BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026708
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 84 HGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVAEA 143
+G S+ GRR EMEDAV + Q FFGVYDGHGG++VA
Sbjct: 11 YGFTSICGRRPEMEDAVST-IPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 69
Query: 144 CKERMHEVLVEVIAGEEY----GEKNIE-WERVMEGCFGKMDEEVNRGRLREEMVGSTXX 198
C+ERMH L E IA E+ G+ +E W++ + F ++D E+ + E VGST
Sbjct: 70 CRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIE--SVAPETVGSTSV 127
Query: 199 XXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
NCGDSRAVL RG +PLSVDHK
Sbjct: 128 VAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKP 163
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 84 HGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVAEA 143
+G S+ GRR EMEDAV + Q FFGVYDGHGG++VA
Sbjct: 14 YGFTSICGRRPEMEDAVST-IPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 72
Query: 144 CKERMHEVLVEVIAGEEY----GEKNIE-WERVMEGCFGKMDEEVNRGRLREEMVGSTXX 198
C+ERMH L E IA E+ G+ +E W++ + F ++D E+ + E VGST
Sbjct: 73 CRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEIE--SVAPETVGSTSV 130
Query: 199 XXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
NCGDSRAVL RG +PLSVDHK
Sbjct: 131 VAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKP 166
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 74 ARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYD 133
R + ++ +G S+ GRR EMEDAV + Q FFGVYD
Sbjct: 16 PRGSHMSVPLYGFTSICGRRPEMEDAVST-IPRFLQSSSGSMLDGRFDPQSAAHFFGVYD 74
Query: 134 GHGGARVAEACKERMHEVLVEVIAGEEY----GEKNIE-WERVMEGCFGKMDEEVNRGRL 188
GHGG++VA C+ERMH L E IA E+ G+ +E W++ + F ++D E+ +
Sbjct: 75 GHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEIE--SV 132
Query: 189 REEMVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
E VGST NCGDSRAVL RG +PLSVDHK
Sbjct: 133 APETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKP 178
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 84 HGTMSVIGRRKEMEDAVRV---ELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARV 140
+G S+ GRR EMED+V L FFGVYDGHGG++V
Sbjct: 14 YGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQV 73
Query: 141 AEACKERMHEVLVEVIA--------GEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEM 192
A C+ERMH L E I G+ + EK W++ + F ++D E+ E
Sbjct: 74 ANYCRERMHLALTEEIVKEKPEFCDGDTWQEK---WKKALFNSFMRVDSEIETVAHAPET 130
Query: 193 VGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
VGST NCGDSRAVL RG + LSVDHK
Sbjct: 131 VGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKP 172
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 65 ENYDVLEKKARTNTVTCLS-HGTMSVIGRRKEMEDAVRVELGCMXXXXXXXX----XXXX 119
EN + L K + C+ GT+S+ G R EMEDA V +
Sbjct: 2 ENSNHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSP 61
Query: 120 XXXQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVI--AGEEYGEKN------IEWERV 171
FFGVYDGHGG +VA+ C++R+H L E I +E ++N ++W++V
Sbjct: 62 SLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKV 121
Query: 172 MEGCFGKMDEEV--NRGR------------LREEMVGSTXXXXXXXXXXXXXXNCGDSRA 217
CF +D E+ GR + E VGST NCGDSRA
Sbjct: 122 FTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRA 181
Query: 218 VLSRGGVVVPLSVDHKT 234
VL RG +PLSVDHK
Sbjct: 182 VLFRGKEAMPLSVDHKP 198
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXX----XXXXXXQKKYDFFGVYDGHGGARV 140
GT+S+ G R EMEDA V + FFGVYDGHGG +V
Sbjct: 20 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKV 79
Query: 141 AEACKERMHEVLVEVI--AGEEYGEKN------IEWERVMEGCFGKMDEEV--NRGR--- 187
A+ C++R+H L E I +E ++N ++W++V CF +D E+ GR
Sbjct: 80 ADYCRDRLHFALAEEIERIKDELSKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVV 139
Query: 188 ---------LREEMVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
+ E VGST NCGDSRAVL RG +PLSVDHK
Sbjct: 140 GSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKP 195
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXX----XXXXXXQKKYDFFGVYDGHGGARV 140
GT+S+ G R EMEDA V + FFGVYDGHGG +V
Sbjct: 30 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKV 89
Query: 141 AEACKERMHEVLVEVI--AGEEYGEKN------IEWERVMEGCFGKMDEEV--NRGR--- 187
A+ C++R+H L E I +E ++N ++W++V CF +D E+ GR
Sbjct: 90 ADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVV 149
Query: 188 ---------LREEMVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
+ E VGST NCGDSRAVL RG +PLSVDHK
Sbjct: 150 GSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKP 205
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXX----XXXXXXQKKYDFFGVYDGHGGARV 140
GT+S+ G R EMEDA V + FFGVYDGHGG +V
Sbjct: 6 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKV 65
Query: 141 AEACKERMHEVLVEVI--AGEEYGEKN------IEWERVMEGCFGKMDEEV--NRGR--- 187
A+ C++R+H L E I +E ++N ++W++V CF +D E+ GR
Sbjct: 66 ADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVV 125
Query: 188 ---------LREEMVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
+ E VGST NCGDSRAVL RG +PLSVDHK
Sbjct: 126 GSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKP 181
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXX----XXXXXXQKKYDFFGVYDGHGGARV 140
GT+S+ G R EMEDA V + FFGVYDGHGG +V
Sbjct: 21 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKV 80
Query: 141 AEACKERMHEVLVEVI--AGEEYGEKN------IEWERVMEGCFGKMDEEV--NRGR--- 187
A+ C++R+H L E I +E ++N ++W++V CF +D E+ GR
Sbjct: 81 ADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVV 140
Query: 188 ---------LREEMVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
+ E VGST NCGDSRAVL RG +PLSVDHK
Sbjct: 141 GSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKP 196
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXX----XXXXXXQKKYDFFGVYDGHGGARV 140
GT+S+ G R EMEDA V + FFGVYDGHGG +V
Sbjct: 17 GTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKV 76
Query: 141 AEACKERMHEVLVEVI--AGEEYGEKN------IEWERVMEGCFGKMDEEV--NRGR--- 187
A+ C++R+H L E I +E ++N ++W++V CF +D E+ GR
Sbjct: 77 ADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVV 136
Query: 188 ---------LREEMVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
+ E VGST NCGDSRAVL RG +PLSVDHK
Sbjct: 137 GSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKP 192
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 82 LSHGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVA 141
L +G S+ G R EMEDA +G + + FF VYDGH G+RVA
Sbjct: 24 LRYGLSSMQGWRVEMEDAHTAVVGIPHGL-------------EDWSFFAVYDGHAGSRVA 70
Query: 142 EACKERMHEVLVEV----IAGEEYGEKNIEWERVMEGC---FGKMDEEV-NRGRLREEM- 192
C + E + AG+ + E V G F K+DE + N LR M
Sbjct: 71 NYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMD 130
Query: 193 -VGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
GST NCGDSRAVL R G V + DHK
Sbjct: 131 RSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKP 173
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 128 FFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGR 187
FF VYDGHGGA VA+ C + L V E YG K E+E+ ++ F D + + +
Sbjct: 53 FFAVYDGHGGAEVAQYCSLHLPTFLKTV---EAYGRK--EFEKALKEAFLGFDATLLQEK 107
Query: 188 LREEM-----------------VGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSV 230
+ EE+ G T N GDSR V+ R G + +S
Sbjct: 108 VIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKALEMSF 167
Query: 231 DHKT 234
DHK
Sbjct: 168 DHKP 171
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 82 LSHGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVA 141
L +G S+ G R EMEDA +G + + FF VYDGH G++VA
Sbjct: 22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGL-------------ESWSFFAVYDGHAGSQVA 68
Query: 142 EACKERMHEVLVEVIAGEEY----GEKNIEWERVMEGC---FGKMDEE---VNRGRLREE 191
+ C E + L + +++ G ++ E V G F ++DE ++ + +
Sbjct: 69 KYCCEHL---LDHITNNQDFKGSAGAPSV--ENVKNGIRTGFLEIDEHMRVMSEKKHGAD 123
Query: 192 MVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
GST NCGDSR +L R V + DHK
Sbjct: 124 RSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKP 166
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 82 LSHGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVA 141
L +G S+ G R EMEDA +G + + FF VYDGH G++VA
Sbjct: 22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGL-------------ESWSFFAVYDGHAGSQVA 68
Query: 142 EACKERMHEVLVEVIAGEEY----GEKNIEWERVMEGC---FGKMDEE---VNRGRLREE 191
+ C E + L + +++ G ++ E V G F ++DE ++ + +
Sbjct: 69 KYCCEHL---LDHITNNQDFKGSAGAPSV--ENVKNGIRTGFLEIDEHMRVMSEKKHGAD 123
Query: 192 MVGSTXXXXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
GST NCGDSR +L R V + DHK
Sbjct: 124 RSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKP 166
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVAEAC 144
G S IG+RKE ED R + + +F VYDGHGG A+ C
Sbjct: 125 GCASQIGKRKENED--RFDFAQLTDEVL---------------YFAVYDGHGGPAAADFC 167
Query: 145 KERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVN-RGRLREEMV----GSTXXX 199
M + +++++ E KN+E ++ F ++D+ + RL + G+T
Sbjct: 168 HTHMEKCIMDLLPKE----KNLE--TLLTLAFLEIDKAFSSHARLSADATLLTSGTTATV 221
Query: 200 XXXXX-XXXXXXNCGDSRAVLSRGGVVVPLSVDH 232
+ GDSRA+L R G + L++DH
Sbjct: 222 ALLRDGIELVVASVGDSRAILCRKGKPMKLTIDH 255
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 85 GTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVAEAC 144
G S IG+RKE ED R + + +F VYDGHGG A+ C
Sbjct: 11 GCASQIGKRKENED--RFDFAQLTDEVL---------------YFAVYDGHGGPAAADFC 53
Query: 145 KERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVN-RGRLREEMV----GSTXXX 199
M + +++++ E KN+E ++ F ++D+ + RL + G+T
Sbjct: 54 HTHMEKCIMDLLPKE----KNLE--TLLTLAFLEIDKAFSSHARLSADATLLTSGTTATV 107
Query: 200 XXXXX-XXXXXXNCGDSRAVLSRGGVVVPLSVDH 232
+ GDSRA+L R G + L++DH
Sbjct: 108 ALLRDGIELVVASVGDSRAILCRKGKPMKLTIDH 141
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 128 FFGVYDGHGGARVAEACKERM----------HEVLVEVIAGEEYGE---KNIEWERVMEG 174
GV+DGH G ++A ER+ HE L+E+ E G ++W +
Sbjct: 68 LLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPND 127
Query: 175 CFGKMDEEVNRGRLR 189
F K ++ LR
Sbjct: 128 YFSKEASKLYFNSLR 142
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 128 FFGVYDGHGGARVAEACKERM----------HEVLVEVIAGEEYGE---KNIEWERVMEG 174
GV+DGH G ++A ER+ HE L+E+ E G ++W +
Sbjct: 68 LLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPND 127
Query: 175 CFGK 178
F K
Sbjct: 128 YFSK 131
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 133 DGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREE 191
G GA +AE H+VL+ I+ E R ++G +++ V RG+L E
Sbjct: 13 SGTMGAGIAEVAASHGHQVLLYDISAEAL-------TRAIDGIHARLNSRVTRGKLTAE 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,074,100
Number of Sequences: 62578
Number of extensions: 147292
Number of successful extensions: 342
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 31
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)