Query 026708
Match_columns 234
No_of_seqs 252 out of 1319
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.5E-31 3.2E-36 240.3 19.3 145 78-234 61-207 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2.4E-31 5.2E-36 224.5 12.6 156 66-234 6-166 (379)
3 PTZ00224 protein phosphatase 2 100.0 8.7E-28 1.9E-32 216.8 16.6 136 70-234 10-146 (381)
4 COG0631 PTC1 Serine/threonine 100.0 2E-27 4.4E-32 205.3 16.2 139 81-234 7-149 (262)
5 KOG0698 Serine/threonine prote 100.0 3.7E-27 7.9E-32 210.0 17.3 141 82-234 40-183 (330)
6 PF00481 PP2C: Protein phospha 99.9 9.9E-28 2.1E-32 206.0 12.3 137 83-234 1-141 (254)
7 KOG0699 Serine/threonine prote 99.9 2.4E-26 5.1E-31 200.4 11.6 72 68-155 8-79 (542)
8 PRK14559 putative protein seri 99.9 1.2E-24 2.6E-29 206.8 16.8 146 81-234 374-526 (645)
9 cd00143 PP2Cc Serine/threonine 99.9 7.5E-23 1.6E-27 173.6 17.3 136 83-234 2-140 (254)
10 smart00332 PP2Cc Serine/threon 99.9 2.6E-22 5.7E-27 170.9 18.4 136 81-234 5-143 (255)
11 KOG0700 Protein phosphatase 2C 99.9 5E-23 1.1E-27 182.5 11.6 110 124-233 97-247 (390)
12 KOG1323 Serine/threonine phosp 99.8 3.1E-19 6.7E-24 154.7 11.9 174 61-234 57-287 (493)
13 PF13672 PP2C_2: Protein phosp 99.7 1.3E-15 2.7E-20 126.9 13.2 129 87-233 3-138 (212)
14 KOG1379 Serine/threonine prote 99.3 4.7E-11 1E-15 103.6 14.5 113 94-232 89-208 (330)
15 smart00331 PP2C_SIG Sigma fact 99.3 6.7E-11 1.5E-15 97.0 14.1 97 124-232 28-127 (193)
16 KOG0618 Serine/threonine phosp 98.4 3.8E-07 8.2E-12 89.1 5.9 127 81-231 521-655 (1081)
17 TIGR02865 spore_II_E stage II 98.3 1.8E-05 4E-10 78.0 14.9 117 89-234 560-678 (764)
18 PF07228 SpoIIE: Stage II spor 98.0 0.00015 3.2E-09 59.0 12.6 96 124-230 2-101 (193)
19 PRK10693 response regulator of 85.6 13 0.00029 32.5 11.0 51 172-225 207-259 (303)
20 PF05785 CNF1: Rho-activating 37.3 34 0.00074 29.9 3.0 26 189-215 128-153 (281)
21 PF01436 NHL: NHL repeat; Int 35.1 78 0.0017 17.1 3.5 22 199-220 7-28 (28)
22 TIGR02276 beta_rpt_yvtn 40-res 29.0 83 0.0018 18.0 3.0 18 204-221 3-20 (42)
23 TIGR00067 glut_race glutamate 25.8 43 0.00092 28.7 1.7 22 129-150 1-23 (251)
24 PRK00865 glutamate racemase; P 22.9 53 0.0011 28.2 1.7 23 128-150 7-30 (261)
25 COG0796 MurI Glutamate racemas 21.5 67 0.0015 28.0 2.1 25 126-150 5-30 (269)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.98 E-value=1.5e-31 Score=240.30 Aligned_cols=145 Identities=32% Similarity=0.430 Sum_probs=118.2
Q ss_pred CccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHh
Q 026708 78 TVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIA 157 (234)
Q Consensus 78 ~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~ 157 (234)
+.+.+.+|..|++|.|+.|||++++..++.... +.......+..||||||||||+.+|+|++++|++.|.+...
T Consensus 61 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~------~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~ 134 (365)
T PLN03145 61 FIPVVRSGAWADIGSRSSMEDVYICVDNFMSDF------GLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED 134 (365)
T ss_pred ccCceEEEEEccccCCCCCCCceEecccccccc------cccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 444588999999999999999998876553210 01111123578999999999999999999999998876433
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHhcC--CCCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708 158 GEEYGEKNIEWERVMEGCFGKMDEEVNRGR--LREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234 (234)
Q Consensus 158 ~~~~~~~~~~~~~~l~~af~~~d~~l~~~~--~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P 234 (234)
. ...+.++|.++|..+|..|.+.. .....+|||+++++|.++.+|||||||||||++++|++++||+||+|
T Consensus 135 ~------~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~ 207 (365)
T PLN03145 135 F------PREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKP 207 (365)
T ss_pred c------chhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCC
Confidence 1 34678889999999999997651 23345999999999999999999999999999999999999999998
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-31 Score=224.51 Aligned_cols=156 Identities=33% Similarity=0.420 Sum_probs=134.3
Q ss_pred ccccchhhcccCCccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHH
Q 026708 66 NYDVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACK 145 (234)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as 145 (234)
+.|-++|++..+..+.+.||+.|++|||-+|||++........+. .+|+||||||||.|+.+|.+|+
T Consensus 6 dKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l-------------~dWSfFAVfDGHAGs~va~~c~ 72 (379)
T KOG0697|consen 6 DKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPL-------------EDWSFFAVFDGHAGSQVANHCA 72 (379)
T ss_pred cCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCc-------------cCceEEEEEcCccchHHHHHHH
Confidence 456677888889899999999999999999999998876654322 6899999999999999999999
Q ss_pred HHHHHHHHHHHhcccC--CCchhHHHHHHHHHHHHHHHHHHhc---CCCCCCCccceeEEEEeCCeEEEEEcCcccEEEE
Q 026708 146 ERMHEVLVEVIAGEEY--GEKNIEWERVMEGCFGKMDEEVNRG---RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLS 220 (234)
Q Consensus 146 ~~l~~~l~~~~~~~~~--~~~~~~~~~~l~~af~~~d~~l~~~---~~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~ 220 (234)
++|.++|...-.+... ....+.++.-|+..|+++|+.+... ......+||||+++++.+.++|++||||||||||
T Consensus 73 ~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~ 152 (379)
T KOG0697|consen 73 EHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLC 152 (379)
T ss_pred HHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhhee
Confidence 9999988765443321 2345688999999999999988776 3344569999999999999999999999999999
Q ss_pred eCCeeeeCCCCCCC
Q 026708 221 RGGVVVPLSVDHKT 234 (234)
Q Consensus 221 r~g~~~~LT~DH~P 234 (234)
|+|+++.-|.||||
T Consensus 153 rng~~~f~TqDHKP 166 (379)
T KOG0697|consen 153 RNGEVVFSTQDHKP 166 (379)
T ss_pred cCCceEEeccCCCC
Confidence 99999999999998
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.95 E-value=8.7e-28 Score=216.79 Aligned_cols=136 Identities=29% Similarity=0.350 Sum_probs=110.0
Q ss_pred chhhcccCCccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHH
Q 026708 70 LEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMH 149 (234)
Q Consensus 70 ~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~ 149 (234)
..+.........+.+|..+++|+|++|||++++... .+..||||||||||..+|+|++++|+
T Consensus 10 ~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~------------------~~~~lfgVfDGHgG~~~S~~~~~~l~ 71 (381)
T PTZ00224 10 LSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYLT------------------DDWGFFGVFDGHVNDECSQYLARAWP 71 (381)
T ss_pred cccccccCCCccEEEEEEeCCCCCCCCCCeeEeccC------------------CCceEEEEEeCCCcHHHHHHHHHHHH
Confidence 333334345557999999999999999999887532 24569999999999999999999998
Q ss_pred HHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEEe-CCeEEEEEcCcccEEEEeCCeeeeC
Q 026708 150 EVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVG-KEELVVANCGDSRAVLSRGGVVVPL 228 (234)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GtTa~v~li~-~~~l~vANvGDSRa~l~r~g~~~~L 228 (234)
..|.+... ....+.|+.+|..+|+.|.+. ...+|||+++++|. +.++|||||||||||++++|++++|
T Consensus 72 ~~l~~~~~--------~~~~~~l~~a~~~~d~~i~~~---~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~L 140 (381)
T PTZ00224 72 QALEKEPE--------PMTDERMEELCLEIDEEWMDS---GREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFA 140 (381)
T ss_pred HHHHhccc--------cccHHHHHHHHHHHHHHHHhc---ccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEc
Confidence 77654321 112345899999999999865 23569999999885 6799999999999999999999999
Q ss_pred CCCCCC
Q 026708 229 SVDHKT 234 (234)
Q Consensus 229 T~DH~P 234 (234)
|+||+|
T Consensus 141 T~DH~~ 146 (381)
T PTZ00224 141 TEDHKP 146 (381)
T ss_pred ccCCCC
Confidence 999997
No 4
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=2e-27 Score=205.35 Aligned_cols=139 Identities=29% Similarity=0.385 Sum_probs=117.2
Q ss_pred ceeEEEEecccC-CCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcc
Q 026708 81 CLSHGTMSVIGR-RKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGE 159 (234)
Q Consensus 81 ~~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~ 159 (234)
.+.++..+..|. |.+|||++++..+... .. ..||+|||||||+.++++|++.+++.|.+.+...
T Consensus 7 ~~~~~~~s~~g~~R~~NeD~~~~~~~~~~--------------~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~ 71 (262)
T COG0631 7 SLKVAGLSDVGTVRKHNEDAFLIKPNENG--------------NL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDET 71 (262)
T ss_pred eeeeeeeccCCCccCCCCcceeeccccCC--------------cc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777 8899999999874322 13 6899999999999999999999999999998753
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhc---CCCCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708 160 EYGEKNIEWERVMEGCFGKMDEEVNRG---RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234 (234)
Q Consensus 160 ~~~~~~~~~~~~l~~af~~~d~~l~~~---~~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P 234 (234)
........+.+.|.+++..+|+.+... ......||||++++++.++++||||||||||||+++|.++|||.||+|
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~ 149 (262)
T COG0631 72 NFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSL 149 (262)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcH
Confidence 332212227899999999999999887 245688999999999999999999999999999999999999999985
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=3.7e-27 Score=209.98 Aligned_cols=141 Identities=40% Similarity=0.530 Sum_probs=116.2
Q ss_pred eeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccC
Q 026708 82 LSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEY 161 (234)
Q Consensus 82 ~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~ 161 (234)
...+.++.+|+|..|||++.....+...... ......||||||||||+.+|+|+.++|+..|.+.+.....
T Consensus 40 ~~~~~~~~~~~r~~med~~~~~~~~~~~~~~---------~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~ 110 (330)
T KOG0698|consen 40 RLGSLLSIRGRRRKMEDRHVQLPDFLEEDVG---------GEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKD 110 (330)
T ss_pred cceEEEecCCCCCccCcceeecccccccccC---------CCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccc
Confidence 3455668999999999999998876531100 1126899999999999999999999999999998875321
Q ss_pred CCchhHHHHHHHHHHH-HHHHHHHhcCCCCCCCccceeEEEEeCC-eEEEEEcCcccEEEEeCC-eeeeCCCCCCC
Q 026708 162 GEKNIEWERVMEGCFG-KMDEEVNRGRLREEMVGSTAVVAVVGKE-ELVVANCGDSRAVLSRGG-VVVPLSVDHKT 234 (234)
Q Consensus 162 ~~~~~~~~~~l~~af~-~~d~~l~~~~~~~~~~GtTa~v~li~~~-~l~vANvGDSRa~l~r~g-~~~~LT~DH~P 234 (234)
...++.+++++|. .+|..+.........+||||++++|.++ +|||||+|||||||++.| .+++||.||+|
T Consensus 111 ---~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP 183 (330)
T KOG0698|consen 111 ---RQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKP 183 (330)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCC
Confidence 1468999999999 6999998652335789999999999865 999999999999999865 89999999998
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.95 E-value=9.9e-28 Score=206.05 Aligned_cols=137 Identities=36% Similarity=0.515 Sum_probs=114.0
Q ss_pred eEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCC
Q 026708 83 SHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYG 162 (234)
Q Consensus 83 ~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~ 162 (234)
.+|+.+..|+|+.|||++++..++.... ......+|||||||||..+++|++.+|+..|.+......
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~-----------~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~-- 67 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNS-----------GNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFND-- 67 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCT-----------TEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CcCeecCCCCCCcccCEEEEecCccccC-----------CCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhccccc--
Confidence 3788999999999999999998775311 125889999999999999999999999988888776421
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHhcCC--CCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeee-eCCCCCCC
Q 026708 163 EKNIEWERVMEGCFGK-MDEEVNRGRL--REEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVV-PLSVDHKT 234 (234)
Q Consensus 163 ~~~~~~~~~l~~af~~-~d~~l~~~~~--~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~-~LT~DH~P 234 (234)
...+.++|..+|.. ++..+..... ....+||||++++|.+++|||||||||||||++.+... +||+||+|
T Consensus 68 --~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~ 141 (254)
T PF00481_consen 68 --GNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKP 141 (254)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---ST
T ss_pred --ccchhhcccceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecccccccccccccc
Confidence 22789999999999 9999886311 46789999999999999999999999999999999888 99999998
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-26 Score=200.38 Aligned_cols=72 Identities=33% Similarity=0.518 Sum_probs=64.7
Q ss_pred ccchhhcccCCccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHH
Q 026708 68 DVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKER 147 (234)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~ 147 (234)
|.+.|.+..++..-+.||..+++|||-.|||++-++.++.. ++++|+|||||||.++|.||+..
T Consensus 8 P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~ld~----------------~t~mF~VYDGHGG~EVa~yca~k 71 (542)
T KOG0699|consen 8 PITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDLDT----------------DTHMFGVYDGHGGTEVAKYCAAK 71 (542)
T ss_pred CccccccccccCccchhchhhhhccccchhhhhcccccccC----------------cceEEEEecCCCcHHHHHHHHHh
Confidence 56667777788888999999999999999999999888764 89999999999999999999999
Q ss_pred HHHHHHHH
Q 026708 148 MHEVLVEV 155 (234)
Q Consensus 148 l~~~l~~~ 155 (234)
|+.+|.+.
T Consensus 72 LPdflK~~ 79 (542)
T KOG0699|consen 72 LPDFLKER 79 (542)
T ss_pred hhHHHHhH
Confidence 99988864
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.92 E-value=1.2e-24 Score=206.82 Aligned_cols=146 Identities=22% Similarity=0.255 Sum_probs=110.1
Q ss_pred ceeEEEEecccC-CCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcc
Q 026708 81 CLSHGTMSVIGR-RKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGE 159 (234)
Q Consensus 81 ~~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~ 159 (234)
.+.++..|++|. |++|||++.+...+.....+ .........+|+|||||||+.++++|++.+.+.|.+.+...
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~------~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~ 447 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENP------HGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQH 447 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccc------cccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence 478899999997 99999998776533110000 00000245789999999999999988888888887766522
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhcC---C--CCCCCccceeEEEEeCCeEEEEEcCcccEEEE-eCCeeeeCCCCCC
Q 026708 160 EYGEKNIEWERVMEGCFGKMDEEVNRGR---L--REEMVGSTAVVAVVGKEELVVANCGDSRAVLS-RGGVVVPLSVDHK 233 (234)
Q Consensus 160 ~~~~~~~~~~~~l~~af~~~d~~l~~~~---~--~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~-r~g~~~~LT~DH~ 233 (234)
.. . .....+.|+++|..+|+.|.+.. . ....||||+++++|.++.+|||||||||+|++ ++|++++||+||+
T Consensus 448 ~~-~-~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs 525 (645)
T PRK14559 448 WQ-D-ELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHE 525 (645)
T ss_pred hc-c-cccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCC
Confidence 11 1 11236779999999999997641 1 34569999999999999999999999999998 5789999999998
Q ss_pred C
Q 026708 234 T 234 (234)
Q Consensus 234 P 234 (234)
+
T Consensus 526 ~ 526 (645)
T PRK14559 526 V 526 (645)
T ss_pred H
Confidence 5
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.90 E-value=7.5e-23 Score=173.58 Aligned_cols=136 Identities=37% Similarity=0.487 Sum_probs=115.7
Q ss_pred eEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCC
Q 026708 83 SHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYG 162 (234)
Q Consensus 83 ~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~ 162 (234)
.++..+..|.|+.|||++++...... .+..+|+|||||||...++++++.+...|.+.+.....
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~---------------~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~- 65 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN---------------EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT- 65 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC---------------CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 46777888899999999998755321 26789999999999999999999999999988764211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcC---CCCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708 163 EKNIEWERVMEGCFGKMDEEVNRGR---LREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234 (234)
Q Consensus 163 ~~~~~~~~~l~~af~~~d~~l~~~~---~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P 234 (234)
.....+...|..+|..+++.+.... .....+|||++++++.++.++++|+||||+|+++++++++||.||++
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~ 140 (254)
T cd00143 66 LSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKP 140 (254)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCC
Confidence 2256778899999999999998762 24567999999999999999999999999999999999999999985
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.90 E-value=2.6e-22 Score=170.88 Aligned_cols=136 Identities=40% Similarity=0.535 Sum_probs=114.3
Q ss_pred ceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhccc
Q 026708 81 CLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEE 160 (234)
Q Consensus 81 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~ 160 (234)
.+.++..+..|.|..|||++++...+. ....+|+|||||||..+|+++++.+...+.+......
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~----------------~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~ 68 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLS----------------DSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHK 68 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCC----------------CCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcc
Confidence 467777888899999999998875431 3688999999999999999999999998887654211
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCC---CCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708 161 YGEKNIEWERVMEGCFGKMDEEVNRGRL---REEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234 (234)
Q Consensus 161 ~~~~~~~~~~~l~~af~~~d~~l~~~~~---~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P 234 (234)
.....+.+.|.++|..+++.+..... ....+|||++++++.++.+|++|+||||+|+++++++.+||.||+|
T Consensus 69 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~ 143 (255)
T smart00332 69 --DELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKP 143 (255)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCC
Confidence 11246888999999999999987621 2357999999999999999999999999999999999999999986
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=5e-23 Score=182.47 Aligned_cols=110 Identities=30% Similarity=0.495 Sum_probs=94.7
Q ss_pred CCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCC----------------------------CchhHHHHHHHHH
Q 026708 124 KKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYG----------------------------EKNIEWERVMEGC 175 (234)
Q Consensus 124 ~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~----------------------------~~~~~~~~~l~~a 175 (234)
.++.||||||||||.++++|++++|+.++..++....+. .....+.++|.+|
T Consensus 97 ~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~A 176 (390)
T KOG0700|consen 97 NGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKA 176 (390)
T ss_pred CCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHH
Confidence 589999999999999999999999999999766542110 1146788999999
Q ss_pred HHHHHHHHHhc-------CCCCCCCccceeEEEEeCCeEEEEEcCcccEEEEe---CC---eeeeCCCCCC
Q 026708 176 FGKMDEEVNRG-------RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSR---GG---VVVPLSVDHK 233 (234)
Q Consensus 176 f~~~d~~l~~~-------~~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r---~g---~~~~LT~DH~ 233 (234)
|.++|+.|... .+....+|+||+|++|.+..|||||+|||||||+. +| .++|||.||+
T Consensus 177 f~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn 247 (390)
T KOG0700|consen 177 FEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHN 247 (390)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhc
Confidence 99999999765 56678899999999999999999999999999975 23 6899999997
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-19 Score=154.67 Aligned_cols=174 Identities=24% Similarity=0.283 Sum_probs=125.8
Q ss_pred CCCCcccccchhhcccCCccceeEEEEecccCCCCCCcceEEecCCCCC---------C-CCCCC------------CCC
Q 026708 61 SSSSENYDVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGG---------G-GGGDG------------DGD 118 (234)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~---------~-~~~~~------------~~~ 118 (234)
+++.-.+|++-.......|-.+.|+-+-..|+--+|||...+....... . +..+. +..
T Consensus 57 ssdh~~rpvl~~r~~~rmp~~~gyae~inagkt~~nedqas~~~l~~~~~~gs~t~~~n~n~~~~~~~l~~g~~~~~k~~ 136 (493)
T KOG1323|consen 57 SSDHSVRPVLCPRFPHRMPLYVGYAEAINAGKTVQNEDQASAKMLVLTQHQGSETRKRNSNENDDDPMLTPGGDDTVKSS 136 (493)
T ss_pred ccCccccceeccCccccCchhhhHHHHhhcCccccccccccceEEEEecccCccccCCCCCccccCcCCCCCCCcchhhc
Confidence 3344456777777776766556666666777778889976543221110 0 00000 001
Q ss_pred CCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccC----------------------------------CCc
Q 026708 119 DDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEY----------------------------------GEK 164 (234)
Q Consensus 119 ~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~----------------------------------~~~ 164 (234)
......+..+|.+||||.|+.+|-.++..|+++|.+.+..... -..
T Consensus 137 ~~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~ 216 (493)
T KOG1323|consen 137 MFAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRH 216 (493)
T ss_pred ccCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCch
Confidence 1234457899999999999999999999999988876641100 011
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-CCCCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708 165 NIEWERVMEGCFGKMDEEVNRG-RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234 (234)
Q Consensus 165 ~~~~~~~l~~af~~~d~~l~~~-~~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P 234 (234)
..-+..+|+.||+.||+.|... ..-...+||||++++..-++|||||.|||||+|+|++++++||++.+|
T Consensus 217 E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP 287 (493)
T KOG1323|consen 217 EHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP 287 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc
Confidence 2235789999999999999877 334567899999999999999999999999999999999999999998
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.66 E-value=1.3e-15 Score=126.92 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=82.3
Q ss_pred EecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCCCchh
Q 026708 87 MSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNI 166 (234)
Q Consensus 87 ~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~ 166 (234)
.+++|.+..|||++.+... .+..+++|+||+||...++.++..++..+.+.+..........
T Consensus 3 ~sh~~~~~~nqD~~~~~~~------------------~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~ 64 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD------------------DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPS 64 (212)
T ss_dssp ----TTSSS--EEEEEE-T------------------CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred ccccCCCCCCCCCEEeeeC------------------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchH
Confidence 4788999999999996544 2556779999999999999988888988888877543311111
Q ss_pred HHHHHHHHHHHHHHHHH------HhcCCCCCCCccceeEEEEeCCeEEEEEcCcccEEE-EeCCeeeeCCCCCC
Q 026708 167 EWERVMEGCFGKMDEEV------NRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVL-SRGGVVVPLSVDHK 233 (234)
Q Consensus 167 ~~~~~l~~af~~~d~~l------~~~~~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l-~r~g~~~~LT~DH~ 233 (234)
.....++.+...+...+ ..........+||++++++.++.++++|+||||+|+ .++|.+..|+.||+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~ 138 (212)
T PF13672_consen 65 SIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHS 138 (212)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---B
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCcc
Confidence 12333333333333221 111235567899999999999999999999999965 57999999999985
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.32 E-value=4.7e-11 Score=103.56 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCCh-----HHHHHHHHHHHHHHHHHHhcccCCCchhHH
Q 026708 94 KEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGA-----RVAEACKERMHEVLVEVIAGEEYGEKNIEW 168 (234)
Q Consensus 94 ~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~-----~~a~~as~~l~~~l~~~~~~~~~~~~~~~~ 168 (234)
+.-||++++..+ ....+.||+||+||+ ..+.|. ..|+..+.+...... ....++
T Consensus 89 ~~GEDa~Fvss~------------------~~~~v~GVADGVGGWa~~GiDpg~fS-~eLM~~ce~~v~~~~--~~~~~P 147 (330)
T KOG1379|consen 89 KGGEDAWFVSSN------------------PHAIVMGVADGVGGWAEYGIDPGAFS-RELMSNCERLVQNSD--FNPSDP 147 (330)
T ss_pred CCCCcceeeccC------------------cccceEEEccccchHhhcCcCHHHHH-HHHHHHHHHHhcccc--cCCCCh
Confidence 455999999865 367899999999955 567776 555655555554321 234478
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEEe--CCeEEEEEcCcccEEEEeCCeeeeCCCCC
Q 026708 169 ERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVG--KEELVVANCGDSRAVLSRGGVVVPLSVDH 232 (234)
Q Consensus 169 ~~~l~~af~~~d~~l~~~~~~~~~~GtTa~v~li~--~~~l~vANvGDSRa~l~r~g~~~~LT~DH 232 (234)
...|..||.++-.. ....-++|||+++++. +++||+||+|||...++|+|++++-|..+
T Consensus 148 ~~lL~~ay~~l~~~-----~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q 208 (330)
T KOG1379|consen 148 VNLLEKAYAELKSQ-----KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQ 208 (330)
T ss_pred HHHHHHHHHHHhhc-----CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchh
Confidence 88999999876433 2234588899999997 89999999999999999999887766543
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.31 E-value=6.7e-11 Score=96.97 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=75.3
Q ss_pred CCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEE-
Q 026708 124 KKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVV- 202 (234)
Q Consensus 124 ~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GtTa~v~li- 202 (234)
++..+|+|+||||+...|.+++..+...+.+.+... ..+.+.+..+|+.+... ....+|+|++++++
T Consensus 28 ~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~----------~~~~~~l~~~n~~l~~~--~~~~~~~T~~~~~id 95 (193)
T smart00331 28 EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG----------ISLSQILERLNRAIYEN--GEDGMFATLFLALYD 95 (193)
T ss_pred CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHHhc--CCCCcEEEEEEEEEE
Confidence 357899999999988888888899888888776531 12555667777777654 24568999999998
Q ss_pred -eCCeEEEEEcCcccEEEEe-CCeeeeCCCCC
Q 026708 203 -GKEELVVANCGDSRAVLSR-GGVVVPLSVDH 232 (234)
Q Consensus 203 -~~~~l~vANvGDSRa~l~r-~g~~~~LT~DH 232 (234)
.+++++++|+||+|+|+++ ++..++++.+-
T Consensus 96 ~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~ 127 (193)
T smart00331 96 FAGGTLSYANAGHSPPYLLRADGGLVEDLDDL 127 (193)
T ss_pred CCCCEEEEEeCCCCceEEEECCCCeEEEcCCC
Confidence 6889999999999999998 66555555543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.40 E-value=3.8e-07 Score=89.12 Aligned_cols=127 Identities=22% Similarity=0.312 Sum_probs=102.2
Q ss_pred ceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhccc
Q 026708 81 CLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEE 160 (234)
Q Consensus 81 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~ 160 (234)
-+.||++.+.|.|.++--+.....+|.. .....||+|||-+-.....++...+..++.+++...
T Consensus 521 ~~t~Gv~~~~gqrnk~c~~~~~v~nf~~---------------~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~- 584 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNKVCSRAVWVENFFL---------------NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY- 584 (1081)
T ss_pred heeeccchhcccccchhhhhhhhhhccc---------------CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc-
Confidence 4669999999999988777666667665 478899999999999999999999999999988742
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEEeC--------CeEEEEEcCcccEEEEeCCeeeeCCCC
Q 026708 161 YGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGK--------EELVVANCGDSRAVLSRGGVVVPLSVD 231 (234)
Q Consensus 161 ~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GtTa~v~li~~--------~~l~vANvGDSRa~l~r~g~~~~LT~D 231 (234)
.+-.+.|..+|..+++++-.. ...-|..++.+.|.. .++++||+|+|.+|+|++|+..++|+-
T Consensus 585 -----~~et~~mr~~fl~~~rklg~~---g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~ 655 (1081)
T KOG0618|consen 585 -----GNETEQMRNTFLRLNRKLGEE---GQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRS 655 (1081)
T ss_pred -----cChHHHHHHHHHHHhhhhhhh---hccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCccccc
Confidence 122344999999999999654 445566666666643 488999999999999999998888763
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.30 E-value=1.8e-05 Score=78.04 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=84.5
Q ss_pred cccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCCCchhHH
Q 026708 89 VIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEW 168 (234)
Q Consensus 89 ~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~ 168 (234)
.++.+..+.|.|.+.... ++..+++|+||+|....|...+..+.+.+.+.+... .+
T Consensus 560 ~k~g~~vsGD~y~~~~l~-----------------~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g------~~- 615 (764)
T TIGR02865 560 AKDGELVSGDSYSFGKLS-----------------AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG------FD- 615 (764)
T ss_pred cCCCCcccCceEEEEEEC-----------------CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC------CC-
Confidence 334466778988776532 366889999999966666666677777666655421 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEE--eCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708 169 ERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVV--GKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234 (234)
Q Consensus 169 ~~~l~~af~~~d~~l~~~~~~~~~~GtTa~v~li--~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P 234 (234)
...++..+|..+... ....+.+|+.+++| ..+.+.++|+|+++.|+.+++.+.+++..+-|
T Consensus 616 ---~~~ai~~lN~~L~~~--~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP 678 (764)
T TIGR02865 616 ---REVAIKTVNSILSLR--STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP 678 (764)
T ss_pred ---HHHHHHHHHHHHHhC--CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce
Confidence 255667777776543 23357899999998 47899999999999999999999888877655
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.01 E-value=0.00015 Score=58.98 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=66.0
Q ss_pred CCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEE-
Q 026708 124 KKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVV- 202 (234)
Q Consensus 124 ~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~~~~~~~~GtTa~v~li- 202 (234)
++..++.|+|+.|-.-.|.+.+-.+...+....... .. ..+.+..+|+.+... .......+|++++++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~------~~----p~~~l~~ln~~l~~~-~~~~~~~~t~~~~~~d 70 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG------LD----PEELLEALNRRLYRD-LKGDNRYATACYAIID 70 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT------TS----HHHHHHHHHHHHHHH-TTTTSTTEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC------CC----HHHHHHHHHHHHHHH-hhhccccceEEEEEec
Confidence 477899999999955555556577777777666431 12 455566666666433 111247788888887
Q ss_pred -eCCeEEEEEcCcccEEEEeC--CeeeeCCC
Q 026708 203 -GKEELVVANCGDSRAVLSRG--GVVVPLSV 230 (234)
Q Consensus 203 -~~~~l~vANvGDSRa~l~r~--g~~~~LT~ 230 (234)
..+.++++|+|++.+++++. +....+..
T Consensus 71 ~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~ 101 (193)
T PF07228_consen 71 PETGTLTYANAGHPPPLLLRPGGREIEQLES 101 (193)
T ss_dssp TTTTEEEEEEESSSEEEEEETTCTEEEEETC
T ss_pred ccceEEEEeCCCCCCEEEEeccccceeeccc
Confidence 56789999999999999997 45555444
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=85.58 E-value=13 Score=32.52 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccceeEEEE--eCCeEEEEEcCcccEEEEeCCee
Q 026708 172 MEGCFGKMDEEVNRGRLREEMVGSTAVVAVV--GKEELVVANCGDSRAVLSRGGVV 225 (234)
Q Consensus 172 l~~af~~~d~~l~~~~~~~~~~GtTa~v~li--~~~~l~vANvGDSRa~l~r~g~~ 225 (234)
..+.+..+|+.+....... --|++.+++ ..+.|..+|.|-.-.++..++.+
T Consensus 207 p~~~l~~lN~~l~~~~~~~---~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 207 LGALLKQVNHLLRQANLPG---QFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHHhcCCCc---eeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 3555667777777651111 258888887 45689999999999886544444
No 20
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=37.28 E-value=34 Score=29.94 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=19.1
Q ss_pred CCCCCccceeEEEEeCCeEEEEEcCcc
Q 026708 189 REEMVGSTAVVAVVGKEELVVANCGDS 215 (234)
Q Consensus 189 ~~~~~GtTa~v~li~~~~l~vANvGDS 215 (234)
....+|||.+++ +.++.+|..|+|-+
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 356799998877 68899999999965
No 21
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.09 E-value=78 Score=17.12 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.7
Q ss_pred EEEEeCCeEEEEEcCcccEEEE
Q 026708 199 VAVVGKEELVVANCGDSRAVLS 220 (234)
Q Consensus 199 v~li~~~~l~vANvGDSRa~l~ 220 (234)
+++-.++.|||+-.|..|+..+
T Consensus 7 vav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEETTSEEEEEECCCTEEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEC
Confidence 3444889999999998887653
No 22
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=29.00 E-value=83 Score=18.00 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.6
Q ss_pred CCeEEEEEcCcccEEEEe
Q 026708 204 KEELVVANCGDSRAVLSR 221 (234)
Q Consensus 204 ~~~l~vANvGDSRa~l~r 221 (234)
++.||++|-|+-.+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567999999888887775
No 23
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=25.81 E-value=43 Score=28.70 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=18.1
Q ss_pred EEEec-CCCChHHHHHHHHHHHH
Q 026708 129 FGVYD-GHGGARVAEACKERMHE 150 (234)
Q Consensus 129 f~VfD-GHGG~~~a~~as~~l~~ 150 (234)
.|||| |.||-.+.+.+.+.++.
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~ 23 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPK 23 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCC
Confidence 37888 99999999888877764
No 24
>PRK00865 glutamate racemase; Provisional
Probab=22.86 E-value=53 Score=28.20 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEec-CCCChHHHHHHHHHHHH
Q 026708 128 FFGVYD-GHGGARVAEACKERMHE 150 (234)
Q Consensus 128 lf~VfD-GHGG~~~a~~as~~l~~ 150 (234)
-.|||| |.||-.+.+.+.+.++.
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~ 30 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPD 30 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCC
Confidence 489999 99999998888777764
No 25
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.52 E-value=67 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=20.0
Q ss_pred eeEEEEec-CCCChHHHHHHHHHHHH
Q 026708 126 YDFFGVYD-GHGGARVAEACKERMHE 150 (234)
Q Consensus 126 ~~lf~VfD-GHGG~~~a~~as~~l~~ 150 (234)
..-.|||| |.||-.+...+.+.|+.
T Consensus 5 ~~~IgvFDSGVGGLsVlrei~~~LP~ 30 (269)
T COG0796 5 QPPIGVFDSGVGGLSVLREIRRQLPD 30 (269)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHCCC
Confidence 34678999 99999998888777764
Done!