCCceEEEEeC--CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 5 EKKAASCKRVHCLVLSY--PAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 5 ~~~~~~~~~~hv~~~p~--p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
|.|....++.+++.|.. +|.|=..-...||..|+++|.+|-++=.+.
T Consensus 6 ~~~~~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 6 EDKEKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred hhhhhcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45665566666665543 666888999999999999999988886654
No 181
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.13 E-value=1.5e+02 Score=23.85 Aligned_cols=47 Identities=23% Similarity=0.147 Sum_probs=31.5
Q ss_pred hhHhhhcCCCceEEEEeCCCccCh-HHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 4 IEKKAASCKRVHCLVLSYPAQGHI-NPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 4 ~~~~~~~~~~~hv~~~p~p~~GH~-~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
+.++....+..||+++.-|+- = ==-+-.||.|..+|+.||++.....
T Consensus 40 i~~~~~~~~~~~v~vlcG~Gn--NGGDG~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 40 ILREYPLGRARRVLVLCGPGN--NGGDGLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred HHHHcCcccCCEEEEEECCCC--ccHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 344443333678999995554 2 1245678999999999998876543
No 182
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.04 E-value=1.3e+02 Score=25.30 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=32.9
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
-++++..+|.|=..-...||..|+++|.+|.++.++.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35577778889999999999999999999999998753
No 183
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.96 E-value=1.3e+02 Score=23.46 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=29.2
Q ss_pred ceEEEEeC--CCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 14 VHCLVLSY--PAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 14 ~hv~~~p~--p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
.+++.+.. ++.|=..-...||..|+++|.+|.++=...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 55554443 555788889999999999999998876553
No 184
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.89 E-value=1.1e+02 Score=21.67 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.1
Q ss_pred CccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 23 AQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..|+-..+.+..+.+.++|..|..+|.....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 6788999999999999999999877765443
No 185
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=30.56 E-value=1.4e+02 Score=21.77 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
.....|+++..+|||+|.++.....
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 4567888899999999999887643
No 186
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.13 E-value=49 Score=26.82 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCEEEEEeCcccc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..||++|++.||+|++.+.....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 57899999999999999876554
No 187
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.93 E-value=1.2e+02 Score=21.77 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+....++++.+... +...++.++.|.+.|.+++++...
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 45567888876555 356789999999999999988764
No 188
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=29.91 E-value=1.7e+02 Score=27.09 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEecc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAIS 73 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (234)
.=+..|++.|.+.|++| +.|....+.+.. .+|.+..+.
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L~e------~GI~v~~V~ 52 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLLAE------AGIPVTEVS 52 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHHHH------CCCeeEEee
Confidence 44789999999999987 466667666654 356555553
No 189
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=29.55 E-value=82 Score=20.90 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=19.3
Q ss_pred CccEEEeCCC--CccHHHHHHHcCCCceEe
Q 026707 115 PVDCIVYDSF--LPWALDVAKKFGLVGAAF 142 (234)
Q Consensus 115 ~~d~vI~D~~--~~~~~~vA~~lgiP~v~f 142 (234)
++.-||.+.- ..-+.-+|+++|||.++=
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 4556666653 345789999999999974
No 190
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.44 E-value=1.4e+02 Score=27.82 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCceEeccc
Q 026707 100 RSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVGAAFLTQ 145 (234)
Q Consensus 100 ~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 145 (234)
+..+..++++.+ .++++||.|.. +...|+++|++.+...+.
T Consensus 132 ~e~~~~~~~l~~--~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRA--RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHH--CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 456666776654 46899999984 679999999999988764
No 191
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=29.44 E-value=33 Score=24.01 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.4
Q ss_pred ccCCCEEEEcChhHhh
Q 026707 208 IDKADWVLCNTFYELE 223 (234)
Q Consensus 208 ~~~~~~ilvNTf~eLE 223 (234)
..+||-+++|||-=.|
T Consensus 34 ~e~AD~iiiNTC~V~~ 49 (98)
T PF00919_consen 34 PEEADVIIINTCTVRE 49 (98)
T ss_pred cccCCEEEEEcCCCCc
Confidence 4678999999996433
No 192
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.32 E-value=1.5e+02 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEEe
Q 026707 22 PAQGHINPLLQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vt 48 (234)
...|.-.-+..+++.|+++|+.|..+.
T Consensus 7 G~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 7 GWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp TTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 334566778999999999999887763
No 193
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=29.31 E-value=3.5e+02 Score=23.32 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=34.9
Q ss_pred cHHHHHHHHhhhCCCCCccEEEeCCCCc--cHHHHHHHcCCCceEecccchH
Q 026707 99 PRSLCELVENMNGSGVPVDCIVYDSFLP--WALDVAKKFGLVGAAFLTQSCV 148 (234)
Q Consensus 99 ~~~l~~ll~~l~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~ 148 (234)
.+.-++.++++.+. ..|.+||++.+.. ....+|++.++|.+.....+..
T Consensus 68 ~~~r~~~~~~l~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~~ 118 (308)
T PRK05428 68 EEERKERLKKLFSL-EPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTTR 118 (308)
T ss_pred HHHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHHH
Confidence 34445666666543 5678889998775 3579999999999987654443
No 194
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=29.12 E-value=1.5e+02 Score=23.50 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCC--CccEEEeCCCCccHHHHHHHcCCCceEecc
Q 026707 101 SLCELVENMNGSGV--PVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 101 ~l~~ll~~l~~~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 144 (234)
.++.+++.+.++.. .+.+||+|---.-+...|+++|||.+.+..
T Consensus 13 ~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 13 NLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred hHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 45555655543222 366778886433457899999999887543
No 195
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.11 E-value=1.3e+02 Score=27.33 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=34.7
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.-|+++..+|.|=..-...||+.|.++|++|.+++++...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 3466888899999999999999999999999999987653
No 196
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.69 E-value=1e+02 Score=23.66 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=20.8
Q ss_pred CCccEEEeCCCCcc--HHHHHHHcCCCceEecc
Q 026707 114 VPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 114 ~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~ 144 (234)
.+||+||......- ..+.-++.|||.+.+..
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 36899988654322 33445678999988753
No 197
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=28.27 E-value=1.4e+02 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCccChHHHHHHHHHHHhCCCEEEEE
Q 026707 22 PAQGHINPLLQFAKRLEHKGLKVTLV 47 (234)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~v 47 (234)
++.|-..-.+.|++.|+++|.+|-++
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 55688888999999999999999885
No 198
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=27.98 E-value=1e+02 Score=26.58 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=28.5
Q ss_pred cchhHhhhcCCCceEEEEeCC--CccChHHHHHHHHHHHhCCC
Q 026707 2 ENIEKKAASCKRVHCLVLSYP--AQGHINPLLQFAKRLEHKGL 42 (234)
Q Consensus 2 ~~~~~~~~~~~~~hv~~~p~p--~~GH~~P~l~La~~La~~G~ 42 (234)
++++..+....+.+++.++.+ ..|..+|+-++++...++|.
T Consensus 120 ~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~ 162 (368)
T PRK13479 120 AEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGK 162 (368)
T ss_pred HHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCC
Confidence 345555533344566777777 56999999999888877774
No 199
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.97 E-value=61 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=21.8
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
+|.++. +.|+.- -.++++...|||+||-++-..
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 345554 344432 357888899999999877543
No 200
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=27.85 E-value=1.3e+02 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=29.5
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.+++++. +-.=+.|++.+++.|+++|.+|+++....+.
T Consensus 99 ~~~llIa--GGiGiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVG--GGVGIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEe--CcCcHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 4677776 3334899999999999999999988765444
No 201
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=27.63 E-value=61 Score=22.21 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCcccccccccCCCCCCCCceEEec
Q 026707 30 LLQFAKRLEHKGLKVTLVTTYFISKSLHRDSSSPSTSISLEAI 72 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~~~~~~~~~~~~~~~~~i~~~~l 72 (234)
++++|++|++.|++ ++.|....+.+.. .+|....+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~------~Gi~~~~v 36 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE------HGIEVTEV 36 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH------TT--EEEC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH------cCCCceee
Confidence 57899999999966 6777777766654 35664444
No 202
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=27.57 E-value=1.1e+02 Score=27.67 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.2
Q ss_pred EEeCCCccChHHHHHHHHHHHhCCCEEE
Q 026707 18 VLSYPAQGHINPLLQFAKRLEHKGLKVT 45 (234)
Q Consensus 18 ~~p~p~~GH~~P~l~La~~La~~G~~VT 45 (234)
.-|--+.|-..-.+.|.++|.+||++|.
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 3345566889999999999999999885
No 203
>PLN02939 transferase, transferring glycosyl groups
Probab=27.39 E-value=1.4e+02 Score=30.01 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=30.6
Q ss_pred CCceEEEE-----eCCCccCh-HHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 12 KRVHCLVL-----SYPAQGHI-NPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 12 ~~~hv~~~-----p~p~~GH~-~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
...||+++ |+.-.|-+ .-+-.|.++|++.||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45688876 44444555 557789999999999999999864
No 204
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.12 E-value=82 Score=26.37 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=28.9
Q ss_pred hcCCCceEEEEeCCCccChHHHHHHHHHHHhC
Q 026707 9 ASCKRVHCLVLSYPAQGHINPLLQFAKRLEHK 40 (234)
Q Consensus 9 ~~~~~~hv~~~p~p~~GH~~P~l~La~~La~~ 40 (234)
.+...+|+++--.||.|-....+-||++|.-.
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 56678999999999999999999999999864
No 205
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=27.07 E-value=61 Score=24.51 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCEEEEEeCcc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~ 51 (234)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999999874
No 206
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.89 E-value=77 Score=25.51 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=30.7
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
.+|++- ..|.....=...+.++|.+.|++|+++.|....+.+
T Consensus 4 krIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 455433 335555567889999999999999999998765543
No 207
>PRK13604 luxD acyl transferase; Provisional
Probab=26.84 E-value=1.7e+02 Score=25.19 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=23.8
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEE
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLV 47 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~v 47 (234)
..+++.....++-.-+.++|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344454444466666999999999999987543
No 208
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.78 E-value=1.7e+02 Score=18.87 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEe
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (234)
+++...++.|=-.-...|++.|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344555677888889999999999999998776
No 209
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.77 E-value=1.3e+02 Score=25.61 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhCC--CCCccEEEeCCCCccHHHHHHHcCCCceEec
Q 026707 100 RSLCELVENMNGS--GVPVDCIVYDSFLPWALDVAKKFGLVGAAFL 143 (234)
Q Consensus 100 ~~l~~ll~~l~~~--~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 143 (234)
..|++++...... ...+.+||+|- .-+..+|+++|||.+.+.
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 4578888765432 13577888984 346677999999999864
No 210
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.76 E-value=90 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=29.0
Q ss_pred EeCCCccCh-HHHHHHHHHHHhC--CCEEEEEeCccccccc
Q 026707 19 LSYPAQGHI-NPLLQFAKRLEHK--GLKVTLVTTYFISKSL 56 (234)
Q Consensus 19 ~p~p~~GH~-~P~l~La~~La~~--G~~VT~vt~~~~~~~~ 56 (234)
+-..|.|+. .=..+|.++|.++ |++|.++.|+...+.+
T Consensus 4 ~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 4 WGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred EEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 334465666 4688999999998 9999999998665544
No 211
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=26.75 E-value=69 Score=23.67 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCEEEEEeCcc
Q 026707 32 QFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 32 ~La~~La~~G~~VT~vt~~~ 51 (234)
-+|.+|++.|++|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999887
No 212
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=26.40 E-value=1.2e+02 Score=24.54 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~ 49 (234)
+.+.+|.+=..||.|-..-|++=|+.|.++|.+|.+-..
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~v 41 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYV 41 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 567788888999999999999999999999999886444
No 213
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.37 E-value=2.1e+02 Score=22.63 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=25.3
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
|+|+..++.-|--=+...+++|++.|.+|.++.-.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 66777776766655667888888888887776654
No 214
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=26.01 E-value=1.1e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=24.4
Q ss_pred CccEE-EeCCCC-ccHHHHHHHcCCCceEecccc
Q 026707 115 PVDCI-VYDSFL-PWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 115 ~~d~v-I~D~~~-~~~~~vA~~lgiP~v~f~~~~ 146 (234)
.||+| |.|.-. ..+..=|.++|||.|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 47755 667765 467899999999999987543
No 215
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.99 E-value=76 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCEEEEEeCccc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~~ 52 (234)
..+++.|.++||+|+.++-...
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGG
T ss_pred HHHHHHHHHCCCEEEEEecCch
Confidence 4588999999999999886543
No 216
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=25.86 E-value=5e+02 Score=23.48 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=60.0
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhC--CCEEEEEe-CcccccccccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHHH
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVT-TYFISKSLHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYLE 92 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~--G~~VT~vt-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (234)
.+-+=-.+.|=.+-...|.++|.++ ++.|++.| |+.-.+.+... -...+....+|-++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~---~~~~v~h~YlP~D~---------------- 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL---FGDSVIHQYLPLDL---------------- 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH---cCCCeEEEecCcCc----------------
Confidence 5555556779999999999999998 77777766 33333333221 11234555554222
Q ss_pred HHHHhCcHHHHHHHHhhhCCCCCcc-EEEeCCCC-ccHHHHHHHcCCCceEecc
Q 026707 93 RFWQIGPRSLCELVENMNGSGVPVD-CIVYDSFL-PWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 93 ~~~~~~~~~l~~ll~~l~~~~~~~d-~vI~D~~~-~~~~~vA~~lgiP~v~f~~ 144 (234)
...++..++.+ +|| +||++.=+ +-...-+++.|+|.+....
T Consensus 112 ------~~~v~rFl~~~-----~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 112 ------PIAVRRFLRKW-----RPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred ------hHHHHHHHHhc-----CCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 11234444443 455 56666532 3356888899999999765
No 217
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.84 E-value=1.4e+02 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=34.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
-|+++-.+|.|=..-...||..|..+|.+|.+++++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 355777789999999999999999999999999997654
No 218
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.55 E-value=3.3e+02 Score=22.67 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.6
Q ss_pred cHHHHHHHHhhhCCCCCccEEEeCCCCc---cHHHHHHHcCCCceE
Q 026707 99 PRSLCELVENMNGSGVPVDCIVYDSFLP---WALDVAKKFGLVGAA 141 (234)
Q Consensus 99 ~~~l~~ll~~l~~~~~~~d~vI~D~~~~---~~~~vA~~lgiP~v~ 141 (234)
.+.++.+++++.+ -++.+.|.-.. -+..+|++.|||.+.
T Consensus 137 ~~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 4567778887742 36778887553 246999999999986
No 219
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=25.28 E-value=2.9e+02 Score=21.55 Aligned_cols=65 Identities=29% Similarity=0.448 Sum_probs=28.2
Q ss_pred CCceEEeccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHhhhC--CCCCccEEEeCCCCccH---HHHHHHcC
Q 026707 65 TSISLEAISDGYDEGGSAQTEGVEAYLERFWQIGPRSLCELVENMNG--SGVPVDCIVYDSFLPWA---LDVAKKFG 136 (234)
Q Consensus 65 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~~~~~d~vI~D~~~~~~---~~vA~~lg 136 (234)
+.|-+.++.||= ..+ ..+..+.....+.+.+.++|++-.+ .+.++.|||+|....-. ...|++|.
T Consensus 4 pkIGIrp~iDGR-~~g------VresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~ 73 (171)
T PF07881_consen 4 PKIGIRPTIDGR-RGG------VRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFK 73 (171)
T ss_dssp -EEEEEEB-----TTT------HHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHH
T ss_pred CeEEEEEeecCC-chh------HHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHH
Confidence 445666666653 211 2222222222344566677765322 34678999999977543 46666664
No 220
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.22 E-value=1e+02 Score=26.07 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=37.0
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhC--CCEEEEEeCcccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLH 57 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~--G~~VT~vt~~~~~~~~~ 57 (234)
+|+++-+.+.|-+.-...+.+.|.++ +.+||+++.+.+...+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 57888888889999999999999986 89999999987765553
No 221
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.20 E-value=79 Score=23.14 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 026707 29 PLLQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 29 P~l~La~~La~~G~~VT~vt~ 49 (234)
-++..|++|+++|+.|+..-.
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEec
Confidence 367899999999988876533
No 222
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.19 E-value=1.4e+02 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.4
Q ss_pred CceEEEEeCCCc--cChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 13 RVHCLVLSYPAQ--GHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 13 ~~hv~~~p~p~~--GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
.++|+++.-|+- |-.+ -.||+|+..|+.++++...
T Consensus 266 ~P~V~Ilcgpgnnggdg~---v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 266 WPLVAILCGPGNNGGDGL---VCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CceEEEEeCCCCccchhH---HHHHHHHHcCceeEEEeec
Confidence 467999998876 3332 2999999999999887765
No 223
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.10 E-value=70 Score=29.33 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCceEEEEeCCCccChHHH------------HHHHHHHHhCCCEEEEEeCcc
Q 026707 12 KRVHCLVLSYPAQGHINPL------------LQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~------------l~La~~La~~G~~VT~vt~~~ 51 (234)
+..+|++..-|..--+.|. ..||++++.+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3458998888888888886 468899999999999999764
No 224
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.00 E-value=34 Score=27.35 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=12.9
Q ss_pred CcchhHhhhcCCCceEEEE
Q 026707 1 MENIEKKAASCKRVHCLVL 19 (234)
Q Consensus 1 ~~~~~~~~~~~~~~hv~~~ 19 (234)
|||||+.+++..+..+++=
T Consensus 142 ~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 142 MENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHhccCeEEeeec
Confidence 6777777766666666654
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=24.95 E-value=1.2e+02 Score=23.67 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSLH 57 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~~ 57 (234)
+...++++-.+|.|=..=...+++++..+|+.|.|++.......+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 3457889999999888888999999999999999999886665554
No 226
>PRK12404 stage V sporulation protein AD; Provisional
Probab=24.87 E-value=1.8e+02 Score=25.41 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhCCCCCccEEEe-CCC--CccHHHHHHHcCCCceEecccc
Q 026707 100 RSLCELVENMNGSGVPVDCIVY-DSF--LPWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 100 ~~l~~ll~~l~~~~~~~d~vI~-D~~--~~~~~~vA~~lgiP~v~f~~~~ 146 (234)
+..+..|++-.-+...+|.++. |.. ...+..+++++|||.+-+...+
T Consensus 60 EA~~~AL~kAGI~~~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gAC 109 (334)
T PRK12404 60 EACSRAIEKAKLRKEDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGAC 109 (334)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEecCCCcCcHHHHHHHhCCCccceeecC
Confidence 3455555442111134777776 544 2345589999999997665543
No 227
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=24.77 E-value=2.1e+02 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=32.4
Q ss_pred EEEeC-CCccChHHHHHHHHHHHhCCCEEEEEeCcccccc
Q 026707 17 LVLSY-PAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKS 55 (234)
Q Consensus 17 ~~~p~-p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~ 55 (234)
.+... .|.|=..-.+-||..|+++|-+|+++=+++++..
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 33333 5669999999999999999999999999888754
No 228
>PLN02316 synthase/transferase
Probab=24.73 E-value=74 Score=32.18 Aligned_cols=41 Identities=10% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCceEEEEeC---C--CccChH-HHHHHHHHHHhCCCEEEEEeCccc
Q 026707 12 KRVHCLVLSY---P--AQGHIN-PLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 12 ~~~hv~~~p~---p--~~GH~~-P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
...||+++.. | -.|-+. -+..|+++|+++||+|.++++...
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 3468887652 2 235553 457999999999999999999643
No 229
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.72 E-value=80 Score=26.57 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCc
Q 026707 30 LLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 30 ~l~La~~La~~G~~VT~vt~~ 50 (234)
-..+|+.||++|++|.++.=.
T Consensus 19 G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 19 GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCc
Confidence 368999999999999887643
No 230
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=24.54 E-value=41 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 28 NPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.---+|...|..+|+.||=.|.....
T Consensus 20 ~sQ~eL~~~L~~~Gi~vTQaTiSRDL 45 (70)
T PF01316_consen 20 SSQEELVELLEEEGIEVTQATISRDL 45 (70)
T ss_dssp -SHHHHHHHHHHTT-T--HHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCcchhHHHHHH
Confidence 34568999999999998866654433
No 231
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.41 E-value=1.2e+02 Score=28.10 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=21.9
Q ss_pred CCccEEEeCCCCccHHHHHHHcCCCceEec
Q 026707 114 VPVDCIVYDSFLPWALDVAKKFGLVGAAFL 143 (234)
Q Consensus 114 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 143 (234)
.+||+||.+. |...+|+++|||.+.+.
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3689999887 56778999999997654
No 232
>PRK05973 replicative DNA helicase; Provisional
Probab=24.35 E-value=1.4e+02 Score=24.69 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.9
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
=+++.--||.|=..-.++++...+.+|..|.|++.+...+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 356777899999999999999999999999999988765554
No 233
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=24.26 E-value=1.3e+02 Score=25.67 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=30.3
Q ss_pred eEEEEeC-CCccChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 026707 15 HCLVLSY-PAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (234)
Q Consensus 15 hv~~~p~-p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~ 54 (234)
++++|.- .|.|=..--..+|-++|++|.+|-+++++..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 3444443 455888888899999999999999999987664
No 234
>PLN02828 formyltetrahydrofolate deformylase
Probab=24.17 E-value=1.7e+02 Score=24.67 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhCCC--CCccEEEeCCC---CccHHHHHHHcCCCceEecc
Q 026707 100 RSLCELVENMNGSG--VPVDCIVYDSF---LPWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 100 ~~l~~ll~~l~~~~--~~~d~vI~D~~---~~~~~~vA~~lgiP~v~f~~ 144 (234)
..|++++.+..... ..+.+||++-- -.-+...|+++|||.+.+..
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 46778887764321 24678899862 22467899999999987644
No 235
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=23.97 E-value=1.2e+02 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=26.5
Q ss_pred CccChHH-HHHHHHHHHh-CCCEEEEEeCcccccc
Q 026707 23 AQGHINP-LLQFAKRLEH-KGLKVTLVTTYFISKS 55 (234)
Q Consensus 23 ~~GH~~P-~l~La~~La~-~G~~VT~vt~~~~~~~ 55 (234)
|.||... ..++.+.|.+ +|++|.++.|+...+.
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~v 42 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQV 42 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHH
Confidence 5588866 8899999984 6999999999866543
No 236
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=23.93 E-value=1.6e+02 Score=25.44 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=28.6
Q ss_pred chhHhhhcCCCceEE--EEeCCCc--cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 3 NIEKKAASCKRVHCL--VLSYPAQ--GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 3 ~~~~~~~~~~~~hv~--~~p~p~~--GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
.|+..+...++..+. +=|..-. ||+.|+.. .+.|.+.|+++.|+..+.
T Consensus 20 el~~~l~~~~~~~v~~G~~PTG~lHLG~~~~~~~-~~~lq~~g~~~~i~IaD~ 71 (329)
T PRK08560 20 ELRELLESKEEPKAYIGFEPSGKIHLGHLLTMNK-LADLQKAGFKVTVLLADW 71 (329)
T ss_pred HHHHHHhCCCCCEEEEccCCCCcchhhhhHHHHH-HHHHHHCCCeEEEEEccc
Confidence 344455323344443 3343222 89998888 555666799998887753
No 237
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.86 E-value=90 Score=25.17 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=29.2
Q ss_pred cHHHHHHHHhhhCCCCCccEEEeCCCCccHHHHHHHcCCCc
Q 026707 99 PRSLCELVENMNGSGVPVDCIVYDSFLPWALDVAKKFGLVG 139 (234)
Q Consensus 99 ~~~l~~ll~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~ 139 (234)
.+.+++++..|.+.+.. -.+|+-.|-..+..||.+||||.
T Consensus 90 T~Gi~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCCHHHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCcH
Confidence 45567777766543322 36778888888899999999998
No 238
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.82 E-value=2.3e+02 Score=22.61 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEE
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLV 47 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~v 47 (234)
.+.-|.++.-++.|=....+.+|-+.+.+|.+|.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 456788999999999999999999999999998875
No 239
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=23.68 E-value=82 Score=25.62 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCEEEEEe
Q 026707 31 LQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt 48 (234)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 578999999999999875
No 240
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=23.62 E-value=1.5e+02 Score=20.21 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHh--CCCEEEEEeCcccccc
Q 026707 27 INPLLQFAKRLEH--KGLKVTLVTTYFISKS 55 (234)
Q Consensus 27 ~~P~l~La~~La~--~G~~VT~vt~~~~~~~ 55 (234)
+.||+.+.+.+.+ .+.+|+++-...+.+.
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~ 38 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTPED 38 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEccccc
Confidence 7899999999994 5689998876655443
No 241
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.45 E-value=2.2e+02 Score=22.77 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeC
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~ 49 (234)
+..++++.- +.|.+ -..+++.|+++|++|+.+.-
T Consensus 10 ~~~~vlItG--a~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 10 DGLRVLVTG--GASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCCEEEEeC--CCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 344555543 44555 47889999999999877764
No 242
>PRK14098 glycogen synthase; Provisional
Probab=23.40 E-value=81 Score=28.87 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=30.1
Q ss_pred cCCCceEEEEe-----CCCc-cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 10 SCKRVHCLVLS-----YPAQ-GHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 10 ~~~~~hv~~~p-----~p~~-GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
+++..+|+++. |.=. |=-.-+-.|.++|+++||+|.++.+..
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34557777654 3222 333667889999999999999999853
No 243
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=23.40 E-value=26 Score=20.89 Aligned_cols=10 Identities=50% Similarity=1.384 Sum_probs=7.9
Q ss_pred CCCccChHHH
Q 026707 21 YPAQGHINPL 30 (234)
Q Consensus 21 ~p~~GH~~P~ 30 (234)
|||-||+.|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 4799999874
No 244
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=23.29 E-value=1e+02 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 27 INPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 27 ~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
+-+++.+.+.|.++|+.|-|+|.-..
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 34689999999999999999988653
No 245
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=23.29 E-value=1.2e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=26.9
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
+.+.+|+++-..+.| .-+|.+|++.||+||++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 445678888655555 457788999999999998654
No 246
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.08 E-value=1.4e+02 Score=24.61 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=31.2
Q ss_pred EEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 17 LVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 17 ~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
++..-+|.|-......+|..++++|.+|-++.++..+
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 3444577899999999999999999999999987653
No 247
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.03 E-value=2.2e+02 Score=22.34 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=44.4
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhC--CCEEEEEeCcccccc-cccCCCCCCCCceEEeccCCCCCCCCCCccCHHHHH
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKS-LHRDSSSPSTSISLEAISDGYDEGGSAQTEGVEAYL 91 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~--G~~VT~vt~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 91 (234)
.++-+=..+.|=++-...|+++|.++ |++|.+-++...... ..+. -.+.+....+|-+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~---~~~~v~~~~~P~D~--------------- 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL---LPDRVDVQYLPLDF--------------- 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----GGG-SEEE---SS---------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh---CCCCeEEEEeCccC---------------
Confidence 44444456679999999999999986 888777665433222 2110 00122333333111
Q ss_pred HHHHHhCcHHHHHHHHhhhCCCCCccE-EEeCCCCcc--HHHHHHHcCCCceEecc
Q 026707 92 ERFWQIGPRSLCELVENMNGSGVPVDC-IVYDSFLPW--ALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 92 ~~~~~~~~~~l~~ll~~l~~~~~~~d~-vI~D~~~~~--~~~vA~~lgiP~v~f~~ 144 (234)
....+..++.+ +|++ |+.+. -.| ....|++.|||.+.+..
T Consensus 84 -------~~~~~rfl~~~-----~P~~~i~~Et-ElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -------PWAVRRFLDHW-----RPDLLIWVET-ELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------HHHHHHHHHHH-------SEEEEES-----HHHHHH-----S-EEEEEE
T ss_pred -------HHHHHHHHHHh-----CCCEEEEEcc-ccCHHHHHHHhhcCCCEEEEee
Confidence 11234455544 2454 45554 344 46888889999999754
No 248
>PRK14974 cell division protein FtsY; Provisional
Probab=22.96 E-value=2e+02 Score=25.09 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=33.9
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
.-|+++-.+|.|=..-...||..|..+|++|.++++...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 356688889999999999999999999999999887644
No 249
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.95 E-value=84 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCEEEEEeC
Q 026707 31 LQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~ 49 (234)
-..|++||+||++|.+++-
T Consensus 63 KayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 4789999999999777764
No 250
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.89 E-value=69 Score=26.56 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCEEEEEeCccccccc
Q 026707 32 QFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 32 ~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
-+|..|++.||+||++......+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i 29 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL 29 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH
Confidence 4788899999999999876333333
No 251
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=22.83 E-value=1.9e+02 Score=22.18 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEE
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTL 46 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~ 46 (234)
-|.++.-++.|=....+.+|-+.+.+|.+|.|
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46678888999999999999999999999987
No 252
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.82 E-value=96 Score=23.62 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=23.1
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
..+|+++ |-|.+ -...++.|.+.|++||++++.
T Consensus 13 ~~~vlVv---GGG~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVII---GGGKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEE---CCCHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 3455555 33433 377899999999999999643
No 253
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.59 E-value=1.4e+02 Score=27.54 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=21.7
Q ss_pred CCccEEEeCCCCccHHHHHHHcCCCceEe
Q 026707 114 VPVDCIVYDSFLPWALDVAKKFGLVGAAF 142 (234)
Q Consensus 114 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 142 (234)
.+||+||.+. +...+|+++|||.+.+
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 3689999887 5778899999999866
No 254
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.57 E-value=79 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCEEEEEeCcc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~ 51 (234)
..+|+.|++.||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999886654
No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=22.38 E-value=1.5e+02 Score=25.46 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=35.7
Q ss_pred CceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 13 RVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
...+++.--+|.|=..=+..+|+.|+.+|..|+|++.+.....+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 34688888888888888899999999999999999887544433
No 256
>PRK10867 signal recognition particle protein; Provisional
Probab=22.36 E-value=1.5e+02 Score=26.84 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=34.7
Q ss_pred ce-EEEEeCCCccChHHHHHHHHHHHhC-CCEEEEEeCccccc
Q 026707 14 VH-CLVLSYPAQGHINPLLQFAKRLEHK-GLKVTLVTTYFISK 54 (234)
Q Consensus 14 ~h-v~~~p~p~~GH~~P~l~La~~La~~-G~~VT~vt~~~~~~ 54 (234)
++ |+++-.+|.|=..-...||..|+.+ |.+|.+++.+....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 44 5577778889999999999999998 99999999986554
No 257
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.30 E-value=2.4e+02 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=30.3
Q ss_pred CceEEEEe--CCCccChHHHHHHHHHHHh-CCCEEEEEeCccc
Q 026707 13 RVHCLVLS--YPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFI 52 (234)
Q Consensus 13 ~~hv~~~p--~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~ 52 (234)
+.+++.+. -+|.|=-.-...||..|+. +|.+|-++-....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 44555444 3677888889999999997 6999998866543
No 258
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=22.23 E-value=1.3e+02 Score=25.93 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=55.0
Q ss_pred eCCCccChHHHHHHHHHHHhC-CCEEEEEeCcccccccccCCCCCCCCceE-EeccCCCCCCCCCCccCHHHHHHHHHHh
Q 026707 20 SYPAQGHINPLLQFAKRLEHK-GLKVTLVTTYFISKSLHRDSSSPSTSISL-EAISDGYDEGGSAQTEGVEAYLERFWQI 97 (234)
Q Consensus 20 p~p~~GH~~P~l~La~~La~~-G~~VT~vt~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (234)
-...+.|+.=+..+.++|.++ ++++.++.|.......... ... -+|.. +.+ .+...+ .+........
T Consensus 6 ~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~-~~~-~~i~~~~~~--~~~~~~----~~~~~~~~~~--- 74 (365)
T TIGR00236 6 VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQV-LDL-FHLPPDYDL--NIMSPG----QTLGEITSNM--- 74 (365)
T ss_pred EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHH-HHh-cCCCCCeee--ecCCCC----CCHHHHHHHH---
Confidence 345678888899999999886 6777776665333211100 000 11211 011 110001 1121111111
Q ss_pred CcHHHHHHHHhhhCCCCCccEEEeC--CCCc-cHHHHHHHcCCCceEe
Q 026707 98 GPRSLCELVENMNGSGVPVDCIVYD--SFLP-WALDVAKKFGLVGAAF 142 (234)
Q Consensus 98 ~~~~l~~ll~~l~~~~~~~d~vI~D--~~~~-~~~~vA~~lgiP~v~f 142 (234)
...+.+.+++ .+||+|++- .... ++..+|..+|||.+..
T Consensus 75 -~~~l~~~l~~-----~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 75 -LEGLEELLLE-----EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred -HHHHHHHHHH-----cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 1345555554 357988774 4443 3578889999999864
No 259
>PLN00016 RNA-binding protein; Provisional
Probab=22.15 E-value=1.3e+02 Score=26.13 Aligned_cols=38 Identities=29% Similarity=0.258 Sum_probs=24.6
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYF 51 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~ 51 (234)
.+|+++..-+-|+=.--.+|++.|+++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 45777622222222234678899999999999887643
No 260
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=22.14 E-value=81 Score=26.53 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
||+.| +...+.|.+.||++.++...
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEec
Confidence 99999 66777888889998876653
No 261
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=22.12 E-value=83 Score=26.24 Aligned_cols=29 Identities=10% Similarity=-0.117 Sum_probs=23.5
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
|--.=+.+|++.|+++|+.|++++.....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 44 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGAP 44 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 44455899999999999999999886543
No 262
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=22.09 E-value=1e+02 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=20.7
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 25 GHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
||+.|++ ..+.|.+.|+++.++...
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D 41 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGD 41 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 9999986 677777889999887775
No 263
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=22.01 E-value=1.4e+02 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=27.3
Q ss_pred ceEE-EEeCCCc-cChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 14 VHCL-VLSYPAQ-GHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 14 ~hv~-~~p~p~~-GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
++|+ +++.... |--.-++.|++.|.++|+++++++..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~ 40 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALT 40 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcC
Confidence 3444 4555554 55588999999999999999888753
No 264
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=21.91 E-value=1.3e+02 Score=25.88 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=39.6
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhC--CCEEEEEeCcccccccc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLH 57 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~--G~~VT~vt~~~~~~~~~ 57 (234)
....+|+++-.-+.|-+.-...+.+.|.++ +.+||+++.+.+...+.
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 51 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS 51 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc
Confidence 345689999999999999999999999986 89999999987765443
No 265
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=21.89 E-value=2.2e+02 Score=22.67 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCC--CCccEEEeCCCCccHHHHHHHcCCCceEecc
Q 026707 101 SLCELVENMNGSG--VPVDCIVYDSFLPWALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 101 ~l~~ll~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 144 (234)
.++.+++.+.+.. ..+.+||+|--..-+...|++.|||.+.+..
T Consensus 14 ~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 14 NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECc
Confidence 4556666554322 2355667885333467899999999987653
No 266
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=21.81 E-value=1.1e+02 Score=24.20 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=30.3
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHh-CCCEEEEEeCcccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEH-KGLKVTLVTTYFISKSLH 57 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~-~G~~VT~vt~~~~~~~~~ 57 (234)
+|++--..+.| ..=..+|.++|.+ .|++|+++.|+...+.+.
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 45544444444 5558899999998 599999999987765553
No 267
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=21.74 E-value=2.2e+02 Score=22.32 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=21.9
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEE
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTL 46 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~ 46 (234)
+-|+++ .-..|-..-+..+|++|+++|+.|.+
T Consensus 15 ~~Vvv~-~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 15 PAVVVI-HDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEE-cCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 344444 45668878888999999999966654
No 268
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=21.64 E-value=2e+02 Score=21.80 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=28.9
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+.++-+.+.|=..-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34667778888888899999999999999888654
No 269
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.64 E-value=2.3e+02 Score=18.47 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEe
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVT 48 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (234)
+|++++. ..++..-.+.+++.|.+.|++|.+-.
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4666664 46777888999999999999987743
No 270
>PRK14012 cysteine desulfurase; Provisional
Probab=21.58 E-value=1.8e+02 Score=25.61 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred cchhHhhhcCCCceEEEEeCCC--ccChHHHHHHHHHHHhCCCEEE
Q 026707 2 ENIEKKAASCKRVHCLVLSYPA--QGHINPLLQFAKRLEHKGLKVT 45 (234)
Q Consensus 2 ~~~~~~~~~~~~~hv~~~p~p~--~GH~~P~l~La~~La~~G~~VT 45 (234)
++||..+ ..+.++++++.+. .|.+.|+-++++...++|..|.
T Consensus 135 ~~l~~~i--~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vi 178 (404)
T PRK14012 135 EKLEAAM--RDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFH 178 (404)
T ss_pred HHHHHhc--CCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEE
Confidence 3566666 3345677777665 5999999999888777875543
No 271
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=21.55 E-value=1.8e+02 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=26.9
Q ss_pred CceEEEEeCCCccChHH-------HHHHHHHHHhCCC-EEEEEeCccccc
Q 026707 13 RVHCLVLSYPAQGHINP-------LLQFAKRLEHKGL-KVTLVTTYFISK 54 (234)
Q Consensus 13 ~~hv~~~p~p~~GH~~P-------~l~La~~La~~G~-~VT~vt~~~~~~ 54 (234)
+.||+++|.-...--.. +...++.|.+.|+ +|.|+|++..-+
T Consensus 49 KGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 49 KGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred CceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcccc
Confidence 67899888654422222 3455678888896 488888875543
No 272
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=21.40 E-value=2.8e+02 Score=21.77 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=31.9
Q ss_pred CCCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccc
Q 026707 11 CKRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 11 ~~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~ 52 (234)
+...-.++.-.||.|-..-+..+.+.+..+|.+|.++++...
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~ 57 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK 57 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH
Confidence 334445567889999999999999999999999988887643
No 273
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=21.21 E-value=2.5e+02 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=24.3
Q ss_pred EEEeCCCccChHHHHHHHHHHHhC-C--CEEEEEeC
Q 026707 17 LVLSYPAQGHINPLLQFAKRLEHK-G--LKVTLVTT 49 (234)
Q Consensus 17 ~~~p~p~~GH~~P~l~La~~La~~-G--~~VT~vt~ 49 (234)
++-..-|.||...-..|.+.|.++ | .+|+++-.
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~ 38 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDL 38 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEeh
Confidence 355567889999999999999864 4 45666533
No 274
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=21.18 E-value=1.7e+02 Score=23.92 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=22.6
Q ss_pred CCccEEEeCCCCcc--HHHHHHHcCCCceEeccc
Q 026707 114 VPVDCIVYDSFLPW--ALDVAKKFGLVGAAFLTQ 145 (234)
Q Consensus 114 ~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 145 (234)
.++.||+++....- +..+|++.|+|.+.+.+.
T Consensus 198 ~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 198 NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 46889999887653 468899999999887665
No 275
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=21.16 E-value=1e+02 Score=25.58 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=25.8
Q ss_pred ceEEEEeCCCccCh-HHHHHHHHHHHhCCCEEEEEeC
Q 026707 14 VHCLVLSYPAQGHI-NPLLQFAKRLEHKGLKVTLVTT 49 (234)
Q Consensus 14 ~hv~~~p~p~~GH~-~P~l~La~~La~~G~~VT~vt~ 49 (234)
.+|+++.-++- = -=-+.+||.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEEc
Confidence 57888885554 2 1246789999999999999873
No 276
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.15 E-value=1.6e+02 Score=27.20 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCccEEEeCCCCccHHHHHHHcCCCceEe
Q 026707 114 VPVDCIVYDSFLPWALDVAKKFGLVGAAF 142 (234)
Q Consensus 114 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 142 (234)
.+||+||.+. +...+|+++|||.+.+
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 3689999776 4678999999999865
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.04 E-value=1.9e+02 Score=21.92 Aligned_cols=41 Identities=24% Similarity=0.123 Sum_probs=34.5
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
+++.--||.|=..-.++++...+..|..|.+++++...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 46677789999999999999999999999999997665544
No 278
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=20.99 E-value=2.1e+02 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=19.6
Q ss_pred CCccEEEeCCCCc--cHHHHHHHcCCCceEecc
Q 026707 114 VPVDCIVYDSFLP--WALDVAKKFGLVGAAFLT 144 (234)
Q Consensus 114 ~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 144 (234)
.++.||+++.... .+..+|++.|++.+.+.+
T Consensus 219 ~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 219 SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 3567777777654 345677777777665543
No 279
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.97 E-value=1.8e+02 Score=24.07 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCEEEEEeCccc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYFI 52 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~~ 52 (234)
..|++.|.++|+ |++-++...
T Consensus 13 r~la~~L~~~g~-v~~sv~t~~ 33 (249)
T PF02571_consen 13 RKLAERLAEAGY-VIVSVATSY 33 (249)
T ss_pred HHHHHHHHhcCC-EEEEEEhhh
Confidence 578999999998 654433333
No 280
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.93 E-value=1.7e+02 Score=26.11 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=24.1
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
.+++++ |-|+ .-+ .+|+.|+++|++||++...
T Consensus 6 k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCC
Confidence 445444 5666 444 9999999999999988764
No 281
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=20.92 E-value=2e+02 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=29.9
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISKSL 56 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~~~ 56 (234)
...||+++=+... ..+.|.|++||++||++-.....+.+
T Consensus 178 ~~~~Vv~iD~GvK------~nIlr~L~~rg~~vtVVP~~t~~eeI 216 (368)
T COG0505 178 PGKHVVVIDFGVK------RNILRELVKRGCRVTVVPADTSAEEI 216 (368)
T ss_pred CCcEEEEEEcCcc------HHHHHHHHHCCCeEEEEcCCCCHHHH
Confidence 4568888888776 35678999999999998766555544
No 282
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=20.90 E-value=99 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCEEEEEeCcccc
Q 026707 31 LQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~~~~ 53 (234)
.+|..+|...||+||++|-....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcc
Confidence 46778888899999999875443
No 283
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.88 E-value=1.3e+02 Score=24.81 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=36.2
Q ss_pred eEEEEeCCCccChHHHHHHHHHHHhC--CCEEEEEeCcccccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLEHK--GLKVTLVTTYFISKSLH 57 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La~~--G~~VT~vt~~~~~~~~~ 57 (234)
+|+++-..+.|-+.-+..+.+.|.++ +.+||+++.+.+...+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 57888888899999999999999986 48999999987665443
No 284
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.88 E-value=1.2e+02 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 026707 31 LQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 31 l~La~~La~~G~~VT~vt~~ 50 (234)
..+|+.|+++||+|++....
T Consensus 14 ~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp HHHHHHHHHTTTEEEEEESS
T ss_pred HHHHHHHHhcCCeEEeeccc
Confidence 57899999999999988643
No 285
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=20.79 E-value=81 Score=20.58 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.2
Q ss_pred EcChhHhhHHHHHhhhcCC
Q 026707 216 CNTFYELEKELNGWVNIGH 234 (234)
Q Consensus 216 vNTf~eLE~~~~~~l~~g~ 234 (234)
=||.+|||.-..++++.|.
T Consensus 15 g~s~eel~~~I~daIqsgE 33 (68)
T PRK02955 15 GNSKEELEGTIVDAIQSGE 33 (68)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 3899999999999998763
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=20.61 E-value=3.2e+02 Score=23.76 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCce-EEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 026707 12 KRVH-CLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFISK 54 (234)
Q Consensus 12 ~~~h-v~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~~ 54 (234)
++++ |.+.-.||.|=-.-.-.|++.|..+|++|.+++.+....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3444 558888999999999999999999999999999876543
No 287
>PRK04148 hypothetical protein; Provisional
Probab=20.59 E-value=1.1e+02 Score=22.90 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 12 KRVHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 12 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
+..+++.+-.. .| ..+|+.|++.|++|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 34567777654 33 35688889999999876543
No 288
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=20.57 E-value=1.3e+02 Score=24.88 Aligned_cols=38 Identities=37% Similarity=0.456 Sum_probs=29.4
Q ss_pred EEEEeCCCccChHHHHHHHHHHHhCC--CEEEEEeCcccccc
Q 026707 16 CLVLSYPAQGHINPLLQFAKRLEHKG--LKVTLVTTYFISKS 55 (234)
Q Consensus 16 v~~~p~p~~GH~~P~l~La~~La~~G--~~VT~vt~~~~~~~ 55 (234)
|+++. +--=+.|+.++++++.++| .+||++......+.
T Consensus 110 vllia--gGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~d 149 (252)
T COG0543 110 VLLIA--GGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKD 149 (252)
T ss_pred EEEEe--cccCHhHHHHHHHHHHhcCCCceEEEEEeccChhh
Confidence 66665 3434689999999999999 99999987655544
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.48 E-value=2.3e+02 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.8
Q ss_pred ceEEEEeCCCccChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 026707 14 VHCLVLSYPAQGHINPLLQFAKRLEHKGLKVTLVTTYFIS 53 (234)
Q Consensus 14 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~~~~ 53 (234)
..|+++-..|.|=..-+..||..|..+|.+|.+++++...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4567888888999999999999999999999999987554
No 290
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.43 E-value=86 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.0
Q ss_pred EeCCCccChHHHHHHHHHHHhCCCEEEEEeCc
Q 026707 19 LSYPAQGHINPLLQFAKRLEHKGLKVTLVTTY 50 (234)
Q Consensus 19 ~p~p~~GH~~P~l~La~~La~~G~~VT~vt~~ 50 (234)
.-+||+|+++=-.+|++++.+.| |+|+-+.
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~~g--i~fiGp~ 106 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACEDAG--IIFIGPS 106 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred ccccccchhHHHHHHHHHHHHCC--CEEECcC
Confidence 34679999999999999999887 4565543
No 291
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.04 E-value=1.6e+02 Score=23.79 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=20.9
Q ss_pred CccEEEeCCCCcc--HH-HHHHHcCCCceEeccc
Q 026707 115 PVDCIVYDSFLPW--AL-DVAKKFGLVGAAFLTQ 145 (234)
Q Consensus 115 ~~d~vI~D~~~~~--~~-~vA~~lgiP~v~f~~~ 145 (234)
+||+||....... .. .+.+.+|||++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 6899998755433 23 3444589999988654
No 292
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=20.03 E-value=1.9e+02 Score=26.12 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=33.7
Q ss_pred eEEEEeCCCccChHHHHHHHHHHH-hCCCEEEEEeCccccc
Q 026707 15 HCLVLSYPAQGHINPLLQFAKRLE-HKGLKVTLVTTYFISK 54 (234)
Q Consensus 15 hv~~~p~p~~GH~~P~l~La~~La-~~G~~VT~vt~~~~~~ 54 (234)
-++++..+|.|=..-...||..|. ++|.+|.+++.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 355778888899999999999997 5899999999986543
No 293
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=20.01 E-value=1.2e+02 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=23.8
Q ss_pred CccEEEeCCCC--ccHHHHHHHcCCCceEecccc
Q 026707 115 PVDCIVYDSFL--PWALDVAKKFGLVGAAFLTQS 146 (234)
Q Consensus 115 ~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~ 146 (234)
+||+||..... .....-..+.|||.+.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 68999988776 345566667899999998876
Done!