BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026711
         (234 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6EWG8|POL2_CRLVP RNA2 polyprotein OS=Cherry rasp leaf virus (isolate Potato/United
           States) PE=3 SV=1
          Length = 960

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 155 LPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKK 201
           L   SGDL+++W+ SA   TNG+  IV  +      E  EE+L   K
Sbjct: 645 LAGYSGDLIIDWMISASALTNGRCYIVPVYDQNTFSEVSEEKLRQCK 691


>sp|P0CN87|TRPG_CRYNB Anthranilate synthase component 2 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=TRP1 PE=4 SV=1
          Length = 752

 Score = 32.3 bits (72), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 85  INTSELGEDDPLKQNATW------LFPSLKVPWYTTK----ASKEKE--VGCFQEQIRLP 132
           I+TS   E   L Q+A        L PSL  PW+TT+    +S+ K   VG FQ Q    
Sbjct: 544 ISTSTAREISALVQSARSQSSSKPLEPSLSSPWFTTQSDLLSSRRKPLLVGVFQNQSLSD 603

Query: 133 HGEALDIIGVNTGSLQGKIPTA 154
              A++ IG+N   L G  P A
Sbjct: 604 ILSAVEEIGLNLVQLHGDEPQA 625


>sp|P27710|TRPG_CRYNH Anthranilate synthase component 2 OS=Cryptococcus neoformans var.
           grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
           / FGSC 9487) GN=TRP1 PE=4 SV=2
          Length = 752

 Score = 31.2 bits (69), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 85  INTSELGEDDPLKQNATW------LFPSLKVPWYTTK----ASKEKE--VGCFQEQIRLP 132
           I+TS   E   L Q+A        L PSL  PW+T++    +S+ K   VG FQ Q    
Sbjct: 544 ISTSTAREISALVQSARSQSSSKPLEPSLSSPWFTSQSALLSSRRKPLLVGVFQNQSLSD 603

Query: 133 HGEALDIIGVNTGSLQGKIPTA 154
              A+D IG++   L G  P A
Sbjct: 604 ILSAVDEIGLDLVQLHGDEPQA 625


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,480,136
Number of Sequences: 539616
Number of extensions: 3665590
Number of successful extensions: 7929
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7923
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)