Query 026710
Match_columns 234
No_of_seqs 151 out of 1222
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 1.7E-63 3.6E-68 417.7 20.4 228 1-233 87-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 2.8E-55 6E-60 368.1 20.6 213 2-231 16-243 (321)
3 PF00191 Annexin: Annexin; In 99.8 1.7E-19 3.7E-24 121.2 8.3 66 6-71 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 2.4E-16 5.2E-21 105.8 8.2 66 162-229 1-66 (66)
5 smart00335 ANX Annexin repeats 99.6 2.5E-15 5.5E-20 96.4 6.1 53 19-71 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 1.6E-12 3.5E-17 83.2 6.0 51 179-229 3-53 (53)
7 PF14003 YlbE: YlbE-like prote 76.8 7.3 0.00016 25.6 4.5 49 25-73 13-62 (65)
8 PF14003 YlbE: YlbE-like prote 72.1 7.2 0.00016 25.7 3.6 37 181-218 12-48 (65)
9 KOG0031 Myosin regulatory ligh 49.5 1.3E+02 0.0027 23.7 7.4 19 28-46 22-40 (171)
10 PF03392 OS-D: Insect pheromon 42.5 1.2E+02 0.0026 21.4 6.3 73 131-203 1-86 (95)
11 COG5118 BDP1 Transcription ini 35.9 59 0.0013 29.1 4.2 43 5-50 370-412 (507)
12 cd00171 Sec7 Sec7 domain; Doma 35.0 1.7E+02 0.0036 23.3 6.5 51 4-58 34-87 (185)
13 PF13720 Acetyltransf_11: Udp 34.3 34 0.00075 23.5 2.1 21 31-51 27-47 (83)
14 PF13766 ECH_C: 2-enoyl-CoA Hy 34.0 76 0.0016 23.3 4.0 48 183-230 36-91 (118)
15 PF13758 Prefoldin_3: Prefoldi 33.4 1.2E+02 0.0026 21.7 4.7 27 5-31 32-58 (99)
16 smart00717 SANT SANT SWI3, AD 33.2 97 0.0021 17.6 4.7 34 6-39 7-41 (49)
17 PF00249 Myb_DNA-binding: Myb- 30.1 1.2E+02 0.0027 17.9 5.6 35 5-39 6-42 (48)
18 PF13062 DUF3924: Protein of u 29.7 63 0.0014 20.2 2.4 19 194-212 15-33 (62)
19 KOG0859 Synaptobrevin/VAMP-lik 29.3 96 0.0021 25.2 4.1 39 189-227 74-112 (217)
20 COG4800 Predicted transcriptio 28.8 1.6E+02 0.0035 22.6 4.9 40 148-189 20-66 (170)
21 PF08587 UBA_2: Ubiquitin asso 28.7 15 0.00032 22.5 -0.5 29 17-45 12-41 (46)
22 COG5126 FRQ1 Ca2+-binding prot 26.6 2.9E+02 0.0063 21.6 6.3 87 30-133 12-103 (160)
23 TIGR03031 cas_csx12 CRISPR-ass 26.1 2.3E+02 0.0049 27.3 6.4 52 20-71 237-288 (802)
24 PRK10969 DNA polymerase III su 25.8 1.9E+02 0.0042 19.5 4.4 34 193-226 18-52 (75)
25 cd00167 SANT 'SWI3, ADA2, N-Co 25.7 1.3E+02 0.0028 16.7 4.9 34 6-39 5-39 (45)
26 PF00607 Gag_p24: gag gene pro 23.9 2.5E+02 0.0053 22.9 5.7 67 147-215 123-191 (206)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-63 Score=417.66 Aligned_cols=228 Identities=36% Similarity=0.601 Sum_probs=219.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCHHHHHHHHccCCHHHHHHHHHHHHhhhCCCHHHHhhhccchhHHHHHHHHHhhhccCCC
Q 026710 1 MHPWERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGP 80 (234)
Q Consensus 1 ~~~~~~da~~L~~A~~g~gtde~~li~iL~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~ll~~ll~~~R~e~~ 80 (234)
+||+++||+.|++||+|.||||.+||||||+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.|++|.|+|+.
T Consensus 87 ~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~ 166 (321)
T KOG0819|consen 87 KPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGD 166 (321)
T ss_pred CCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhHhccccCCCCchhHHHHHHhcCCHHHHHHHHHHHHHHhCCChHHhhhhh--h----hHHHHHH
Q 026710 81 KVKEDVAKSEAKALISAVKNAEKQNPIENDEVVRILSTRSKPHLKSVFKHYKEIAGQHFEDELDVH--L----ILQAAVQ 154 (234)
Q Consensus 81 ~v~~~~~~~da~~L~~A~~g~g~~~~~d~~~li~Il~~rs~~~l~~i~~~Y~~~~~~~L~~~I~~e--~----~~~~~l~ 154 (234)
.||...+..||..|++|++.+ |++|++.|+.||++||..||+.+++.|++.+|+++++.|+.+ | .+..++.
T Consensus 167 ~vd~~la~~dA~~L~~Age~k---~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~ 243 (321)
T KOG0819|consen 167 RVDDALAKQDAQDLYEAGEKK---WGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVK 243 (321)
T ss_pred CcCHHHHHHHHHHHHHHhhhh---ccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHH
Confidence 999999999999999999864 668999999999999999999999999999999999999997 4 4567888
Q ss_pred hhcCcchhhHHHHHHHHhccccccchhhHHHHHHhccHHHHHHHHHHHHHhcCCcHHHHHhhhccHHHHHHHHHhcccC
Q 026710 155 CLITPQSYFSRVLDEAMRDGADKNTKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLLTLMARG 233 (234)
Q Consensus 155 ~~~~~~~~~a~~l~~a~~g~~~~~~~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll~l~~~~ 233 (234)
|+.++|.|||++|+.||+|.||+ +.+||||+|||||.||..|+.+|+++||+||.++|+++|||||+++|++||++.
T Consensus 244 c~~n~~~yFA~~L~~amkg~GTd--d~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~ 320 (321)
T KOG0819|consen 244 CIRNPPAYFAERLRKAMKGLGTD--DKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGD 320 (321)
T ss_pred HHcCHHHHHHHHHHHHHhccCCC--ccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCC
Confidence 99999999999999999999975 899999999999999999999999999999999999999999999999999864
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-55 Score=368.13 Aligned_cols=213 Identities=21% Similarity=0.355 Sum_probs=203.0
Q ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHccCCHHHHHHHHHHHHhhhCCCHHHHhhhccchhHHHHHHHHHhhhccCCCC
Q 026710 2 HPWERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGPK 81 (234)
Q Consensus 2 ~~~~~da~~L~~A~~g~gtde~~li~iL~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~ll~~ll~~~R~e~~~ 81 (234)
+.+..||+.|++||+|+||||++||+||++|||.|||+|+++|+.+||+||.++|++++||+|++++++|+.
T Consensus 16 f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~-------- 87 (321)
T KOG0819|consen 16 FDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMK-------- 87 (321)
T ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcC--------
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhHhccccCCCCchhHHHHHHhcCCHHHHHHHHHHHHHHhCCChHHhhhhh--hhHHHHHHhhcCc
Q 026710 82 VKEDVAKSEAKALISAVKNAEKQNPIENDEVVRILSTRSKPHLKSVFKHYKEIAGQHFEDELDVH--LILQAAVQCLITP 159 (234)
Q Consensus 82 v~~~~~~~da~~L~~A~~g~g~~~~~d~~~li~Il~~rs~~~l~~i~~~Y~~~~~~~L~~~I~~e--~~~~~~l~~~~~~ 159 (234)
+|+++||.+|++|++|.|| |++++|||+|+|||.||++|+++|+..|+++|+++|.++ |+|+++|+.++++
T Consensus 88 ---~p~~~DA~~l~~amkg~gt----de~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~ 160 (321)
T KOG0819|consen 88 ---PPAEYDAKELKKAMKGLGT----DEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQG 160 (321)
T ss_pred ---CHHHhHHHHHHHHHhccCc----chhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhc
Confidence 8999999999999999887 999999999999999999999999999999999999998 9999999999999
Q ss_pred chhh------------HHHHHHHHhc-cccccchhhHHHHHHhccHHHHHHHHHHHHHhcCCcHHHHHhhhccHHHHHHH
Q 026710 160 QSYF------------SRVLDEAMRD-GADKNTKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFL 226 (234)
Q Consensus 160 ~~~~------------a~~l~~a~~g-~~~~~~~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~L 226 (234)
.|++ |..|++|.+. +|+ |+..+++||++||..||..++.+|++.+|++++++|+++++|||+++|
T Consensus 161 ~R~e~~~vd~~la~~dA~~L~~Age~k~gt--de~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~l 238 (321)
T KOG0819|consen 161 NRDEGDRVDDALAKQDAQDLYEAGEKKWGT--DEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLL 238 (321)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHhhhhccC--cHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHH
Confidence 8873 6788888875 565 488999999999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 026710 227 LTLMA 231 (234)
Q Consensus 227 l~l~~ 231 (234)
++++.
T Consensus 239 laiv~ 243 (321)
T KOG0819|consen 239 LAIVK 243 (321)
T ss_pred HHHHH
Confidence 99974
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.80 E-value=1.7e-19 Score=121.21 Aligned_cols=66 Identities=36% Similarity=0.537 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHccCCHHHHHHHHHHHHhhhCCCHHHHhhhccchhHHHHHHHH
Q 026710 6 RDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 71 (234)
Q Consensus 6 ~da~~L~~A~~g~gtde~~li~iL~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~ll~~l 71 (234)
+||+.|++|++|+|+|+..+++|||+||+.|+++|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 599999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.67 E-value=2.4e-16 Score=105.79 Aligned_cols=66 Identities=27% Similarity=0.551 Sum_probs=61.7
Q ss_pred hhHHHHHHHHhccccccchhhHHHHHHhccHHHHHHHHHHHHHhcCCcHHHHHhhhccHHHHHHHHHh
Q 026710 162 YFSRVLDEAMRDGADKNTKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLLTL 229 (234)
Q Consensus 162 ~~a~~l~~a~~g~~~~~~~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll~l 229 (234)
++|+.++.+++|+|++ +..+++||++|++.|+..|+.+|++.||++|.++|+++++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~d--e~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTD--EDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSST--HHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCC--hhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 4788999999999865 89999999999999999999999999999999999999999999999986
No 5
>smart00335 ANX Annexin repeats.
Probab=99.59 E-value=2.5e-15 Score=96.37 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHhhhCCCHHHHhhhccchhHHHHHHHH
Q 026710 19 PNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 71 (234)
Q Consensus 19 gtde~~li~iL~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~ll~~l 71 (234)
||||..|++|+|+||+.|++.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998764
No 6
>smart00335 ANX Annexin repeats.
Probab=99.36 E-value=1.6e-12 Score=83.21 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=49.2
Q ss_pred chhhHHHHHHhccHHHHHHHHHHHHHhcCCcHHHHHhhhccHHHHHHHHHh
Q 026710 179 TKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLLTL 229 (234)
Q Consensus 179 ~~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll~l 229 (234)
|+..|++|+++|++.|+..|+.+|++.||++|.++|+++++|+|+++|++|
T Consensus 3 de~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 3 DEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999875
No 7
>PF14003 YlbE: YlbE-like protein
Probab=76.81 E-value=7.3 Score=25.63 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=37.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhhhCCCHHHHhhhccch-hHHHHHHHHHh
Q 026710 25 IVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHG-KEKKLLVALVS 73 (234)
Q Consensus 25 li~iL~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg-~~~~ll~~ll~ 73 (234)
..--..+|.|+++..+..++...|++.+.+.|.+-..+ .+..+++.++.
T Consensus 13 ~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~~ 62 (65)
T PF14003_consen 13 IWYRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMFQ 62 (65)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHHH
Confidence 34456699999999999999999999999999876544 45555555543
No 8
>PF14003 YlbE: YlbE-like protein
Probab=72.09 E-value=7.2 Score=25.66 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=32.1
Q ss_pred hhHHHHHHhccHHHHHHHHHHHHHhcCCcHHHHHhhhc
Q 026710 181 KGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKA 218 (234)
Q Consensus 181 ~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~ 218 (234)
..+.|+| +|.+.++...-.++...||+++-+.|++-.
T Consensus 12 P~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 12 PIWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred cHHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4677888 788999999999999999999999998543
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=49.52 E-value=1.3e+02 Score=23.66 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 026710 28 IASTRSSDELLGARKAYHS 46 (234)
Q Consensus 28 iL~~rs~~q~~~i~~~Y~~ 46 (234)
+...-+..|+|+++++|.-
T Consensus 22 vFamf~q~QIqEfKEAF~~ 40 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNL 40 (171)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4455678899999999974
No 10
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=42.45 E-value=1.2e+02 Score=21.43 Aligned_cols=73 Identities=14% Similarity=0.305 Sum_probs=45.6
Q ss_pred HHHHhC-CChHHhhhhhhhHHHHHHhhcCcchhh--H----HHHHHHHhcc---ccc---cchhhHHHHHHhccHHHHHH
Q 026710 131 YKEIAG-QHFEDELDVHLILQAAVQCLITPQSYF--S----RVLDEAMRDG---ADK---NTKKGLTRVLVTRADVDIRA 197 (234)
Q Consensus 131 Y~~~~~-~~L~~~I~~e~~~~~~l~~~~~~~~~~--a----~~l~~a~~g~---~~~---~~~~~liril~~r~~~~l~~ 197 (234)
|...|. .++.+.+.++.-+...+.|+++..... + ..+-+|++.. -|. ..-..++..|..+-+.+|..
T Consensus 1 Y~~~yD~iDvd~iL~N~rl~~~y~~ClldkgpCt~~~~~lK~~ipeal~t~C~KCt~kQK~~~~kv~~~l~~~~P~~w~~ 80 (95)
T PF03392_consen 1 YTTKYDNIDVDEILKNDRLLKSYIDCLLDKGPCTPEGKELKKVIPEALKTNCAKCTPKQKENARKVIKFLKKNYPDEWEE 80 (95)
T ss_dssp -HCTTTSSCHHHHHH-HHHHHHHHHHHTSSSTSHHHHHHHHHHHHHHHHCTTTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCHHHHHcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 444554 588888888888888999999875543 2 3444555542 111 11356667777777777888
Q ss_pred HHHHHH
Q 026710 198 ISDDYR 203 (234)
Q Consensus 198 i~~~Y~ 203 (234)
+...|-
T Consensus 81 l~~KyD 86 (95)
T PF03392_consen 81 LVKKYD 86 (95)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 877764
No 11
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=35.86 E-value=59 Score=29.10 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHccCCHHHHHHHHHHHHhhhCC
Q 026710 5 ERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEH 50 (234)
Q Consensus 5 ~~da~~L~~A~~g~gtde~~li~iL~~rs~~q~~~i~~~Y~~~~~~ 50 (234)
..|.+..++|+.-||||...|-.+..+|+ +.+|+..|.+--.+
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~---RkqIKaKfi~Eek~ 412 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRE---RKQIKAKFIKEEKV 412 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchh---HHHHHHHHHHHhhh
Confidence 45778889999999999998888888886 77777788765444
No 12
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=34.97 E-value=1.7e+02 Score=23.33 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHccCCHHHHHHHHHHHHhhh---CCCHHHHhhh
Q 026710 4 WERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLF---EHSIEEDVAS 58 (234)
Q Consensus 4 ~~~da~~L~~A~~g~gtde~~li~iL~~rs~~q~~~i~~~Y~~~~---~~~L~~~i~~ 58 (234)
+..-|+.|+.. .|.|...|-+.|+... +.-.++...|-..| |.++...++.
T Consensus 34 ~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 34 PKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 34555556554 5679999999999887 45577888888876 6677666654
No 13
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=34.34 E-value=34 Score=23.51 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHhhhCCC
Q 026710 31 TRSSDELLGARKAYHSLFEHS 51 (234)
Q Consensus 31 ~rs~~q~~~i~~~Y~~~~~~~ 51 (234)
+-+.+++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 457899999999999999754
No 14
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=34.00 E-value=76 Score=23.33 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcHHHHHhhhc--------cHHHHHHHHHhc
Q 026710 183 LTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKA--------KGSYKEFLLTLM 230 (234)
Q Consensus 183 liril~~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~--------~G~~~~~Ll~l~ 230 (234)
....|.++|+.-+.-....+++-.+.+|.+.+..|+ .|||.+.+.+++
T Consensus 36 ~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 36 TLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345566777777777777777766777777777665 488888887765
No 15
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=33.37 E-value=1.2e+02 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHcc
Q 026710 5 ERDARLIKEALKKGPNSNSVIVEIAST 31 (234)
Q Consensus 5 ~~da~~L~~A~~g~gtde~~li~iL~~ 31 (234)
..|...++.-+.|...++..|-+||+.
T Consensus 32 ~e~l~~i~r~f~g~lv~~kEi~~ilG~ 58 (99)
T PF13758_consen 32 REDLLRIRRDFGGSLVTEKEIKEILGE 58 (99)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhCC
Confidence 334444444444444455555555544
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.16 E-value=97 Score=17.58 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHccCCHHHHHH
Q 026710 6 RDARLIKEALKKGP-NSNSVIVEIASTRSSDELLG 39 (234)
Q Consensus 6 ~da~~L~~A~~g~g-tde~~li~iL~~rs~~q~~~ 39 (234)
.+-..|..++...| .+=..|-..+.+||+.+...
T Consensus 7 ~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~ 41 (49)
T smart00717 7 EEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRE 41 (49)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHH
Confidence 45567888888888 78889999999999887654
No 17
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=30.14 E-value=1.2e+02 Score=17.91 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHHc-cCCHHHHHH
Q 026710 5 ERDARLIKEALKKGPNS-NSVIVEIAS-TRSSDELLG 39 (234)
Q Consensus 5 ~~da~~L~~A~~g~gtd-e~~li~iL~-~rs~~q~~~ 39 (234)
..+-..|.+|+.-.|++ =..|-.-+. +||..|...
T Consensus 6 ~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 6 EEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 45667789999999988 788888888 999877653
No 18
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=29.74 E-value=63 Score=20.17 Aligned_cols=19 Identities=5% Similarity=0.361 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCcHHH
Q 026710 194 DIRAISDDYRNHYAIPLAD 212 (234)
Q Consensus 194 ~l~~i~~~Y~~~yg~~L~~ 212 (234)
.|..++++|+++.|-++.+
T Consensus 15 kl~llkqayqkktgatise 33 (62)
T PF13062_consen 15 KLDLLKQAYQKKTGATISE 33 (62)
T ss_pred HHHHHHHHHHhhcCCccch
Confidence 4556777777777776654
No 19
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.33 E-value=96 Score=25.24 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=29.8
Q ss_pred hccHHHHHHHHHHHHHhcCCcHHHHHhhhccHHHHHHHH
Q 026710 189 TRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLL 227 (234)
Q Consensus 189 ~r~~~~l~~i~~~Y~~~yg~~L~~~i~~~~~G~~~~~Ll 227 (234)
.++..-|+.|++-|.+.||.....++...+.-.|..-|.
T Consensus 74 ~ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~ 112 (217)
T KOG0859|consen 74 QIPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLK 112 (217)
T ss_pred cccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHH
Confidence 345577999999999999998888877666666655543
No 20
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=28.76 E-value=1.6e+02 Score=22.60 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=24.5
Q ss_pred hHHHHHHhhcCcchhhHH-------HHHHHHhccccccchhhHHHHHHh
Q 026710 148 ILQAAVQCLITPQSYFSR-------VLDEAMRDGADKNTKKGLTRVLVT 189 (234)
Q Consensus 148 ~~~~~l~~~~~~~~~~a~-------~l~~a~~g~~~~~~~~~liril~~ 189 (234)
.|++++.-+--.+..||+ .|+.-++| .|++.++++||+-+
T Consensus 20 ~l~~~l~Elglt~~eFak~anIP~StLYKil~G--~dpr~~tl~~I~kt 66 (170)
T COG4800 20 CLQKLLDELGLTPSEFAKRANIPLSTLYKILKG--SDPRYDTLTRIFKT 66 (170)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHhC--CCccHHHHHHHHHH
Confidence 455555554445566654 46777777 34556788888754
No 21
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=28.71 E-value=15 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHccCCH-HHHHHHHHHHH
Q 026710 17 KGPNSNSVIVEIASTRSS-DELLGARKAYH 45 (234)
Q Consensus 17 g~gtde~~li~iL~~rs~-~q~~~i~~~Y~ 45 (234)
..|-+.+-|++.|-+-.+ +|-.+|+.+|.
T Consensus 12 tMGY~kdeI~eaL~~~~~~~~~neIkDAY~ 41 (46)
T PF08587_consen 12 TMGYDKDEIYEALESSEPSPQSNEIKDAYL 41 (46)
T ss_dssp TT---HHHHHHHCCSSS------SSCCHHH
T ss_pred HhCCCHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 357789999999988666 78889999995
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=26.57 E-value=2.9e+02 Score=21.61 Aligned_cols=87 Identities=13% Similarity=0.286 Sum_probs=45.4
Q ss_pred ccCCHHHHHHHHHHHHhhhCCCHHHHhhhccchhHHHHHHHHHhhhccCCCCCChHHHHHHHHHHHHhHhccccCCCCch
Q 026710 30 STRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGPKVKEDVAKSEAKALISAVKNAEKQNPIEN 109 (234)
Q Consensus 30 ~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~ll~~ll~~~R~e~~~v~~~~~~~da~~L~~A~~g~g~~~~~d~ 109 (234)
..-+..|+++++++|+-..-.. .-. -..+++..++-+ -|. .+....+..|.+.+.. |. ...|.
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~-~G~---I~~~el~~ilr~--lg~---------~~s~~ei~~l~~~~d~-~~-~~idf 74 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDS-DGL---IDRNELGKILRS--LGF---------NPSEAEINKLFEEIDA-GN-ETVDF 74 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCC-CCC---CcHHHHHHHHHH--cCC---------CCcHHHHHHHHHhccC-CC-CccCH
Confidence 4567899999999997543211 000 012334443321 111 3445566666666654 22 23567
Q ss_pred hHHHHHHhcCC-----HHHHHHHHHHHHH
Q 026710 110 DEVVRILSTRS-----KPHLKSVFKHYKE 133 (234)
Q Consensus 110 ~~li~Il~~rs-----~~~l~~i~~~Y~~ 133 (234)
..|+.++...+ .++++..++.|-.
T Consensus 75 ~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~ 103 (160)
T COG5126 75 PEFLTVMSVKLKRGDKEEELREAFKLFDK 103 (160)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhCC
Confidence 76666654433 5566666655543
No 23
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=26.07 E-value=2.3e+02 Score=27.29 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=34.2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHhhhCCCHHHHhhhccchhHHHHHHHH
Q 026710 20 NSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 71 (234)
Q Consensus 20 tde~~li~iL~~rs~~q~~~i~~~Y~~~~~~~L~~~i~~~~sg~~~~ll~~l 71 (234)
..-..+..++++-||-|+..++..|...-.+.........+..-|.+.+..|
T Consensus 237 l~~~~l~nLvGnlSN~qlk~LrrYfnDk~~~k~d~wdeqkf~~~~~r~v~~w 288 (802)
T TIGR03031 237 LPSVCLSNLLGNLSNLQLKNLRRYFNDKIHKKPDQWDEQKFGNEFLRMLKNW 288 (802)
T ss_pred CchhhHHHHhhhhhhhhHHHHHHHhccccccccccccHhHHHHHHHHHHHhc
Confidence 3456789999999999999999999865544433344444444444444433
No 24
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=25.79 E-value=1.9e+02 Score=19.54 Aligned_cols=34 Identities=21% Similarity=0.569 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCc-HHHHHhhhccHHHHHHH
Q 026710 193 VDIRAISDDYRNHYAIP-LADKIEAKAKGSYKEFL 226 (234)
Q Consensus 193 ~~l~~i~~~Y~~~yg~~-L~~~i~~~~~G~~~~~L 226 (234)
.||.+-.-+|+++|+++ +.+.|+.+..-+++...
T Consensus 18 vDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yF 52 (75)
T PRK10969 18 VDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYF 52 (75)
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHH
Confidence 56777777899999988 67778887877777654
No 25
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=25.67 E-value=1.3e+02 Score=16.67 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHccCCHHHHHH
Q 026710 6 RDARLIKEALKKGP-NSNSVIVEIASTRSSDELLG 39 (234)
Q Consensus 6 ~da~~L~~A~~g~g-tde~~li~iL~~rs~~q~~~ 39 (234)
.+-..|..++...| .+=..|...+.+||..|+..
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 45566778888778 78888999998999877653
No 26
>PF00607 Gag_p24: gag gene protein p24 (core nucleocapsid protein); InterPro: IPR000721 The Gag protein from retroviruses, also known as p24, forms the inner protein layer of the nucleocapsid. This protein performs highly complex orchestrated tasks during the assembly, budding, maturation and infection stages of the viral replication cycle. During viral assembly, the proteins form membrane associations and self-associations that ultimately result in budding of an immature virion from the infected cell. Gag precursors also function during viral assembly to selectively bind and package two plus strands of genomic RNA. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.; GO: 0016032 viral reproduction; PDB: 1BMX_A 1SJH_C 1SJE_C 1U57_A 1FGL_B 1G03_A 2XT1_A 2JO0_A 2L6E_A 2HJL_C ....
Probab=23.93 E-value=2.5e+02 Score=22.85 Aligned_cols=67 Identities=25% Similarity=0.256 Sum_probs=44.7
Q ss_pred hhHHHHHHhhcCcchhhHHHHHHHHhcc-ccccchhhHHHHH-HhccHHHHHHHHHHHHHhcCCcHHHHHh
Q 026710 147 LILQAAVQCLITPQSYFSRVLDEAMRDG-ADKNTKKGLTRVL-VTRADVDIRAISDDYRNHYAIPLADKIE 215 (234)
Q Consensus 147 ~~~~~~l~~~~~~~~~~a~~l~~a~~g~-~~~~~~~~liril-~~r~~~~l~~i~~~Y~~~yg~~L~~~i~ 215 (234)
.+|.++...-..|..+|..+|..++... +...-...+++-| ......+++.|-..+. -+.+|++.|+
T Consensus 123 ~~~~~I~QGp~Epf~dFv~rl~~a~~~~~~~~~~~~~~~~~L~~eNAN~~C~~~~~~l~--~~~~lee~~~ 191 (206)
T PF00607_consen 123 ESFTKIKQGPKEPFADFVDRLQKAIRREQGENEVKNILIRQLAYENANPDCRRIIRPLG--KDAPLEEMIR 191 (206)
T ss_dssp STGGGH-S-TTSHHHHHHHHHHHHHHCSSSTHHHHHHHHHHHHHHTS-HHHHHHHHHH---TTSTHHHHHH
T ss_pred ccHHHhhhccccchHHHHHHHHHHHhhcccccchhhHHHHHhhhccchHHHHHHHHccC--CCCCHHHHHH
Confidence 4788888888888889999999999763 2211124455555 4677788888888776 3468888776
Done!