Query 026709
Match_columns 234
No_of_seqs 134 out of 387
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_C SECE; RECA-type ATPase 22.4 77 0.0026 21.8 3.3 20 85-104 4-23 (65)
2 2ab9_A Pro-SFTI-1; protein, be 12.9 73 0.0025 19.0 1.0 11 5-15 19-29 (31)
3 3idw_A Actin cytoskeleton-regu 12.5 52 0.0018 23.8 0.3 24 75-98 37-60 (72)
4 3din_D Preprotein translocase 11.0 96 0.0033 21.3 1.3 20 85-104 4-23 (65)
5 3arc_Y Protein YCF12; PSII, me 8.5 1.6E+02 0.0056 17.6 1.5 11 115-125 13-23 (29)
6 1v54_E Cytochrome C oxidase po 8.0 90 0.0031 24.2 0.2 12 79-90 90-101 (109)
7 1oef_A Apolipoprotein E; glyco 7.6 1.1E+02 0.0037 17.3 0.4 20 79-98 4-23 (26)
8 2y69_E Cytochrome C oxidase su 7.3 1E+02 0.0035 25.2 0.2 11 79-89 133-143 (152)
9 2fcg_F Cationic, antibacterial 7.0 1.3E+02 0.0045 17.6 0.5 15 85-99 1-15 (26)
10 3im9_A MCAT, MCT, malonyl COA- 5.3 4.2E+02 0.014 22.7 3.1 39 106-145 60-98 (316)
No 1
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=22.36 E-value=77 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred hccCHHHHHhcccceeccCc
Q 026709 85 LGIHPDQIWKKTKSILNPFR 104 (234)
Q Consensus 85 LgiD~~~I~~Kl~~VL~P~~ 104 (234)
+..=++++++.++.|.||.|
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr 23 (65)
T 3dl8_C 4 LKEFLKGVRDELKRVVWPSR 23 (65)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhcccCcCH
Confidence 34456889999999999976
No 2
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=12.93 E-value=73 Score=19.01 Aligned_cols=11 Identities=55% Similarity=1.271 Sum_probs=8.9
Q ss_pred CCCCCcccCCC
Q 026709 5 FSVPPVVFPSG 15 (234)
Q Consensus 5 ~~~p~~~~~~~ 15 (234)
-+|||..||.+
T Consensus 19 ksippicfpdg 29 (31)
T 2ab9_A 19 KSIPPICFPDG 29 (31)
T ss_dssp SSSSCSSSSCC
T ss_pred ccCCCcccCCC
Confidence 36999999874
No 3
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=12.45 E-value=52 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.2
Q ss_pred CCCCcchhhhhccCHHHHHhcccc
Q 026709 75 FDDEEPLLDELGIHPDQIWKKTKS 98 (234)
Q Consensus 75 ~~~dePLleeLgiD~~~I~~Kl~~ 98 (234)
.|+++++|.|||+...+|.+=+++
T Consensus 37 ~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 37 PDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp GGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred hhCCHHHHHHcCCchhhHHHHHHH
Confidence 468999999999998888764443
No 4
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=10.96 E-value=96 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=12.6
Q ss_pred hccCHHHHHhcccceeccCc
Q 026709 85 LGIHPDQIWKKTKSILNPFR 104 (234)
Q Consensus 85 LgiD~~~I~~Kl~~VL~P~~ 104 (234)
+..=++++++.++.|.||.|
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr 23 (65)
T 3din_D 4 LRKFFREVIAEAKKISWPSR 23 (65)
T ss_dssp ------CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCcCH
Confidence 34456788999999999965
No 5
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=8.48 E-value=1.6e+02 Score=17.58 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=7.7
Q ss_pred chhhHHHHHHH
Q 026709 115 LSGPIVLYLSF 125 (234)
Q Consensus 115 LwGPL~f~l~l 125 (234)
++||+++.++.
T Consensus 13 ~aGP~VI~lLa 23 (29)
T 3arc_Y 13 IAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred hcCChheeehh
Confidence 47888877654
No 6
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=7.95 E-value=90 Score=24.18 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=9.8
Q ss_pred cchhhhhccCHH
Q 026709 79 EPLLDELGIHPD 90 (234)
Q Consensus 79 ePLleeLgiD~~ 90 (234)
.|+++||||+..
T Consensus 90 kPtl~ELGI~t~ 101 (109)
T 1v54_E 90 RPTLNELGISTP 101 (109)
T ss_dssp HHHHHHHTCCCT
T ss_pred hhHHHHhCCCCH
Confidence 589999999853
No 7
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=7.60 E-value=1.1e+02 Score=17.29 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.5
Q ss_pred cchhhhhccCHHHHHhcccc
Q 026709 79 EPLLDELGIHPDQIWKKTKS 98 (234)
Q Consensus 79 ePLleeLgiD~~~I~~Kl~~ 98 (234)
+|+-|++...+..|++++..
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 58889999999999888754
No 8
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.26 E-value=1e+02 Score=25.19 Aligned_cols=11 Identities=55% Similarity=0.939 Sum_probs=7.9
Q ss_pred cchhhhhccCH
Q 026709 79 EPLLDELGIHP 89 (234)
Q Consensus 79 ePLleeLgiD~ 89 (234)
.|+++||||+.
T Consensus 133 kPtl~ELGI~t 143 (152)
T 2y69_E 133 RPTLNELGIST 143 (152)
T ss_dssp HHHHHHHTCCC
T ss_pred hhHHHHhCCCC
Confidence 47777888764
No 9
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=6.95 E-value=1.3e+02 Score=17.63 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.4
Q ss_pred hccCHHHHHhcccce
Q 026709 85 LGIHPDQIWKKTKSI 99 (234)
Q Consensus 85 LgiD~~~I~~Kl~~V 99 (234)
++.+++.|.+|++.-
T Consensus 1 ig~~~kkIgQkIkdF 15 (26)
T 2fcg_F 1 IGKEFKRIVQRIKDF 15 (26)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 466788888888764
No 10
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus}
Probab=5.33 E-value=4.2e+02 Score=22.68 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHhhccceeeeeeehhH
Q 026709 106 NPTVHKGSDLSGPIVLYLSFGLFQLLAGKLQFGVILGWIV 145 (234)
Q Consensus 106 ~~~il~d~DLwGPL~f~l~la~~Lll~gk~~Fg~Iygi~~ 145 (234)
+.+.+++.+..=|.+|++-+++.-++.. +.-.++.|-+.
T Consensus 60 ~~~~l~~~~~~qpai~~~~~al~~~l~~-i~P~~v~GHSl 98 (316)
T 3im9_A 60 EEGKLGETENTQPALLTHSSALLAALKN-LNPDFTMGHSL 98 (316)
T ss_dssp TTSCTTSHHHHHHHHHHHHHHHHHHCSS-CCCSEEEESTT
T ss_pred CHhHhccccchhHHHHHHHHHHHHHHHh-CCCCEEEECCH
Confidence 3446788899999999999999888865 55555555443
Done!