Query 026709
Match_columns 234
No_of_seqs 134 out of 387
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3103 Rab GTPase interacting 100.0 8.6E-60 1.9E-64 414.7 17.5 217 7-233 6-234 (249)
2 COG5080 YIP1 Rab GTPase intera 100.0 6.9E-46 1.5E-50 322.0 12.4 159 72-233 52-211 (227)
3 KOG2946 Uncharacterized conser 100.0 1.4E-43 3E-48 309.6 15.3 158 70-233 52-217 (234)
4 KOG3114 Uncharacterized conser 98.9 2E-09 4.4E-14 98.6 7.0 120 85-206 84-229 (290)
5 PF04893 Yip1: Yip1 domain; I 98.6 8.9E-08 1.9E-12 77.4 6.5 132 87-229 3-159 (172)
6 PF03878 YIF1: YIF1; InterPro 97.1 0.0017 3.7E-08 58.5 7.9 134 81-221 39-197 (240)
7 KOG3094 Predicted membrane pro 96.3 0.049 1.1E-06 50.0 11.0 142 74-221 79-244 (284)
8 COG5197 Predicted membrane pro 87.4 8.3 0.00018 35.2 10.6 112 78-190 80-216 (284)
9 PF06930 DUF1282: Protein of u 86.2 1 2.2E-05 37.7 4.0 72 152-229 84-156 (170)
10 PF06691 DUF1189: Protein of u 58.1 28 0.00061 30.8 5.9 27 164-190 196-223 (250)
11 PF06966 DUF1295: Protein of u 53.8 39 0.00085 29.9 6.1 56 174-229 16-71 (235)
12 PF06570 DUF1129: Protein of u 40.3 52 0.0011 28.4 4.6 66 140-205 116-190 (206)
13 PHA00007 E cell lysis protein 29.0 45 0.00098 25.8 2.1 20 110-129 1-20 (91)
14 PLN02248 cellulose synthase-li 28.6 3.3E+02 0.0072 30.2 9.1 94 136-232 981-1101(1135)
15 PF02061 Lambda_CIII: Lambda P 27.7 20 0.00043 24.5 -0.0 30 73-102 12-41 (45)
16 PF15190 DUF4583: Domain of un 23.4 48 0.001 27.5 1.4 16 173-188 95-110 (128)
17 PF03839 Sec62: Translocation 21.8 66 0.0014 29.0 2.1 17 185-202 148-164 (224)
18 KOG4580 Component of vacuolar 21.6 70 0.0015 26.0 2.0 19 114-132 84-102 (112)
19 KOG1725 Protein involved in me 20.8 1E+02 0.0023 27.1 3.1 52 176-230 39-90 (186)
No 1
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-60 Score=414.69 Aligned_cols=217 Identities=41% Similarity=0.724 Sum_probs=192.3
Q ss_pred CCCcccCCCCC----C-----CCCCCCCCccCCCCCCCCCCCCCCCCCccccccCCCCCC--CCCCCCCCCCCCCCCCCC
Q 026709 7 VPPVVFPSGGN----P-----TTAGNINQRRVPTAPFQPNRPASSAIPFMSFDIGSATPA--SYGGPISTSTSAGGSASF 75 (234)
Q Consensus 7 ~p~~~~~~~~~----~-----~~~~~~~~~~~p~~~~q~~~~~~~~~~~~s~~~g~~~~~--~~~~~~~~~~~~g~~~~~ 75 (234)
.|+...|.-+| + .+..|.||||+|+.+.||++++ .+.+.+++++.+ .+++|++ +...-| +++
T Consensus 6 ~~~~~~~tn~~~d~s~~~q~~a~~d~~qqs~~p~~~~qP~~~~-----~g~~~~~~~a~t~~~~~~~~~-G~~a~~-~~~ 78 (249)
T KOG3103|consen 6 MPPANTPTNGNYDYSGFGQPYAGFDNEQQSRVPPSYAQPPVPY-----LGQFFIPSAAATGALPAQPFG-GTIASG-NDF 78 (249)
T ss_pred CCccccCcccccCCCCcCCcccccchhhhccCCCCccCCCcCC-----CCcccccccccccccccCCCC-Cccccc-cCC
Confidence 45566666653 1 1456789999999999999877 566888886553 2556665 333312 899
Q ss_pred CCCcchhhhhccCHHHHHhcccceeccCc-CCCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhHHHHHHHHHH
Q 026709 76 DDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIFLYVV 154 (234)
Q Consensus 76 ~~dePLleeLgiD~~~I~~Kl~~VL~P~~-~~~~il~d~DLwGPL~f~l~la~~Lll~gk~~Fg~Iygi~~~Gsi~l~~~ 154 (234)
|||||||||||||++|||+|+++||+|+| .+.++++|.||||||+||++|+++|+++||.||||||+|+.+||+.+|++
T Consensus 79 edEpPLLEELgInf~hI~~KT~~VLnP~r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi~~~gsl~iy~L 158 (249)
T KOG3103|consen 79 EDEPPLLEELGINFDHIKQKTRAVLNPFRSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGISLLGSLSIYFL 158 (249)
T ss_pred CCCCchHHHhCCCHHHHHHHHhheecccccCceEEecCcccccchHHHHHHHHHHHhcCceEEEEEeeeHHHHHHHHHHH
Confidence 99999999999999999999999999999 55889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEec
Q 026709 155 FNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGLIAL 233 (234)
Q Consensus 155 ~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WSt~aas~f~~~~~~~~~~kr~Li~Y 233 (234)
+|+|+. +|++|.+|+|||||||+|+|++|.++++++..+.+|+++++++++||||+||++|+.+. ++++||.|++|
T Consensus 159 ~nlm~~--~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al-~~~~~rlLiaY 234 (249)
T KOG3103|consen 159 LNLMSN--KNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSAL-SMENQRLLVAY 234 (249)
T ss_pred HHHHhh--cCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh-hccccchhhhh
Confidence 999994 46999999999999999999999999999999999999999999999999999999977 89999999998
No 2
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.9e-46 Score=321.99 Aligned_cols=159 Identities=29% Similarity=0.546 Sum_probs=149.9
Q ss_pred CCCCCCCcchhhhhccCHHHHHhcccceeccCc-CCCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhHHHHHH
Q 026709 72 SASFDDEEPLLDELGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIVVSSIF 150 (234)
Q Consensus 72 ~~~~~~dePLleeLgiD~~~I~~Kl~~VL~P~~-~~~~il~d~DLwGPL~f~l~la~~Lll~gk~~Fg~Iygi~~~Gsi~ 150 (234)
.|.++.|||++|||+||+.+|++|+..|+.|++ .+.++++||||||||+||+++++.|++++|.||||||++.|+|.++
T Consensus 52 ~g~~p~d~pLleel~i~F~~i~~ks~~vl~p~~~~~~~i~~d~DL~gPliF~lL~sLfLsla~~shFgyiy~islfg~ls 131 (227)
T COG5080 52 RGVYPGDPPLLEELGINFGHIKSKSDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYGISLFGTLS 131 (227)
T ss_pred cCCCCCCccHHHHhcccccccccccceeeecccccchhhhhcccccccHHHHHHHHHHHHhcccceeehhhHHHHHHHHH
Confidence 467999999999999999999999999999987 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEE
Q 026709 151 LYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL 230 (234)
Q Consensus 151 l~~~~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WSt~aas~f~~~~~~~~~~kr~L 230 (234)
+++++|||+.+ ||+|++++||+|||+||+|+.|+++.++.+......+++.+|.+||+|||+.++++.. ++++||.|
T Consensus 132 l~~~lrLl~~~--ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l-~l~n~~ll 208 (227)
T COG5080 132 LHLLLRLLGHK--NISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKL-QLSNKRLL 208 (227)
T ss_pred HHHHHHHhccC--ceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 99999999955 5999999999999999999999999999986677777777799999999999999888 89999999
Q ss_pred Eec
Q 026709 231 IAL 233 (234)
Q Consensus 231 i~Y 233 (234)
++|
T Consensus 209 v~Y 211 (227)
T COG5080 209 VVY 211 (227)
T ss_pred HHH
Confidence 988
No 3
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-43 Score=309.56 Aligned_cols=158 Identities=21% Similarity=0.379 Sum_probs=145.7
Q ss_pred CCCCCCCCCcchhhhhccCHHHHHhcccceeccC---cCCCCCCCCCcchhhHHHHHHHHHHHHhhcc----ceeeeeee
Q 026709 70 GGSASFDDEEPLLDELGIHPDQIWKKTKSILNPF---RVNPTVHKGSDLSGPIVLYLSFGLFQLLAGK----LQFGVILG 142 (234)
Q Consensus 70 g~~~~~~~dePLleeLgiD~~~I~~Kl~~VL~P~---~~~~~il~d~DLwGPL~f~l~la~~Lll~gk----~~Fg~Iyg 142 (234)
.+++++++|||+||||+||+.+|+.|+++|++|+ +++.+++||||||||+.||+.+|++|++++. .+|+.+|.
T Consensus 52 ~~~e~dTldePv~~tlkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~ 131 (234)
T KOG2946|consen 52 EVNEEDTLDEPVLETLKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFA 131 (234)
T ss_pred ccCCCCcccchHHHHHHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHH
Confidence 5789999999999999999999999999999997 4677899999999999999999999999873 48999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026709 143 WIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAF-SLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLA 221 (234)
Q Consensus 143 i~~~Gsi~l~~~~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli-~~f~~~~~~~~~il~~~~v~WSt~aas~f~~~~~ 221 (234)
++|+|.+++|+|+|||||+ |+|+|++|++||||+|+++.|++ +++-.+ ..+|+++..++.+||+|+|..++....
T Consensus 132 i~wfG~~vvtln~kLLGgn---Is~fQsl~IlGYCLfPl~v~ali~~~~~~l-~~lr~vv~~~~~~WSsyaa~~~l~~~~ 207 (234)
T KOG2946|consen 132 ILWFGAVVVTLNIKLLGGN---ISFFQSLCILGYCLFPLVVAALIICLFRDL-FFLRLVVTSIGLAWSSYAAMGFLSISQ 207 (234)
T ss_pred HHHHHHHHHHHHHHHhCCc---eeEEeehhhhhhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999986 99999999999999999999844 555555 899999999999999999999999976
Q ss_pred cCCCCceEEEec
Q 026709 222 DGGEEHRGLIAL 233 (234)
Q Consensus 222 ~~~~~kr~Li~Y 233 (234)
+ .+||.|++|
T Consensus 208 ~--~~kk~LavY 217 (234)
T KOG2946|consen 208 L--PRKKLLAVY 217 (234)
T ss_pred c--ccccceehh
Confidence 4 689999998
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2e-09 Score=98.56 Aligned_cols=120 Identities=15% Similarity=0.287 Sum_probs=89.8
Q ss_pred hccCHHHHHhcccceeccCc-CCCCCCCCCcchhhHHHHHHHHHHHHhhcc-----------c-e-----------eeee
Q 026709 85 LGIHPDQIWKKTKSILNPFR-VNPTVHKGSDLSGPIVLYLSFGLFQLLAGK-----------L-Q-----------FGVI 140 (234)
Q Consensus 85 LgiD~~~I~~Kl~~VL~P~~-~~~~il~d~DLwGPL~f~l~la~~Lll~gk-----------~-~-----------Fg~I 140 (234)
+++|..++++|++.+|.|.+ ...++-+++||+||+++|.++.+.+..+|. - + +.+|
T Consensus 84 FdVDt~qV~~Rl~~SliP~~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~saa~~i 163 (290)
T KOG3114|consen 84 FDVDTAQVRKRLKESLIPRNYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTSAATLI 163 (290)
T ss_pred cCCCHHHHHHHHHHhcCCccccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHHHHHHH
Confidence 89999999999999999954 455677889999999999999999988742 1 2 3457
Q ss_pred eehhHHHHHHHHHHHHHhc-CCC-CccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 026709 141 LGWIVVSSIFLYVVFNMLA-GRN-GNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFV 206 (234)
Q Consensus 141 ygi~~~Gsi~l~~~~~LL~-g~~-~~Isf~q~~svLGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v 206 (234)
|+..|...+.++-.++..+ ++. ...+++..+|+.||+++.... .++...++. .+++.+++..+.
T Consensus 164 y~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip-~~vl~iv~~-~~~~wvl~~~~~ 229 (290)
T KOG3114|consen 164 YGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIP-LLVLWIVPS-SMVQWVLVGTAL 229 (290)
T ss_pred HHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHH-HHHHHhccH-HHHHHHHHHHHH
Confidence 7888888888888887776 111 236778899999999999888 444444444 455555544433
No 5
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=98.61 E-value=8.9e-08 Score=77.36 Aligned_cols=132 Identities=19% Similarity=0.316 Sum_probs=98.3
Q ss_pred cCHHHHHhcccceeccCcCCCCCCCCCcchhhHHHHHHHHHHHHhhcc-----------------ceee-----ee--ee
Q 026709 87 IHPDQIWKKTKSILNPFRVNPTVHKGSDLSGPIVLYLSFGLFQLLAGK-----------------LQFG-----VI--LG 142 (234)
Q Consensus 87 iD~~~I~~Kl~~VL~P~~~~~~il~d~DLwGPL~f~l~la~~Lll~gk-----------------~~Fg-----~I--yg 142 (234)
+|+++..+|++.- ++..+++|++++++.++.+...+...++ ..++ .+ ..
T Consensus 3 ~~P~~~f~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 75 (172)
T PF04893_consen 3 FSPREFFRRLRES-------PRISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILI 75 (172)
T ss_pred cCHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5666666666541 1145789999999999888887777621 1111 11 24
Q ss_pred hhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026709 143 WIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ-GGAIRFAVSAVFVLWAARASTNLMVSLA 221 (234)
Q Consensus 143 i~~~Gsi~l~~~~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~-~~~~~~il~~~~v~WSt~aas~f~~~~~ 221 (234)
.+.+.+..++...|+++|+ .++.++.|+.|||.+|.++..++..+... .......+..++.+|+.+.....+.+..
T Consensus 76 ~~~i~~~~~~~~~~~~gg~---~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~~ 152 (172)
T PF04893_consen 76 GWFILALILHLIAKLFGGK---GSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREVH 152 (172)
T ss_pred HHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777778888999987 88999999999999999999999876654 2334566788899999999999999988
Q ss_pred cCCCCceE
Q 026709 222 DGGEEHRG 229 (234)
Q Consensus 222 ~~~~~kr~ 229 (234)
+++++|.
T Consensus 153 -~~~~~ka 159 (172)
T PF04893_consen 153 -RLSRGKA 159 (172)
T ss_pred -CCChhHH
Confidence 6666664
No 6
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=97.15 E-value=0.0017 Score=58.52 Aligned_cols=134 Identities=18% Similarity=0.285 Sum_probs=98.2
Q ss_pred hhhhhccCHHHHHhcccceeccCcCC--------------CCCCCCCcchhhHHHHHHHHHHHHhh----cc-------c
Q 026709 81 LLDELGIHPDQIWKKTKSILNPFRVN--------------PTVHKGSDLSGPIVLYLSFGLFQLLA----GK-------L 135 (234)
Q Consensus 81 LleeLgiD~~~I~~Kl~~VL~P~~~~--------------~~il~d~DLwGPL~f~l~la~~Lll~----gk-------~ 135 (234)
+--=+.+|-.=|.+|++-++.|+... ++.++.+||.=|++-++++-++-.+. |+ .
T Consensus 39 lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~ 118 (240)
T PF03878_consen 39 LKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELLGI 118 (240)
T ss_pred ceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 33447899999999999999996511 34677899999999888887665443 33 2
Q ss_pred eeeeeeehhHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q 026709 136 QFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTN 215 (234)
Q Consensus 136 ~Fg~Iygi~~~Gsi~l~~~~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WSt~aas~ 215 (234)
.++...+++.+=.+++.+.+.+|+.+ .++++.-.+|..||-..++++..++.++... +. --+..+|.+.|..-
T Consensus 119 ~~s~al~~~~lEv~i~k~~~y~l~~~-~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~--~~----yy~~~ly~~~a~~~ 191 (240)
T PF03878_consen 119 QASSALVWWFLEVLIIKLGLYLLNIS-SSLPILDLVAYSGYKFVGIILTLLASLLFGS--WV----YYIALLYTSFANAF 191 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHhhcchHHHHHHHHHHHHHccc--HH----HHHHHHHHHHHHHH
Confidence 34455666666667777888888763 3599999999999999999888777766532 22 23467888888887
Q ss_pred HHHhhc
Q 026709 216 LMVSLA 221 (234)
Q Consensus 216 f~~~~~ 221 (234)
|+.+.+
T Consensus 192 Fl~RsL 197 (240)
T PF03878_consen 192 FLLRSL 197 (240)
T ss_pred HHHHHH
Confidence 777654
No 7
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=96.34 E-value=0.049 Score=49.98 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=88.3
Q ss_pred CCCCCcchhhhhccCHHHHHhcccceeccCcC--------------CCCCCCCCcchhhHHHHHHHHHHHHh----hcc-
Q 026709 74 SFDDEEPLLDELGIHPDQIWKKTKSILNPFRV--------------NPTVHKGSDLSGPIVLYLSFGLFQLL----AGK- 134 (234)
Q Consensus 74 ~~~~dePLleeLgiD~~~I~~Kl~~VL~P~~~--------------~~~il~d~DLwGPL~f~l~la~~Lll----~gk- 134 (234)
.+-.++-+--=+.+|-.=+.+|++-++.|+.. .++.++.+||.=|++-.+++-++.-+ .|+
T Consensus 79 k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~F 158 (284)
T KOG3094|consen 79 KYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRF 158 (284)
T ss_pred hhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCC
Confidence 33334444444778999999999999999651 12468889999999877776554333 333
Q ss_pred --ceeeeeeeh---hHHHHHHHHHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q 026709 135 --LQFGVILGW---IVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWA 209 (234)
Q Consensus 135 --~~Fg~Iygi---~~~Gsi~l~~~~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WS 209 (234)
..+++.+.= +|+-.++++.+...+-+.+...+....+|--||-..+++++.+..++.-- .+ -.+...|-
T Consensus 159 sPE~Lg~~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~---~~---yyi~~~yt 232 (284)
T KOG3094|consen 159 SPEALGILASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGP---YG---YYIALAYT 232 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecc---hh---HHHHHHHH
Confidence 234443322 22333333333333322223588899999999999999999888754421 12 23346677
Q ss_pred HHHHHHHHHhhc
Q 026709 210 ARASTNLMVSLA 221 (234)
Q Consensus 210 t~aas~f~~~~~ 221 (234)
+.|-.-|+.+.+
T Consensus 233 ~~a~gvFLlRSl 244 (284)
T KOG3094|consen 233 YLAFGVFLLRSL 244 (284)
T ss_pred HHHHHHHHHHHH
Confidence 777666777665
No 8
>COG5197 Predicted membrane protein [Function unknown]
Probab=87.43 E-value=8.3 Score=35.17 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred CcchhhhhccCHHHHHhcccceeccCcC-------C-------CCCCCCCcchhhHHHHHHHHHHHHhh-c-c-----ce
Q 026709 78 EEPLLDELGIHPDQIWKKTKSILNPFRV-------N-------PTVHKGSDLSGPIVLYLSFGLFQLLA-G-K-----LQ 136 (234)
Q Consensus 78 dePLleeLgiD~~~I~~Kl~~VL~P~~~-------~-------~~il~d~DLwGPL~f~l~la~~Lll~-g-k-----~~ 136 (234)
-.++-.-+.+|-+-+.+|++-+|.|++. | ++.++.+|+.=|++=..++-++.-.- | | ..
T Consensus 80 ~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~g~F~PE~ 159 (284)
T COG5197 80 SQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKGSFNPED 159 (284)
T ss_pred ccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhcccCCCHHH
Confidence 3455555788999999999999999761 2 24588899999999888776654432 2 2 45
Q ss_pred eeeeeehhHHHHHHHHHHHHHhcCC----CCccceeeeeeecccchHHHHHHHHHHHH
Q 026709 137 FGVILGWIVVSSIFLYVVFNMLAGR----NGNLDLHTCTSVVGYCMLPVVILAAFSLF 190 (234)
Q Consensus 137 Fg~Iygi~~~Gsi~l~~~~~LL~g~----~~~Isf~q~~svLGYcLlPlvi~sli~~f 190 (234)
||+.+.-...--.+-.+..+ +|+- +..-+|...+|.-||=..|++++.+.-.+
T Consensus 160 lg~~~s~~~a~v~v~~l~tr-lg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~ 216 (284)
T COG5197 160 LGYKLSSTLAFVCVDLLITR-LGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNV 216 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hceEEEeecccchhhhhhhhcccccHHHHHHHHhhhc
Confidence 66654433322222233333 3431 11244778899999999999999887644
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=86.22 E-value=1 Score=37.72 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=48.4
Q ss_pred HHHHHHhcCCCCccceeeeeeecccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCceE
Q 026709 152 YVVFNMLAGRNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGG-EEHRG 229 (234)
Q Consensus 152 ~~~~~LL~g~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WSt~aas~f~~~~~~~~-~~kr~ 229 (234)
+...+-.+++ -++-++.-..+|...|+.+..+++..... +.......++.+|+.+--.--..... +. |++|.
T Consensus 84 ~~~~~~~~~~---~s~~~~~~~a~y~~tPl~L~~i~~~~~~~--~l~~~~~~~~~~~~~~Lly~Gv~~~~-~i~~~~~~ 156 (170)
T PF06930_consen 84 HWMMKTFGGR---PSYKKCLAFAAYAATPLFLGGIVNLYPSL--WLTLLVGLIALIYSVYLLYLGVPIFM-NISEKERA 156 (170)
T ss_pred HHHHHHcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-CcCcccch
Confidence 4444444444 77889999999999999999988877653 44445566667777766555555555 45 33443
No 10
>PF06691 DUF1189: Protein of unknown function (DUF1189); InterPro: IPR009574 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.
Probab=58.06 E-value=28 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred ccceeeeeeecccch-HHHHHHHHHHHH
Q 026709 164 NLDLHTCTSVVGYCM-LPVVILAAFSLF 190 (234)
Q Consensus 164 ~Isf~q~~svLGYcL-lPlvi~sli~~f 190 (234)
.++|.++..+.-||. +|.++.+++..+
T Consensus 196 ~lsy~~~~ki~~yA~TlP~ll~~i~~~l 223 (250)
T PF06691_consen 196 KLSYKQLWKISIYAITLPTLLFAIIGLL 223 (250)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999998 555556666555
No 11
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=53.81 E-value=39 Score=29.90 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=38.6
Q ss_pred cccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceE
Q 026709 174 VGYCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRG 229 (234)
Q Consensus 174 LGYcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WSt~aas~f~~~~~~~~~~kr~ 229 (234)
+.|++.|.+++......-.....-+++++++.++|+.+=+..++.+.....||+|+
T Consensus 16 ~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~ 71 (235)
T PF06966_consen 16 ILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRY 71 (235)
T ss_pred CcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Confidence 35777766644444443333355567788888999999999999986655567764
No 12
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.26 E-value=52 Score=28.43 Aligned_cols=66 Identities=11% Similarity=0.250 Sum_probs=33.6
Q ss_pred eeehhHHHHHHHHHHHHHhcC---CCCccceeeeeeecccchHHHHHHHHHHHHhcc------hhhHHHHHHHHH
Q 026709 140 ILGWIVVSSIFLYVVFNMLAG---RNGNLDLHTCTSVVGYCMLPVVILAAFSLFLPQ------GGAIRFAVSAVF 205 (234)
Q Consensus 140 Iygi~~~Gsi~l~~~~~LL~g---~~~~Isf~q~~svLGYcLlPlvi~sli~~f~~~------~~~~~~il~~~~ 205 (234)
+.....+|.+++++..+.+.. ++....+...+.+.--.+....+.-.+..+++. ..++.+++++++
T Consensus 116 li~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~ 190 (206)
T PF06570_consen 116 LILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIA 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHH
Confidence 444556777888888888874 222345555444333333333333233333443 245555555444
No 13
>PHA00007 E cell lysis protein
Probab=29.01 E-value=45 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.4
Q ss_pred CCCCcchhhHHHHHHHHHHH
Q 026709 110 HKGSDLSGPIVLYLSFGLFQ 129 (234)
Q Consensus 110 l~d~DLwGPL~f~l~la~~L 129 (234)
++.|.|||=+.|.++++++|
T Consensus 1 Me~WTL~~~LAFLLLLSLlL 20 (91)
T PHA00007 1 MEHWTLSDTLAFLLLLSLLL 20 (91)
T ss_pred CceeeHHHHHHHHHHHHHHH
Confidence 46799999999999999875
No 14
>PLN02248 cellulose synthase-like protein
Probab=28.63 E-value=3.3e+02 Score=30.24 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=60.1
Q ss_pred eeeeeeehhHHHHHHHHHHHHHhcCCCCccceeeee--------------eeccc--chHHHHHHHHHHHHhcchhhHH-
Q 026709 136 QFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCT--------------SVVGY--CMLPVVILAAFSLFLPQGGAIR- 198 (234)
Q Consensus 136 ~Fg~Iygi~~~Gsi~l~~~~~LL~g~~~~Isf~q~~--------------svLGY--cLlPlvi~sli~~f~~~~~~~~- 198 (234)
+|-.|.+....-..++..++|+|++++ ++|--+- -..+. .+.|.+.+++++++--...+.|
T Consensus 981 q~W~I~~tSA~L~A~l~aiLKvLggs~--~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~ 1058 (1135)
T PLN02248 981 QFWLIGGTSAHLAAVLQGLLKVIAGIE--ISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRT 1058 (1135)
T ss_pred heeeehhhHHHHHHHHHHHHHHhcCcc--ccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666677888899999864 3332221 11122 4788888777765422213333
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEe
Q 026709 199 ----------FAVSAVFVLWAARASTNLMVSLADGGEEHRGLIA 232 (234)
Q Consensus 199 ----------~il~~~~v~WSt~aas~f~~~~~~~~~~kr~Li~ 232 (234)
.+..+++.+|..+.-.-|...++ .-++|+..++
T Consensus 1059 i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~-gR~gr~P~iv 1101 (1135)
T PLN02248 1059 IYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLM-GRRGRTPTIV 1101 (1135)
T ss_pred HhccCcchhhhHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCeeh
Confidence 33467889999999999999888 3366665554
No 15
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.72 E-value=20 Score=24.48 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCCCCCcchhhhhccCHHHHHhcccceecc
Q 026709 73 ASFDDEEPLLDELGIHPDQIWKKTKSILNP 102 (234)
Q Consensus 73 ~~~~~dePLleeLgiD~~~I~~Kl~~VL~P 102 (234)
+-..+.|+|||.+-|..++=|+|+-.+|+-
T Consensus 12 G~~ql~ESLLdrItRklr~gwKRl~~iLnQ 41 (45)
T PF02061_consen 12 GCPQLSESLLDRITRKLRDGWKRLWDILNQ 41 (45)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466789999999999999999999998873
No 16
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=23.41 E-value=48 Score=27.50 Aligned_cols=16 Identities=44% Similarity=0.980 Sum_probs=12.6
Q ss_pred ecccchHHHHHHHHHH
Q 026709 173 VVGYCMLPVVILAAFS 188 (234)
Q Consensus 173 vLGYcLlPlvi~sli~ 188 (234)
-+|||.+|++++.+-+
T Consensus 95 ~vgycv~P~cl~~~c~ 110 (128)
T PF15190_consen 95 TVGYCVIPVCLATLCS 110 (128)
T ss_pred hheeeeHHHHHHHHHh
Confidence 4799999999875543
No 17
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=21.77 E-value=66 Score=28.99 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=7.8
Q ss_pred HHHHHHhcchhhHHHHHH
Q 026709 185 AAFSLFLPQGGAIRFAVS 202 (234)
Q Consensus 185 sli~~f~~~~~~~~~il~ 202 (234)
+++.+|+.. .++|+++.
T Consensus 148 gll~~~~~l-aivRlilf 164 (224)
T PF03839_consen 148 GLLGLFFAL-AIVRLILF 164 (224)
T ss_pred HHHHHHHHH-HHHHHHHH
Confidence 344444433 45565553
No 18
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=70 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.3
Q ss_pred cchhhHHHHHHHHHHHHhh
Q 026709 114 DLSGPIVLYLSFGLFQLLA 132 (234)
Q Consensus 114 DLwGPL~f~l~la~~Lll~ 132 (234)
|-|||.++|..+-..+..+
T Consensus 84 d~~GP~~v~~vl~valivN 102 (112)
T KOG4580|consen 84 DRLGPTLVCVVLLVALIVN 102 (112)
T ss_pred CcccchHHHHHHHHHHHHH
Confidence 8999999999988877654
No 19
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.84 E-value=1e+02 Score=27.05 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEE
Q 026709 176 YCMLPVVILAAFSLFLPQGGAIRFAVSAVFVLWAARASTNLMVSLADGGEEHRGL 230 (234)
Q Consensus 176 YcLlPlvi~sli~~f~~~~~~~~~il~~~~v~WSt~aas~f~~~~~~~~~~kr~L 230 (234)
||+++.+. +.++++......+++..+++++|=.|++.+-+.... +.+|++.|
T Consensus 39 ~~~~g~~~--l~~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~-k~dD~~wL 90 (186)
T KOG1725|consen 39 YVFAGAIL--LLAVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPS-KDDDTQWL 90 (186)
T ss_pred hhhHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCC-CcchHHHH
Confidence 55555533 333444444566777888899999999999777444 45555554
Done!