BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026709
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JIM5|YIPF7_MOUSE Protein YIPF7 OS=Mus musculus GN=Yipf7 PE=2 SV=1
Length = 254
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 10/218 (4%)
Query: 13 PSGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSA--TPASYGGPISTSTSAG 70
PS + GN+ R P A QP+ PA + F+ D G PAS S S S
Sbjct: 23 PSCNDSNAYGNVYGYREPQATEQPSSPAPPEM-FLPSDYGGQLFQPASNLDYYSQSPSVD 81
Query: 71 GSASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQ 129
+FD+E PLL+ELGI+ D IW+KT ++LNP + + ++ +DL+GPI+ ++ G
Sbjct: 82 ---TFDEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCVALGATL 138
Query: 130 LLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 189
L+AGK QFG + G + + ++ + N+++ N + SV+GYC+LP+V+L++ ++
Sbjct: 139 LMAGKAQFGYVYGMSAIGCLGIHALLNLMS--NSGVSYGCVASVLGYCLLPMVLLSSCAV 196
Query: 190 FLPQGGAIRFAVSAVFVLWAARASTNLMVS-LADGGEE 226
F G I + + + W + +++ + +S LA G++
Sbjct: 197 FFSLQGTIGTMSALLIITWCSLSASKIFISALAMEGQQ 234
>sp|Q7SXS2|YIPF5_XENLA Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1
Length = 256
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 119/206 (57%), Gaps = 24/206 (11%)
Query: 23 NINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLL 82
+NQ++ P Q +P + P +AT + YG ++FDDE PLL
Sbjct: 53 EMNQQQQPYTG-QIYQPTQTYTP-------TATESVYG------------STFDDEPPLL 92
Query: 83 DELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVIL 141
+ELGI+ D IW+KT ++L+P +V + ++ +DL+GP+V L+FG LLAGK+QFG +
Sbjct: 93 EELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVY 152
Query: 142 GWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAV 201
G + + +Y + N+++ + +SV+GYC+LP++IL+ F++ G + +
Sbjct: 153 GISAMGCLGMYCLLNLMSMT--GVSFGCVSSVLGYCLLPMIILSTFAVIFSLQGILGIVL 210
Query: 202 SAVFVLWAARASTNLMVS-LADGGEE 226
+A+ + W + +++ + +S LA G++
Sbjct: 211 AALIIGWCSFSASKIFISALAMDGQQ 236
>sp|Q8N8F6|YIPF7_HUMAN Protein YIPF7 OS=Homo sapiens GN=YIPF7 PE=1 SV=2
Length = 280
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 14 SGGNPTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGS- 72
SG + GN+ R A QP +PAS M G A + P S S S
Sbjct: 48 SGNDSNAYGNLYGSRKQQAGEQP-QPASFVPSEMLMSSGYA--GQFFQPASNSDYYSQSP 104
Query: 73 --ASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQ 129
SFD+E PLL+ELGIH D IW+KT ++LNP + V+ ++ +DL+GPI+ ++ G
Sbjct: 105 YIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGATL 164
Query: 130 LLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSL 189
LLAGK+QFG + G + + ++ + N+++ + + SV+GYC+LP+VIL+ ++
Sbjct: 165 LLAGKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCAM 222
Query: 190 FLPQGGAIRFAVSAVFVLWAARASTNLMVS 219
F G S V + W + +++ + ++
Sbjct: 223 FFSLQGIFGIMSSLVIIGWCSLSASKIFIA 252
>sp|Q66KA5|YIPF5_XENTR Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1
Length = 256
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 62 PISTSTSAGGSASFDDEEPLLDELGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIV 120
P +T + G ++FDDE PLL+ELGI+ D IW+KT ++L+P +V + + +DL+GP+V
Sbjct: 74 PAATDSVYG--STFDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGNIMNETDLAGPMV 131
Query: 121 LYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLP 180
L+FG LLAGK+QFG + G + + +Y + N+++ + +SV+GYC+LP
Sbjct: 132 FCLAFGATLLLAGKIQFGYVYGISAIGCLGMYCLLNLMSMT--GVSFGCVSSVLGYCLLP 189
Query: 181 VVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVS-LADGGEE 226
++IL++F++ G + ++A+ + W + +++ + +S LA G++
Sbjct: 190 MIILSSFAVIFSLQGILGIVLAALIIGWCSFSASKIFISALAMDGQQ 236
>sp|Q4R5M4|YIPF5_MACFA Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1
Length = 257
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 116/204 (56%), Gaps = 19/204 (9%)
Query: 27 RRVPTAPFQPNRPASSAI--PFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDE 84
R VP QP +P + I P ++ S P YG SF+DE PLL+E
Sbjct: 49 RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-YGN------------SFEDEPPLLEE 95
Query: 85 LGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
LGI+ D IW+KT ++L+P +V + ++ +DL+GP+V L+FG LLAGK+QFG + G
Sbjct: 96 LGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGI 155
Query: 144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
+ + ++ + N+++ + SV+GYC+LP+++L++F++ G + ++A
Sbjct: 156 SAIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTA 213
Query: 204 VFVLWAARASTNLMVS-LADGGEE 226
+ W + +++ + +S LA G++
Sbjct: 214 GIIGWCSFSASKIFISALAMEGQQ 237
>sp|Q5R6W5|YIPF5_PONAB Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1
Length = 257
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 116/204 (56%), Gaps = 19/204 (9%)
Query: 27 RRVPTAPFQPNRPASSAI--PFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDE 84
R VP QP +P + I P ++ S P YG +F+DE PLL+E
Sbjct: 49 RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-YGN------------NFEDEPPLLEE 95
Query: 85 LGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
LGI+ D IW+KT ++L+P +V + ++ +DL+GP+V L+FG LLAGK+QFG + G
Sbjct: 96 LGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGI 155
Query: 144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
+ + ++ + N+++ + SV+GYC+LP+++L++F++ G + ++A
Sbjct: 156 SAIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTA 213
Query: 204 VFVLWAARASTNLMVS-LADGGEE 226
+ W + +++ + +S LA G++
Sbjct: 214 GIIGWCSFSASKIFISALAMEGQQ 237
>sp|Q969M3|YIPF5_HUMAN Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1
Length = 257
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 116/204 (56%), Gaps = 19/204 (9%)
Query: 27 RRVPTAPFQPNRPASSAI--PFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDE 84
R VP QP +P + I P ++ S P YG +F+DE PLL+E
Sbjct: 49 RFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-YGN------------NFEDEPPLLEE 95
Query: 85 LGIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGW 143
LGI+ D IW+KT ++L+P +V + ++ +DL+GP+V L+FG LLAGK+QFG + G
Sbjct: 96 LGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGI 155
Query: 144 IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSA 203
+ + ++ + N+++ + SV+GYC+LP+++L++F++ G + ++A
Sbjct: 156 SAIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTA 213
Query: 204 VFVLWAARASTNLMVS-LADGGEE 226
+ W + +++ + +S LA G++
Sbjct: 214 GIIGWCSFSASKIFISALAMEGQQ 237
>sp|Q5E9E8|YIPF5_BOVIN Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1
Length = 257
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 114/202 (56%), Gaps = 15/202 (7%)
Query: 27 RRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDEEPLLDELG 86
R VP QP +P + I + TP + G +F+DE PLL+ELG
Sbjct: 49 RFVPADMMQPQQPYTGQIFQPTQTYTPTTPQPFYGN-----------NFEDEPPLLEELG 97
Query: 87 IHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIV 145
I+ D IW+KT ++L+P +V + ++ +DL+GP+V L+FG LLAGK+QFG + G
Sbjct: 98 INFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISA 157
Query: 146 VSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVF 205
+ + ++ + N+++ + SV+GYC+LP+++L++F++ G + ++A
Sbjct: 158 IGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGI 215
Query: 206 VLWAARASTNLMVS-LADGGEE 226
+ W + +++ + +S LA G++
Sbjct: 216 IGWCSFSASKIFISALAMEGQQ 237
>sp|Q6P5I8|YIPF5_DANRE Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1
Length = 257
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 96/154 (62%), Gaps = 4/154 (2%)
Query: 75 FDDEEPLLDELGIHPDQIWKKTKSILNPFRVNP-TVHKGSDLSGPIVLYLSFGLFQLLAG 133
F+DE PLL+ELGI+ D IW+KT ++L+P + + ++ +DL+GP+V L+FG LL G
Sbjct: 86 FEDEPPLLEELGINFDHIWQKTLTVLHPLKASDGSIMNETDLAGPMVFCLAFGATLLLTG 145
Query: 134 KLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ 193
K+QFG + G + + +Y + N+++ + SV+GYC+LP++IL++F +
Sbjct: 146 KIQFGYVYGISAIGCLGMYCLLNLMSMT--GVSFGCVASVLGYCLLPMIILSSFGVIFSL 203
Query: 194 GGAIRFAVSAVFVLWAARASTNLMVS-LADGGEE 226
G + ++A + W + +++ + +S LA G++
Sbjct: 204 QGIMGIILTAAIIGWCSLSASKIFISALAMDGQQ 237
>sp|Q54QY3|YIPF5_DICDI Protein YIPF5 homolog OS=Dictyostelium discoideum GN=yipf5 PE=3
SV=1
Length = 212
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQL 130
+ SFD+E PLL+ELGI+ D I KT S+LNP + ++ + +DL GPI+ L G L
Sbjct: 38 TDSFDNELPLLEELGINFDHIRSKTLSVLNPLKKIDSHIMDDTDLGGPILFGLLLGFSLL 97
Query: 131 LAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
++GK+QFG I G ++ + +Y+V N+++ + +D++ SV+GYC+LP++ L+ SL
Sbjct: 98 MSGKIQFGYIYGLGLIGCVSMYIVLNLMSEK--GIDIYRVISVLGYCLLPMIFLSFTSLI 155
Query: 191 LPQGGAIRFAVSAVFVLWAARASTNLMVSL 220
+ G + + + ++W+ +++ + V +
Sbjct: 156 ININGMVGYILIGFAIVWSTYSASKMFVKV 185
>sp|Q5XID0|YIPF5_RAT Protein YIPF5 OS=Rattus norvegicus GN=Yipf5 PE=2 SV=1
Length = 257
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 88/143 (61%), Gaps = 4/143 (2%)
Query: 86 GIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWI 144
GI+ D IW+KT ++L+P R + ++ +DL+GP+V L+FG LLAGK+QFG + G
Sbjct: 97 GINFDHIWQKTLTVLHPLRASDGSIMNETDLAGPVVFCLAFGATLLLAGKIQFGYVYGIS 156
Query: 145 VVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAV 204
+ + ++ + N+++ + SV+GYC+LP+++L++F++ G + ++A
Sbjct: 157 AIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVVFSLQGMVGILLTAT 214
Query: 205 FVLWAARASTNLMVS-LADGGEE 226
+ W + +++ + +S LA G++
Sbjct: 215 IIGWCSFSASKIFISALAMDGQQ 237
>sp|Q9EQQ2|YIPF5_MOUSE Protein YIPF5 OS=Mus musculus GN=Yipf5 PE=2 SV=1
Length = 257
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 88/143 (61%), Gaps = 4/143 (2%)
Query: 86 GIHPDQIWKKTKSILNPFRV-NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWI 144
GI+ D IW+KT ++L+P R + ++ +DL+GP+V L+FG LLAGK+QFG + G
Sbjct: 97 GINFDHIWQKTLTVLHPLRAADGSIMNETDLAGPVVFCLAFGATLLLAGKIQFGYVYGIS 156
Query: 145 VVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAV 204
+ + ++ + N+++ + SV+GYC+LP+++L++F++ G + ++A
Sbjct: 157 AIGCLGMFCLLNLMSMT--GVSFGCVASVLGYCLLPMILLSSFAVVFSLQGMVGILLTAT 214
Query: 205 FVLWAARASTNLMVS-LADGGEE 226
+ W + +++ + +S LA G++
Sbjct: 215 IIGWCSFSASKIFISALAMDGQQ 237
>sp|O94348|YIP1_SCHPO Protein transport protein yip1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=yip1 PE=3 SV=1
Length = 227
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 48 SFDIGSATPASYGGPISTSTSAGGSASFDD-----EEPLLDELGIHPDQIWKKTKSILNP 102
SF+ S Y P+ S G A+F E LL+EL I+ I +KT +LNP
Sbjct: 22 SFNTQSRAAGFYDEPLHEPLSQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNP 81
Query: 103 FR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGR 161
F+ V+ + +D++GPI+ L F F L G+ FG I G ++ S+ L+ V +++ +
Sbjct: 82 FKHVDVHIMDDTDMAGPILFCLLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMSAK 141
Query: 162 NGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSL 220
NL SV+GY +LP+V++A F G +A++A+ +W A++ + V +
Sbjct: 142 --NLFFTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGI 198
>sp|A5D7K7|YIPF7_BOVIN Protein YIPF7 OS=Bos taurus GN=YIPF7 PE=2 SV=1
Length = 255
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 86 GIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWI 144
GI+ D IW+KT ++LNP + + ++ +DL+GPI+ ++ G LLAGK+QFG + G
Sbjct: 95 GINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCMALGATLLLAGKVQFGYVYGMS 154
Query: 145 VVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAV 204
+ + ++ + N+++ + + SV+GYC+LP+VIL++ ++F G + V
Sbjct: 155 AIGCLGIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSSCAIFFSLQGTFGTVSALV 212
Query: 205 FVLWAARASTNLMVS-LADGGEE 226
+ W + +++ + S LA G++
Sbjct: 213 IIGWCSLSASKIFTSALAMEGQQ 235
>sp|P53039|YIP1_YEAST Protein transport protein YIP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIP1 PE=1 SV=1
Length = 248
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 9/169 (5%)
Query: 72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFR----VNPTVHKGSDLSGPIVLYLSFGL 127
+ + E PLL+E+GI+ D I KTK +L P R V + SDL+GP++ +L FGL
Sbjct: 64 TKGYPHEPPLLEEIGINFDHIITKTKMVLIPIRFGSGVPQEILNDSDLAGPLIFFLLFGL 123
Query: 128 FQLLAGKLQFGVILGWIVVSSIFLYVVFNMLAGRN----GNLDLHTCTSVVGYCMLPVVI 183
F L+AGK+ FG I G + +I L+ + +++ + NL S++GYC LP+
Sbjct: 124 FLLMAGKVHFGYIYGVALFGTISLHNLSKLMSNNDTSTQTNLQFFNTASILGYCFLPLCF 183
Query: 184 LAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIA 232
L+ +F + VS +FV+W+ S+ + SL + R LIA
Sbjct: 184 LSLLGIFHGLNNTTGYVVSVLFVIWSTWTSSGFLNSLLQ-LQNARLLIA 231
>sp|Q5ZJD7|YIPF4_CHICK Protein YIPF4 OS=Gallus gallus GN=YIPF4 PE=2 SV=1
Length = 249
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 76 DDEEPLLDELGIHPDQIWKKTKSILNPFRV----NPTVHKGSDLSGPIVLYLSFGLFQLL 131
+D +PLL+EL I I+ K + +L P V D GP+ + L F + L
Sbjct: 77 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 136
Query: 132 AGKLQFGVILGWIVVSSIFLYVVFNMLAG-RNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
QF V+ WI+ IF + +LA G + V+GY +LP++++A L
Sbjct: 137 G---QFKVV-SWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPVLLV 192
Query: 191 LPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHR 228
+ + + V WAA ++ +L+V GEE +
Sbjct: 193 VGSFEVVSTLIKLFGVFWAAYSAASLLV-----GEEFK 225
>sp|Q5M7T4|YIPF4_RAT Protein YIPF4 OS=Rattus norvegicus GN=Yipf4 PE=2 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 76 DDEEPLLDELGIHPDQIWKKTKSILNPFRV----NPTVHKGSDLSGPIVLYLSFGLFQLL 131
+D +PLL+EL I I+ K + +L P V D GP+ + L F + L
Sbjct: 74 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 133
Query: 132 AGKLQFGVILGWIVVSSIFLYVVFNMLAG-RNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
QF V+ WI+ IF + +LA G + V+GY +LP++++A L
Sbjct: 134 G---QFRVV-SWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLV 189
Query: 191 LPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHR 228
+ + + V WAA ++ +L+V GEE +
Sbjct: 190 VGSFEMVSTLIKLFGVFWAAYSAASLLV-----GEEFK 222
>sp|Q8C407|YIPF4_MOUSE Protein YIPF4 OS=Mus musculus GN=Yipf4 PE=2 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 76 DDEEPLLDELGIHPDQIWKKTKSILNPFRV----NPTVHKGSDLSGPIVLYLSFGLFQLL 131
+D +PLL+EL I I+ K + +L P V D GP+ + L F + L
Sbjct: 74 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 133
Query: 132 AGKLQFGVILGWIVVSSIFLYVVFNMLAG-RNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
QF V+ WI+ IF + +LA G + V+GY +LP++++A L
Sbjct: 134 G---QFRVV-SWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPILLV 189
Query: 191 LPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHR 228
+ + + V WAA ++ +L+V GEE +
Sbjct: 190 VGSFEMVSTLIKLFGVFWAAYSAASLLV-----GEEFK 222
>sp|Q9BSR8|YIPF4_HUMAN Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1
Length = 244
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 76 DDEEPLLDELGIHPDQIWKKTKSILNPFRV----NPTVHKGSDLSGPIVLYLSFGLFQLL 131
+D +PLL+EL I I+ K + +L P V D GP+ + L F + L
Sbjct: 72 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 131
Query: 132 AGKLQFGVILGWIVVSSIFLYVVFNMLAG-RNGNLDLHTCTSVVGYCMLPVVILAAFSLF 190
QF V+ WI+ IF + +LA G + V+GY +LP++++A L
Sbjct: 132 G---QFRVV-SWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPVLLV 187
Query: 191 LPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHR 228
+ + + V WAA ++ +L+V GEE +
Sbjct: 188 VGSFEVVSTLIKLFGVFWAAYSAASLLV-----GEEFK 220
>sp|Q6NYF1|YIPF4_DANRE Protein YIPF4 OS=Danio rerio GN=yipf4 PE=2 SV=1
Length = 237
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 77 DEEPLLDELGIHPDQIWKKTKSILNPFRV----NPTVHKGSDLSGPIVLYLSFGLFQLLA 132
D +PLL+EL I I+ K + +L P V D GP+ + L F + +
Sbjct: 66 DTKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLLFSMISIYG 125
Query: 133 GKLQFGVILGWIVVSSIFLYVVFNMLAG-RNGNLDLHTCTSVVGYCMLPVVILAAFSLFL 191
QF V+ WI+ IF + +LA G + V+GY +LP++++A L +
Sbjct: 126 ---QFRVV-SWIITIWIFGSLTIFLLARVLGGEVSYGQVLGVIGYSLLPLIVIAPLLLVI 181
Query: 192 PQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHR 228
+ + V WAA ++ +L+V G+E +
Sbjct: 182 GGFEVVSTLIKLFGVFWAAYSAASLLV-----GDEFK 213
>sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1
Length = 233
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 29/183 (15%)
Query: 71 GSASFDDEEPLLDELGIHPDQIWKKTKSILNPF------RVNPTVHKGSDLSGPIVLYLS 124
S S +D+ LDE D I + K++ N F + + T+ + DL GP+VL +S
Sbjct: 39 ASTSQEDDLSTLDE--PVKDTIMRDLKAVGNKFLHVMYPKKSTTLLRDWDLWGPLVLCVS 96
Query: 125 FGLFQLLAGKL--------QFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGY 176
L L G QF + I ++ + + +L G + V+GY
Sbjct: 97 LAL-MLQGGNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLLGG---TISFFQSLCVLGY 152
Query: 177 CMLPV---VILAAFSLFLPQGGA---IRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL 230
C+LP+ +++ L L A +R V V W+ AST LAD +R
Sbjct: 153 CILPLTVAMLVCRLVLLLSHTTASFIVRLVVVTVMFAWSTFASTAF---LADSQPPNRRA 209
Query: 231 IAL 233
+A+
Sbjct: 210 LAV 212
>sp|Q4QQU5|YIPF6_RAT Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 SV=1
Length = 236
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 94 KKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLF--------QLLAGKLQFGVILGWIV 145
+K +L P + N T+ + DL GP++L +S L + G +F + I
Sbjct: 71 RKFMHVLYPRKSN-TLLRDWDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVIIW 129
Query: 146 VSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLP--VVILAAFSLFLPQGGAIRFAVSA 203
++ + + +L G N+ V+GYC+LP + +L L L G I F +
Sbjct: 130 FGAVTITLNSKLLGG---NISFFQSLCVLGYCVLPLNIAMLICRLLLLAGQGPINFMIRL 186
Query: 204 VFVL----WAARASTNLMVSLADGGEEHRGLIAL 233
VL W+ AST LAD +R +A+
Sbjct: 187 FVVLVMFAWSVIASTAF---LADCQPPNRKALAV 217
>sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1
Length = 236
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 94 KKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGKL--------QFGVILGWIV 145
KK +L P + N T+ + DL GP++L ++ L L G + QF + +
Sbjct: 71 KKFMHVLYPRKSN-TLLRDWDLWGPLILCVTLAL-MLQRGSVDSEKDGGPQFAEVFVIVW 128
Query: 146 VSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVV--ILAAFSLFLPQGGAIRFAVSA 203
++ + + +L G N+ V+GYC+LP+ +L + L + G + F V
Sbjct: 129 FGAVTITLNSKLLGG---NISFFQSLCVLGYCILPLTMAMLVCRLVLLAEPGPVNFMVRL 185
Query: 204 VFVL----WAARASTNLMVSLADGGEEHRGLIAL 233
V+ W+ AST LAD +R +A+
Sbjct: 186 FVVIIMFAWSIVASTAF---LADSQPPNRKALAV 216
>sp|Q96EC8|YIPF6_HUMAN Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2
Length = 236
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 94 KKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLF-------QLLAGKLQFGVILGWIVV 146
KK +L P + N T+ + DL GP++L ++ L G QF + +
Sbjct: 71 KKFMHVLYPRKSN-TLLRDWDLWGPLILCVTLALMLQRDSADSEKDGGPQFAEVFVIVWF 129
Query: 147 SSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLP--VVILAAFSLFLPQGGAIRFAVSAV 204
++ + + +L G N+ V+GYC+LP V +L + L G + F V
Sbjct: 130 GAVTITLNSKLLGG---NISFFQSLCVLGYCILPLTVAMLICRLVLLADPGPVNFMVRLF 186
Query: 205 FVL----WAARASTNLMVSLADGGEEHRGLIAL 233
V+ W+ AST LAD +R +A+
Sbjct: 187 VVIVMFAWSIVASTAF---LADSQPPNRRALAV 216
>sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1
Length = 236
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 94 KKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLA--------GKLQFGVILGWIV 145
+K +L P + N + + DL GP++L ++ L + G +F + I
Sbjct: 71 RKFMHVLYPRKSNALL-RDWDLWGPLILCVTLALMLQKSSIDGKNDGGGPEFAEVFVIIW 129
Query: 146 VSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLP--VVILAAFSLFLPQGGAIRFAVSA 203
++ + + +L G N+ V+GYC+LP + +L L L G I F +
Sbjct: 130 FGAVTITLNSKLLGG---NISFFQSLCVLGYCILPLNIAMLICRLLLLAGQGPINFMIRL 186
Query: 204 VFVL----WAARASTNLMVSLADGGEEHRGLIAL 233
VL W+ AST LAD +R +A+
Sbjct: 187 FVVLLMFAWSVVASTAF---LADSQPPNRKALAV 217
>sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1
Length = 240
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 20/164 (12%)
Query: 78 EEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLF-------QL 130
+EP+ D + + +K ++ P + + + + DL GP++L ++ L
Sbjct: 58 DEPVKDTILRDLRAVGQKFVHVMYP-KKSSALLRDWDLWGPLLLCVTLALMLQGGSADSE 116
Query: 131 LAGKLQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLP--VVILAAFS 188
G+ QF + I S+ + + +L G + V+GYC+LP V ++
Sbjct: 117 EDGRPQFAEVFVIIWFGSVIITLNSKLLGG---TISFFQSLCVLGYCILPLTVAMIVCRI 173
Query: 189 LFLPQGGAIRFAVSAVFVL----WAARASTNLMVSLADGGEEHR 228
+ L G + FAV + V W+ AST LAD +R
Sbjct: 174 VLLGGSGVVSFAVRLIVVTASFSWSTFASTAF---LADSQPTNR 214
>sp|Q8XJ28|SYD_CLOPE Aspartate--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=aspS PE=3 SV=1
Length = 597
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 39 PASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDD---EEPLLDELGIHPDQIWKK 95
P I ++ D G +Y ++ GGS D +E + + LG + W++
Sbjct: 460 PMDEDIKYLDTDPGRVRAKAYDLVLNGEELGGGSIRIHDTKLQEKMFEVLGFTQESAWER 519
Query: 96 TKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQL---LAGKLQFGVILGWIVVSSIFLY 152
+L F+ P H G L+FGL ++ LAG ++ + + F Y
Sbjct: 520 FGFLLEAFKFGPPPHGG----------LAFGLDRMIMFLAGTENIKDVITFPKNQNAFCY 569
Query: 153 VV 154
+
Sbjct: 570 LT 571
>sp|Q0TP28|SYD_CLOP1 Aspartate--tRNA ligase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=aspS PE=3 SV=1
Length = 597
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 39 PASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDD---EEPLLDELGIHPDQIWKK 95
P I ++ D G +Y ++ GGS D +E + + LG + W++
Sbjct: 460 PMDEDIKYLDTDPGRVRAKAYDLVLNGEELGGGSIRIHDTKLQEKMFEVLGFTQESAWER 519
Query: 96 TKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQL---LAGKLQFGVILGWIVVSSIFLY 152
+L F+ P H G L+FGL ++ LAG ++ + + F Y
Sbjct: 520 FGFLLEAFKFGPPPHGG----------LAFGLDRMIMFLAGTENIKDVITFPKNQNAFCY 569
Query: 153 VV 154
+
Sbjct: 570 LT 571
>sp|Q0SRP8|SYD_CLOPS Aspartate--tRNA ligase OS=Clostridium perfringens (strain SM101 /
Type A) GN=aspS PE=3 SV=1
Length = 597
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 39 PASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDD---EEPLLDELGIHPDQIWKK 95
P I ++ D G +Y ++ GGS D +E + + LG + W++
Sbjct: 460 PMDEDIKYLDTDPGRVRAKAYDLVLNGEELGGGSIRIHDTKLQEKMFEVLGFTQESAWER 519
Query: 96 TKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQL---LAGKLQFGVILGWIVVSSIFLY 152
+L F+ P H G L+FGL ++ LAG ++ + + F Y
Sbjct: 520 FGFLLEAFKFGPPPHGG----------LAFGLDRMIMFLAGTENIKDVITFPKNQNAFCY 569
Query: 153 VV 154
+
Sbjct: 570 LT 571
>sp|P36003|NNK1_YEAST Nitrogen network kinase 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NNK1 PE=1 SV=1
Length = 928
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 27/59 (45%)
Query: 20 TAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDDE 78
T N N V T P Q +R S A F+S S T + S SAGGSA DD+
Sbjct: 384 TPNNSNDTYVNTRPLQRSRHGSIASQFLSSFSPSMTSIAKMNSNPLSGSAGGSARPDDK 442
>sp|Q0MVN8|QOR_PIG Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1
Length = 329
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 102 PFRVNP--TVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWI 144
P +NP T+ KGS + G + + FQ LA LQ G+ +GW+
Sbjct: 251 PIEINPRDTMTKGSSIKGVALYSSTKEEFQQLAAALQAGMEVGWL 295
>sp|Q892B2|SYD_CLOTE Aspartate--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=aspS PE=3 SV=1
Length = 592
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 39 PASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDD---EEPLLDELGIHPDQIWKK 95
P I ++ D G +Y ++ GGS D +E + + LG ++ W++
Sbjct: 461 PMDEDIQYLDTDPGKVRAKAYDIVLNGEELGGGSIRIHDTKLQEKMFEVLGFTEEKAWER 520
Query: 96 TKSILNPFRVNPTVHKG 112
+L F+ P H G
Sbjct: 521 FGFLLEAFKFGPPPHGG 537
>sp|Q06836|SYT1_YEAST Arf guanine nucleotide exchange factor SYT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SYT1 PE=1
SV=1
Length = 1226
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 1 MTKEFSVPPVVFP-------SGGNPTTA--------GNINQRRVPTAPFQPNRPASSAI 44
+ KE S+ P+ +P SG P+TA G IN + TA NRPAS++I
Sbjct: 671 IPKEASLSPIFYPLTNSISASGIAPSTAASCPPSTSGTINGANLGTANSNSNRPASNSI 729
>sp|Q97GU6|SYD_CLOAB Aspartate--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=aspS PE=3 SV=1
Length = 595
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 18 PTTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPASYGGPISTSTSAGGSASFDD 77
P + N + R P I ++ D G +Y ++ GGS D
Sbjct: 439 PLLSYNEEEERFQAEHHPFTMPMDEDIEYLESDPGRVRAKAYDIVLNGEELGGGSVRIHD 498
Query: 78 ---EEPLLDELGIHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLL 131
+E + LG + W++ +L F+ P H G L++GL +L+
Sbjct: 499 TALQERMFKVLGFTKESAWERFSFLLEAFKFGPPPHAG----------LAYGLDRLI 545
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,041,449
Number of Sequences: 539616
Number of extensions: 3900079
Number of successful extensions: 10311
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 10246
Number of HSP's gapped (non-prelim): 60
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)