BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026711
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 58/160 (36%), Gaps = 28/160 (17%)
Query: 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPL---------- 96
G +FYF V Q+T EDV R + G D L
Sbjct: 72 GDNFYFTGVHDANDKRFQETF-----EDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYS 126
Query: 97 KQNATWLFPSLKVPWYTTKASKEKE---VGCFQEQIRLPHGEALDIIGVNTGSLQGKIPT 153
K + W FPS P+Y + + V F + G + D + S Q ++P
Sbjct: 127 KISKRWNFPS---PYYRLRFKVPRSNITVAIFMLDTVMLCGNSDDFV-----SQQPEMPR 178
Query: 154 ALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEH 193
L A L +WLK L A + +V G +P+ EH
Sbjct: 179 DLGVARTQL--SWLKKQLAAAKEDYVLVAGHYPIWSIAEH 216
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 58/160 (36%), Gaps = 28/160 (17%)
Query: 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPL---------- 96
G +FYF V Q+T EDV R + G D L
Sbjct: 51 GDNFYFTGVHDANDKRFQETF-----EDVFSDRALRNIPWYVLAGNHDHLGNVSAQIAYS 105
Query: 97 KQNATWLFPSLKVPWYTTKASKEKE---VGCFQEQIRLPHGEALDIIGVNTGSLQGKIPT 153
K + W FPS P+Y + + V F + G + D + S Q ++P
Sbjct: 106 KISKRWNFPS---PYYRLRFKVPRSNITVAIFMLDTVMLCGNSDDFV-----SQQPEMPR 157
Query: 154 ALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEH 193
L A L +WLK L A + +V G +P+ EH
Sbjct: 158 DLGVARTQL--SWLKKQLAAAKEDYVLVAGHYPIWSIAEH 195
>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex
With Acetyl-Coa And Vanillin
Length = 276
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFSPLVACD 129
>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex
With Acetyl-Coa And Vanillin
Length = 276
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFSPLVACD 129
>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
Length = 276
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFSPLVACD 129
>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|C Chain C, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|D Chain D, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|E Chain E, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|F Chain F, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|G Chain G, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|H Chain H, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|J Chain J, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|K Chain K, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2J5I|L Chain L, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
pdb|2VSS|A Chain A, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex
With Acetyl-Coa And Vanillin
pdb|2VSS|B Chain B, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex
With Acetyl-Coa And Vanillin
pdb|2VSS|C Chain C, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex
With Acetyl-Coa And Vanillin
pdb|2VSS|D Chain D, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex
With Acetyl-Coa And Vanillin
Length = 276
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFSPLVACD 129
>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase
Length = 276
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFSPLVACD 129
>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase
( Hchl) With Acetyl-Coenzyme A And Vanillin Gives
Insights Into Substrate Specificity And Mechanism
Length = 276
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFAPLVACD 129
>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase
( Hchl) With Acetyl-Coenzyme A And Vanillin Gives
Insights Into Substrate Specificity And Mechanism
Length = 276
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFAPLVACD 129
>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase
( Hchl) With Acetyl-Coenzyme A And Vanillin Gives
Insights Into Substrate Specificity And Mechanism.
pdb|2VSU|B Chain B, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase
( Hchl) With Acetyl-Coenzyme A And Vanillin Gives
Insights Into Substrate Specificity And Mechanism.
pdb|2VSU|D Chain D, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase
( Hchl) With Acetyl-Coenzyme A And Vanillin Gives
Insights Into Substrate Specificity And Mechanism
Length = 276
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFAPLVACD 129
>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase
( Hchl) With Acetyl-Coenzyme A And Vanillin Gives
Insights Into Substrate Specificity And Mechanism
Length = 275
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 147 LQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICE 191
LQ KI LL + K + NG WC GF PLV C+
Sbjct: 86 LQEKIRREASQWQWKLLRMYAKPTIAMVNG-WCFGGGFAPLVACD 129
>pdb|3NM1|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 67 LLLKQMEDVAKSYDARFVINTSELGEDD-PLKQNATWLFPSLKVPWYTTKASKEKEVGCF 125
L++ DVA + A + +G+DD P+ + P + + W VG
Sbjct: 72 LIINDRIDVAMAIGADGI----HVGQDDMPIPMIRKLVGPDMVIGW---------SVGFP 118
Query: 126 QEQIRLPH--GEALDIIGVNT--GSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIV 181
+E L + +D IGV T +L K P P + + + ALE N WC
Sbjct: 119 EEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAI--RVLDALERNNAHWCRT 176
Query: 182 V---GFHP 186
V G HP
Sbjct: 177 VGIGGLHP 184
>pdb|3NL2|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 67 LLLKQMEDVAKSYDARFVINTSELGEDD-PLKQNATWLFPSLKVPWYTTKASKEKEVGCF 125
L++ DVA + A + +G+DD P+ + P + + W VG
Sbjct: 72 LIINDRIDVAMAIGADGI----HVGQDDMPIPMIRKLVGPDMVIGW---------SVGFP 118
Query: 126 QEQIRLPHG--EALDIIGVNT--GSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIV 181
+E L + +D IGV T +L K P P + + + ALE N WC
Sbjct: 119 EEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAI--RVLDALERNNAHWCRT 176
Query: 182 V---GFHP 186
V G HP
Sbjct: 177 VGIGGLHP 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,101,285
Number of Sequences: 62578
Number of extensions: 288297
Number of successful extensions: 724
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 17
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)