Query 026709
Match_columns 234
No_of_seqs 134 out of 387
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 20:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsfa2 d.106.1.2 (A:161-240) 8.8 32 0.0023 23.6 -0.2 18 79-96 3-20 (80)
2 d1r9ja3 c.48.1.1 (A:527-669) T 8.6 41 0.003 24.7 0.4 23 80-102 107-129 (143)
3 d1p9ga_ g.3.1.1 (A:) Antifunga 7.9 52 0.0038 19.3 0.5 10 168-177 14-23 (41)
4 d1itza3 c.48.1.1 (A:540-675) T 7.4 77 0.0056 22.4 1.5 22 77-98 114-135 (136)
5 d1v54e_ a.118.11.1 (E:) Cytoch 6.6 54 0.0039 23.5 0.2 11 79-89 86-96 (105)
6 d2r8oa3 c.48.1.1 (A:528-663) T 6.5 66 0.0048 22.6 0.7 21 80-100 116-136 (136)
7 d1gpua3 c.48.1.1 (A:535-680) T 6.0 66 0.0048 23.6 0.4 26 79-104 109-134 (146)
8 d2cyua1 a.9.1.1 (A:2-40) E3-bi 5.9 66 0.0048 18.7 0.3 12 81-92 8-19 (39)
9 d1w85i_ a.9.1.1 (I:) E3/E1 bin 5.5 54 0.004 19.5 -0.3 12 81-92 11-22 (42)
10 d1umqa_ a.4.1.12 (A:) Photosyn 5.3 1.1E+02 0.0078 18.8 1.1 16 83-98 41-56 (60)
No 1
>d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=8.79 E-value=32 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.2
Q ss_pred cchhhhhccCHHHHHhcc
Q 026709 79 EPLLDELGIHPDQIWKKT 96 (234)
Q Consensus 79 ePLleeLgiD~~~I~~Kl 96 (234)
+++||+|-.|....|+|=
T Consensus 3 ~~vL~~LladIt~~W~~r 20 (80)
T d2nsfa2 3 EVILRTLAAEITQKWTSQ 20 (80)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 689999999999999874
No 2
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}
Probab=8.62 E-value=41 Score=24.75 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.9
Q ss_pred chhhhhccCHHHHHhcccceecc
Q 026709 80 PLLDELGIHPDQIWKKTKSILNP 102 (234)
Q Consensus 80 PLleeLgiD~~~I~~Kl~~VL~P 102 (234)
-|++++|.|.++|.+|.+.+|-=
T Consensus 107 ~L~~~fGlt~e~Iv~~~~~ll~k 129 (143)
T d1r9ja3 107 VLYKKFGITVEEVVRTGRELAKR 129 (143)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 49999999999999999998863
No 3
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]}
Probab=7.87 E-value=52 Score=19.28 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=7.5
Q ss_pred eeeeeecccc
Q 026709 168 HTCTSVVGYC 177 (234)
Q Consensus 168 ~q~~svLGYc 177 (234)
.-+.|+.|||
T Consensus 14 glccsiygyc 23 (41)
T d1p9ga_ 14 GLCCSIYGYC 23 (41)
T ss_dssp TCEEETTSCE
T ss_pred ceeEEEeeee
Confidence 3477888887
No 4
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}
Probab=7.39 E-value=77 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.3
Q ss_pred CCcchhhhhccCHHHHHhcccc
Q 026709 77 DEEPLLDELGIHPDQIWKKTKS 98 (234)
Q Consensus 77 ~dePLleeLgiD~~~I~~Kl~~ 98 (234)
.-+-|+|.+|+|.++|.+|.+.
T Consensus 114 ~~~~L~~~fglt~~~Iv~~~ks 135 (136)
T d1itza3 114 PAGTIYKEYGITVESIIAAAKS 135 (136)
T ss_dssp CHHHHHHHHTCSHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHc
Confidence 3456999999999999998764
No 5
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.63 E-value=54 Score=23.45 Aligned_cols=11 Identities=55% Similarity=0.939 Sum_probs=9.1
Q ss_pred cchhhhhccCH
Q 026709 79 EPLLDELGIHP 89 (234)
Q Consensus 79 ePLleeLgiD~ 89 (234)
.|.++||||+.
T Consensus 86 kptl~ELGI~t 96 (105)
T d1v54e_ 86 RPTLNELGIST 96 (105)
T ss_dssp HHHHHHHTCCC
T ss_pred hhHHHHhCCCC
Confidence 58899999974
No 6
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}
Probab=6.49 E-value=66 Score=22.62 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.2
Q ss_pred chhhhhccCHHHHHhccccee
Q 026709 80 PLLDELGIHPDQIWKKTKSIL 100 (234)
Q Consensus 80 PLleeLgiD~~~I~~Kl~~VL 100 (234)
-|++.+|+|.+.|.++.+..|
T Consensus 116 ~L~~~~Gl~~~~I~~~i~~~L 136 (136)
T d2r8oa3 116 LLFEEFGFTVDNVVAKAKELL 136 (136)
T ss_dssp HHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHhhC
Confidence 499999999999999987653
No 7
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.04 E-value=66 Score=23.55 Aligned_cols=26 Identities=8% Similarity=0.379 Sum_probs=22.1
Q ss_pred cchhhhhccCHHHHHhcccceeccCc
Q 026709 79 EPLLDELGIHPDQIWKKTKSILNPFR 104 (234)
Q Consensus 79 ePLleeLgiD~~~I~~Kl~~VL~P~~ 104 (234)
+-|++.+|+|.++|.+|.+.+|--.+
T Consensus 109 ~~L~~~fGlt~~~I~~~v~~~L~~~k 134 (146)
T d1gpua3 109 PEVFKFFGFTPEGVAERAQKTIAFYK 134 (146)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 35999999999999999999986433
No 8
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=5.89 E-value=66 Score=18.71 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=9.4
Q ss_pred hhhhhccCHHHH
Q 026709 81 LLDELGIHPDQI 92 (234)
Q Consensus 81 LleeLgiD~~~I 92 (234)
+.+|.|+|+++|
T Consensus 8 la~e~gidl~~i 19 (39)
T d2cyua1 8 LLAEHNLDASAI 19 (39)
T ss_dssp HHHHHTCCGGGS
T ss_pred HHHHcCCCHHHC
Confidence 568889988765
No 9
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.53 E-value=54 Score=19.48 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=9.0
Q ss_pred hhhhhccCHHHH
Q 026709 81 LLDELGIHPDQI 92 (234)
Q Consensus 81 LleeLgiD~~~I 92 (234)
+.+|.|||+++|
T Consensus 11 la~e~gidl~~i 22 (42)
T d1w85i_ 11 YAREKGVDIRLV 22 (42)
T ss_dssp HHHHTTCCTTTS
T ss_pred HHHHcCCCHHHC
Confidence 567888888765
No 10
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.28 E-value=1.1e+02 Score=18.85 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhhccCHHHHHhcccc
Q 026709 83 DELGIHPDQIWKKTKS 98 (234)
Q Consensus 83 eeLgiD~~~I~~Kl~~ 98 (234)
+.|||+-..+++|++.
T Consensus 41 ~~LGIsR~TL~rkmkk 56 (60)
T d1umqa_ 41 RRLNMHRRTLQRILAK 56 (60)
T ss_dssp HHHTSCHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHH
Done!