Query 026711
Match_columns 234
No_of_seqs 175 out of 1301
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00422 glideosome-associated 100.0 1E-34 2.3E-39 257.6 18.1 174 47-228 24-262 (394)
2 KOG2679 Purple (tartrate-resis 100.0 5.3E-34 1.1E-38 237.1 16.1 207 8-224 8-253 (336)
3 cd07378 MPP_ACP5 Homo sapiens 100.0 6.6E-28 1.4E-32 207.5 18.1 176 50-229 1-216 (277)
4 cd00839 MPP_PAPs purple acid p 99.9 9.4E-25 2E-29 189.3 14.5 170 48-227 3-206 (294)
5 PLN02533 probable purple acid 99.9 1.9E-24 4.1E-29 196.6 15.9 164 47-226 137-334 (427)
6 cd07395 MPP_CSTP1 Homo sapiens 99.9 7.5E-22 1.6E-26 168.8 17.6 178 48-228 3-220 (262)
7 PRK11148 cyclic 3',5'-adenosin 99.9 3.6E-22 7.8E-27 172.1 14.1 173 48-226 13-207 (275)
8 cd07402 MPP_GpdQ Enterobacter 99.9 9.4E-22 2E-26 165.6 14.0 170 51-227 1-195 (240)
9 KOG1378 Purple acid phosphatas 99.9 7.9E-22 1.7E-26 176.2 14.0 167 46-224 144-342 (452)
10 cd07396 MPP_Nbla03831 Homo sap 99.9 1.4E-20 3.1E-25 161.6 14.8 175 50-228 1-230 (267)
11 cd07401 MPP_TMEM62_N Homo sapi 99.8 7.9E-20 1.7E-24 156.1 16.7 154 71-230 24-215 (256)
12 cd07399 MPP_YvnB Bacillus subt 99.8 2E-20 4.3E-25 155.8 10.9 145 50-225 1-160 (214)
13 cd00842 MPP_ASMase acid sphing 99.8 6.7E-18 1.4E-22 146.9 14.7 162 67-232 54-267 (296)
14 TIGR03767 P_acnes_RR metalloph 99.7 3.1E-16 6.7E-21 142.1 13.1 94 135-232 300-398 (496)
15 TIGR03729 acc_ester putative p 99.7 1E-15 2.2E-20 129.4 13.7 158 69-226 21-221 (239)
16 cd07383 MPP_Dcr2 Saccharomyces 99.7 5.4E-16 1.2E-20 127.4 11.1 145 49-228 2-178 (199)
17 COG1409 Icc Predicted phosphoh 99.7 2.7E-15 5.9E-20 129.0 14.9 170 51-226 2-193 (301)
18 PF00149 Metallophos: Calcineu 99.6 1.5E-15 3.3E-20 117.8 9.8 174 50-224 1-198 (200)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.6 9.5E-15 2.1E-19 117.9 12.6 145 76-226 19-173 (188)
20 cd08163 MPP_Cdc1 Saccharomyces 99.6 1E-14 2.2E-19 124.6 11.9 152 70-225 35-227 (257)
21 cd07393 MPP_DR1119 Deinococcus 99.6 2.6E-14 5.7E-19 120.3 13.9 153 66-227 25-206 (232)
22 TIGR03768 RPA4764 metallophosp 99.5 8.9E-14 1.9E-18 125.2 13.3 95 137-231 305-416 (492)
23 cd07400 MPP_YydB Bacillus subt 99.4 7.4E-13 1.6E-17 103.0 9.0 97 71-228 26-127 (144)
24 cd07404 MPP_MS158 Microscilla 99.3 1.9E-12 4.1E-17 103.2 6.5 123 76-226 22-149 (166)
25 cd07388 MPP_Tt1561 Thermus the 99.3 6.1E-11 1.3E-15 99.2 15.4 158 49-224 4-189 (224)
26 cd00840 MPP_Mre11_N Mre11 nucl 99.2 1.2E-10 2.7E-15 96.4 11.8 148 66-228 27-203 (223)
27 PRK11340 phosphodiesterase Yae 99.2 8.5E-10 1.8E-14 95.0 14.7 151 47-232 47-221 (271)
28 KOG1432 Predicted DNA repair e 99.2 7.4E-10 1.6E-14 96.0 13.4 184 45-228 49-313 (379)
29 cd07385 MPP_YkuE_C Bacillus su 99.1 1.8E-09 3.8E-14 89.8 12.1 149 50-231 2-171 (223)
30 cd00838 MPP_superfamily metall 98.9 1.6E-08 3.5E-13 75.5 9.7 94 75-229 21-118 (131)
31 KOG3770 Acid sphingomyelinase 98.9 3.8E-08 8.2E-13 91.0 13.4 155 68-229 197-407 (577)
32 cd07379 MPP_239FB Homo sapiens 98.9 1.3E-08 2.9E-13 78.4 8.4 114 51-227 1-117 (135)
33 PF14582 Metallophos_3: Metall 98.8 3.2E-08 7E-13 81.8 8.1 163 51-226 7-218 (255)
34 cd08166 MPP_Cdc1_like_1 unchar 98.7 7.9E-08 1.7E-12 78.6 8.6 111 68-229 30-150 (195)
35 PF12850 Metallophos_2: Calcin 98.7 3.2E-08 7E-13 77.2 5.8 123 50-228 1-123 (156)
36 cd08165 MPP_MPPE1 human MPPE1 98.7 1.4E-07 3E-12 74.7 8.8 102 68-229 26-137 (156)
37 cd07403 MPP_TTHA0053 Thermus t 98.6 1.7E-07 3.6E-12 71.9 7.6 86 78-229 20-106 (129)
38 cd07384 MPP_Cdc1_like Saccharo 98.6 7.8E-08 1.7E-12 77.4 5.9 53 67-119 32-98 (171)
39 cd07397 MPP_DevT Myxococcus xa 98.6 2.8E-06 6.1E-11 71.7 14.1 62 50-120 1-62 (238)
40 cd08164 MPP_Ted1 Saccharomyces 98.5 4.8E-07 1E-11 73.9 8.6 33 180-231 129-161 (193)
41 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.4 1.7E-05 3.7E-10 68.1 14.4 169 53-225 2-227 (262)
42 COG1768 Predicted phosphohydro 98.4 7.5E-06 1.6E-10 65.5 11.2 140 79-229 42-204 (230)
43 cd07410 MPP_CpdB_N Escherichia 98.3 2.4E-05 5.2E-10 67.5 13.9 63 159-226 167-230 (277)
44 TIGR01854 lipid_A_lpxH UDP-2,3 98.3 6.5E-06 1.4E-10 69.2 9.6 27 205-231 176-202 (231)
45 COG2129 Predicted phosphoester 98.2 4.6E-05 1E-09 63.1 12.9 164 49-224 3-185 (226)
46 PF09423 PhoD: PhoD-like phosp 98.2 2.6E-05 5.5E-10 72.0 12.0 82 135-216 262-365 (453)
47 cd00841 MPP_YfcE Escherichia c 98.2 5.9E-06 1.3E-10 64.8 6.7 57 51-119 1-57 (155)
48 PRK05340 UDP-2,3-diacylglucosa 98.1 3.3E-06 7.2E-11 71.4 5.1 69 51-121 2-83 (241)
49 cd07408 MPP_SA0022_N Staphyloc 98.0 0.00036 7.7E-09 59.6 14.5 149 66-226 24-213 (257)
50 PHA02546 47 endonuclease subun 97.9 1.7E-05 3.7E-10 70.5 6.0 70 51-120 2-88 (340)
51 PRK10966 exonuclease subunit S 97.9 3E-05 6.5E-10 70.6 7.3 70 51-120 2-86 (407)
52 cd07382 MPP_DR1281 Deinococcus 97.9 0.00043 9.3E-09 59.2 13.8 69 51-123 1-72 (255)
53 COG0420 SbcD DNA repair exonuc 97.9 2.1E-05 4.5E-10 71.2 5.8 70 51-120 2-87 (390)
54 PRK09558 ushA bifunctional UDP 97.9 0.00049 1.1E-08 65.1 14.8 172 46-225 31-256 (551)
55 TIGR00619 sbcd exonuclease Sbc 97.9 2.3E-05 5E-10 66.9 5.2 70 51-120 2-87 (253)
56 cd07411 MPP_SoxB_N Thermus the 97.8 0.00041 8.8E-09 59.5 12.3 43 168-226 176-219 (264)
57 cd00845 MPP_UshA_N_like Escher 97.8 0.00094 2E-08 56.5 14.2 70 50-121 1-82 (252)
58 cd07406 MPP_CG11883_N Drosophi 97.8 0.00038 8.2E-09 59.5 11.8 142 66-226 24-207 (257)
59 TIGR00583 mre11 DNA repair pro 97.8 6.2E-05 1.4E-09 68.4 7.1 43 48-90 2-52 (405)
60 KOG3662 Cell division control 97.8 0.00066 1.4E-08 61.2 13.4 102 47-149 46-185 (410)
61 cd07412 MPP_YhcR_N Bacillus su 97.7 0.0013 2.9E-08 57.1 13.9 64 160-226 176-241 (288)
62 COG1408 Predicted phosphohydro 97.7 0.00024 5.3E-09 61.6 8.9 75 45-121 40-118 (284)
63 PRK09453 phosphodiesterase; Pr 97.7 0.00013 2.7E-09 59.0 6.3 66 51-120 2-75 (182)
64 TIGR00040 yfcE phosphoesterase 97.6 0.0001 2.2E-09 58.1 5.6 61 51-120 2-63 (158)
65 cd07394 MPP_Vps29 Homo sapiens 97.6 0.001 2.3E-08 53.7 11.5 63 52-120 2-64 (178)
66 PRK00166 apaH diadenosine tetr 97.6 8.5E-05 1.8E-09 64.2 4.8 64 51-119 2-67 (275)
67 cd07391 MPP_PF1019 Pyrococcus 97.5 0.0002 4.2E-09 57.4 6.0 57 66-122 27-89 (172)
68 TIGR00282 metallophosphoestera 97.5 0.0034 7.4E-08 54.0 13.7 70 51-124 2-74 (266)
69 COG3540 PhoD Phosphodiesterase 97.5 0.00025 5.3E-09 64.6 6.6 83 134-216 299-406 (522)
70 cd07422 MPP_ApaH Escherichia c 97.5 0.00014 3E-09 62.3 4.7 64 53-119 2-65 (257)
71 cd07405 MPP_UshA_N Escherichia 97.5 0.0049 1.1E-07 53.5 14.2 56 168-226 166-221 (285)
72 cd07398 MPP_YbbF-LpxH Escheric 97.5 0.00052 1.1E-08 56.5 7.7 29 201-229 176-204 (217)
73 cd07390 MPP_AQ1575 Aquifex aeo 97.5 0.00023 5.1E-09 56.8 5.4 40 79-119 41-80 (168)
74 cd07409 MPP_CD73_N CD73 ecto-5 97.4 0.0057 1.2E-07 52.9 14.2 144 66-226 35-218 (281)
75 PHA02239 putative protein phos 97.4 0.0003 6.5E-09 59.4 6.0 66 51-119 2-71 (235)
76 TIGR00024 SbcD_rel_arch putati 97.4 0.00024 5.2E-09 59.7 5.3 54 67-120 45-101 (225)
77 cd07407 MPP_YHR202W_N Saccharo 97.4 0.01 2.2E-07 51.5 15.0 52 165-225 177-230 (282)
78 PRK09419 bifunctional 2',3'-cy 97.3 0.015 3.2E-07 59.9 17.8 60 161-226 220-280 (1163)
79 cd07424 MPP_PrpA_PrpB PrpA and 97.3 0.00035 7.5E-09 57.7 4.9 64 51-119 2-65 (207)
80 PRK09419 bifunctional 2',3'-cy 97.2 0.011 2.4E-07 60.8 15.4 168 47-226 658-882 (1163)
81 TIGR00668 apaH bis(5'-nucleosy 97.2 0.00043 9.3E-09 59.7 4.4 64 51-119 2-67 (279)
82 PRK09418 bifunctional 2',3'-cy 97.2 0.032 7E-07 54.9 17.6 58 162-226 231-289 (780)
83 TIGR01530 nadN NAD pyrophospha 97.1 0.012 2.6E-07 55.7 14.0 144 66-226 35-218 (550)
84 COG0737 UshA 5'-nucleotidase/2 97.1 0.014 3.1E-07 54.8 13.8 170 45-224 22-245 (517)
85 PRK11439 pphA serine/threonine 97.1 0.00067 1.5E-08 56.5 4.4 62 51-119 18-81 (218)
86 COG1407 Predicted ICC-like pho 96.9 0.0015 3.3E-08 54.8 4.6 57 64-120 47-109 (235)
87 cd00144 MPP_PPP_family phospho 96.8 0.00087 1.9E-08 55.6 3.1 64 53-120 1-67 (225)
88 cd07413 MPP_PA3087 Pseudomonas 96.8 0.0011 2.4E-08 55.5 3.6 64 52-120 1-75 (222)
89 cd07425 MPP_Shelphs Shewanella 96.8 0.001 2.2E-08 55.1 3.0 41 79-119 31-78 (208)
90 cd07421 MPP_Rhilphs Rhilph pho 96.8 0.0025 5.3E-08 55.5 5.3 64 51-119 3-78 (304)
91 TIGR01390 CycNucDiestase 2',3' 96.7 0.051 1.1E-06 52.4 14.6 58 162-226 182-240 (626)
92 PRK09968 serine/threonine-spec 96.7 0.002 4.4E-08 53.7 4.5 65 51-120 16-80 (218)
93 PRK13625 bis(5'-nucleosyl)-tet 96.7 0.0015 3.3E-08 55.4 3.5 64 51-119 2-77 (245)
94 cd07380 MPP_CWF19_N Schizosacc 96.7 0.0042 9.1E-08 48.9 5.4 64 53-119 1-68 (150)
95 cd07386 MPP_DNA_pol_II_small_a 96.6 0.0041 9E-08 52.5 5.8 41 80-120 35-93 (243)
96 cd07423 MPP_PrpE Bacillus subt 96.5 0.0023 5.1E-08 53.8 3.5 65 51-120 2-79 (234)
97 PRK09420 cpdB bifunctional 2', 96.5 0.12 2.6E-06 50.0 15.2 60 160-226 203-263 (649)
98 cd08162 MPP_PhoA_N Synechococc 95.8 0.39 8.6E-06 42.3 13.8 48 164-226 196-244 (313)
99 COG1692 Calcineurin-like phosp 95.7 0.34 7.3E-06 41.0 12.3 67 50-121 1-71 (266)
100 PRK04036 DNA polymerase II sma 95.6 0.034 7.3E-07 52.2 6.7 75 46-120 240-342 (504)
101 PRK11907 bifunctional 2',3'-cy 95.5 0.41 9E-06 47.5 14.1 58 162-226 296-354 (814)
102 KOG2310 DNA repair exonuclease 95.5 0.044 9.5E-07 51.0 6.7 43 47-90 11-62 (646)
103 KOG4419 5' nucleotidase [Nucle 95.2 0.42 9E-06 45.2 12.4 56 161-226 211-269 (602)
104 cd07420 MPP_RdgC Drosophila me 95.0 0.019 4E-07 50.8 3.0 64 51-119 52-121 (321)
105 cd07389 MPP_PhoD Bacillus subt 94.6 0.37 8.1E-06 39.9 9.7 43 135-183 156-199 (228)
106 COG0622 Predicted phosphoester 94.6 0.12 2.6E-06 41.6 6.3 60 51-119 3-63 (172)
107 COG4186 Predicted phosphoester 94.5 0.047 1E-06 43.0 3.7 46 75-120 39-85 (186)
108 cd07418 MPP_PP7 PP7, metalloph 94.3 0.043 9.4E-07 49.5 3.5 65 51-120 67-137 (377)
109 cd07417 MPP_PP5_C PP5, C-termi 94.0 0.043 9.4E-07 48.4 3.0 65 50-119 60-130 (316)
110 cd07416 MPP_PP2B PP2B, metallo 93.3 0.096 2.1E-06 46.0 3.9 63 51-119 44-112 (305)
111 COG2908 Uncharacterized protei 93.2 0.09 2E-06 44.2 3.4 26 202-227 175-200 (237)
112 smart00156 PP2Ac Protein phosp 92.9 0.12 2.5E-06 44.7 3.7 63 51-119 29-97 (271)
113 PTZ00480 serine/threonine-prot 92.0 0.19 4.1E-06 44.4 4.0 64 51-120 60-129 (320)
114 PF13277 YmdB: YmdB-like prote 91.6 3 6.5E-05 35.6 10.5 65 53-122 1-69 (253)
115 PTZ00244 serine/threonine-prot 91.6 0.12 2.7E-06 45.1 2.3 62 52-119 54-121 (294)
116 cd07415 MPP_PP2A_PP4_PP6 PP2A, 91.5 0.18 3.9E-06 43.8 3.2 63 51-119 43-111 (285)
117 cd07414 MPP_PP1_PPKL PP1, PPKL 91.1 0.21 4.6E-06 43.6 3.2 64 51-120 51-120 (293)
118 cd07419 MPP_Bsu1_C Arabidopsis 90.7 0.29 6.3E-06 43.1 3.8 21 203-223 242-262 (311)
119 PTZ00239 serine/threonine prot 89.8 0.38 8.3E-06 42.2 3.7 63 51-119 44-112 (303)
120 KOG2863 RNA lariat debranching 89.2 4.6 9.9E-05 36.3 9.8 41 79-119 29-86 (456)
121 PF09587 PGA_cap: Bacterial ca 88.2 14 0.00031 31.0 13.1 56 163-224 169-226 (250)
122 cd07381 MPP_CapA CapA and rela 87.0 10 0.00022 31.6 10.6 43 176-224 175-217 (239)
123 KOG2476 Uncharacterized conser 81.8 4 8.8E-05 37.7 6.1 64 50-118 6-75 (528)
124 COG1311 HYS2 Archaeal DNA poly 79.9 7.4 0.00016 36.2 7.1 76 43-119 219-319 (481)
125 COG1927 Mtd Coenzyme F420-depe 77.3 11 0.00023 31.4 6.7 66 45-114 27-93 (277)
126 PF04042 DNA_pol_E_B: DNA poly 73.4 6.2 0.00013 32.1 4.5 42 78-119 29-89 (209)
127 PRK00994 F420-dependent methyl 73.3 13 0.00028 31.5 6.3 67 45-115 27-94 (277)
128 KOG3947 Phosphoesterases [Gene 67.7 10 0.00022 32.8 4.6 66 44-119 56-124 (305)
129 PTZ00235 DNA polymerase epsilo 66.5 22 0.00048 31.0 6.5 70 47-119 25-120 (291)
130 PF03808 Glyco_tran_WecB: Glyc 63.2 39 0.00084 26.8 7.1 56 161-226 58-113 (172)
131 KOG0371 Serine/threonine prote 62.7 8.8 0.00019 33.0 3.3 68 45-119 55-129 (319)
132 cd07387 MPP_PolD2_C PolD2 (DNA 62.5 19 0.00041 30.9 5.4 12 108-119 94-105 (257)
133 KOG0374 Serine/threonine speci 61.3 10 0.00022 33.8 3.6 63 51-119 60-129 (331)
134 PF01993 MTD: methylene-5,6,7, 61.0 20 0.00042 30.5 5.0 69 44-115 25-93 (276)
135 cd01137 PsaA Metal binding pro 54.9 27 0.00059 30.2 5.2 28 201-228 213-240 (287)
136 PF10731 Anophelin: Thrombin i 54.3 16 0.00035 23.9 2.7 24 11-35 5-28 (65)
137 PF07819 PGAP1: PGAP1-like pro 52.7 37 0.00081 28.2 5.5 74 107-184 3-92 (225)
138 smart00854 PGA_cap Bacterial c 49.9 70 0.0015 26.6 6.8 53 164-224 163-215 (239)
139 COG2949 SanA Uncharacterized m 49.8 52 0.0011 27.4 5.7 27 65-92 79-105 (235)
140 COG2087 CobU Adenosyl cobinami 49.4 1.3E+02 0.0028 24.2 7.7 70 159-228 104-173 (175)
141 PRK00207 sulfur transfer compl 49.1 70 0.0015 24.2 6.0 61 160-220 17-78 (128)
142 PRK14347 lipoate-protein ligas 48.9 36 0.00077 28.3 4.7 38 158-195 15-52 (209)
143 cd06533 Glyco_transf_WecG_TagA 48.0 62 0.0013 25.6 5.9 56 161-226 56-111 (171)
144 COG2237 Predicted membrane pro 45.9 63 0.0014 29.1 6.0 48 47-94 64-112 (364)
145 PRK14341 lipoate-protein ligas 43.8 43 0.00094 27.9 4.4 36 160-195 19-54 (213)
146 COG1646 Predicted phosphate-bi 43.7 49 0.0011 28.0 4.7 43 77-119 38-81 (240)
147 PF06291 Lambda_Bor: Bor prote 41.3 25 0.00054 25.5 2.3 12 20-31 12-23 (97)
148 KOG0372 Serine/threonine speci 41.2 43 0.00094 28.7 4.0 63 51-119 44-112 (303)
149 PF09949 DUF2183: Uncharacteri 40.9 37 0.00079 24.7 3.2 27 70-96 53-79 (100)
150 TIGR02707 butyr_kinase butyrat 40.4 48 0.001 29.7 4.5 50 69-119 280-331 (351)
151 COG2875 CobM Precorrin-4 methy 39.5 37 0.0008 28.8 3.4 53 66-119 62-114 (254)
152 PRK10834 vancomycin high tempe 38.9 2.2E+02 0.0049 24.1 8.1 40 51-91 47-92 (239)
153 TIGR03012 sulf_tusD_dsrE sulfu 36.0 1.5E+02 0.0033 22.2 6.1 66 160-225 16-87 (127)
154 PRK10081 entericidin B membran 35.8 31 0.00068 21.6 1.8 16 12-27 9-24 (48)
155 COG2069 CdhD CO dehydrogenase/ 35.4 1.2E+02 0.0026 26.8 5.9 62 162-227 151-212 (403)
156 COG2086 FixA Electron transfer 34.7 80 0.0017 27.1 4.8 49 64-113 95-143 (260)
157 PRK14348 lipoate-protein ligas 33.9 84 0.0018 26.3 4.7 41 158-198 15-60 (221)
158 PF01784 NIF3: NIF3 (NGG1p int 33.8 50 0.0011 27.7 3.4 41 178-220 54-94 (241)
159 PRK00955 hypothetical protein; 33.6 1.1E+02 0.0024 29.8 6.0 30 160-189 106-136 (620)
160 COG5510 Predicted small secret 32.5 54 0.0012 20.0 2.4 17 11-27 8-24 (44)
161 PF06925 MGDG_synth: Monogalac 32.1 26 0.00056 27.5 1.3 30 202-231 77-107 (169)
162 cd02071 MM_CoA_mut_B12_BD meth 32.0 18 0.00039 26.9 0.4 27 208-234 96-122 (122)
163 PRK03692 putative UDP-N-acetyl 31.8 2.4E+02 0.0052 23.9 7.2 54 162-226 116-169 (243)
164 PF00448 SRP54: SRP54-type pro 30.5 87 0.0019 25.4 4.2 117 52-183 4-121 (196)
165 PF00762 Ferrochelatase: Ferro 30.0 1.3E+02 0.0028 26.5 5.5 65 159-229 130-198 (316)
166 PF13721 SecD-TM1: SecD export 29.8 85 0.0018 22.7 3.6 26 1-26 1-26 (101)
167 PHA03008 hypothetical protein; 29.6 30 0.00065 28.5 1.3 46 178-229 162-211 (234)
168 PF13481 AAA_25: AAA domain; P 29.6 2.7E+02 0.0059 21.7 7.3 64 161-224 126-189 (193)
169 KOG3724 Negative regulator of 29.6 1.3E+02 0.0028 30.2 5.7 78 104-185 85-190 (973)
170 PRK03011 butyrate kinase; Prov 28.7 97 0.0021 27.9 4.5 48 71-119 284-333 (358)
171 KOG3339 Predicted glycosyltran 28.6 3.3E+02 0.0072 22.4 8.8 64 50-119 40-105 (211)
172 KOG1220 Phosphoglucomutase/pho 28.6 1.4E+02 0.003 28.7 5.6 62 162-232 85-148 (607)
173 PRK10425 DNase TatD; Provision 28.5 98 0.0021 26.3 4.4 97 77-186 25-129 (258)
174 PRK13738 conjugal transfer pil 28.4 77 0.0017 26.3 3.6 23 160-182 130-153 (209)
175 COG1553 DsrE Uncharacterized c 28.0 2.3E+02 0.0051 21.5 5.7 65 162-226 19-89 (126)
176 PRK02261 methylaspartate mutas 27.9 84 0.0018 24.0 3.5 62 162-233 69-131 (137)
177 TIGR03850 bind_CPR_0540 carboh 27.3 3.2E+02 0.007 24.4 7.9 39 11-58 6-44 (437)
178 PF14529 Exo_endo_phos_2: Endo 27.2 2E+02 0.0044 20.2 5.4 53 160-217 14-70 (119)
179 PRK14346 lipoate-protein ligas 26.8 1.2E+02 0.0025 25.6 4.4 37 159-196 16-52 (230)
180 cd02191 FtsZ FtsZ is a GTPase 26.7 3.9E+02 0.0084 23.3 7.9 11 135-145 25-35 (303)
181 COG1922 WecG Teichoic acid bio 26.6 2.7E+02 0.0058 23.8 6.6 55 162-226 119-173 (253)
182 TIGR00109 hemH ferrochelatase. 26.2 2.2E+02 0.0048 25.0 6.4 64 160-229 135-203 (322)
183 PRK14345 lipoate-protein ligas 26.1 98 0.0021 26.2 3.9 37 158-194 24-60 (234)
184 KOG3076 5'-phosphoribosylglyci 26.0 1E+02 0.0022 25.3 3.7 36 178-222 60-95 (206)
185 cd01832 SGNH_hydrolase_like_1 25.8 3.1E+02 0.0067 21.0 7.3 19 200-218 131-149 (185)
186 cd07394 MPP_Vps29 Homo sapiens 25.8 1.7E+02 0.0037 23.2 5.1 42 177-227 78-119 (178)
187 PF02350 Epimerase_2: UDP-N-ac 25.5 63 0.0014 28.7 2.8 45 68-117 55-100 (346)
188 COG3562 KpsS Capsule polysacch 25.2 2.6E+02 0.0056 25.2 6.4 58 161-226 250-312 (403)
189 PRK14349 lipoate-protein ligas 25.0 1.5E+02 0.0032 24.8 4.7 37 159-196 14-50 (220)
190 COG0276 HemH Protoheme ferro-l 24.9 2.2E+02 0.0048 25.3 6.0 64 160-229 133-199 (320)
191 cd01019 ZnuA Zinc binding prot 24.4 1.7E+02 0.0037 25.2 5.2 27 202-228 216-242 (286)
192 TIGR00065 ftsZ cell division p 24.1 4.9E+02 0.011 23.3 8.2 11 135-145 42-52 (349)
193 PF04123 DUF373: Domain of unk 23.7 2.2E+02 0.0047 25.6 5.7 47 47-93 64-111 (344)
194 PF11215 DUF3010: Protein of u 23.7 2E+02 0.0042 22.3 4.7 33 195-227 42-75 (138)
195 COG0488 Uup ATPase components 23.3 1E+02 0.0022 29.3 3.8 41 136-187 171-211 (530)
196 PRK10494 hypothetical protein; 23.3 2.5E+02 0.0054 23.9 5.9 9 51-59 81-89 (259)
197 PRK10533 putative lipoprotein; 23.2 93 0.002 24.7 2.9 26 12-37 6-31 (171)
198 TIGR00486 YbgI_SA1388 dinuclea 23.1 96 0.0021 26.2 3.3 40 178-220 58-97 (249)
199 PLN02790 transketolase 22.9 2E+02 0.0043 28.1 5.8 68 48-119 137-212 (654)
200 PTZ00089 transketolase; Provis 22.8 2.1E+02 0.0045 28.1 5.9 69 48-119 148-223 (661)
201 KOG3332 N-acetylglucosaminyl p 22.7 4.7E+02 0.01 22.1 7.6 41 179-220 102-142 (247)
202 cd03413 CbiK_C Anaerobic cobal 22.6 1.1E+02 0.0023 22.2 3.1 64 52-119 3-72 (103)
203 COG2998 TupB ABC-type tungstat 22.5 3.1E+02 0.0066 23.4 6.0 65 51-119 110-180 (280)
204 PHA00407 phage lambda Rz1-like 22.0 1E+02 0.0022 21.3 2.6 22 6-27 30-51 (84)
205 PF04677 CwfJ_C_1: Protein sim 21.8 2E+02 0.0044 21.5 4.5 42 182-223 53-94 (121)
206 COG0381 WecB UDP-N-acetylgluco 21.7 1E+02 0.0022 28.1 3.3 48 66-118 78-127 (383)
207 cd01016 TroA Metal binding pro 21.6 2.2E+02 0.0049 24.2 5.4 26 201-226 197-222 (276)
208 TIGR01143 murF UDP-N-acetylmur 21.5 1.7E+02 0.0036 26.6 4.8 38 82-119 325-366 (417)
209 PRK12435 ferrochelatase; Provi 21.5 3E+02 0.0065 24.2 6.2 15 215-229 175-189 (311)
210 cd01018 ZntC Metal binding pro 21.5 3.8E+02 0.0082 22.6 6.7 29 201-229 204-232 (266)
211 PF05990 DUF900: Alpha/beta hy 21.3 4.1E+02 0.0089 22.0 6.8 23 162-184 3-25 (233)
212 cd01017 AdcA Metal binding pro 21.2 2.6E+02 0.0056 23.9 5.7 27 202-228 208-234 (282)
213 PRK10799 metal-binding protein 21.2 1.4E+02 0.0031 25.1 4.0 39 179-220 58-96 (247)
214 PRK09810 entericidin A; Provis 21.1 1.1E+02 0.0024 18.4 2.4 12 16-27 10-21 (41)
215 PRK09545 znuA high-affinity zi 21.0 2E+02 0.0044 25.1 5.1 28 201-228 239-266 (311)
216 PF02283 CobU: Cobinamide kina 21.0 4.2E+02 0.0091 20.9 6.9 28 201-228 140-167 (167)
217 PF08139 LPAM_1: Prokaryotic m 20.8 1E+02 0.0022 16.5 1.9 14 13-26 11-24 (25)
218 TIGR02743 TraW type-F conjugat 20.4 1.2E+02 0.0026 25.0 3.2 17 159-175 131-147 (202)
219 KOG0373 Serine/threonine speci 20.3 1.6E+02 0.0035 24.9 3.9 63 52-119 48-115 (306)
220 TIGR03772 anch_rpt_subst ancho 20.2 4.5E+02 0.0097 24.7 7.3 26 201-226 407-432 (479)
No 1
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=1e-34 Score=257.60 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=141.1
Q ss_pred CccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCC------CCCchhhHhhhhc---cCC--CCCCeEEe
Q 026711 47 GLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSEL------GEDDPLKQNATWL---FPS--LKVPWYTT 114 (234)
Q Consensus 47 ~~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~------~~~d~~~~~~~~~---~~~--l~~P~~~v 114 (234)
...++|+++|| | +|...|..++++|.+++++.++||||.+||| +.+|++|++.|+. .++ +++|||+|
T Consensus 24 ~~~l~F~~vGDwG-~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~v 102 (394)
T PTZ00422 24 KAQLRFASLGNWG-TGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTV 102 (394)
T ss_pred CCeEEEEEEecCC-CCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEe
Confidence 35789999999 8 4788999999999999999999999999998 4679999998886 344 89999999
Q ss_pred cccCCCcccCc----------------------------eEEEeCCC-----------------------CCceEEEEEe
Q 026711 115 KASKEKEVGCF----------------------------QEQIRLPH-----------------------GEALDIIGVN 143 (234)
Q Consensus 115 ~GNHD~~~g~~----------------------------~~~~~~P~-----------------------~~~~~~i~lD 143 (234)
+|||| +.|+. ..+|.||. +..+.|++||
T Consensus 103 LGNHD-y~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiD 181 (394)
T PTZ00422 103 LGQAD-WDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFID 181 (394)
T ss_pred CCccc-ccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEE
Confidence 99999 55541 12577773 2348999999
Q ss_pred CCCCcCCCCCCCCCCcHHHHHHHHHHHHHhcc--CCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEe
Q 026711 144 TGSLQGKIPTALPSASGDLLLNWLKSALEATN--GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFI 221 (234)
Q Consensus 144 T~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~--~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~ 221 (234)
|+++...+. +.+...++++||+++|+.++ ++|+||++|||+||.+.|+.+.+ +...|+|||++|+||+|||+
T Consensus 182 T~~l~~~~~---~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~~~---L~~~L~PLL~ky~VdlYisG 255 (394)
T PTZ00422 182 TWILSSSFP---YKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGDSY---LSYYLLPLLKDAQVDLYISG 255 (394)
T ss_pred CchhcccCC---ccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCCHH---HHHHHHHHHHHcCcCEEEEc
Confidence 998765432 23346689999999997543 57999999999999998776554 67789999999999999999
Q ss_pred cCcCCee
Q 026711 222 FSIPGKI 228 (234)
Q Consensus 222 ~~~~~~~ 228 (234)
|-|=.+-
T Consensus 256 HDH~lq~ 262 (394)
T PTZ00422 256 YDRNMEV 262 (394)
T ss_pred cccceEE
Confidence 8875443
No 2
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-34 Score=237.14 Aligned_cols=207 Identities=24% Similarity=0.328 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCcccccccCCCCCCCCCccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEE
Q 026711 8 VCTLITQLSLCLALYVALNLGQPQKSIYQRTNGISSNRKGLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVIN 86 (234)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~ 86 (234)
...+++..+++++++++|....--.+-. -+...+..++|+++|| |.++...|..++.+|.++++..+.||||.
T Consensus 8 ~~~~~~~i~t~f~I~~~~~s~~eLp~l~------~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS 81 (336)
T KOG2679|consen 8 PFSLLFGILTIFFILSAISSTAELPRLY------DPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLS 81 (336)
T ss_pred ceeehHHHHHHHHHhhccchhhhhhhhc------CCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEe
Confidence 3445566666666666553221111111 0134567899999999 98899999999999999999999999999
Q ss_pred cCCC-------CCCchhhHhhhhc---cCCCCCCeEEecccCCCcccCceEE-----------EeCCC-----CCceEEE
Q 026711 87 TSEL-------GEDDPLKQNATWL---FPSLKVPWYTTKASKEKEVGCFQEQ-----------IRLPH-----GEALDII 140 (234)
Q Consensus 87 ~GD~-------~~~d~~~~~~~~~---~~~l~~P~~~v~GNHD~~~g~~~~~-----------~~~P~-----~~~~~~i 140 (234)
+||| ++.|++++..|+. .++|+.|||.++|||| ++|+-.++ |..|. ..-+.+.
T Consensus 82 ~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHD-yrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f 160 (336)
T KOG2679|consen 82 TGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNHD-YRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMF 160 (336)
T ss_pred cCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhccCcc-ccCchhhhhhHHHHhhccceecccHHhhcceeeeee
Confidence 9998 4678999988875 6788999999999999 99884333 55552 3457777
Q ss_pred EEeCCCCcCCC---------CCCC---CCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHH
Q 026711 141 GVNTGSLQGKI---------PTAL---PSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHH 208 (234)
Q Consensus 141 ~lDT~~~~~~~---------~~~~---~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ 208 (234)
++||..+..++ +..+ .......++.||+..|+++.++|+||++|||+-+.+.|+.+.+ +.+.|.|
T Consensus 161 ~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG~T~e---L~~~LlP 237 (336)
T KOG2679|consen 161 FVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKASRAKWKIVVGHHPIKSAGHHGPTKE---LEKQLLP 237 (336)
T ss_pred ccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHHhhcceEEEecccceehhhccCChHH---HHHHHHH
Confidence 88887665322 1111 1345677899999999999999999999999999999987766 7888999
Q ss_pred HHHHhCccEEEEecCc
Q 026711 209 IFMKFGVVRSFFIFSI 224 (234)
Q Consensus 209 ll~k~~Vd~vf~~~~~ 224 (234)
||++++||+|+|+|-|
T Consensus 238 iL~~n~VdlY~nGHDH 253 (336)
T KOG2679|consen 238 ILEANGVDLYINGHDH 253 (336)
T ss_pred HHHhcCCcEEEecchh
Confidence 9999999999998755
No 3
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.96 E-value=6.6e-28 Score=207.52 Aligned_cols=176 Identities=22% Similarity=0.352 Sum_probs=132.5
Q ss_pred EEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCC-------CCchhhHhhhhc-cCC--CCCCeEEecccC
Q 026711 50 FYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG-------EDDPLKQNATWL-FPS--LKVPWYTTKASK 118 (234)
Q Consensus 50 ~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~-------~~d~~~~~~~~~-~~~--l~~P~~~v~GNH 118 (234)
++|+++|| |..+...|+.++++|.+.+++.+|||||++||+. +.+..|.+.++. +.. +++|++++||||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 48999999 8655678899999999988888999999999972 123455544432 322 689999999999
Q ss_pred CCcccCce-----------EEEeCCC------------CCceEEEEEeCCCCcCCCCC------CCCCCcHHHHHHHHHH
Q 026711 119 EKEVGCFQ-----------EQIRLPH------------GEALDIIGVNTGSLQGKIPT------ALPSASGDLLLNWLKS 169 (234)
Q Consensus 119 D~~~g~~~-----------~~~~~P~------------~~~~~~i~lDT~~~~~~~~~------~~~~~~~~~ql~wL~~ 169 (234)
| ..+++. .++.+|. +++++||+|||+.+...+.. ...+....+|++||++
T Consensus 81 D-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~ 159 (277)
T cd07378 81 D-YSGNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEK 159 (277)
T ss_pred c-cCCCchheeehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHH
Confidence 9 433321 1122331 24799999999976543311 1235678999999999
Q ss_pred HHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeee
Q 026711 170 ALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIV 229 (234)
Q Consensus 170 ~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~ 229 (234)
+|++++++|+||++|||+++.+.+..+ ...++.|.+++++|+|+++||+|.|.....
T Consensus 160 ~L~~~~~~~~iv~~H~P~~~~~~~~~~---~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~ 216 (277)
T cd07378 160 TLAASTADWKIVVGHHPIYSSGEHGPT---SCLVDRLLPLLKKYKVDAYLSGHDHNLQHI 216 (277)
T ss_pred HHHhcCCCeEEEEeCccceeCCCCCCc---HHHHHHHHHHHHHcCCCEEEeCCcccceee
Confidence 999998899999999999987654432 235788999999999999999999876544
No 4
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.92 E-value=9.4e-25 Score=189.32 Aligned_cols=170 Identities=18% Similarity=0.267 Sum_probs=116.9
Q ss_pred ccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCC---Cc--hhhHhhhhccCCC--CCCeEEecccCC
Q 026711 48 LDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE---DD--PLKQNATWLFPSL--KVPWYTTKASKE 119 (234)
Q Consensus 48 ~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~---~d--~~~~~~~~~~~~l--~~P~~~v~GNHD 119 (234)
..++|+++|| |..+... ....+.+.+. ..+|||||++||+.. .. .+|...++.+..+ .+|++++|||||
T Consensus 3 ~~~~f~v~gD~~~~~~~~-~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD 79 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNS-TNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHE 79 (294)
T ss_pred CcEEEEEEEECCCCCCCc-HHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccc
Confidence 5789999999 6422222 3333433322 478999999999842 11 4566655544433 799999999999
Q ss_pred CcccC----ceEE----EeCC--------------CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccC-
Q 026711 120 KEVGC----FQEQ----IRLP--------------HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNG- 176 (234)
Q Consensus 120 ~~~g~----~~~~----~~~P--------------~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~- 176 (234)
+... +... +.++ .-++++||+|||..... .+....+|++||+++|+++++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~------~~~~~~~q~~WL~~~L~~~~~~ 152 (294)
T cd00839 80 -ADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFY------GDGPGSPQYDWLEADLAKVDRS 152 (294)
T ss_pred -cccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccc------cCCCCcHHHHHHHHHHHHhccc
Confidence 3221 1110 1111 12679999999975321 124567999999999998755
Q ss_pred --CeEEEEeeccccccCcccch-HHHHHhHHHHHHHHHHhCccEEEEecCcCCe
Q 026711 177 --QWCIVVGFHPLVICEEHEEQ-LEAKKIYEPLHHIFMKFGVVRSFFIFSIPGK 227 (234)
Q Consensus 177 --~~~IV~~HhP~~~~~~~~~~-~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~ 227 (234)
+|+||++|||+|+.+..... ......++.|.++|++|+|+++||+|.|-.+
T Consensus 153 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~ 206 (294)
T cd00839 153 KTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYE 206 (294)
T ss_pred CCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeE
Confidence 69999999999997654332 1234578889999999999999999988754
No 5
>PLN02533 probable purple acid phosphatase
Probab=99.92 E-value=1.9e-24 Score=196.59 Aligned_cols=164 Identities=19% Similarity=0.273 Sum_probs=117.8
Q ss_pred CccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCC---chhhHhhhhccCC--CCCCeEEecccCCC
Q 026711 47 GLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGED---DPLKQNATWLFPS--LKVPWYTTKASKEK 120 (234)
Q Consensus 47 ~~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~---d~~~~~~~~~~~~--l~~P~~~v~GNHD~ 120 (234)
...++|+++|| |.... ... .++++ ++.+|||||++||+... ...|...++.+.. ..+|++++|||||
T Consensus 137 ~~~~~f~v~GDlG~~~~--~~~---tl~~i-~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE- 209 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW--TKS---TLEHV-SKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHE- 209 (427)
T ss_pred CCCeEEEEEEeCCCCcc--cHH---HHHHH-HhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCcccc-
Confidence 45799999999 75421 122 22322 34689999999999532 3467666655333 3799999999999
Q ss_pred ccc----------CceEEEeCCC--------------CCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccC
Q 026711 121 EVG----------CFQEQIRLPH--------------GEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNG 176 (234)
Q Consensus 121 ~~g----------~~~~~~~~P~--------------~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~ 176 (234)
..+ .|.++|.||. -++++||+|||... + ....+|++||+++|++.++
T Consensus 210 ~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~---~------~~~~~Q~~WLe~dL~~~~r 280 (427)
T PLN02533 210 LEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTD---F------EPGSEQYQWLENNLKKIDR 280 (427)
T ss_pred ccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCcc---c------cCchHHHHHHHHHHHhhcc
Confidence 421 2566788883 16789999999631 1 2246899999999998653
Q ss_pred ---CeEEEEeeccccccCccc-chHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 177 ---QWCIVVGFHPLVICEEHE-EQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 177 ---~~~IV~~HhP~~~~~~~~-~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
+|+||++|||+|+.+... .......+++.|++||++|+||++||+|-|-.
T Consensus 281 ~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~Y 334 (427)
T PLN02533 281 KTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAY 334 (427)
T ss_pred cCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecc
Confidence 599999999999876432 22222346778999999999999999988753
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.89 E-value=7.5e-22 Score=168.76 Aligned_cols=178 Identities=18% Similarity=0.188 Sum_probs=114.3
Q ss_pred ccEEEEEEeC---CCCC-C--------hhHHHHHHHHHHHHHhC--CCceEEEcCCCCCC---c----hhhHhhhhccCC
Q 026711 48 LDFYFISVTG---GFRP-L--------EQQTLLLKQMEDVAKSY--DARFVINTSELGED---D----PLKQNATWLFPS 106 (234)
Q Consensus 48 ~~~~F~~~gd---G~~~-~--------~~q~~~~~~i~~~~~~~--~~dfvl~~GD~~~~---d----~~~~~~~~~~~~ 106 (234)
.+++|++++| |..+ . .....+++.+.+..++. +||||+++||+..+ + .+|+...+.++.
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 5789999999 4211 1 01112334444444444 99999999998422 1 123232333444
Q ss_pred C--CCCeEEecccCCCcc-c------CceEEEeCC----CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHh
Q 026711 107 L--KVPWYTTKASKEKEV-G------CFQEQIRLP----HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEA 173 (234)
Q Consensus 107 l--~~P~~~v~GNHD~~~-g------~~~~~~~~P----~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~ 173 (234)
+ .+|+++++||||... . .|...+.-. .-++++||+|||+.+... ........+|++||+++|++
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~---~~~~~~~~~ql~WL~~~L~~ 159 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDP---SEVPELAQAQDVWLEEQLEI 159 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCc---cccccchHHHHHHHHHHHHH
Confidence 4 799999999999321 1 121111100 126799999999854321 11234678999999999998
Q ss_pred cc---CCeEEEEeeccccccCcccch---HHHHHhHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 174 TN---GQWCIVVGFHPLVICEEHEEQ---LEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 174 ~~---~~~~IV~~HhP~~~~~~~~~~---~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
++ .+++||++|||++..+....+ .....++.+|.++|++|+|+++||+|.|....
T Consensus 160 ~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~ 220 (262)
T cd07395 160 AKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAG 220 (262)
T ss_pred HHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCc
Confidence 84 469999999999865432211 01134678899999999999999999997765
No 7
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.88 E-value=3.6e-22 Score=172.14 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=118.1
Q ss_pred ccEEEEEEeCCCCC---------ChhHHHHHHHHHHHHH-hCCCceEEEcCCCCCCc--hhhHhhhhccCCCCCCeEEec
Q 026711 48 LDFYFISVTGGFRP---------LEQQTLLLKQMEDVAK-SYDARFVINTSELGEDD--PLKQNATWLFPSLKVPWYTTK 115 (234)
Q Consensus 48 ~~~~F~~~gdG~~~---------~~~q~~~~~~i~~~~~-~~~~dfvl~~GD~~~~d--~~~~~~~~~~~~l~~P~~~v~ 115 (234)
..++|+.++|-+.. .+....+.++++++.+ ..+|||||++||+..+. ..++...+.+..+++|+|++|
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~ 92 (275)
T PRK11148 13 ARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLP 92 (275)
T ss_pred CCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeC
Confidence 56999999994321 1122345555555533 35799999999996432 234444445777899999999
Q ss_pred ccCCCcccCceE-----EEe----CCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeecc
Q 026711 116 ASKEKEVGCFQE-----QIR----LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (234)
Q Consensus 116 GNHD~~~g~~~~-----~~~----~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP 186 (234)
|||| ....+.+ .+. .-.++++++|+|||...- ...+....+|++||+++|+++++++++|++|||
T Consensus 93 GNHD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~~~g-----~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~ 166 (275)
T PRK11148 93 GNHD-FQPAMYSALQDAGISPAKHVLIGEHWQILLLDSQVFG-----VPHGELSEYQLEWLERKLADAPERHTLVLLHHH 166 (275)
T ss_pred CCCC-ChHHHHHHHhhcCCCccceEEecCCEEEEEecCCCCC-----CcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCC
Confidence 9999 3221110 010 012467899999997421 123567889999999999999888889999887
Q ss_pred ccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 187 LVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
++..+....+....++.++|.+++++| +|+++||+|.|-.
T Consensus 167 P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~ 207 (275)
T PRK11148 167 PLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQE 207 (275)
T ss_pred CCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChH
Confidence 766554333323345678899999999 8999999988753
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.88 E-value=9.4e-22 Score=165.56 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=113.7
Q ss_pred EEEEEeCCCCCC--------hhHHHHHHHHHHHHHh--CCCceEEEcCCCCCC-c-hhhHhhhhccCCCCCCeEEecccC
Q 026711 51 YFISVTGGFRPL--------EQQTLLLKQMEDVAKS--YDARFVINTSELGED-D-PLKQNATWLFPSLKVPWYTTKASK 118 (234)
Q Consensus 51 ~F~~~gdG~~~~--------~~q~~~~~~i~~~~~~--~~~dfvl~~GD~~~~-d-~~~~~~~~~~~~l~~P~~~v~GNH 118 (234)
||++++|-+.+. .......+.+.+..++ .+||+||++||+... . ..|+...+.+..+++|++.++|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 478888833221 1112223333333333 389999999998532 2 234444444667799999999999
Q ss_pred CCcccCceEE------------EeCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeecc
Q 026711 119 EKEVGCFQEQ------------IRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (234)
Q Consensus 119 D~~~g~~~~~------------~~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP 186 (234)
| ..+.+.+. +.. ..++++||++||..... ..+...++|++||++.|+++.++++|+++|||
T Consensus 81 D-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~lds~~~~~-----~~~~~~~~ql~wL~~~L~~~~~~~~il~~H~p 153 (240)
T cd07402 81 D-DRAAMRAVFPELPPAPGFVQYVV-DLGGWRLILLDSSVPGQ-----HGGELCAAQLDWLEAALAEAPDKPTLVFLHHP 153 (240)
T ss_pred C-CHHHHHHhhccccccccccceeE-ecCCEEEEEEeCCCCCC-----cCCEECHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 9 32221111 111 23579999999975321 12456789999999999999888999999999
Q ss_pred ccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCCe
Q 026711 187 LVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPGK 227 (234)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~~ 227 (234)
++..+....+.......+.+.++++++ +|+++||+|.|...
T Consensus 154 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~ 195 (240)
T cd07402 154 PFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPI 195 (240)
T ss_pred CccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchH
Confidence 987653222222233577899999999 99999999999753
No 9
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=7.9e-22 Score=176.20 Aligned_cols=167 Identities=16% Similarity=0.237 Sum_probs=122.9
Q ss_pred CCccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCC----CCchhhHhhhhccC--CCCCCeEEecccC
Q 026711 46 KGLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG----EDDPLKQNATWLFP--SLKVPWYTTKASK 118 (234)
Q Consensus 46 ~~~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~----~~d~~~~~~~~~~~--~l~~P~~~v~GNH 118 (234)
.....+|.++|| |... .+...... ..+..++|+||++||++ ...+.|.+..+..+ ...+||+++.|||
T Consensus 144 ~~~~~~~~i~GDlG~~~--~~~s~~~~---~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNH 218 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTE--PYTSTLRN---QEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNH 218 (452)
T ss_pred ccCceeEEEEccccccc--cccchHhH---HhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccc
Confidence 347789999999 8542 11122222 22334899999999984 22257877776644 4489999999999
Q ss_pred CCcc------cCceEEEeCCCC--------------CceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccC--
Q 026711 119 EKEV------GCFQEQIRLPHG--------------EALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNG-- 176 (234)
Q Consensus 119 D~~~------g~~~~~~~~P~~--------------~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~-- 176 (234)
|... ..|..+|.||.. +.++||+|+|..+. ......+|++||+++|++.++
T Consensus 219 E~d~~~~~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~-------~~~~~~~QY~WL~~dL~~v~r~~ 291 (452)
T KOG1378|consen 219 EIDWPPQPCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYY-------NFLKGTAQYQWLERDLASVDRKK 291 (452)
T ss_pred cccCCCcccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccc-------cccccchHHHHHHHHHHHhcccC
Confidence 9322 236788999931 56899999997543 123456899999999999765
Q ss_pred -CeEEEEeeccccccCc--ccchHHHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 177 -QWCIVVGFHPLVICEE--HEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 177 -~~~IV~~HhP~~~~~~--~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
+|+||++|.|.|++.. +....+....+..|+++|-+|+||++|++|=|
T Consensus 292 tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH 342 (452)
T KOG1378|consen 292 TPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVH 342 (452)
T ss_pred CCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccce
Confidence 5999999999999877 55444434567889999999999999998755
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.85 E-value=1.4e-20 Score=161.60 Aligned_cols=175 Identities=14% Similarity=0.137 Sum_probs=113.1
Q ss_pred EEEEEEeCCCCCCh----------hHHHHHHHHHHHHHhCCCceEEEcCCCCCC-c----hhhHhhhhccCCCCCCeEEe
Q 026711 50 FYFISVTGGFRPLE----------QQTLLLKQMEDVAKSYDARFVINTSELGED-D----PLKQNATWLFPSLKVPWYTT 114 (234)
Q Consensus 50 ~~F~~~gdG~~~~~----------~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~-d----~~~~~~~~~~~~l~~P~~~v 114 (234)
++|++++|.+.+.. .-..+.+++++ .++.+||+||++||+... . ..|+...+.+..+++|++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~-i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v 79 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEE-WNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHV 79 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHH-HHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEe
Confidence 57889998542211 11223444443 445679999999998422 2 33444445577788999999
Q ss_pred cccCCCcccC--ce-----EE-----EeCCCCCceEEEEEeCCCCcCC-CCC------------------------CCCC
Q 026711 115 KASKEKEVGC--FQ-----EQ-----IRLPHGEALDIIGVNTGSLQGK-IPT------------------------ALPS 157 (234)
Q Consensus 115 ~GNHD~~~g~--~~-----~~-----~~~P~~~~~~~i~lDT~~~~~~-~~~------------------------~~~~ 157 (234)
|||||..... +. .. +.. ..++++||++||...... +.. ...+
T Consensus 80 ~GNHD~~~~~~~~~~~~~~~~~~~~yysf-~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 158 (267)
T cd07396 80 LGNHDLYNPSREYLLLYTLLGLGAPYYSF-SPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNG 158 (267)
T ss_pred cCccccccccHhhhhcccccCCCCceEEE-ecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccC
Confidence 9999932111 11 00 111 235799999999643211 000 0125
Q ss_pred CcHHHHHHHHHHHHHhcc--CCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCCee
Q 026711 158 ASGDLLLNWLKSALEATN--GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPGKI 228 (234)
Q Consensus 158 ~~~~~ql~wL~~~L~~~~--~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~~~ 228 (234)
...++|++||+++|+.++ .+++||++|||++..+.. ........+.+.+++++| +|+++||+|-|-...
T Consensus 159 ~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~--~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~ 230 (267)
T cd07396 159 GIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS--PHGLLWNHEEVLSILRAYGCVKACISGHDHEGGY 230 (267)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC--ccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCc
Confidence 677899999999999875 358999999999876531 112223467789999997 899999998876653
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.84 E-value=7.9e-20 Score=156.10 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHHHhCCCceEEEcCCCCC-----------CchhhHhhhhcc---CCC-CCCeEEecccCCCcccC---------c-
Q 026711 71 QMEDVAKSYDARFVINTSELGE-----------DDPLKQNATWLF---PSL-KVPWYTTKASKEKEVGC---------F- 125 (234)
Q Consensus 71 ~i~~~~~~~~~dfvl~~GD~~~-----------~d~~~~~~~~~~---~~l-~~P~~~v~GNHD~~~g~---------~- 125 (234)
.+.+..++.+||+||++||+.. ...+|+..++.+ ..+ ++|++.++||||.+ +. |
T Consensus 24 ~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~-~~~~~~~~~~~~~ 102 (256)
T cd07401 24 FCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLF-NIPSLDSENNYYR 102 (256)
T ss_pred HHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcC-CCCCccchhhHHH
Confidence 3444556789999999999621 112454443332 233 59999999999932 21 1
Q ss_pred --eEEEeCC--------CCCceEEEEEeCCCCcCCCC-CCCCCCcHHHHHHHHHHHHHhcc-CCeEEEEeeccccccCcc
Q 026711 126 --QEQIRLP--------HGEALDIIGVNTGSLQGKIP-TALPSASGDLLLNWLKSALEATN-GQWCIVVGFHPLVICEEH 193 (234)
Q Consensus 126 --~~~~~~P--------~~~~~~~i~lDT~~~~~~~~-~~~~~~~~~~ql~wL~~~L~~~~-~~~~IV~~HhP~~~~~~~ 193 (234)
...+..+ ..++++||+|||..+..... ....+...++|++||+++|++++ ++++||++|||++.....
T Consensus 103 ~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~ 182 (256)
T cd07401 103 KYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTNSNYTIWFGHYPTSTIISP 182 (256)
T ss_pred HhheecCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhcccCCeEEEEEcccchhccCC
Confidence 1111111 13689999999986422110 01125667899999999999875 469999999999764332
Q ss_pred cchHHHHHhHHHHHHHHHHhCccEEEEecCcCCee-ec
Q 026711 194 EEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKI-VP 230 (234)
Q Consensus 194 ~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~-~~ 230 (234)
... ....+.++|++|+|+++||+|.|+... .|
T Consensus 183 ~~~-----~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p 215 (256)
T cd07401 183 SAK-----SSSKFKDLLKKYNVTAYLCGHLHPLGGLEP 215 (256)
T ss_pred Ccc-----hhHHHHHHHHhcCCcEEEeCCccCCCccee
Confidence 111 122388999999999999999999988 54
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.83 E-value=2e-20 Score=155.81 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=99.9
Q ss_pred EEEEEEeCCCCCChh-HH---HHHHHHHHHHHhCCCceEEEcCCCCCC---chhhHhhhhccCC---CCCCeEEecccCC
Q 026711 50 FYFISVTGGFRPLEQ-QT---LLLKQMEDVAKSYDARFVINTSELGED---DPLKQNATWLFPS---LKVPWYTTKASKE 119 (234)
Q Consensus 50 ~~F~~~gdG~~~~~~-q~---~~~~~i~~~~~~~~~dfvl~~GD~~~~---d~~~~~~~~~~~~---l~~P~~~v~GNHD 119 (234)
++|++++|-+.+... .. ...+.+.+.+++.+||+|+++||+... ..+|....+.++. ..+|++++|||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 589999994332221 12 233334444556789999999998532 2356665554444 4599999999999
Q ss_pred CcccCceEEEeCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchH--
Q 026711 120 KEVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQL-- 197 (234)
Q Consensus 120 ~~~g~~~~~~~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~-- 197 (234)
.++.+|+. ...+|++||+++|++++++++||++|||++..+......
T Consensus 81 ------------------~~~~ld~~-------------~~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~ 129 (214)
T cd07399 81 ------------------LVLALEFG-------------PRDEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDY 129 (214)
T ss_pred ------------------chhhCCCC-------------CCHHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCccccc
Confidence 13455553 136899999999999888899999999999765422211
Q ss_pred --HHHHhHHHHHHHHHHh-CccEEEEecCcC
Q 026711 198 --EAKKIYEPLHHIFMKF-GVVRSFFIFSIP 225 (234)
Q Consensus 198 --~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~ 225 (234)
......+.|.+++++| +|+++||+|=|-
T Consensus 130 ~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~ 160 (214)
T cd07399 130 DSDVNDGQQIWDKLVKKNDNVFMVLSGHVHG 160 (214)
T ss_pred ccccccHHHHHHHHHhCCCCEEEEEccccCC
Confidence 0112345688999999 799999988653
No 13
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.77 E-value=6.7e-18 Score=146.86 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHh-CCCceEEEcCCCCCCch-----------hhHhhhhccCC--CCCCeEEecccCCCcccCce------
Q 026711 67 LLLKQMEDVAKS-YDARFVINTSELGEDDP-----------LKQNATWLFPS--LKVPWYTTKASKEKEVGCFQ------ 126 (234)
Q Consensus 67 ~~~~~i~~~~~~-~~~dfvl~~GD~~~~d~-----------~~~~~~~~~~~--l~~P~~~v~GNHD~~~g~~~------ 126 (234)
.+..+++.+.+. .+|||||++||+...+. .++..+..++. .++|+++++||||....++.
T Consensus 54 l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~ 133 (296)
T cd00842 54 LVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSP 133 (296)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccc
Confidence 344444444332 48999999999842211 02222222322 37999999999993321100
Q ss_pred --------E------------------EEeCCCCCceEEEEEeCCCCcCCCCCC--CCCCcHHHHHHHHHHHHHhccC--
Q 026711 127 --------E------------------QIRLPHGEALDIIGVNTGSLQGKIPTA--LPSASGDLLLNWLKSALEATNG-- 176 (234)
Q Consensus 127 --------~------------------~~~~P~~~~~~~i~lDT~~~~~~~~~~--~~~~~~~~ql~wL~~~L~~~~~-- 176 (234)
+ .+.....+++++|+|||+.+....... .......+|++||+++|+++++
T Consensus 134 ~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~ 213 (296)
T cd00842 134 SWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAG 213 (296)
T ss_pred cHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCC
Confidence 0 011111477999999999654321100 1234568999999999998854
Q ss_pred CeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhC--ccEEEEecCcCCeeeccc
Q 026711 177 QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFG--VVRSFFIFSIPGKIVPFL 232 (234)
Q Consensus 177 ~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~--Vd~vf~~~~~~~~~~~~~ 232 (234)
++++|++|||++..+.... ....+.|.+|+++|. |.++|++|.|...|..+-
T Consensus 214 ~~v~I~~HiPp~~~~~~~~----~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~ 267 (296)
T cd00842 214 EKVWIIGHIPPGVNSYDTL----ENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFY 267 (296)
T ss_pred CeEEEEeccCCCCcccccc----hHHHHHHHHHHHHHHHhhheeeecccccceEEEEe
Confidence 4789999999988654321 235778999999996 889999999998887653
No 14
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.69 E-value=3.1e-16 Score=142.11 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=73.2
Q ss_pred CceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccch----HHHHHhHHHHHHHH
Q 026711 135 EALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQ----LEAKKIYEPLHHIF 210 (234)
Q Consensus 135 ~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~----~~~~~~~~~l~~ll 210 (234)
++++||+|||+.....+ .+...++|++||+++|++++.+++||++|||+++.+....+ .....+.++|.++|
T Consensus 300 ggvrfIvLDSt~~~G~~----~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL 375 (496)
T TIGR03767 300 GGVRGISMDTTNRAGGD----EGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLL 375 (496)
T ss_pred CCEEEEEEeCCCcCCCc----CCccCHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccccccccCHHHHHHHH
Confidence 45899999998432222 25678999999999999988889999999999876532221 11223567899999
Q ss_pred HHh-CccEEEEecCcCCeeeccc
Q 026711 211 MKF-GVVRSFFIFSIPGKIVPFL 232 (234)
Q Consensus 211 ~k~-~Vd~vf~~~~~~~~~~~~~ 232 (234)
++| +|.++||+|-|-+.+.++-
T Consensus 376 ~~ypnV~aVfsGHvH~n~i~~~~ 398 (496)
T TIGR03767 376 LEHPNVLAWVNGHTHSNKITAHR 398 (496)
T ss_pred hcCCCceEEEECCcCCCcccccc
Confidence 999 8999999999999988764
No 15
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.67 E-value=1e-15 Score=129.41 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=96.5
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccC-CCCCCeEEecccCCCcccC----ceEEE---eCC------CC
Q 026711 69 LKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFP-SLKVPWYTTKASKEKEVGC----FQEQI---RLP------HG 134 (234)
Q Consensus 69 ~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~-~l~~P~~~v~GNHD~~~g~----~~~~~---~~P------~~ 134 (234)
++++.+..++.++|+||++||+...........+.+. ...+|++.++||||.+.+. +.+.+ .+. .+
T Consensus 21 l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (239)
T TIGR03729 21 LETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDMLKDLTYEEIESNDSPLYLHNRFIDIPN 100 (239)
T ss_pred HHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCCCCCCHHHHHhccchhhhcccccccCC
Confidence 3444444445789999999999643221112222222 2468999999999943221 11100 111 24
Q ss_pred CceEEEEEeCCCCc---C-----------------C-CCC-CCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCc
Q 026711 135 EALDIIGVNTGSLQ---G-----------------K-IPT-ALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEE 192 (234)
Q Consensus 135 ~~~~~i~lDT~~~~---~-----------------~-~~~-~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~ 192 (234)
++++|++++-..-. . . ... ...+...++|++||++.|+++..+.+||++|||+.....
T Consensus 101 ~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~ 180 (239)
T TIGR03729 101 TQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFI 180 (239)
T ss_pred CceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHh
Confidence 67999998732100 0 0 000 011345688999999999998888999999999865211
Q ss_pred -------ccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 193 -------HEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 193 -------~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
.............|.+++++++|++++|+|.|-.
T Consensus 181 ~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~ 221 (239)
T TIGR03729 181 YVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRR 221 (239)
T ss_pred cCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCC
Confidence 1111111123467889999999999999988754
No 16
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.67 E-value=5.4e-16 Score=127.45 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=93.7
Q ss_pred cEEEEEEeC---CCCC-----ChhHHHHHHHHHHHHHhCCCceEEEcCCCCCC-c------hhhHhhhhccCCCCCCeEE
Q 026711 49 DFYFISVTG---GFRP-----LEQQTLLLKQMEDVAKSYDARFVINTSELGED-D------PLKQNATWLFPSLKVPWYT 113 (234)
Q Consensus 49 ~~~F~~~gd---G~~~-----~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~-d------~~~~~~~~~~~~l~~P~~~ 113 (234)
.+++++++| |... ........+.+.+..+..+||+||++||+... . ..|....+.+...++|+++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 81 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAA 81 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence 468899998 3221 11223455666666667899999999998321 1 1222222334556899999
Q ss_pred ecccCCCcccCceEEEeCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhc-----cCCeEEEEeecccc
Q 026711 114 TKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEAT-----NGQWCIVVGFHPLV 188 (234)
Q Consensus 114 v~GNHD~~~g~~~~~~~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~-----~~~~~IV~~HhP~~ 188 (234)
++|||| . ++...++|++||+++|++. ..++.++++|||+.
T Consensus 82 ~~GNHD------------------------~-----------~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~ 126 (199)
T cd07383 82 TFGNHD------------------------G-----------YDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLP 126 (199)
T ss_pred ECccCC------------------------C-----------CCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChH
Confidence 999999 0 1234568999999999986 33689999999998
Q ss_pred ccCcccc----------h-HHHHHhHHHHHHHH-HHhCccEEEEecCcCCee
Q 026711 189 ICEEHEE----------Q-LEAKKIYEPLHHIF-MKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 189 ~~~~~~~----------~-~~~~~~~~~l~~ll-~k~~Vd~vf~~~~~~~~~ 228 (234)
....... + .........+..++ +..+|+++||+|.|-+.+
T Consensus 127 ~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~ 178 (199)
T cd07383 127 EYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDF 178 (199)
T ss_pred HHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcce
Confidence 6532111 1 11112333444455 445899999999987543
No 17
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=128.96 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=111.7
Q ss_pred EEEEEeCCCCC--ChhHHHHHHHHHHHHHhCCCceEEEcCCCCCC--chhhHhhhhccC--CCCCCeEEecccCCCcccC
Q 026711 51 YFISVTGGFRP--LEQQTLLLKQMEDVAKSYDARFVINTSELGED--DPLKQNATWLFP--SLKVPWYTTKASKEKEVGC 124 (234)
Q Consensus 51 ~F~~~gdG~~~--~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~--d~~~~~~~~~~~--~l~~P~~~v~GNHD~~~g~ 124 (234)
+++.+.|-+.+ .....+++.++.+..+..+||+||.+||+++. ....+...+.+. .+..|++++|||||.....
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~~ 81 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARVVN 81 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCchH
Confidence 67788883332 22334455555555567899999999999754 223333333455 7789999999999943322
Q ss_pred ---ceEEEeCC-------CC-CceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCC---eEEEEeecccccc
Q 026711 125 ---FQEQIRLP-------HG-EALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQ---WCIVVGFHPLVIC 190 (234)
Q Consensus 125 ---~~~~~~~P-------~~-~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~---~~IV~~HhP~~~~ 190 (234)
+...+..+ .. +.++++++||...- ...+....+|+.||++.|+..... .++++.|||+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~ 156 (301)
T COG1409 82 GEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPG-----VPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSP 156 (301)
T ss_pred HHHhhhhhcccCcceEeeccCCceEEEEecCCCCC-----CCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCC
Confidence 11111100 12 56899999998432 234678899999999999988765 5555556666554
Q ss_pred CcccchHHHHHhHHHHHHHHHHhC--ccEEEEecCcCC
Q 026711 191 EEHEEQLEAKKIYEPLHHIFMKFG--VVRSFFIFSIPG 226 (234)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~ll~k~~--Vd~vf~~~~~~~ 226 (234)
.. ..+.........+..++.+++ |++++++|.|-.
T Consensus 157 ~~-~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 157 GT-GVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred CC-ccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 33 233333445667888999998 999999998865
No 18
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.63 E-value=1.5e-15 Score=117.84 Aligned_cols=174 Identities=14% Similarity=0.113 Sum_probs=95.7
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchh---hHhhh---hccCCCCCCeEEecccCCCccc
Q 026711 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPL---KQNAT---WLFPSLKVPWYTTKASKEKEVG 123 (234)
Q Consensus 50 ~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~---~~~~~---~~~~~l~~P~~~v~GNHD~~~g 123 (234)
+||+++||-+.+..........+.+.....++|+||++||+...... +.... .......+|+++++||||.+..
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 58999999333211110023444555667899999999999533222 11111 1245668999999999994321
Q ss_pred C----------ceEEEe----CCCCCceEEEEEeCC-CCcCCCCC--CCCCCcHHHHHHHHHHHHHhccCCeEEEEeecc
Q 026711 124 C----------FQEQIR----LPHGEALDIIGVNTG-SLQGKIPT--ALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (234)
Q Consensus 124 ~----------~~~~~~----~P~~~~~~~i~lDT~-~~~~~~~~--~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP 186 (234)
. +..... ....... ....... ........ ........+++.|+...++....+++||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p 159 (200)
T PF00149_consen 81 NSFYGFYDYQFEDYYGNYNYYYSYFNNK-VIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHP 159 (200)
T ss_dssp HHHHHHHHHHHSSEEECSSEEECTESSE-EEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSS
T ss_pred ccccccccccccccccccccccccCcce-eeecccccccccccccccccccccchhcccccccccccccccceeEEEecC
Confidence 1 000000 0010111 1111111 11000000 001223344555656666666678999999999
Q ss_pred ccccCcccchH-HHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 187 LVICEEHEEQL-EAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 187 ~~~~~~~~~~~-~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
+++........ ......+.+..++.+++|+++|++|.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H 198 (200)
T PF00149_consen 160 PYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTH 198 (200)
T ss_dssp SSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSS
T ss_pred CCCccccccccchhhccHHHHHHHHhhCCCCEEEeCcee
Confidence 99876543210 012356778889999999999999987
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.61 E-value=9.5e-15 Score=117.94 Aligned_cols=145 Identities=10% Similarity=-0.014 Sum_probs=91.3
Q ss_pred HHhCCCceEEEcCCCCCCch--hhHhhhhccCCCCCCeEEecccCCCcccCceE---E-EeCC----CCCceEEEEEeCC
Q 026711 76 AKSYDARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASKEKEVGCFQE---Q-IRLP----HGEALDIIGVNTG 145 (234)
Q Consensus 76 ~~~~~~dfvl~~GD~~~~d~--~~~~~~~~~~~l~~P~~~v~GNHD~~~g~~~~---~-~~~P----~~~~~~~i~lDT~ 145 (234)
.++.++|+||++||++.... .... .+.+..+++|++.++|||| ....... . ..+. .-++++|+++|+.
T Consensus 19 ~~~~~~D~vv~~GDl~~~~~~~~~~~-~~~l~~~~~p~~~v~GNHD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 96 (188)
T cd07392 19 LKAEEADAVIVAGDITNFGGKEAAVE-INLLLAIGVPVLAVPGNCD-TPEILGLLTSAGLNLHGKVVEVGGYTFVGIGGS 96 (188)
T ss_pred hhccCCCEEEECCCccCcCCHHHHHH-HHHHHhcCCCEEEEcCCCC-CHHHHHhhhcCcEecCCCEEEECCEEEEEeCCC
Confidence 44578999999999963221 1111 1346677899999999999 4322110 0 1111 1245899999875
Q ss_pred CCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcC
Q 026711 146 SLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIP 225 (234)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~ 225 (234)
..... ...+...++|++|+ +.|+....+.+|+++|||++...............+.+..++++++++++||+|-|-
T Consensus 97 ~~~~~---~~~~~~~~~~l~~~-~~l~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~ 172 (188)
T cd07392 97 NPTPF---NTPIELSEEEIVSD-GRLNNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHE 172 (188)
T ss_pred CCCCC---CCccccCHHHHHHh-hhhhccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccc
Confidence 32111 11234567899998 666666678999999999976311110000001356788899999999999998875
Q ss_pred C
Q 026711 226 G 226 (234)
Q Consensus 226 ~ 226 (234)
.
T Consensus 173 ~ 173 (188)
T cd07392 173 S 173 (188)
T ss_pred c
Confidence 4
No 20
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.60 E-value=1e-14 Score=124.63 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=96.1
Q ss_pred HHHHHHHHhCCCceEEEcCCCCC-----CchhhHhhhh----ccCCC--CCCeEEecccCCCcccC---------ceEEE
Q 026711 70 KQMEDVAKSYDARFVINTSELGE-----DDPLKQNATW----LFPSL--KVPWYTTKASKEKEVGC---------FQEQI 129 (234)
Q Consensus 70 ~~i~~~~~~~~~dfvl~~GD~~~-----~d~~~~~~~~----~~~~l--~~P~~~v~GNHD~~~g~---------~~~~~ 129 (234)
+....+.+..+||+||++||+.. .+.+|.+.++ .+... ..|++.+|||||...++ |.+.|
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~F 114 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYF 114 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHh
Confidence 33344455679999999999832 2345654332 24443 48999999999932211 22223
Q ss_pred eCC----CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhcc-CCeEEEEeeccccccCcccch----HH--
Q 026711 130 RLP----HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATN-GQWCIVVGFHPLVICEEHEEQ----LE-- 198 (234)
Q Consensus 130 ~~P----~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~-~~~~IV~~HhP~~~~~~~~~~----~~-- 198 (234)
..+ ..++++||+|||..+.... .+....+|++||++.|+..+ .+++||++|||+|........ ..
T Consensus 115 g~~~~~~~~~~~~fV~Lds~~l~~~~----~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~ 190 (257)
T cd08163 115 GPTSRVIDVGNHTFVILDTISLSNKD----DPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTP 190 (257)
T ss_pred CCCceEEEECCEEEEEEccccccCCc----ccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCC
Confidence 211 1367999999997543211 23456789999999998764 468999999999975321100 00
Q ss_pred --------HH--HhHHHHHHHHHHhCccEEEEecCcC
Q 026711 199 --------AK--KIYEPLHHIFMKFGVVRSFFIFSIP 225 (234)
Q Consensus 199 --------~~--~~~~~l~~ll~k~~Vd~vf~~~~~~ 225 (234)
.+ -..+.-..||++.+..++|.++.|-
T Consensus 191 ~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~ 227 (257)
T cd08163 191 LPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHD 227 (257)
T ss_pred CCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCc
Confidence 00 0123344788999999999987763
No 21
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.59 E-value=2.6e-14 Score=120.34 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhC--CCceEEEcCCCCCCch--hhHhhhhccCCCCCCeEEecccCCCcccC---ce----EE-EeCC-
Q 026711 66 TLLLKQMEDVAKSY--DARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASKEKEVGC---FQ----EQ-IRLP- 132 (234)
Q Consensus 66 ~~~~~~i~~~~~~~--~~dfvl~~GD~~~~d~--~~~~~~~~~~~l~~P~~~v~GNHD~~~g~---~~----~~-~~~P- 132 (234)
.+.++.+.+..+.. +||+||++||++.... ......+.+..+..|+|.||||||.+... +. +. +.+.
T Consensus 25 ~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GNHD~~~~~~~~~~~~l~~~~~~~~~ 104 (232)
T cd07393 25 KNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGNHDYWWGSASKLRKALEESRLALLF 104 (232)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCCccccCCCHHHHHHHHHhcCeEEec
Confidence 34555555554444 8999999999963211 22222223455667899999999942111 10 00 0000
Q ss_pred C----CCceEEEEEeCCCCcC-CC-------CCCCCCCcHHHHHHHHHHHHHhccC----CeEEEEeeccccccCcccch
Q 026711 133 H----GEALDIIGVNTGSLQG-KI-------PTALPSASGDLLLNWLKSALEATNG----QWCIVVGFHPLVICEEHEEQ 196 (234)
Q Consensus 133 ~----~~~~~~i~lDT~~~~~-~~-------~~~~~~~~~~~ql~wL~~~L~~~~~----~~~IV~~HhP~~~~~~~~~~ 196 (234)
+ -+++.+++++...+.. .+ .....+....+|++||++.|+++.. +++|+++|||++.... +
T Consensus 105 n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~---~ 181 (232)
T cd07393 105 NNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG---D 181 (232)
T ss_pred cCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC---C
Confidence 0 1468888886422111 00 0011134457899999999998643 3699999999987542 1
Q ss_pred HHHHHhHHHHHHHHHHhCccEEEEecCcCCe
Q 026711 197 LEAKKIYEPLHHIFMKFGVVRSFFIFSIPGK 227 (234)
Q Consensus 197 ~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~ 227 (234)
.+.+..++++++|++++|+|.|-..
T Consensus 182 ------~~~~~~~~~~~~v~~vl~GH~H~~~ 206 (232)
T cd07393 182 ------DSPISKLIEEYGVDICVYGHLHGVG 206 (232)
T ss_pred ------HHHHHHHHHHcCCCEEEECCCCCCc
Confidence 2346778899999999999988543
No 22
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.54 E-value=8.9e-14 Score=125.24 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCcCC--CCCCCCCCcHHHHHHHHHHHHHhcc-CCeE-EEEeeccccccCcccchHH---------HHHhH
Q 026711 137 LDIIGVNTGSLQGK--IPTALPSASGDLLLNWLKSALEATN-GQWC-IVVGFHPLVICEEHEEQLE---------AKKIY 203 (234)
Q Consensus 137 ~~~i~lDT~~~~~~--~~~~~~~~~~~~ql~wL~~~L~~~~-~~~~-IV~~HhP~~~~~~~~~~~~---------~~~~~ 203 (234)
+++|+|||..+..+ ..+...+...++|++||+++|+.++ ++.+ ||++|+|+.+.+...++.- ..+.+
T Consensus 305 lrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~~~~L~n~ 384 (492)
T TIGR03768 305 LKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQADGQLMIIAAHIPIAVSPIGSEMEWWLGAADANPDLQNA 384 (492)
T ss_pred eEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcCCCceEEEEeCCCcccCCccchhhhcccccccccccccc
Confidence 39999999864421 1122236678999999999999987 4454 4455555554232111110 01122
Q ss_pred ---HHHHHHHHHh-CccEEEEecCcCCeeecc
Q 026711 204 ---EPLHHIFMKF-GVVRSFFIFSIPGKIVPF 231 (234)
Q Consensus 204 ---~~l~~ll~k~-~Vd~vf~~~~~~~~~~~~ 231 (234)
.+|..+|++| +|-++||+|-|-+++-||
T Consensus 385 ~~~~eLlaLL~~hPnVla~LsGHvHrn~v~a~ 416 (492)
T TIGR03768 385 VSLTGLVTTLQKYPNLLMWIAGHRHLNTVKAF 416 (492)
T ss_pred ccHHHHHHHHhcCCCeEEEEcCCccccccccc
Confidence 3799999999 799999999998888876
No 23
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.42 E-value=7.4e-13 Score=102.97 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCceEEEcCCCCCCc--hhhHhhhhccCCCC---CCeEEecccCCCcccCceEEEeCCCCCceEEEEEeCC
Q 026711 71 QMEDVAKSYDARFVINTSELGEDD--PLKQNATWLFPSLK---VPWYTTKASKEKEVGCFQEQIRLPHGEALDIIGVNTG 145 (234)
Q Consensus 71 ~i~~~~~~~~~dfvl~~GD~~~~d--~~~~~~~~~~~~l~---~P~~~v~GNHD~~~g~~~~~~~~P~~~~~~~i~lDT~ 145 (234)
.+.+..++.++|+|+++||+.... ..|....+.+..+. +|++.++|||| .
T Consensus 26 ~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD-~------------------------ 80 (144)
T cd07400 26 RLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD-V------------------------ 80 (144)
T ss_pred HHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe-E------------------------
Confidence 344556668999999999985322 23444333333332 59999999999 2
Q ss_pred CCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcC
Q 026711 146 SLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIP 225 (234)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~ 225 (234)
||++|||++..+....... ...+.+.+++++++|++++|+|.|-
T Consensus 81 ----------------------------------iv~~Hhp~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~l~GH~H~ 124 (144)
T cd07400 81 ----------------------------------IVVLHHPLVPPPGSGRERL--LDAGDALKLLAEAGVDLVLHGHKHV 124 (144)
T ss_pred ----------------------------------EEEecCCCCCCCccccccC--CCHHHHHHHHHHcCCCEEEECCCCC
Confidence 9999999998755332221 1567899999999999999999886
Q ss_pred Cee
Q 026711 226 GKI 228 (234)
Q Consensus 226 ~~~ 228 (234)
...
T Consensus 125 ~~~ 127 (144)
T cd07400 125 PYV 127 (144)
T ss_pred cCe
Confidence 543
No 24
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.34 E-value=1.9e-12 Score=103.21 Aligned_cols=123 Identities=14% Similarity=-0.006 Sum_probs=76.3
Q ss_pred HHhCCCceEEEcCCCCCCc--hhhHhhhhccCCCCCCeEEecccCCCcccCceEEEeCCCCCceEEEEEeCCCCcCCCCC
Q 026711 76 AKSYDARFVINTSELGEDD--PLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPT 153 (234)
Q Consensus 76 ~~~~~~dfvl~~GD~~~~d--~~~~~~~~~~~~l~~P~~~v~GNHD~~~g~~~~~~~~P~~~~~~~i~lDT~~~~~~~~~ 153 (234)
....++|+|+++||+.... ..+.. .........|++.++||||.+ ++|++. |.|. . +.
T Consensus 22 ~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~~~~~~~v~~v~GNHD~~---------------~~~~G~-~~w~-~-~~- 81 (166)
T cd07404 22 PIAPDADILVLAGDIGYLTDAPRFAP-LLLALKGFEPVIYVPGNHEFY---------------VRIIGT-TLWS-D-IS- 81 (166)
T ss_pred CCCCCCCEEEECCCCCCCcchHHHHH-HHHhhcCCccEEEeCCCcceE---------------EEEEee-eccc-c-cC-
Confidence 3457899999999986422 22221 112334578999999999932 555555 3221 1 11
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchH-HH--HHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 154 ALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQL-EA--KKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 154 ~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~-~~--~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
....+..+|..++++ +++||++|||++..+....+. .. ......+..++++++|++++|+|.|-.
T Consensus 82 ----~~~~~~~~~~~~d~~----~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~ 149 (166)
T cd07404 82 ----LFGEAAARMRMNDFR----GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFN 149 (166)
T ss_pred ----ccchHHHHhCCCCCC----CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCcccc
Confidence 112345566555554 689999999998865422111 10 123445777888899999999998855
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.33 E-value=6.1e-11 Score=99.23 Aligned_cols=158 Identities=9% Similarity=0.039 Sum_probs=96.1
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc--h-hhHhhhhccCCCCCCeEEecccCCCcc---
Q 026711 49 DFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD--P-LKQNATWLFPSLKVPWYTTKASKEKEV--- 122 (234)
Q Consensus 49 ~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d--~-~~~~~~~~~~~l~~P~~~v~GNHD~~~--- 122 (234)
.-++++++|-+. . ...++++.+..++.++|+||++||+.... + ......+.+..+..|++.+||||| ..
T Consensus 4 ~~kIl~iSDiHg---n-~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD-~~v~~ 78 (224)
T cd07388 4 VRYVLATSNPKG---D-LEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQD-APLWE 78 (224)
T ss_pred eeEEEEEEecCC---C-HHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCC-hHHHH
Confidence 347899999543 1 22344444455567899999999996432 1 122223335677899999999999 32
Q ss_pred ---cCceEE------EeCC-----CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHH----HHHHH----HHHhccCCeEE
Q 026711 123 ---GCFQEQ------IRLP-----HGEALDIIGVNTGSLQGKIPTALPSASGDLLL----NWLKS----ALEATNGQWCI 180 (234)
Q Consensus 123 ---g~~~~~------~~~P-----~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql----~wL~~----~L~~~~~~~~I 180 (234)
..|... ..+. ..+.++|++++...-.. .+..+++. .|+.+ .+.....+..|
T Consensus 79 ~l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~-------~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~V 151 (224)
T cd07388 79 YLREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADE-------GEPEEHEALRYPAWVAEYRLKALWELKDYRKV 151 (224)
T ss_pred HHHHHhcccccCccceecCCCeEEecCCeEEEEecCCcCCC-------CCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeE
Confidence 112111 1111 12558999998543111 12233432 55433 45444456889
Q ss_pred EEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 181 VVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 181 V~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
+++|+||+-.+..+. -...+..++++++=.+++|+|=|
T Consensus 152 Lv~H~PP~g~g~~h~------GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 152 FLFHTPPYHKGLNEQ------GSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred EEECCCCCCCCCCcc------CHHHHHHHHHHhCCCEEEEcCCc
Confidence 999999998742111 24557779999999999998544
No 26
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.23 E-value=1.2e-10 Score=96.37 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCCC---ch-hhHhhhhccCCC---CCCeEEecccCCCcccC--ceEE-----Ee-
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGED---DP-LKQNATWLFPSL---KVPWYTTKASKEKEVGC--FQEQ-----IR- 130 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~~---d~-~~~~~~~~~~~l---~~P~~~v~GNHD~~~g~--~~~~-----~~- 130 (234)
....+.+.+.+++.+||+||++||+-.. .. .+....+.+..+ ++|+++++||||...+. +... +.
T Consensus 27 ~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~~~~~~~~~~~~~ 106 (223)
T cd00840 27 FEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGALSPLLALSGLHL 106 (223)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCCCccccccccchHhhCcEEE
Confidence 3445555556667899999999998321 11 222233333333 89999999999933221 0000 00
Q ss_pred ------------CC-CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhc-cCCeEEEEeeccccccCcccch
Q 026711 131 ------------LP-HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEAT-NGQWCIVVGFHPLVICEEHEEQ 196 (234)
Q Consensus 131 ------------~P-~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~-~~~~~IV~~HhP~~~~~~~~~~ 196 (234)
.. ...++.+++++... ......++++++..+... +.++.|+++|+|+.........
T Consensus 107 ~~~~~~~~~~~~~~~~~~~v~i~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~~ 176 (223)
T cd00840 107 VGVEEDVLTPLLLPKGGTGVAIYGLPYLR----------RSRLRDLLADAELRPRPLDPDDFNILLLHGGVAGAGPSDSE 176 (223)
T ss_pred EcccCcceeEEEeccCCeEEEEEECCCCC----------HHHHHHHHHHHHHHhhccCCCCcEEEEEeeeeecCCCCccc
Confidence 00 23446666664321 111233445545555443 4568999999998765422111
Q ss_pred HHHHHhHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 197 LEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 197 ~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
. .......+...++|+++++|-|-..+
T Consensus 177 ~-----~~~~~~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 177 R-----APFVPEALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred c-----cccCcHhhcCcCCCEEECCCcccCee
Confidence 0 12222345678999999999987665
No 27
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.17 E-value=8.5e-10 Score=95.04 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=84.5
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCC--CchhhHhhhhccCCC--CCCeEEecccCCCcc
Q 026711 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE--DDPLKQNATWLFPSL--KVPWYTTKASKEKEV 122 (234)
Q Consensus 47 ~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~--~d~~~~~~~~~~~~l--~~P~~~v~GNHD~~~ 122 (234)
...++++.++|=+.+........+.+.+..++.+||+|+++||+.+ ....+....+.++.+ ..|+|.|+||||.+.
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPV 126 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCccc
Confidence 3469999999943332222233344444556689999999999853 112222222222332 379999999999432
Q ss_pred cC-----ce---EE--E--------eCC-CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEe
Q 026711 123 GC-----FQ---EQ--I--------RLP-HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVG 183 (234)
Q Consensus 123 g~-----~~---~~--~--------~~P-~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~ 183 (234)
+. +. ++ + ... .+..+.++++|-.+ .+ .... .+.++ ++...|+..
T Consensus 127 ~~~~~~~~~~~l~~~gi~lL~n~~~~i~~~~~~i~i~G~~d~~-----~~---~~~~-------~~~~~--~~~~~IlL~ 189 (271)
T PRK11340 127 GTEKNHLIGETLKSAGITVLFNQATVIATPNRQFELVGTGDLW-----AG---QCKP-------PPASE--ANLPRLVLA 189 (271)
T ss_pred CccchHHHHHHHHhcCcEEeeCCeEEEeeCCcEEEEEEecchh-----cc---CCCh-------hHhcC--CCCCeEEEE
Confidence 21 00 00 0 000 23446666775321 10 0011 11121 255899999
Q ss_pred eccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCee-eccc
Q 026711 184 FHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKI-VPFL 232 (234)
Q Consensus 184 HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~-~~~~ 232 (234)
|+|-+.. .+.++++|++||+|.|=+-| +||+
T Consensus 190 H~P~~~~------------------~~~~~~~dL~lsGHTHGGQi~lP~~ 221 (271)
T PRK11340 190 HNPDSKE------------------VMRDEPWDLMLCGHTHGGQLRVPLV 221 (271)
T ss_pred cCCChhH------------------hhccCCCCEEEeccccCCeEEcccc
Confidence 9997531 12457899999999997665 4764
No 28
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.16 E-value=7.4e-10 Score=96.01 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=107.9
Q ss_pred CCCccEEEEEEeCCCCCCh----------hH------HHHHHHHHHHHHhCCCceEEEcCCC--C--CCch--hhHhhhh
Q 026711 45 RKGLDFYFISVTGGFRPLE----------QQ------TLLLKQMEDVAKSYDARFVINTSEL--G--EDDP--LKQNATW 102 (234)
Q Consensus 45 ~~~~~~~F~~~gdG~~~~~----------~q------~~~~~~i~~~~~~~~~dfvl~~GD~--~--~~d~--~~~~~~~ 102 (234)
.....++.+.++|=+.+.. .+ ..-...|.++....+||||++|||+ | ..|. .|+.+..
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAva 128 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVA 128 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhh
Confidence 4457788899988221111 11 1234456667777899999999998 3 1122 2444444
Q ss_pred ccCCCCCCeEEecccCCCcc----------------------------------cCceEEEe-CC-----CCCceEEEEE
Q 026711 103 LFPSLKVPWYTTKASKEKEV----------------------------------GCFQEQIR-LP-----HGEALDIIGV 142 (234)
Q Consensus 103 ~~~~l~~P~~~v~GNHD~~~----------------------------------g~~~~~~~-~P-----~~~~~~~i~l 142 (234)
-+...+|||.++.||||... |+|..+.. ++ ...-..+++|
T Consensus 129 P~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfl 208 (379)
T KOG1432|consen 129 PAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFL 208 (379)
T ss_pred hHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEE
Confidence 45667999999999999211 11211211 11 1124567888
Q ss_pred eCCCCcCCC-CCCCCCCcHHHHHHHHHHHHHh----cc--CC-eEEEEeeccccccCcc-------cchHH---HHHhHH
Q 026711 143 NTGSLQGKI-PTALPSASGDLLLNWLKSALEA----TN--GQ-WCIVVGFHPLVICEEH-------EEQLE---AKKIYE 204 (234)
Q Consensus 143 DT~~~~~~~-~~~~~~~~~~~ql~wL~~~L~~----~~--~~-~~IV~~HhP~~~~~~~-------~~~~~---~~~~~~ 204 (234)
|+..+...- ....|....+.|++||+..-.. .. ++ +-+++.|-|+-..-.- +...+ ......
T Consensus 209 d~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~s 288 (379)
T KOG1432|consen 209 DSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNS 288 (379)
T ss_pred ecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeecccccccccc
Confidence 988654321 1112456778999999988732 11 12 5788999998433211 00001 011233
Q ss_pred HHHHHHH-HhCccEEEEecCcCCee
Q 026711 205 PLHHIFM-KFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 205 ~l~~ll~-k~~Vd~vf~~~~~~~~~ 228 (234)
.+...|. +-+|++|||+|-|=|-+
T Consensus 289 g~~~~L~~r~~Vk~vf~GHdHvNDf 313 (379)
T KOG1432|consen 289 GFLTTLVNRGNVKGVFCGHDHVNDF 313 (379)
T ss_pred HHHHHHHhccCcceEEeccccccce
Confidence 4666677 77899999999886543
No 29
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.08 E-value=1.8e-09 Score=89.76 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=82.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhh-HhhhhccCC--CCCCeEEecccCCCcccCce
Q 026711 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLK-QNATWLFPS--LKVPWYTTKASKEKEVGCFQ 126 (234)
Q Consensus 50 ~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~-~~~~~~~~~--l~~P~~~v~GNHD~~~g~~~ 126 (234)
+++++++|-+.+........+.+.+..++.+||+|+++||+....... ....+.+.. ...|++.++||||.+.+...
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~ 81 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEE 81 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchH
Confidence 589999993322221112223333444557899999999985322211 122222333 35899999999994433211
Q ss_pred E---E-----Ee-CC--------CCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhcc-CCeEEEEeecccc
Q 026711 127 E---Q-----IR-LP--------HGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATN-GQWCIVVGFHPLV 188 (234)
Q Consensus 127 ~---~-----~~-~P--------~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~-~~~~IV~~HhP~~ 188 (234)
. . +. +. .+..+.+++++.. ....+++.+.++..+ .+..|++.|.|.+
T Consensus 82 ~~~~~l~~~~v~~L~~~~~~~~~~~~~i~i~G~~~~---------------~~~~~~~~~~~~~~~~~~~~I~l~H~P~~ 146 (223)
T cd07385 82 NWIEALESAGITVLRNESVEISVGGATIGIAGVDDG---------------LGRRPDLEKALKGLDEDDPNILLAHQPDT 146 (223)
T ss_pred HHHHHHHHcCCEEeecCcEEeccCCeEEEEEeccCc---------------cccCCCHHHHHhCCCCCCCEEEEecCCCh
Confidence 0 0 00 00 1122333332211 112345566666543 4689999998754
Q ss_pred ccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeeecc
Q 026711 189 ICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIVPF 231 (234)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~~~ 231 (234)
.. .+.+.++|+++++|.|-+.+-++
T Consensus 147 ~~------------------~~~~~~~dl~l~GHtHggqi~~~ 171 (223)
T cd07385 147 AE------------------EAAAWGVDLQLSGHTHGGQIRLP 171 (223)
T ss_pred hH------------------HhcccCccEEEeccCCCCEEecc
Confidence 21 11567999999999998766543
No 30
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.89 E-value=1.6e-08 Score=75.51 Aligned_cols=94 Identities=20% Similarity=0.154 Sum_probs=65.6
Q ss_pred HHHhCCCceEEEcCCCCCCc--hhhHhh--hhccCCCCCCeEEecccCCCcccCceEEEeCCCCCceEEEEEeCCCCcCC
Q 026711 75 VAKSYDARFVINTSELGEDD--PLKQNA--TWLFPSLKVPWYTTKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGK 150 (234)
Q Consensus 75 ~~~~~~~dfvl~~GD~~~~d--~~~~~~--~~~~~~l~~P~~~v~GNHD~~~g~~~~~~~~P~~~~~~~i~lDT~~~~~~ 150 (234)
..++.++++||++||+.... ..+... ........+|++.++||||
T Consensus 21 ~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD------------------------------- 69 (131)
T cd00838 21 LAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD------------------------------- 69 (131)
T ss_pred HhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-------------------------------
Confidence 34568999999999984221 111111 1225677999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeee
Q 026711 151 IPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIV 229 (234)
Q Consensus 151 ~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~ 229 (234)
|+++|+|++.......... ......+..++.+++++++|++|+|.....
T Consensus 70 -----------------------------i~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~ 118 (131)
T cd00838 70 -----------------------------ILLTHGPPYDPLDELSPDE-DPGSEALLELLEKYGVDLVLSGHTHVYERR 118 (131)
T ss_pred -----------------------------EEEeccCCCCCchhhcccc-hhhHHHHHHHHHHhCCCEEEeCCeeccccc
Confidence 8899999988654332211 113566778889999999999999876643
No 31
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.88 E-value=3.8e-08 Score=91.05 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhCC-CceEEEcCCCCCCchhhHhhh-----------hccC-CC-CCCeEEecccCCCcc------cC---
Q 026711 68 LLKQMEDVAKSYD-ARFVINTSELGEDDPLKQNAT-----------WLFP-SL-KVPWYTTKASKEKEV------GC--- 124 (234)
Q Consensus 68 ~~~~i~~~~~~~~-~dfvl~~GD~~~~d~~~~~~~-----------~~~~-~l-~~P~~~v~GNHD~~~------g~--- 124 (234)
+..+|..+.+..+ +|+|+++||+...+ .|.... +.+. .+ ++|+|+++||||... +.
T Consensus 197 ies~L~~ike~~~~iD~I~wTGD~~~H~-~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~ 275 (577)
T KOG3770|consen 197 IESALDHIKENHKDIDYIIWTGDNVAHD-VWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPK 275 (577)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCccc-chhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcc
Confidence 4445555555555 99999999995333 332211 1111 12 899999999999221 10
Q ss_pred -------ce---EEEe--CC--------C--------CCceEEEEEeCCCCcCC-CCCCCCCCcHHHHHHHHHHHHHhcc
Q 026711 125 -------FQ---EQIR--LP--------H--------GEALDIIGVNTGSLQGK-IPTALPSASGDLLLNWLKSALEATN 175 (234)
Q Consensus 125 -------~~---~~~~--~P--------~--------~~~~~~i~lDT~~~~~~-~~~~~~~~~~~~ql~wL~~~L~~~~ 175 (234)
|. ..|. +| . .+++++|.|||+..... +--.....+...|++|+..+|..++
T Consensus 276 ~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae 355 (577)
T KOG3770|consen 276 RHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAE 355 (577)
T ss_pred hhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHH
Confidence 00 0010 12 1 17799999999843221 1000114456788999999999875
Q ss_pred C--CeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhC--ccEEEEecCcCCeee
Q 026711 176 G--QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFG--VVRSFFIFSIPGKIV 229 (234)
Q Consensus 176 ~--~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~--Vd~vf~~~~~~~~~~ 229 (234)
. ..|-|++|-|+.. +.-.. .....+-.++.+|. +...|.+|.|-.+|.
T Consensus 356 ~~GekVhil~HIPpG~-~~c~~-----~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 356 SAGEKVHILGHIPPGD-GVCLE-----GWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred hcCCEEEEEEeeCCCC-cchhh-----hhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 5 4899999999976 22111 13444556667773 666677777766654
No 32
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.85 E-value=1.3e-08 Score=78.37 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=70.0
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc--hhhHhhhhccCCCCCC-eEEecccCCCcccCceE
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD--PLKQNATWLFPSLKVP-WYTTKASKEKEVGCFQE 127 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d--~~~~~~~~~~~~l~~P-~~~v~GNHD~~~g~~~~ 127 (234)
++++++|-+.... ..+..++|+|+++||+.... ..++...+.+..++.| ++.++||||.+..
T Consensus 1 ~i~~isD~H~~~~-----------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~---- 65 (135)
T cd07379 1 RFVCISDTHSRHR-----------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD---- 65 (135)
T ss_pred CEEEEeCCCCCCC-----------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC----
Confidence 3688999443211 11336899999999985322 2222233335555555 5789999993211
Q ss_pred EEeCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHH
Q 026711 128 QIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLH 207 (234)
Q Consensus 128 ~~~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~ 207 (234)
.+++.|++.|.|++........ ......+.+.
T Consensus 66 -----------------------------------------------~~~~~ilv~H~~p~~~~~~~~~-~~~~g~~~~~ 97 (135)
T cd07379 66 -----------------------------------------------PEDTDILVTHGPPYGHLDLVSS-GQRVGCEELL 97 (135)
T ss_pred -----------------------------------------------CCCCEEEEECCCCCcCcccccc-CcccCCHHHH
Confidence 3456788999999775432111 0001234466
Q ss_pred HHHHHhCccEEEEecCcCCe
Q 026711 208 HIFMKFGVVRSFFIFSIPGK 227 (234)
Q Consensus 208 ~ll~k~~Vd~vf~~~~~~~~ 227 (234)
.+++++++++++|+|.|-..
T Consensus 98 ~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 98 NRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred HHHHHHCCcEEEEcCcCCcC
Confidence 67788999999999998663
No 33
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.76 E-value=3.2e-08 Score=81.78 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=84.2
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCC---CCchhhH--------------------------h
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG---EDDPLKQ--------------------------N 99 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~---~~d~~~~--------------------------~ 99 (234)
+.+.+.| |. .+.++.+.+.+....+|.|+++||+- ....+|. +
T Consensus 7 kilA~s~~~g~------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ 80 (255)
T PF14582_consen 7 KILAISNFRGD------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDK 80 (255)
T ss_dssp EEEEEE--TT-------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHH
T ss_pred hheeecCcchH------HHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHH
Confidence 5566677 42 34555566666667999999999982 1233455 3
Q ss_pred hhhccCCCCCCeEEecccCCCcccCc-----eEEEeCC-----------CCCceEEEEEeCCCCcCCCCCCCCCCcHHHH
Q 026711 100 ATWLFPSLKVPWYTTKASKEKEVGCF-----QEQIRLP-----------HGEALDIIGVNTGSLQGKIPTALPSASGDLL 163 (234)
Q Consensus 100 ~~~~~~~l~~P~~~v~GNHD~~~g~~-----~~~~~~P-----------~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~q 163 (234)
.|+.+..+.+|++.+|||||-+...| ......| ..+...++++-...--........-+.+...
T Consensus 81 ff~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP~we 160 (255)
T PF14582_consen 81 FFRILGELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYPAWE 160 (255)
T ss_dssp HHHHHHCC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEEHHH
T ss_pred HHHHHHhcCCcEEEecCCCCchHHHHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCccccccccchHHH
Confidence 34447788999999999999322111 1000011 1244666665221100000000011223335
Q ss_pred HHHHHHHHHhccCCeEEEEeeccc-cccC-cccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 164 LNWLKSALEATNGQWCIVVGFHPL-VICE-EHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 164 l~wL~~~L~~~~~~~~IV~~HhP~-~~~~-~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
.+|..+.|...+...+|+.+|-|+ +-.+ .+.. .+.+..++++|+=++++|+|.+-.
T Consensus 161 aey~lk~l~elk~~r~IlLfhtpPd~~kg~~h~G-------S~~V~dlIk~~~P~ivl~Ghihe~ 218 (255)
T PF14582_consen 161 AEYSLKFLRELKDYRKILLFHTPPDLHKGLIHVG-------SAAVRDLIKTYNPDIVLCGHIHES 218 (255)
T ss_dssp HHHHHGGGGGCTSSEEEEEESS-BTBCTCTBTTS-------BHHHHHHHHHH--SEEEE-SSS-E
T ss_pred HHHHHHHHHhcccccEEEEEecCCccCCCccccc-------HHHHHHHHHhcCCcEEEecccccc
Confidence 566667777776668888999999 4444 2211 234566899999999999887654
No 34
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.70 E-value=7.9e-08 Score=78.60 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCceEEEcCCCC-----CCchhhHhhhhc----c-CCCCCCeEEecccCCCcccCceEEEeCCCCCce
Q 026711 68 LLKQMEDVAKSYDARFVINTSELG-----EDDPLKQNATWL----F-PSLKVPWYTTKASKEKEVGCFQEQIRLPHGEAL 137 (234)
Q Consensus 68 ~~~~i~~~~~~~~~dfvl~~GD~~-----~~d~~~~~~~~~----~-~~l~~P~~~v~GNHD~~~g~~~~~~~~P~~~~~ 137 (234)
+.+......+..+||+|+++||+. ..+.+|.+..+. + ....+|++.+||||| ..+. + .
T Consensus 30 l~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHD-IG~~----------~-~ 97 (195)
T cd08166 30 LKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDND-IGGE----------E-E 97 (195)
T ss_pred HHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCC-cCCC----------C-C
Confidence 444444455668999999999983 123345544332 1 233789999999999 3111 0 0
Q ss_pred EEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccE
Q 026711 138 DIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVR 217 (234)
Q Consensus 138 ~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~ 217 (234)
+.. .+-++-.++.. |++.|.|+...+.. .+..++.++.+++
T Consensus 98 -----~~~---------------~~~v~RF~~~F--------i~lsH~P~~~~~~~-----------~~~~~~~~~~p~~ 138 (195)
T cd08166 98 -----DPI---------------ESKIRRFEKYF--------IMLSHVPLLAEGGQ-----------ALKHVVTDLDPDL 138 (195)
T ss_pred -----CcC---------------HHHHHHHHHhh--------eeeecccccccccH-----------HHHHHHHhcCceE
Confidence 000 11122222222 88999999884321 3455788899999
Q ss_pred EEEecCcCCeee
Q 026711 218 SFFIFSIPGKIV 229 (234)
Q Consensus 218 vf~~~~~~~~~~ 229 (234)
+|.+|-|+..++
T Consensus 139 Ifs~H~H~s~~~ 150 (195)
T cd08166 139 IFSAHRHKSSIF 150 (195)
T ss_pred EEEcCccceeeE
Confidence 999999987664
No 35
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.69 E-value=3.2e-08 Score=77.22 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=67.4
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCCcccCceEEE
Q 026711 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQI 129 (234)
Q Consensus 50 ~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~~~g~~~~~~ 129 (234)
.+++++||-+.+. ..+.+.++.. .++|+|+++||+... ++..+.++.. |++.++|||| ... |....
T Consensus 1 Mki~~~sD~H~~~---~~~~~~~~~~---~~~d~vi~~GDi~~~----~~~~~~~~~~--~~~~v~GNHD-~~~-~~~~~ 66 (156)
T PF12850_consen 1 MKIAVISDLHGNL---DALEAVLEYI---NEPDFVIILGDIFDP----EEVLELLRDI--PVYVVRGNHD-NWA-FPNEN 66 (156)
T ss_dssp EEEEEEE--TTTH---HHHHHHHHHH---TTESEEEEES-SCSH----HHHHHHHHHH--EEEEE--CCH-STH-HHSEE
T ss_pred CEEEEEeCCCCCh---hHHHHHHHHh---cCCCEEEECCCchhH----HHHHHHHhcC--CEEEEeCCcc-ccc-chhhh
Confidence 3789999965532 2233333333 469999999998642 2333333333 8999999999 321 21111
Q ss_pred eCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHH
Q 026711 130 RLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHI 209 (234)
Q Consensus 130 ~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~l 209 (234)
.. . . +.+.+...-.+..++++|++++.... . .+.+..+
T Consensus 67 ~~---~-~-----------------------------~~~~~~~~~~~~~i~~~H~~~~~~~~--~-------~~~~~~~ 104 (156)
T PF12850_consen 67 DE---E-Y-----------------------------LLDALRLTIDGFKILLSHGHPYDVQW--D-------PAELREI 104 (156)
T ss_dssp CT---C-S-----------------------------SHSEEEEEETTEEEEEESSTSSSSTT--T-------HHHHHHH
T ss_pred hc---c-c-----------------------------cccceeeeecCCeEEEECCCCccccc--C-------hhhhhhh
Confidence 10 0 0 11111111235789999988877431 1 1224457
Q ss_pred HHHhCccEEEEecCcCCee
Q 026711 210 FMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 210 l~k~~Vd~vf~~~~~~~~~ 228 (234)
+...++++++|+|.|-...
T Consensus 105 ~~~~~~~~~~~GH~H~~~~ 123 (156)
T PF12850_consen 105 LSRENVDLVLHGHTHRPQV 123 (156)
T ss_dssp HHHTTSSEEEESSSSSEEE
T ss_pred hcccCCCEEEcCCcccceE
Confidence 7788999999999886554
No 36
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.66 E-value=1.4e-07 Score=74.74 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCceEEEcCCCCCC-----chhhHhhhhc----cCC-CCCCeEEecccCCCcccCceEEEeCCCCCce
Q 026711 68 LLKQMEDVAKSYDARFVINTSELGED-----DPLKQNATWL----FPS-LKVPWYTTKASKEKEVGCFQEQIRLPHGEAL 137 (234)
Q Consensus 68 ~~~~i~~~~~~~~~dfvl~~GD~~~~-----d~~~~~~~~~----~~~-l~~P~~~v~GNHD~~~g~~~~~~~~P~~~~~ 137 (234)
+.+.+++..++.+||+|+++||+..+ +..|...... +.. ..+|++.++|||| ..+. ..
T Consensus 26 ~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD-~~~~----------~~- 93 (156)
T cd08165 26 MERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHD-IGFH----------YE- 93 (156)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCC-cCCC----------Cc-
Confidence 34455566667899999999998421 2234333221 222 3689999999999 3110 00
Q ss_pred EEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccE
Q 026711 138 DIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVR 217 (234)
Q Consensus 138 ~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~ 217 (234)
+ ..+-.+.+++.+ |++.|+|.+. ++.++++++
T Consensus 94 ----~-----------------~~~~~~~~~~~~--------~~l~H~p~~~-------------------~~~~~~~~~ 125 (156)
T cd08165 94 ----M-----------------TTYKLERFEKVF--------ILLQHFPLYR-------------------LLQWLKPRL 125 (156)
T ss_pred ----c-----------------CHHHHHHHHHHe--------eeeeCChHHH-------------------HHHhhCCCE
Confidence 0 012233344443 8888999732 556778899
Q ss_pred EEEecCcCCeee
Q 026711 218 SFFIFSIPGKIV 229 (234)
Q Consensus 218 vf~~~~~~~~~~ 229 (234)
+||+|.||...+
T Consensus 126 ~l~GH~H~~~~~ 137 (156)
T cd08165 126 VLSGHTHSFCEV 137 (156)
T ss_pred EEEcccCCCcee
Confidence 999999997554
No 37
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.61 E-value=1.7e-07 Score=71.94 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=59.4
Q ss_pred hCCCceEEEcCCCCCCchhhHhhhhccCC-CCCCeEEecccCCCcccCceEEEeCCCCCceEEEEEeCCCCcCCCCCCCC
Q 026711 78 SYDARFVINTSELGEDDPLKQNATWLFPS-LKVPWYTTKASKEKEVGCFQEQIRLPHGEALDIIGVNTGSLQGKIPTALP 156 (234)
Q Consensus 78 ~~~~dfvl~~GD~~~~d~~~~~~~~~~~~-l~~P~~~v~GNHD~~~g~~~~~~~~P~~~~~~~i~lDT~~~~~~~~~~~~ 156 (234)
..++|.++++||...+ .. +.+.. ...|++.+.||||
T Consensus 20 ~~~~d~ii~~GD~~~~--~~----~~~~~~~~~~~~~V~GN~D------------------------------------- 56 (129)
T cd07403 20 LEGVDLILSAGDLPKE--YL----EYLVTMLNVPVYYVHGNHD------------------------------------- 56 (129)
T ss_pred CCCCCEEEECCCCChH--HH----HHHHHHcCCCEEEEeCCCc-------------------------------------
Confidence 4789999999998531 11 11111 3668999999999
Q ss_pred CCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeee
Q 026711 157 SASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIV 229 (234)
Q Consensus 157 ~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~ 229 (234)
.+|+++|||++..... .+ ......+.+.++++++++++++|+|.|-....
T Consensus 57 ---------------------~~Ilv~H~pp~~~~~~-~~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 57 ---------------------VDILLTHAPPAGIGDG-ED-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred ---------------------cCEEEECCCCCcCcCc-cc-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 5688999998754321 11 12234566778888999999999999866543
No 38
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.61 E-value=7.8e-08 Score=77.37 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCceEEEcCCCCCC-----chhhHhhhhc----cCC-----CCCCeEEecccCC
Q 026711 67 LLLKQMEDVAKSYDARFVINTSELGED-----DPLKQNATWL----FPS-----LKVPWYTTKASKE 119 (234)
Q Consensus 67 ~~~~~i~~~~~~~~~dfvl~~GD~~~~-----d~~~~~~~~~----~~~-----l~~P~~~v~GNHD 119 (234)
...+.+.+..+..+||+|+++||+-.. ...|.+..+. +.. ..+|++.++||||
T Consensus 32 ~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD 98 (171)
T cd07384 32 YMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHD 98 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccc
Confidence 355666666677899999999998321 1245443322 221 2689999999999
No 39
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.55 E-value=2.8e-06 Score=71.67 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=40.1
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCC
Q 026711 50 FYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 50 ~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
++++++||-+..... . . .+..+..+||+|+++||++.+.. +..+.+..+..|++.++||||.
T Consensus 1 ~rIa~isDiHg~~~~-~----~-~~~l~~~~pD~Vl~~GDi~~~~~---~~~~~l~~l~~p~~~V~GNHD~ 62 (238)
T cd07397 1 LRIAIVGDVHGQWDL-E----D-IKALHLLQPDLVLFVGDFGNESV---QLVRAISSLPLPKAVILGNHDA 62 (238)
T ss_pred CEEEEEecCCCCchH-H----H-HHHHhccCCCEEEECCCCCcChH---HHHHHHHhCCCCeEEEcCCCcc
Confidence 478899994321111 1 1 12344578999999999975432 2222345667899999999993
No 40
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.53 E-value=4.8e-07 Score=73.90 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=26.4
Q ss_pred EEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeeecc
Q 026711 180 IVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIVPF 231 (234)
Q Consensus 180 IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~~~ 231 (234)
|++.|+|.+. ...+.+++++||+|-||+.++-+
T Consensus 129 ilL~H~P~~~-------------------~~~~~~~dl~lSGHtHgGqi~~~ 161 (193)
T cd08164 129 ILLTHVPLYK-------------------IFLEGKPGLILTGHDHEGCDYQH 161 (193)
T ss_pred EEEEccccee-------------------ccccCCCCEEEeCccCCCeEEEe
Confidence 8899999876 22346899999999999988653
No 41
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.36 E-value=1.7e-05 Score=68.08 Aligned_cols=169 Identities=8% Similarity=-0.085 Sum_probs=87.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH--HhCCCceEEEcCCCCC----Cch----------hhHhhhhc---cCCCCCCeEE
Q 026711 53 ISVTGGFRPLEQQTLLLKQMEDVA--KSYDARFVINTSELGE----DDP----------LKQNATWL---FPSLKVPWYT 113 (234)
Q Consensus 53 ~~~gdG~~~~~~q~~~~~~i~~~~--~~~~~dfvl~~GD~~~----~d~----------~~~~~~~~---~~~l~~P~~~ 113 (234)
+|+||-+. +-..+.+.+.... +..++|+||..||.+. ++. .+...... ....++|+++
T Consensus 2 ~v~Gd~HG---~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 2 AVEGCCHG---ELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred EEEecCCc---cHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 68899332 1123444343332 2357999999999842 111 11111112 3446788899
Q ss_pred ecccCCCcccCceE----EE------eCCC-----CCceEEEEEeCCCCcCCCCCCC--CCCcHHHHHHHHH-------H
Q 026711 114 TKASKEKEVGCFQE----QI------RLPH-----GEALDIIGVNTGSLQGKIPTAL--PSASGDLLLNWLK-------S 169 (234)
Q Consensus 114 v~GNHD~~~g~~~~----~~------~~P~-----~~~~~~i~lDT~~~~~~~~~~~--~~~~~~~ql~wL~-------~ 169 (234)
|.|||| ....+.+ .| .+.. -.+++|.++-...-...+.... .....+.++..+- +
T Consensus 79 i~GNHE-~~~~l~~l~~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~ 157 (262)
T cd00844 79 IGGNHE-ASNYLWELPYGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVF 157 (262)
T ss_pred ECCCCC-CHHHHHhhcCCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhhhHHHHH
Confidence 999999 3221110 01 1111 1557888773322111121110 0111233333211 1
Q ss_pred HHHhccCCeEEEEeeccccccCcccchHHH--------------HHhHHHHHHHHHHhCccEEEEecCcC
Q 026711 170 ALEATNGQWCIVVGFHPLVICEEHEEQLEA--------------KKIYEPLHHIFMKFGVVRSFFIFSIP 225 (234)
Q Consensus 170 ~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~--------------~~~~~~l~~ll~k~~Vd~vf~~~~~~ 225 (234)
.|......--|++.|.|+.....+++.... ..-...+..++++.+=...||+|.|-
T Consensus 158 kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~ 227 (262)
T cd00844 158 KLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHV 227 (262)
T ss_pred HHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCc
Confidence 122223345699999999887554432211 11234577899999999999998775
No 42
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.36 E-value=7.5e-06 Score=65.48 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCC--CCchhhHhhhhccCCCCCCeEEecccCC-CcccC-ceEEEeCC-------CC---CceEEEEEeC
Q 026711 79 YDARFVINTSELG--EDDPLKQNATWLFPSLKVPWYTTKASKE-KEVGC-FQEQIRLP-------HG---EALDIIGVNT 144 (234)
Q Consensus 79 ~~~dfvl~~GD~~--~~d~~~~~~~~~~~~l~~P~~~v~GNHD-~~~g~-~~~~~~~P-------~~---~~~~~i~lDT 144 (234)
..-|.|+..||++ -+-++-++.++....+...-|.+-|||| |+... -.. -.+| ++ .+..+++.-
T Consensus 42 ~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~rGNHDYWw~s~skl~-n~lp~~l~~~n~~f~l~n~aI~G~R- 119 (230)
T COG1768 42 SPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIRGNHDYWWSSISKLN-NALPPILFYLNNGFELLNYAIVGVR- 119 (230)
T ss_pred ChhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEecCCccccchHHHHH-hhcCchHhhhccceeEeeEEEEEee-
Confidence 3448999999985 1111112233335667777899999999 22210 000 0011 11 334444441
Q ss_pred CCCcCCCCCCCC----CCcHHHHHHHHHH-HHHhccC--CeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccE
Q 026711 145 GSLQGKIPTALP----SASGDLLLNWLKS-ALEATNG--QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVR 217 (234)
Q Consensus 145 ~~~~~~~~~~~~----~~~~~~ql~wL~~-~L~~~~~--~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~ 217 (234)
.|.....+..+. .+.-.+.+.-|+. ..++-++ ...||+.|.|+++....+ ..+..++++++|+.
T Consensus 120 gW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t~---------~~~sevlee~rv~~ 190 (230)
T COG1768 120 GWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGTP---------GPFSEVLEEGRVSK 190 (230)
T ss_pred cccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCCC---------cchHHHHhhcceee
Confidence 111111111111 2223334444444 2233333 368889999999964322 12445788999999
Q ss_pred EEEec--CcCCeee
Q 026711 218 SFFIF--SIPGKIV 229 (234)
Q Consensus 218 vf~~~--~~~~~~~ 229 (234)
++++| +.|..++
T Consensus 191 ~lyGHlHgv~~p~~ 204 (230)
T COG1768 191 CLYGHLHGVPRPNI 204 (230)
T ss_pred EEeeeccCCCCCCC
Confidence 99854 4444433
No 43
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.29 E-value=2.4e-05 Score=67.46 Aligned_cols=63 Identities=8% Similarity=-0.116 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 159 SGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 159 ~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
...+.+++..++|++...+-+|+++|-+.......... .......+.++. +||++|++|+|-.
T Consensus 167 d~~~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~-----~~~~~~~la~~~~~vD~IlgGHsH~~ 230 (277)
T cd07410 167 DPVETAKKYVPKLRAEGADVVVVLAHGGFERDLEESLT-----GENAAYELAEEVPGIDAILTGHQHRR 230 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCCcCCCcccccC-----CccHHHHHHhcCCCCcEEEeCCCccc
Confidence 34455667677777656678999999877653210000 011122355553 8999999999854
No 44
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.26 E-value=6.5e-06 Score=69.21 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred HHHHHHHHhCccEEEEecCcCCeeecc
Q 026711 205 PLHHIFMKFGVVRSFFIFSIPGKIVPF 231 (234)
Q Consensus 205 ~l~~ll~k~~Vd~vf~~~~~~~~~~~~ 231 (234)
.+.++++++++++++|+|.|-..+.|+
T Consensus 176 ~~~~~~~~~~~~~~i~GHtH~~~~~~~ 202 (231)
T TIGR01854 176 EVAAVMRRYGVDRLIHGHTHRPAIHPL 202 (231)
T ss_pred HHHHHHHHcCCCEEEECCccCcceeec
Confidence 356677889999999999998887775
No 45
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.20 E-value=4.6e-05 Score=63.14 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=91.1
Q ss_pred cEEEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCC--CCchhhHhh----hhccCCCCCCeEEecccCCC
Q 026711 49 DFYFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG--EDDPLKQNA----TWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 49 ~~~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~--~~d~~~~~~----~~~~~~l~~P~~~v~GNHD~ 120 (234)
..+++.+.| |.. ...+++...+...++|+++..||++ .-++.-... .+......+|++++|||=|
T Consensus 3 ~mkil~vtDlHg~~------~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD- 75 (226)
T COG2129 3 KMKILAVTDLHGSE------DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCD- 75 (226)
T ss_pred cceEEEEeccccch------HHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCC-
Confidence 468889999 532 2334444455557899999999986 222211111 2235567899999999999
Q ss_pred cccC---ceE-EEeC-C---CCCceEEEEEe-CCCCcCCCCCCCCCCcHHHH-HHHHHHHHHhccCCeEEEEeecccccc
Q 026711 121 EVGC---FQE-QIRL-P---HGEALDIIGVN-TGSLQGKIPTALPSASGDLL-LNWLKSALEATNGQWCIVVGFHPLVIC 190 (234)
Q Consensus 121 ~~g~---~~~-~~~~-P---~~~~~~~i~lD-T~~~~~~~~~~~~~~~~~~q-l~wL~~~L~~~~~~~~IV~~HhP~~~~ 190 (234)
...- ..+ -..+ . .-+...|+++= ++. ..+ +.+....+++ +.-+++.++...+.-.|+..|+|||..
T Consensus 76 ~~~v~~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~--tp~--nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt 151 (226)
T COG2129 76 PPEVIDVLKNAGVNVHGRVVEIGGYGFVGFGGSNP--TPF--NTPREFSEDEIYSKLKSLVKKADNPVNILLTHAPPYGT 151 (226)
T ss_pred hHHHHHHHHhcccccccceEEecCcEEEEecccCC--CCC--CCccccCHHHHHHHHHHHHhcccCcceEEEecCCCCCc
Confidence 3211 000 0000 0 11445555531 111 111 1122333344 455555555554433399999999986
Q ss_pred CcccchHH-HHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 191 EEHEEQLE-AKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 191 ~~~~~~~~-~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
...- ... .---...+..++++.+.-+.+|+|=|
T Consensus 152 ~~d~-~~g~~hvGS~~vr~~ieefqP~l~i~GHIH 185 (226)
T COG2129 152 LLDT-PSGYVHVGSKAVRKLIEEFQPLLGLHGHIH 185 (226)
T ss_pred cccC-CCCccccchHHHHHHHHHhCCceEEEeeec
Confidence 5431 111 11134567779999999999998765
No 46
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.16 E-value=2.6e-05 Score=71.99 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=44.0
Q ss_pred CceEEEEEeCCCCcCCCCC------------CCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcc---------
Q 026711 135 EALDIIGVNTGSLQGKIPT------------ALPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEH--------- 193 (234)
Q Consensus 135 ~~~~~i~lDT~~~~~~~~~------------~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~--------- 193 (234)
..+.|++||+-.+-..... ....-.+.+|++||++.|+.++++|+||+.-.|+......
T Consensus 262 ~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~a~~kvi~s~v~~~~~~~~~~~~~~~~~ 341 (453)
T PF09423_consen 262 DLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQATWKVIGSSVPFSPLNFPDAAEGLPFN 341 (453)
T ss_dssp TTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--SSEEEEE-SS--S---SS-SS-S--EE
T ss_pred CceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCCCcEEEEEeCCceecccccccccccccC
Confidence 4499999999866442111 1113357899999999999999999999976666543211
Q ss_pred cchH-HHHHhHHHHHHHHHHhCcc
Q 026711 194 EEQL-EAKKIYEPLHHIFMKFGVV 216 (234)
Q Consensus 194 ~~~~-~~~~~~~~l~~ll~k~~Vd 216 (234)
.+.. .-..-++.|..+|.+.++.
T Consensus 342 ~d~W~g~~~er~~Ll~~l~~~~~~ 365 (453)
T PF09423_consen 342 MDSWDGYPAERQRLLDFLRESGIR 365 (453)
T ss_dssp TTSGGGSHHHHHHHHHHHHHTT--
T ss_pred CCchhhCHHHHHHHHHHHHhhCCC
Confidence 0111 1123467788899988887
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.16 E-value=5.9e-06 Score=64.75 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
++++++|-+... ..+.+.++. .+ ++|.|+++||+......-. .....|++.++||||
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~-~~--~~d~ii~~GD~~~~~~~~~------~~~~~~~~~V~GNhD 57 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALEL-FG--DVDLIIHAGDVLYPGPLNE------LELKAPVIAVRGNCD 57 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHH-hc--CCCEEEECCccccccccch------hhcCCcEEEEeCCCC
Confidence 367889954321 223333332 22 2899999999853221100 234678999999999
No 48
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.13 E-value=3.3e-06 Score=71.41 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCCh---hHHHHHHHHHHHHHhCCCceEEEcCCCCC-----C--chhhHhhhhc---cCCCCCCeEEeccc
Q 026711 51 YFISVTGGFRPLE---QQTLLLKQMEDVAKSYDARFVINTSELGE-----D--DPLKQNATWL---FPSLKVPWYTTKAS 117 (234)
Q Consensus 51 ~F~~~gdG~~~~~---~q~~~~~~i~~~~~~~~~dfvl~~GD~~~-----~--d~~~~~~~~~---~~~l~~P~~~v~GN 117 (234)
++++++|-+.+.. ....+.+.+.. ...+||.|+++||+-+ + .+......+. +....+|++.++||
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~--~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GN 79 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRG--EARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGN 79 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHh--hhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5778899332221 12234444432 2358999999999731 1 1111122222 33345899999999
Q ss_pred CCCc
Q 026711 118 KEKE 121 (234)
Q Consensus 118 HD~~ 121 (234)
||..
T Consensus 80 HD~~ 83 (241)
T PRK05340 80 RDFL 83 (241)
T ss_pred Cchh
Confidence 9944
No 49
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.96 E-value=0.00036 Score=59.59 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCCCchhh-----HhhhhccCCCCCCeEEecccCCCcccC-------------c--
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGEDDPLK-----QNATWLFPSLKVPWYTTKASKEKEVGC-------------F-- 125 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~-----~~~~~~~~~l~~P~~~v~GNHD~~~g~-------------~-- 125 (234)
.+++..+++..++ ++++++.+||+-...+.. +...+.+..+...+ .++||||+..|. +
T Consensus 24 ~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~-~~~GNHefd~G~~~l~~~~~~~~~~~l~ 101 (257)
T cd07408 24 AKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDA-VTPGNHEFDYGLDRLKELSKEADFPFLS 101 (257)
T ss_pred HHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcE-EccccccccCCHHHHHHHHhhCCCCEEE
Confidence 4566666655444 678999999983222211 11122355556665 568999954332 0
Q ss_pred ----eEE----EeCC------C-CCceEEEEEeCCCCcCC-CCCC-CC--CCcHHHHH-HHHHHHHHhccCCeEEEEeec
Q 026711 126 ----QEQ----IRLP------H-GEALDIIGVNTGSLQGK-IPTA-LP--SASGDLLL-NWLKSALEATNGQWCIVVGFH 185 (234)
Q Consensus 126 ----~~~----~~~P------~-~~~~~~i~lDT~~~~~~-~~~~-~~--~~~~~~ql-~wL~~~L~~~~~~~~IV~~Hh 185 (234)
... +.-| . |-.+-|+++-+...... .... .. ..+..+.+ +++...|++...+-+|++.|-
T Consensus 102 aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~ 181 (257)
T cd07408 102 ANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHL 181 (257)
T ss_pred EEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCc
Confidence 000 0011 2 45677788755321110 0111 00 11222222 332455555567889999998
Q ss_pred cccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 186 PLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 186 P~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
+......... .. .+.++. +||++|.+|+|-.
T Consensus 182 G~~~~~~~~~-------~~---~la~~~~giDvIigGH~H~~ 213 (257)
T cd07408 182 GVDRTSSPWT-------ST---ELAANVTGIDLIIDGHSHTT 213 (257)
T ss_pred CcCCCCCCcc-------HH---HHHHhCCCceEEEeCCCccc
Confidence 8765321111 11 233344 8999999998853
No 50
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.93 E-value=1.7e-05 Score=70.53 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=44.2
Q ss_pred EEEEEeC---CCCCC-----hhHHHHHHHHHHHHHhCCCceEEEcCCCCCC----ch-h--hHhh--hhccCCCCCCeEE
Q 026711 51 YFISVTG---GFRPL-----EQQTLLLKQMEDVAKSYDARFVINTSELGED----DP-L--KQNA--TWLFPSLKVPWYT 113 (234)
Q Consensus 51 ~F~~~gd---G~~~~-----~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~----d~-~--~~~~--~~~~~~l~~P~~~ 113 (234)
+|+.++| |.... ..+...++.+.+.+++.+||+||++||+-.. .. . +... +..+...++|++.
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~ 81 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHV 81 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 6788888 53211 1134556666666778899999999998211 11 1 1111 2224456899999
Q ss_pred ecccCCC
Q 026711 114 TKASKEK 120 (234)
Q Consensus 114 v~GNHD~ 120 (234)
++||||.
T Consensus 82 I~GNHD~ 88 (340)
T PHA02546 82 LVGNHDM 88 (340)
T ss_pred EccCCCc
Confidence 9999994
No 51
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.91 E-value=3e-05 Score=70.61 Aligned_cols=70 Identities=6% Similarity=0.074 Sum_probs=44.8
Q ss_pred EEEEEeC---CCC--CC---hhHHHHHHHHHHHHHhCCCceEEEcCCCCCC--chhhH-hhh----hccCCCCCCeEEec
Q 026711 51 YFISVTG---GFR--PL---EQQTLLLKQMEDVAKSYDARFVINTSELGED--DPLKQ-NAT----WLFPSLKVPWYTTK 115 (234)
Q Consensus 51 ~F~~~gd---G~~--~~---~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~--d~~~~-~~~----~~~~~l~~P~~~v~ 115 (234)
+|+.++| |.. +. ..+..+++.+.+.+++.+||+||++||+-.. .+.+. ..+ ..+...++|+++|+
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I~ 81 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVLA 81 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEEc
Confidence 6777888 421 11 2344556667667777899999999998421 11111 111 12455679999999
Q ss_pred ccCCC
Q 026711 116 ASKEK 120 (234)
Q Consensus 116 GNHD~ 120 (234)
||||.
T Consensus 82 GNHD~ 86 (407)
T PRK10966 82 GNHDS 86 (407)
T ss_pred CCCCC
Confidence 99993
No 52
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.91 E-value=0.00043 Score=59.19 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=44.2
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc-hhhHhhhhccCCCCCCeEEecccCCCccc
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD-PLKQNATWLFPSLKVPWYTTKASKEKEVG 123 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d-~~~~~~~~~~~~l~~P~~~v~GNHD~~~g 123 (234)
+++.+|| |.. ....+.+.+.+..++.++||+|.-||+.... ..-....+.+..+.+- ..++|||+|..+
T Consensus 1 ~ilfigdi~g~~---G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D-~iTlGNH~fD~g 72 (255)
T cd07382 1 KILFIGDIVGKP---GRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVD-VITMGNHTWDKK 72 (255)
T ss_pred CEEEEEeCCCHH---HHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCC-EEEecccccCcc
Confidence 3678899 654 3446777777777778899999999983211 1112223334555555 455599997665
No 53
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.89 E-value=2.1e-05 Score=71.17 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=42.3
Q ss_pred EEEEEeC---CCC---CC---hhHHHHHHHHHHHHHhCCCceEEEcCCCC-CCchh------hHhhhhccCCCCCCeEEe
Q 026711 51 YFISVTG---GFR---PL---EQQTLLLKQMEDVAKSYDARFVINTSELG-EDDPL------KQNATWLFPSLKVPWYTT 114 (234)
Q Consensus 51 ~F~~~gd---G~~---~~---~~q~~~~~~i~~~~~~~~~dfvl~~GD~~-~~d~~------~~~~~~~~~~l~~P~~~v 114 (234)
+|+.++| |.. +. .++......+.+.+.+.++||||+.||+= ...|. ..+.++.+...++|+|++
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I 81 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI 81 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe
Confidence 6788888 511 11 12333333334456678999999999982 12221 112223355567999999
Q ss_pred cccCCC
Q 026711 115 KASKEK 120 (234)
Q Consensus 115 ~GNHD~ 120 (234)
+||||.
T Consensus 82 ~GNHD~ 87 (390)
T COG0420 82 AGNHDS 87 (390)
T ss_pred cCCCCc
Confidence 999993
No 54
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.86 E-value=0.00049 Score=65.13 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=87.7
Q ss_pred CCccEEEEEEeC--CCCCCh-----hHHHHHHHHHHHHHh----CCCceEEEcCCCCCCchh--h---HhhhhccCCCCC
Q 026711 46 KGLDFYFISVTG--GFRPLE-----QQTLLLKQMEDVAKS----YDARFVINTSELGEDDPL--K---QNATWLFPSLKV 109 (234)
Q Consensus 46 ~~~~~~F~~~gd--G~~~~~-----~q~~~~~~i~~~~~~----~~~dfvl~~GD~~~~d~~--~---~~~~~~~~~l~~ 109 (234)
....++++.+.| |+.... .-.+++..+++..++ ....+++..||.-...+. + +...+.+..++.
T Consensus 31 ~~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~ 110 (551)
T PRK09558 31 KTYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY 110 (551)
T ss_pred CceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCC
Confidence 346899999999 653110 223455555544221 344689999997211111 1 111222455554
Q ss_pred CeEEecccCCCcccC-----ceEE------------------EeCC------CCCceEEEEEeCCCCcCCCCC-----CC
Q 026711 110 PWYTTKASKEKEVGC-----FQEQ------------------IRLP------HGEALDIIGVNTGSLQGKIPT-----AL 155 (234)
Q Consensus 110 P~~~v~GNHD~~~g~-----~~~~------------------~~~P------~~~~~~~i~lDT~~~~~~~~~-----~~ 155 (234)
- +.++||||+..|. +... +.-| .|-.+-||++=|.. ...+.. +-
T Consensus 111 D-a~tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~-~~~~~~~~~~~~~ 188 (551)
T PRK09558 111 D-AMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTED-TAKIGNPEYFTDI 188 (551)
T ss_pred C-EEcccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccc-cccccCCCCcCCc
Confidence 4 4567999955442 0000 0011 34567778874432 111111 11
Q ss_pred CCCcHHHHHHHHHHHHHh-ccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh---CccEEEEecCcC
Q 026711 156 PSASGDLLLNWLKSALEA-TNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF---GVVRSFFIFSIP 225 (234)
Q Consensus 156 ~~~~~~~ql~wL~~~L~~-~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~---~Vd~vf~~~~~~ 225 (234)
...+..+..+-.-++|++ .+.+-+|++.|-............. .. ..+.++. +||+++-+|+|-
T Consensus 189 ~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~~~--~d----~~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 189 EFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHGSNAP--GD----VEMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred eECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccCCCCc--cH----HHHHHhCCccCceEEEeCCCCc
Confidence 123344545555566775 3557888899987754322111100 01 1233443 799999999994
No 55
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=2.3e-05 Score=66.90 Aligned_cols=70 Identities=10% Similarity=0.206 Sum_probs=42.4
Q ss_pred EEEEEeC---CCC--CC---hhHHHHHHHHHHHHHhCCCceEEEcCCCCCC-c-hhh-----HhhhhccCCCC-CCeEEe
Q 026711 51 YFISVTG---GFR--PL---EQQTLLLKQMEDVAKSYDARFVINTSELGED-D-PLK-----QNATWLFPSLK-VPWYTT 114 (234)
Q Consensus 51 ~F~~~gd---G~~--~~---~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~-d-~~~-----~~~~~~~~~l~-~P~~~v 114 (234)
+|+.++| |.. +. .++...++.+.+.+.+.++|+|+++||+-.. . +.+ ......+.... +|++.+
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i 81 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVI 81 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 6777777 422 11 1233455566666667899999999998321 1 111 11122234444 999999
Q ss_pred cccCCC
Q 026711 115 KASKEK 120 (234)
Q Consensus 115 ~GNHD~ 120 (234)
+||||.
T Consensus 82 ~GNHD~ 87 (253)
T TIGR00619 82 SGNHDS 87 (253)
T ss_pred ccCCCC
Confidence 999993
No 56
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.81 E-value=0.00041 Score=59.48 Aligned_cols=43 Identities=5% Similarity=0.021 Sum_probs=26.7
Q ss_pred HHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 168 KSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 168 ~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
.+.+++...+-+|+..|-+... +. .+.++. +||+++.+|+|-.
T Consensus 176 ~~~~~~~~~D~iI~l~H~g~~~------~~----------~la~~~~~iDlilgGH~H~~ 219 (264)
T cd07411 176 VKLRREEGVDVVVLLSHNGLPV------DV----------ELAERVPGIDVILSGHTHER 219 (264)
T ss_pred HHHHHhCCCCEEEEEecCCchh------hH----------HHHhcCCCCcEEEeCccccc
Confidence 3333334557888888976531 11 133444 7999999999843
No 57
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.80 E-value=0.00094 Score=56.49 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=37.5
Q ss_pred EEEEEEeC--CCCC----ChhHHHHHHHHHHHHHhCCCc-eEEEcCCCCCCchh--hH---hhhhccCCCCCCeEEeccc
Q 026711 50 FYFISVTG--GFRP----LEQQTLLLKQMEDVAKSYDAR-FVINTSELGEDDPL--KQ---NATWLFPSLKVPWYTTKAS 117 (234)
Q Consensus 50 ~~F~~~gd--G~~~----~~~q~~~~~~i~~~~~~~~~d-fvl~~GD~~~~d~~--~~---~~~~~~~~l~~P~~~v~GN 117 (234)
++++.++| |... ......+.+.+++..+ .++| +++.+||.-..... +. ...+.+..+. .-+.++||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~-~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-~d~~~~GN 78 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERA-ENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG-YDAVTIGN 78 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHh-cCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC-CCEEeecc
Confidence 36778888 4331 1233455666665543 4566 78999998321111 11 1112244444 34677899
Q ss_pred CCCc
Q 026711 118 KEKE 121 (234)
Q Consensus 118 HD~~ 121 (234)
||+.
T Consensus 79 He~d 82 (252)
T cd00845 79 HEFD 82 (252)
T ss_pred cccc
Confidence 9943
No 58
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.79 E-value=0.00038 Score=59.48 Aligned_cols=142 Identities=9% Similarity=0.037 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhCCCc-eEEEcCCCCCCchh--h---HhhhhccCCCCCCeEEecccCCCcccC-------------ce
Q 026711 66 TLLLKQMEDVAKSYDAR-FVINTSELGEDDPL--K---QNATWLFPSLKVPWYTTKASKEKEVGC-------------FQ 126 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~d-fvl~~GD~~~~d~~--~---~~~~~~~~~l~~P~~~v~GNHD~~~g~-------------~~ 126 (234)
.++...+++..++ +++ +++.+||+-...+. + +...+.+..++.. +.++||||+..|. +.
T Consensus 24 ~rl~~~i~~~r~~-~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~d-~~~~GNHefd~g~~~l~~~~~~~~~~~L 101 (257)
T cd07406 24 ARFATLRKQLRKE-NPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGVD-LACFGNHEFDFGEDQLQKRLGESKFPWL 101 (257)
T ss_pred HHHHHHHHHHHhc-CCCEEEEECCCccCCccchhhcCCccHHHHHHhcCCc-EEeecccccccCHHHHHHHHhhCCCCEE
Confidence 4566666665443 456 89999998322211 1 1112224555544 6689999953322 10
Q ss_pred EE---E----e----C-C------CCCceEEEEEeCCCCcCC---CCCCC-CCCcHHHHHHHHHHHHHhccCCeEEEEee
Q 026711 127 EQ---I----R----L-P------HGEALDIIGVNTGSLQGK---IPTAL-PSASGDLLLNWLKSALEATNGQWCIVVGF 184 (234)
Q Consensus 127 ~~---~----~----~-P------~~~~~~~i~lDT~~~~~~---~~~~~-~~~~~~~ql~wL~~~L~~~~~~~~IV~~H 184 (234)
.. + . . | .|-.+-|+++.+...... ...+- .....+.-.+|+ +.+++...+-+|++.|
T Consensus 102 ~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v-~~~~~~~~D~iVvl~H 180 (257)
T cd07406 102 SSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELV-DELREQGADLIIALTH 180 (257)
T ss_pred EEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEcCHHHHHHHHH-HHHHhCCCCEEEEEec
Confidence 00 0 0 0 1 245677888866532211 00010 112222223444 3455556678888889
Q ss_pred ccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 185 HPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 185 hP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
-+... +. .+.++. +||+++.+|+|-.
T Consensus 181 ~g~~~------d~----------~la~~~~~iD~IlgGH~H~~ 207 (257)
T cd07406 181 MRLPN------DK----------RLAREVPEIDLILGGHDHEY 207 (257)
T ss_pred cCchh------hH----------HHHHhCCCCceEEeccccee
Confidence 76521 11 234444 8999999998864
No 59
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=97.78 E-value=6.2e-05 Score=68.38 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=28.4
Q ss_pred ccEEEEEEeC---CCCCC-----hhHHHHHHHHHHHHHhCCCceEEEcCCC
Q 026711 48 LDFYFISVTG---GFRPL-----EQQTLLLKQMEDVAKSYDARFVINTSEL 90 (234)
Q Consensus 48 ~~~~F~~~gd---G~~~~-----~~q~~~~~~i~~~~~~~~~dfvl~~GD~ 90 (234)
..++|+.++| |.... .++....+.+.+.+.+.++|+||++||+
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDL 52 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDL 52 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 4579999999 43211 1122334445556667899999999998
No 60
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.78 E-value=0.00066 Score=61.24 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=61.3
Q ss_pred CccEEEEEEeC----CCCCCh---------hHHHHHHHHHHH-HHhCCCceEEEcCCC---C--CCchhhHhhhhc----
Q 026711 47 GLDFYFISVTG----GFRPLE---------QQTLLLKQMEDV-AKSYDARFVINTSEL---G--EDDPLKQNATWL---- 103 (234)
Q Consensus 47 ~~~~~F~~~gd----G~~~~~---------~q~~~~~~i~~~-~~~~~~dfvl~~GD~---~--~~d~~~~~~~~~---- 103 (234)
+..++...++| |..+.. ..+..++..-+. ....+||.++++||+ | ..+++|++.++.
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 57899999999 521110 011112222222 234799999999998 2 246778766443
Q ss_pred c-CCCCCCeEEecccCCCcccC---------ceEEEeCC-----CCCceEEEEEeCCCCcC
Q 026711 104 F-PSLKVPWYTTKASKEKEVGC---------FQEQIRLP-----HGEALDIIGVNTGSLQG 149 (234)
Q Consensus 104 ~-~~l~~P~~~v~GNHD~~~g~---------~~~~~~~P-----~~~~~~~i~lDT~~~~~ 149 (234)
+ ....+|++.+|||||..-++ |...+. | +.++..|+++|++....
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg-~~~r~f~v~~~tf~~~d~~~ls~ 185 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVFG-PTERRFDVGNLTFVMFDSNALSG 185 (410)
T ss_pred hCCCCCCeeEEeCCccccccccccchhHHHHHHHhhc-chhhhhccCCceeEEeeehhhcC
Confidence 2 33589999999999932222 111111 1 24778899999886543
No 61
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.70 E-value=0.0013 Score=57.13 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHH--hCccEEEEecCcCC
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMK--FGVVRSFFIFSIPG 226 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k--~~Vd~vf~~~~~~~ 226 (234)
..+..+-.-++|++...+-+|+..|-............. .......++.+ -+||+++++|+|-.
T Consensus 176 ~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~~~~---~~~~~~~l~~~~~~~iD~IlgGHsH~~ 241 (288)
T cd07412 176 EVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDTCSA---ASGPIADIVNRLDPDVDVVFAGHTHQA 241 (288)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCccccc---cChhHHHHHhhcCCCCCEEEeCccCcc
Confidence 333444444455554567888889977654322111000 01112234444 37999999999854
No 62
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.68 E-value=0.00024 Score=61.64 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=43.2
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCC--CchhhHhhhhccCCC--CCCeEEecccCCC
Q 026711 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE--DDPLKQNATWLFPSL--KVPWYTTKASKEK 120 (234)
Q Consensus 45 ~~~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~--~d~~~~~~~~~~~~l--~~P~~~v~GNHD~ 120 (234)
.....++++.+.|=+..... .+..+.+.+..+ ..||+|+++||+-. ..+........+..+ ..++|++.||||+
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~-~~~~~~~~~i~~-~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~ 117 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR-EEKLALLIAIAN-ELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDY 117 (284)
T ss_pred cccCCeEEEEeehhhhchhh-HHHHHHHHHHHh-cCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEeccccc
Confidence 33456778888994432222 333334444433 45599999999843 222222222223333 5668999999994
Q ss_pred c
Q 026711 121 E 121 (234)
Q Consensus 121 ~ 121 (234)
.
T Consensus 118 ~ 118 (284)
T COG1408 118 G 118 (284)
T ss_pred c
Confidence 3
No 63
>PRK09453 phosphodiesterase; Provisional
Probab=97.65 E-value=0.00013 Score=59.05 Aligned_cols=66 Identities=6% Similarity=0.089 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCch--h------hHhhhhccCCCCCCeEEecccCCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--L------KQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~--~------~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
+.++++|-+... .. .+.+.+..++.++|.|+++||+....+ . ..+..+.+..+..|++.++||||.
T Consensus 2 ri~viSD~Hg~~---~~-~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 2 KLMFASDTHGSL---PA-TEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDS 75 (182)
T ss_pred eEEEEEeccCCH---HH-HHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcc
Confidence 678899954321 22 233333445578999999999842111 1 112223345566789999999994
No 64
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=97.65 E-value=0.0001 Score=58.11 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhC-CCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSY-DARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~-~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
++++++|-+..... .+.+.+..+.. ++|.|+++||+... ...+.+..+..|++.|+||||.
T Consensus 2 ~i~viSD~H~~~~~----~~~~~~~~~~~~~~d~ii~~GD~~~~-----~~~~~l~~~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRA----TELPVELFNLESNVDLVIHAGDLTSP-----FVLKEFEDLAAKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcch----hHhHHHHHhhccCCCEEEEcCCCCCH-----HHHHHHHHhCCceEEEccCCCc
Confidence 67899994432222 22222333344 89999999999621 1222234456789999999994
No 65
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.64 E-value=0.001 Score=53.71 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=39.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCC
Q 026711 52 FISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 52 F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
..+++|.+-+... ..+.+.+.+..++.++|.|+++||+... ...+.+..+..|++.|.||||.
T Consensus 2 i~viSDtHl~~~~-~~~~~~~~~~~~~~~~d~iih~GDi~~~-----~~~~~l~~~~~~~~~V~GN~D~ 64 (178)
T cd07394 2 VLVIGDLHIPHRA-SDLPAKFKKLLVPGKIQHVLCTGNLCSK-----ETYDYLKTIAPDVHIVRGDFDE 64 (178)
T ss_pred EEEEEecCCCCCc-hhhHHHHHHHhccCCCCEEEECCCCCCH-----HHHHHHHhhCCceEEEECCCCc
Confidence 5688996632211 2344445555554679999999998541 1222233445589999999994
No 66
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.60 E-value=8.5e-05 Score=64.20 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=40.7
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
+.+++|| |.. ..+.+.+++..-..++|.++++||+....+.-.+..+.+..++.+++.++||||
T Consensus 2 ~~~vIGDIHG~~-----~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD 67 (275)
T PRK00166 2 ATYAIGDIQGCY-----DELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHD 67 (275)
T ss_pred cEEEEEccCCCH-----HHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChh
Confidence 4689999 533 345555554422346799999999854333223333344455667899999999
No 67
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.55 E-value=0.0002 Score=57.44 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCC--C--chh-hHhh-hhccCCCCCCeEEecccCCCcc
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGE--D--DPL-KQNA-TWLFPSLKVPWYTTKASKEKEV 122 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~--~--d~~-~~~~-~~~~~~l~~P~~~v~GNHD~~~ 122 (234)
....+.+.+..++.+||.|+++||+-. . .+. +... .......++|++.++||||...
T Consensus 27 ~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 27 EDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 356667777777789999999999832 1 111 1111 1123456889999999999433
No 68
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.53 E-value=0.0034 Score=53.96 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=44.7
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc-hhhHhhhhccCCCCCCeEEecccCCCcccC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD-PLKQNATWLFPSLKVPWYTTKASKEKEVGC 124 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d-~~~~~~~~~~~~l~~P~~~v~GNHD~~~g~ 124 (234)
+++.+|| |.. ....+.+.+.+..++.++||+|.-|||.... ..-....+.+....+-++.+ |||.|..+.
T Consensus 2 ~ilfiGDi~G~~---Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~Dkge 74 (266)
T TIGR00282 2 KFLFIGDVYGKA---GRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWFQKL 74 (266)
T ss_pred eEEEEEecCCHH---HHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhccCcH
Confidence 6788999 543 3445667777777778899999999994211 01112223345556665555 999976543
No 69
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00025 Score=64.60 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCceEEEEEeCCCCcCCCCC---CC----------CCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccc-----
Q 026711 134 GEALDIIGVNTGSLQGKIPT---AL----------PSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEE----- 195 (234)
Q Consensus 134 ~~~~~~i~lDT~~~~~~~~~---~~----------~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~----- 195 (234)
|+-+.+.+|||-.|-.+-+. ++ ..-.+++|.+||++.|..+++.|.||+.--|+--....+.
T Consensus 299 G~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~SkatWnVia~q~~~~~~~~d~~~a~~~ 378 (522)
T COG3540 299 GPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKATWNVIAQQMPLGLVVFDGSPATEG 378 (522)
T ss_pred ccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcchhhhhhhhhcceeEeecCCCccccC
Confidence 46678899999877632111 11 1235789999999999999999999988887743321110
Q ss_pred -----h--HHHHHhHHHHHHHHHHhCcc
Q 026711 196 -----Q--LEAKKIYEPLHHIFMKFGVV 216 (234)
Q Consensus 196 -----~--~~~~~~~~~l~~ll~k~~Vd 216 (234)
+ .....-++.|..++...++.
T Consensus 379 ~~a~~D~wdGy~~~RerLl~fi~~~~~~ 406 (522)
T COG3540 379 QEANADGWDGYPAGRERLLRFIADRKIR 406 (522)
T ss_pred ccccccCcCCCcccHHHHHHHHHhcCCC
Confidence 0 01123466888999998877
No 70
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.49 E-value=0.00014 Score=62.32 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=40.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 53 ~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
+++||-+. .-..+.+.++++....+.|.++++||+....+.-.+..+.+..++..++.++||||
T Consensus 2 yvIGDIHG---~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD 65 (257)
T cd07422 2 YAIGDIQG---CYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHD 65 (257)
T ss_pred EEEECCCC---CHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCch
Confidence 68899332 11345555555433346799999999854333223344444455567899999999
No 71
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.47 E-value=0.0049 Score=53.52 Aligned_cols=56 Identities=11% Similarity=-0.137 Sum_probs=31.6
Q ss_pred HHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 168 KSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 168 ~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
-++|++...+-+|++.|-.......+..... ...++.+.+.-.+||+++.+|+|-.
T Consensus 166 v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~---~~~~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 166 VPELKQEKPDIVIAATHMGHYDNGEHGSNAP---GDVEMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHHHcCCCEEEEEecccccCCccccccCc---hHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 3446655667889999988754322211100 0112222222248999999999854
No 72
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.46 E-value=0.00052 Score=56.53 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCCeee
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPGKIV 229 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~ 229 (234)
...+.+..++++++++.++|+|.|-....
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 204 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPALH 204 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCeE
Confidence 45556677788899999999999866543
No 73
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.46 E-value=0.00023 Score=56.79 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=27.4
Q ss_pred CCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 79 YDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 79 ~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
.++|.|+++||+...... ....+.+..++.|++.++||||
T Consensus 41 ~~~d~vi~~GDl~~~~~~-~~~~~~l~~~~~~~~~v~GNHD 80 (168)
T cd07390 41 GPDDTVYHLGDFSFGGKA-GTELELLSRLNGRKHLIKGNHD 80 (168)
T ss_pred CCCCEEEEeCCCCCCCCh-HHHHHHHHhCCCCeEEEeCCCC
Confidence 478999999998532221 1112234556789999999999
No 74
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.43 E-value=0.0057 Score=52.92 Aligned_cols=144 Identities=14% Similarity=0.031 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCCCchh-----hHhhhhccCCCCCCeEEecccCCCcccC-------------ce-
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGEDDPL-----KQNATWLFPSLKVPWYTTKASKEKEVGC-------------FQ- 126 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~-----~~~~~~~~~~l~~P~~~v~GNHD~~~g~-------------~~- 126 (234)
.+++..+++..++....+++..||.-...+. -+...+.+..+... +.++||||+..|. +.
T Consensus 35 ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~g~D-~~~lGNHefd~G~~~l~~~~~~~~~p~l~ 113 (281)
T cd07409 35 ARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLLGYD-AMTLGNHEFDDGVEGLAPFLNNLKFPVLS 113 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhcCCC-EEEeccccccCCHHHHHHHHHhCCCCEEE
Confidence 4566666655433333467889997322211 11112235566665 4567999954332 00
Q ss_pred -----EE-------EeCC------CCCceEEEEEeCCCCcCCCC--CCCCCCcHHHHHHHHHHHHHhccCCeEEEEeecc
Q 026711 127 -----EQ-------IRLP------HGEALDIIGVNTGSLQGKIP--TALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (234)
Q Consensus 127 -----~~-------~~~P------~~~~~~~i~lDT~~~~~~~~--~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP 186 (234)
+. +..| .|-.+-||++-+........ .+.......+.++-.-++|++...+-+|++.|-.
T Consensus 114 aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G 193 (281)
T cd07409 114 ANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSG 193 (281)
T ss_pred EeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 00 0011 24556778875543211111 1111122223333333445544556788888965
Q ss_pred ccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 187 LVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
.-. +. .+.++. +||+++++|+|-.
T Consensus 194 ~~~------d~----------~la~~~~giD~IiggH~H~~ 218 (281)
T cd07409 194 YEV------DK----------EIARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred chh------HH----------HHHHcCCCCcEEEeCCcCcc
Confidence 321 11 233444 8999999998864
No 75
>PHA02239 putative protein phosphatase
Probab=97.43 E-value=0.0003 Score=59.44 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=38.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhC-CCceEEEcCCCCCCchhhHhhhhc---cCCCCCCeEEecccCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSY-DARFVINTSELGEDDPLKQNATWL---FPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~-~~dfvl~~GD~~~~d~~~~~~~~~---~~~l~~P~~~v~GNHD 119 (234)
+++++||-+.. . ..+.+.+++..... ..|.++++||+....+......+. +.....+++.++||||
T Consensus 2 ~~~~IsDIHG~-~--~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE 71 (235)
T PHA02239 2 AIYVVPDIHGE-Y--QKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHD 71 (235)
T ss_pred eEEEEECCCCC-H--HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcH
Confidence 57899994421 1 33555555443332 359999999985433322222222 1122457899999999
No 76
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.43 E-value=0.00024 Score=59.66 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCceEEEcCCCCCC--c-hhhHhhhhccCCCCCCeEEecccCCC
Q 026711 67 LLLKQMEDVAKSYDARFVINTSELGED--D-PLKQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 67 ~~~~~i~~~~~~~~~dfvl~~GD~~~~--d-~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
...+.+.+..+..+||.||++||+... . ..++...+.+..+..+++.++||||.
T Consensus 45 ~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~ 101 (225)
T TIGR00024 45 EIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILIRGNHDA 101 (225)
T ss_pred HHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEECCCCCC
Confidence 456666666677899999999998421 1 23433333455566799999999993
No 77
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.38 E-value=0.01 Score=51.50 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-Ccc-EEEEecCcC
Q 026711 165 NWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVV-RSFFIFSIP 225 (234)
Q Consensus 165 ~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd-~vf~~~~~~ 225 (234)
+|+.+.|++...+-+|++.|-..-... +.... ...+.+++ ++| +++.+|||=
T Consensus 177 ~~v~~~l~~~~~DvIIvlsH~G~~~d~------~~~~~---~~~la~~~~~id~~Ii~GHsH~ 230 (282)
T cd07407 177 PWFQDAINNEDVDLILVLGHMPVRDDA------EFKVL---HDAIRKIFPDTPIQFLGGHSHV 230 (282)
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCCc------cHHHH---HHHHHHhCCCCCEEEEeCCccc
Confidence 488888876566788889997764421 11111 12344555 677 799999994
No 78
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.33 E-value=0.015 Score=59.92 Aligned_cols=60 Identities=5% Similarity=-0.134 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 161 ~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
.+..+-.-.+|++...+-+|++.|-..-......... .....|.++. +||+++.+|||-.
T Consensus 220 v~~~~~~v~~lk~~gaDvII~l~H~G~~~~~~~~~~e------n~~~~la~~~~gID~Il~GHsH~~ 280 (1163)
T PRK09419 220 VEEANKTIPEMKKGGADVIVALAHSGIESEYQSSGAE------DSVYDLAEKTKGIDAIVAGHQHGL 280 (1163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCcCCCCCCCCcc------hHHHHHHHhCCCCcEEEeCCCccc
Confidence 3333333445665566788889998775432111111 1123355565 8999999999753
No 79
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.31 E-value=0.00035 Score=57.70 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
+++++||-+.. -..+.+.++......++|.++++||+....+.-.+..+.+.. .+++.+.||||
T Consensus 2 ri~~isDiHg~---~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe 65 (207)
T cd07424 2 RDFVVGDIHGH---YSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHE 65 (207)
T ss_pred CEEEEECCCCC---HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCCh
Confidence 57899995421 123444444332234689999999984322222233333322 35799999999
No 80
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.21 E-value=0.011 Score=60.79 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=86.4
Q ss_pred CccEEEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceE-EEcCCCCCCchh-----hHhhhhccCCCCCCeEEecccC
Q 026711 47 GLDFYFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFV-INTSELGEDDPL-----KQNATWLFPSLKVPWYTTKASK 118 (234)
Q Consensus 47 ~~~~~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfv-l~~GD~~~~d~~-----~~~~~~~~~~l~~P~~~v~GNH 118 (234)
...++++.+.| |+.+ ....+...+++..+ .+|+.+ +..||.-...+. .+...+.+..+.. -+.++|||
T Consensus 658 ~~~l~Il~~nD~Hg~l~--g~~r~~~~i~~~r~-~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg~-d~~~~GNH 733 (1163)
T PRK09419 658 NWELTILHTNDFHGHLD--GAAKRVTKIKEVKE-ENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMGY-DASTFGNH 733 (1163)
T ss_pred ceEEEEEEEeecccCCC--CHHHHHHHHHHHHh-hCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcCC-CEEEeccc
Confidence 45699999999 6532 33456666665543 456765 559997221221 1112222444443 35699999
Q ss_pred CCcccC-----------------------c--e--EE----------EeCC------CCCceEEEEEeCCCCcCC-CCC-
Q 026711 119 EKEVGC-----------------------F--Q--EQ----------IRLP------HGEALDIIGVNTGSLQGK-IPT- 153 (234)
Q Consensus 119 D~~~g~-----------------------~--~--~~----------~~~P------~~~~~~~i~lDT~~~~~~-~~~- 153 (234)
|+..|. | . .- +.-| .|-.+-||++-|...... ...
T Consensus 734 Efd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~ 813 (1163)
T PRK09419 734 EFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGN 813 (1163)
T ss_pred ccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCC
Confidence 943221 1 0 00 0001 234567788744321110 011
Q ss_pred --CCCCCcHHHHHHHHHHHHHh-ccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 154 --ALPSASGDLLLNWLKSALEA-TNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 154 --~~~~~~~~~ql~wL~~~L~~-~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
+-...+..+..+-.-++|++ ...+-+|++.|-......... ..+ ...|.++. +||+++.+|+|-.
T Consensus 814 ~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~~-~~~-------~~~lA~~v~gIDvIigGHsH~~ 882 (1163)
T PRK09419 814 VKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTG-EIT-------GLELAKKVKGVDAIISAHTHTL 882 (1163)
T ss_pred cCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccccc-ccH-------HHHHHHhCCCCCEEEeCCCCcc
Confidence 11122333334333444663 345788889998765432211 111 22355555 7999999999953
No 81
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.20 E-value=0.00043 Score=59.75 Aligned_cols=64 Identities=14% Similarity=-0.001 Sum_probs=40.1
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
+.+++|| |.. ..+.+.++++.-....|-++++||+....+.-.+..+.+..++.....+.||||
T Consensus 2 ~~YvIGDIHGc~-----daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD 67 (279)
T TIGR00668 2 ATYLIGDLHGCY-----DELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHD 67 (279)
T ss_pred cEEEEEcccCCH-----HHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhH
Confidence 3589999 643 355566655532345789999999854333223333333444445679999999
No 82
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.18 E-value=0.032 Score=54.88 Aligned_cols=58 Identities=7% Similarity=-0.028 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
+-.+-.-.+|++...+-+|++.|-.+-..... ... .++.. .+++. +||+++.+|||-.
T Consensus 231 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~-~~~---ena~~---~l~~v~gID~IlgGHsH~~ 289 (780)
T PRK09418 231 ETAKKMVPKMKAEGADVIVALAHSGVDKSGYN-VGM---ENASY---YLTEVPGVDAVLMGHSHTE 289 (780)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccccc-ccc---hhhhH---HHhcCCCCCEEEECCCCCc
Confidence 33433344466556778888999776543211 111 12211 24666 8999999999854
No 83
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.14 E-value=0.012 Score=55.74 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCCCchh-----hHhhhhccCCCCCCeEEecccCCCcccC-----ceEE-------
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGEDDPL-----KQNATWLFPSLKVPWYTTKASKEKEVGC-----FQEQ------- 128 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~-----~~~~~~~~~~l~~P~~~v~GNHD~~~g~-----~~~~------- 128 (234)
..++..+++..++.+..+++..||.-...+. .+...+.+..++. =+.++||||+..|. +.+.
T Consensus 35 a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g~-Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~ 113 (550)
T TIGR01530 35 AALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAAGF-DFFTLGNHEFDAGNEGLKEFLEPLEIPVLS 113 (550)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhccCC-CEEEeccccccCCHHHHHHHHHhCCCCEEE
Confidence 4566666666444556789999997221211 1111222433332 27889999954432 0000
Q ss_pred -------------EeCC------CCCceEEEEEeCCCCcC--CCCC-CCCCCcHHHHHHHHHHHHHhccCCeEEEEeecc
Q 026711 129 -------------IRLP------HGEALDIIGVNTGSLQG--KIPT-ALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (234)
Q Consensus 129 -------------~~~P------~~~~~~~i~lDT~~~~~--~~~~-~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP 186 (234)
+.-| .|-.+-||++.|..... .... +-...+..+-.+-.-++|++...+-+|++.|-.
T Consensus 114 aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g 193 (550)
T TIGR01530 114 ANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHAG 193 (550)
T ss_pred EeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0012 34567888996532111 1111 001122333333334556654457788888854
Q ss_pred ccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 187 LVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
.. .+. .+.++. +||+++.+|||-.
T Consensus 194 ~~------~d~----------~la~~~~~iD~IigGHsH~~ 218 (550)
T TIGR01530 194 FE------KNC----------EIAQKINDIDVIVSGDSHYL 218 (550)
T ss_pred cH------HHH----------HHHhcCCCCCEEEeCCCCcc
Confidence 21 111 244444 8999999999974
No 84
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.014 Score=54.80 Aligned_cols=170 Identities=11% Similarity=0.034 Sum_probs=86.0
Q ss_pred CCCccEEEEEEeC--CCCC----------ChhHHHHHHHHHHHHHhCCCceEEEcCCCCCC------chhhHhhhhccCC
Q 026711 45 RKGLDFYFISVTG--GFRP----------LEQQTLLLKQMEDVAKSYDARFVINTSELGED------DPLKQNATWLFPS 106 (234)
Q Consensus 45 ~~~~~~~F~~~gd--G~~~----------~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~------d~~~~~~~~~~~~ 106 (234)
....+++++-+.| |+.. ......++..+.+.-++.+..++|..||+-.. ....+...+.+..
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~ 101 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNA 101 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhh
Confidence 3356789999988 5432 01223455555555445567889999997111 1111111222333
Q ss_pred CCCCeEEecccCCCcccC-----ceEE-------------------EeCC------CCCceEEEEEeCCCCcCCCCC-C-
Q 026711 107 LKVPWYTTKASKEKEVGC-----FQEQ-------------------IRLP------HGEALDIIGVNTGSLQGKIPT-A- 154 (234)
Q Consensus 107 l~~P~~~v~GNHD~~~g~-----~~~~-------------------~~~P------~~~~~~~i~lDT~~~~~~~~~-~- 154 (234)
++. =+.++||||++.|. +.+. +.-| .+-.+.+|++.+.- ...+.. +
T Consensus 102 m~y-Da~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~-~~~~~~~~~ 179 (517)
T COG0737 102 LGY-DAMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPT-IPTWEKPNA 179 (517)
T ss_pred cCC-cEEeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCc-ccccccccc
Confidence 222 27889999965443 1111 1112 23567788886431 111111 1
Q ss_pred ---CCCCcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHH-HHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 155 ---LPSASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLE-AKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 155 ---~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~-~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
-...+..+..+-.-.+|++...+-+|+..|-+............ ..... . .++|+++.+|+|
T Consensus 180 ~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~~~~~~-------~-~~iD~i~~GH~H 245 (517)
T COG0737 180 IEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPGDVDVA-------V-PGIDLIIGGHSH 245 (517)
T ss_pred cCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccccccccccc-------c-cCcceEeccCCc
Confidence 01222333333333334443357888889988876543221111 00111 1 459999999999
No 85
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.08 E-value=0.00067 Score=56.53 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=38.0
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
+++++|| |.. ..+.+.+++.....+.|-++++||+-...+.=.+..+.+.. ..++.+.||||
T Consensus 18 ri~vigDIHG~~-----~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~--~~~~~v~GNHE 81 (218)
T PRK11439 18 HIWLVGDIHGCF-----EQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE--HWVRAVRGNHE 81 (218)
T ss_pred eEEEEEcccCCH-----HHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc--CCceEeeCchH
Confidence 7899999 533 34555555543233678999999984333322223333322 23578999999
No 86
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.86 E-value=0.0015 Score=54.80 Aligned_cols=57 Identities=16% Similarity=0.308 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEcCCCCCC--chhhHhhhhc---cCCCCC-CeEEecccCCC
Q 026711 64 QQTLLLKQMEDVAKSYDARFVINTSELGED--DPLKQNATWL---FPSLKV-PWYTTKASKEK 120 (234)
Q Consensus 64 ~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~--d~~~~~~~~~---~~~l~~-P~~~v~GNHD~ 120 (234)
+...+.+.+.+.....+|+-+|++||+-.+ ...|+++.+. .+.+.. -+..+.||||.
T Consensus 47 ~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~evi~i~GNHD~ 109 (235)
T COG1407 47 QTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDEREVIIIRGNHDN 109 (235)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccCcEEEEeccCCC
Confidence 334566777777888999999999998321 2223433222 222322 49999999993
No 87
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.85 E-value=0.00087 Score=55.55 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=36.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCC---CCCeEEecccCCC
Q 026711 53 ISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL---KVPWYTTKASKEK 120 (234)
Q Consensus 53 ~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l---~~P~~~v~GNHD~ 120 (234)
+++||-+. .-..+.+.+++.. ..++|.+|++||.....+...+..+.+..+ ..+++.+.||||.
T Consensus 1 ~~igDiHg---~~~~l~~~l~~~~-~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 1 YVIGDIHG---CLDDLLRLLEKIG-FPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHED 67 (225)
T ss_pred CEEeCCCC---CHHHHHHHHHHhC-CCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchh
Confidence 47899332 1134545554432 257899999999843222222222221222 4578999999994
No 88
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.84 E-value=0.0011 Score=55.50 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=36.2
Q ss_pred EEEEeC--CCCCChhHHHHHHHHHHHHHh-------CCCceEEEcCCCCCCchhhHhhhhccCCC--CCCeEEecccCCC
Q 026711 52 FISVTG--GFRPLEQQTLLLKQMEDVAKS-------YDARFVINTSELGEDDPLKQNATWLFPSL--KVPWYTTKASKEK 120 (234)
Q Consensus 52 F~~~gd--G~~~~~~q~~~~~~i~~~~~~-------~~~dfvl~~GD~~~~d~~~~~~~~~~~~l--~~P~~~v~GNHD~ 120 (234)
|+++|| |.. ..+.+.++++... ...|.+|++||+-...+.=....+.+..+ +-.++.+.||||.
T Consensus 1 ~~vIGDIHG~~-----~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~ 75 (222)
T cd07413 1 YDFIGDIHGHA-----EKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEF 75 (222)
T ss_pred CEEEEeccCCH-----HHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcH
Confidence 578999 543 3455555544211 14689999999843333212222322222 2357899999993
No 89
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=96.78 E-value=0.001 Score=55.12 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=25.5
Q ss_pred CCCceEEEcCCCCCCchhhHhhhhc-------cCCCCCCeEEecccCC
Q 026711 79 YDARFVINTSELGEDDPLKQNATWL-------FPSLKVPWYTTKASKE 119 (234)
Q Consensus 79 ~~~dfvl~~GD~~~~d~~~~~~~~~-------~~~l~~P~~~v~GNHD 119 (234)
.+.|.++++||+-...+.-.+..+. ......+++.++||||
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE 78 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHE 78 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCc
Confidence 4689999999983222211111111 2234578999999999
No 90
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.76 E-value=0.0025 Score=55.47 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=35.0
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHh-----CCCceEEEcCCCCCCchhhHhhhhccCCC-----CCCeEEecccC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKS-----YDARFVINTSELGEDDPLKQNATWLFPSL-----KVPWYTTKASK 118 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~-----~~~dfvl~~GD~~~~d~~~~~~~~~~~~l-----~~P~~~v~GNH 118 (234)
+++++|| |.. ..+.+.+..+... ...+.+|++||.....+.-....+.+..+ ...++.+.|||
T Consensus 3 ~iyaIGDIHG~~-----d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNH 77 (304)
T cd07421 3 VVICVGDIHGYI-----SKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNH 77 (304)
T ss_pred eEEEEEeccCCH-----HHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCC
Confidence 6889999 543 2233333333221 23568999999843333222232221111 12578999999
Q ss_pred C
Q 026711 119 E 119 (234)
Q Consensus 119 D 119 (234)
|
T Consensus 78 E 78 (304)
T cd07421 78 D 78 (304)
T ss_pred h
Confidence 9
No 91
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.74 E-value=0.051 Score=52.36 Aligned_cols=58 Identities=9% Similarity=-0.027 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
+-.+-.-.+|++...+-+|++.|-..-........++ .. ..+++. +||+++.+|||-.
T Consensus 182 eaa~~~v~~Lr~~gaDvII~LsH~G~~~d~~~~~~en---~~----~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 182 DTARKYVPEMKAKGADIIVALAHSGISADPYQPGAEN---SA----YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcCCCccccccch---HH----HHHhcCCCCCEEEcCCCCcc
Confidence 3333334457665667888899977654311111111 11 234565 8999999999863
No 92
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.74 E-value=0.002 Score=53.69 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=37.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
+++++||-+. .-..+.+++.+..-..+.|.++++||+....+.-.+..+.+.. -.++.+.||||.
T Consensus 16 ri~visDiHg---~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~ 80 (218)
T PRK09968 16 HIWVVGDIHG---EYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEA 80 (218)
T ss_pred eEEEEEeccC---CHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHH
Confidence 8899999442 1133444444332135679999999984332221222223222 246899999993
No 93
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.70 E-value=0.0015 Score=55.41 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=37.2
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHh--------CCCceEEEcCCCCCCchhhHhhhhccC--CCCCCeEEecccC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKS--------YDARFVINTSELGEDDPLKQNATWLFP--SLKVPWYTTKASK 118 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~--------~~~dfvl~~GD~~~~d~~~~~~~~~~~--~l~~P~~~v~GNH 118 (234)
+++++|| |.. ..+.+++++..-. .+.|.++++||+-+..+.=.+..+.+. ....+++++.|||
T Consensus 2 ~~~vIGDIHG~~-----~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNH 76 (245)
T PRK13625 2 KYDIIGDIHGCY-----QEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNH 76 (245)
T ss_pred ceEEEEECccCH-----HHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCcc
Confidence 5789999 643 3455555543211 234789999998433322122222211 1234789999999
Q ss_pred C
Q 026711 119 E 119 (234)
Q Consensus 119 D 119 (234)
|
T Consensus 77 E 77 (245)
T PRK13625 77 C 77 (245)
T ss_pred H
Confidence 9
No 94
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=96.65 E-value=0.0042 Score=48.87 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=40.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH-HHhCCCceEEEcCCC-CCC--chhhHhhhhccCCCCCCeEEecccCC
Q 026711 53 ISVTGGFRPLEQQTLLLKQMEDV-AKSYDARFVINTSEL-GED--DPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 53 ~~~gdG~~~~~~q~~~~~~i~~~-~~~~~~dfvl~~GD~-~~~--d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
+++||-.. .-..+.+.++++ .+..+.|++|.+||. +.. +..|+..+.--....+|.|++-|||+
T Consensus 1 LV~G~~~G---~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNG---RLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCc---cHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC
Confidence 36788221 114566666654 345789999999997 322 22343333334567899999999998
No 95
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.65 E-value=0.0041 Score=52.51 Aligned_cols=41 Identities=7% Similarity=0.147 Sum_probs=25.9
Q ss_pred CCceEEEcCCCCCCch----------------hhHhhhhccCCC--CCCeEEecccCCC
Q 026711 80 DARFVINTSELGEDDP----------------LKQNATWLFPSL--KVPWYTTKASKEK 120 (234)
Q Consensus 80 ~~dfvl~~GD~~~~d~----------------~~~~~~~~~~~l--~~P~~~v~GNHD~ 120 (234)
++|.|+++||+.+... .++...+.+..+ .+|++.+|||||.
T Consensus 35 ~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~v~~ipGNHD~ 93 (243)
T cd07386 35 RVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSHIKIIIIPGNHDA 93 (243)
T ss_pred CccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccCCeEEEeCCCCCc
Confidence 5799999999842100 011112223444 5899999999994
No 96
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.52 E-value=0.0023 Score=53.80 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=37.7
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHH---Hh------CCCceEEEcCCCCCCchhhHhhhhccCCC--CCCeEEeccc
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVA---KS------YDARFVINTSELGEDDPLKQNATWLFPSL--KVPWYTTKAS 117 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~---~~------~~~dfvl~~GD~~~~d~~~~~~~~~~~~l--~~P~~~v~GN 117 (234)
++.++|| |.. ..+.+.+++.. +. .+.|.++++||+-...+.-.+..+.+..+ +..++.+.||
T Consensus 2 ~i~vigDIHG~~-----~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GN 76 (234)
T cd07423 2 PFDIIGDVHGCY-----DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGN 76 (234)
T ss_pred CeEEEEECCCCH-----HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECC
Confidence 5789999 543 34555555431 11 13689999999843333223333332222 2357899999
Q ss_pred CCC
Q 026711 118 KEK 120 (234)
Q Consensus 118 HD~ 120 (234)
||.
T Consensus 77 HE~ 79 (234)
T cd07423 77 HDN 79 (234)
T ss_pred cHH
Confidence 993
No 97
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.47 E-value=0.12 Score=50.00 Aligned_cols=60 Identities=7% Similarity=-0.069 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
..+-.+-.-.+|++...+-+|+..|-.+-........ + +.. ..+++. +||+++.+|||-.
T Consensus 203 ~ve~a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~a-e---n~~---~~l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 203 ITETARKYVPEMKEKGADIVVAIPHSGISADPYKAMA-E---NSV---YYLSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCCcCCCCccccc-c---chh---HHHhcCCCCCEEEeCCCCcc
Confidence 3344444444577656678888889776432111010 1 111 124555 8999999999853
No 98
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=95.77 E-value=0.39 Score=42.27 Aligned_cols=48 Identities=15% Similarity=-0.103 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 164 LNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 164 l~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
.+-.-++|++...+-+|+..|-.-+. .+. .|.++. +||+++.+|||-.
T Consensus 196 ~~~~v~~Lr~~gvD~II~LsH~g~~~-----~d~----------~lA~~v~gIDvIigGHsH~~ 244 (313)
T cd08162 196 IQPSIDALTAQGINKIILLSHLQQIS-----IEQ----------ALAALLSGVDVIIAGGSNTL 244 (313)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccc-----hHH----------HHHhcCCCCCEEEeCCCCcc
Confidence 33334456554557788888963111 111 255565 8999999999964
No 99
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.70 E-value=0.34 Score=41.02 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=43.1
Q ss_pred EEEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc--hhhHhhhhccCCCCCCeEEecccCCCc
Q 026711 50 FYFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD--PLKQNATWLFPSLKVPWYTTKASKEKE 121 (234)
Q Consensus 50 ~~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d--~~~~~~~~~~~~l~~P~~~v~GNHD~~ 121 (234)
.|++.+|| |.. ..+.+.+.+-....+.++||||.-|.|+... --|+.+.++ .+..+. +.++|||=|.
T Consensus 1 mriLfiGDvvGk~---Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l-~~~G~d-viT~GNH~wd 71 (266)
T COG1692 1 MRILFIGDVVGKP---GRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKEL-LEAGAD-VITLGNHTWD 71 (266)
T ss_pred CeEEEEecccCcc---hHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHH-HHhCCC-EEeccccccc
Confidence 37889999 654 3345667777777779999999999994321 122222222 222222 6789999864
No 100
>PRK04036 DNA polymerase II small subunit; Validated
Probab=95.57 E-value=0.034 Score=52.22 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCccEEEEEEeCCCCCCh-hHHHHHHHHHHHHH---------hCCCceEEEcCCCCCC---chh-------------hHh
Q 026711 46 KGLDFYFISVTGGFRPLE-QQTLLLKQMEDVAK---------SYDARFVINTSELGED---DPL-------------KQN 99 (234)
Q Consensus 46 ~~~~~~F~~~gdG~~~~~-~q~~~~~~i~~~~~---------~~~~dfvl~~GD~~~~---d~~-------------~~~ 99 (234)
...+.+++++.|=+.|.. ........+.++.+ ..+++.+|++||.-.. .+. ...
T Consensus 240 ~~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~ 319 (504)
T PRK04036 240 KDEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEA 319 (504)
T ss_pred CCCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHH
Confidence 345678999999222211 11222333433433 5679999999997311 000 011
Q ss_pred hhhccCCC--CCCeEEecccCCC
Q 026711 100 ATWLFPSL--KVPWYTTKASKEK 120 (234)
Q Consensus 100 ~~~~~~~l--~~P~~~v~GNHD~ 120 (234)
..+.+..+ .+|++.+|||||.
T Consensus 320 l~~~L~~L~~~i~V~~ipGNHD~ 342 (504)
T PRK04036 320 AAEYLKQIPEDIKIIISPGNHDA 342 (504)
T ss_pred HHHHHHhhhcCCeEEEecCCCcc
Confidence 11123333 5899999999993
No 101
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.51 E-value=0.41 Score=47.46 Aligned_cols=58 Identities=12% Similarity=0.001 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh-CccEEEEecCcCC
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF-GVVRSFFIFSIPG 226 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~-~Vd~vf~~~~~~~ 226 (234)
+-.+-.-.+|++...+-+|++.|--+......... + +.. ..| .+. +||+++.+|||-.
T Consensus 296 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~-E---n~~--~~L-A~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 296 EAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGE-E---NVG--YQI-ASLSGVDAVVTGHSHAE 354 (814)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccccccccc-c---chh--hHH-hcCCCCCEEEECCCCCc
Confidence 33433344466555678888889776442111011 1 111 122 344 8999999999863
No 102
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.46 E-value=0.044 Score=51.03 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=29.6
Q ss_pred CccEEEEEEeC---CCCCC------hhHHHHHHHHHHHHHhCCCceEEEcCCC
Q 026711 47 GLDFYFISVTG---GFRPL------EQQTLLLKQMEDVAKSYDARFVINTSEL 90 (234)
Q Consensus 47 ~~~~~F~~~gd---G~~~~------~~q~~~~~~i~~~~~~~~~dfvl~~GD~ 90 (234)
+..++.++..| |+... +.-..+.+.+. ++++.++|+||..||+
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~-iA~e~~VDmiLlGGDL 62 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILE-IAQENDVDMILLGGDL 62 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHH-HHHhcCCcEEEecCcc
Confidence 56789999998 54322 22233444443 6777899999999996
No 103
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.42 Score=45.17 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh--CccE-EEEecCcCC
Q 026711 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF--GVVR-SFFIFSIPG 226 (234)
Q Consensus 161 ~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~--~Vd~-vf~~~~~~~ 226 (234)
-.|.+|-.+.++.-.-+-+|+.+|-|+-... ... . ++..+.++ ++++ ||=+|||=.
T Consensus 211 i~~~~~~~~m~~~~~idlii~lgH~~~~~~~----e~~---~---~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 211 ITQSEWEQDMVNTTDIDLIIALGHSPVRDDD----EWK---S---LHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred HhccchHHHHhhccCccEEEEecccccccch----hhh---h---HHHHHhhhCCCCceEEECchhhhh
Confidence 3466888888887666788889998874421 111 1 33344444 6888 888888743
No 104
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.03 E-value=0.019 Score=50.77 Aligned_cols=64 Identities=5% Similarity=-0.093 Sum_probs=36.6
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCC----CCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPS----LKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~----l~~P~~~v~GNHD 119 (234)
+++++|| |.. ..+.+.+.+.....+.+..|++||..+..+.=.+...++-. ..-.++.+.||||
T Consensus 52 ~~~vvGDiHG~~-----~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE 121 (321)
T cd07420 52 QVTICGDLHGKL-----DDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHE 121 (321)
T ss_pred CeEEEEeCCCCH-----HHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchh
Confidence 6789999 643 35666665432111236799999984333221222222111 2334789999999
No 105
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=94.61 E-value=0.37 Score=39.86 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=26.1
Q ss_pred CceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCC-eEEEEe
Q 026711 135 EALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQ-WCIVVG 183 (234)
Q Consensus 135 ~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~-~~IV~~ 183 (234)
..+.+++|||-.+-+.|.. ...+.++|.+.|+..+.+ .+|+.|
T Consensus 156 ~~~~~~~lD~R~~Rd~W~~------~~~er~~l~~~~~~~~~~~vv~lSG 199 (228)
T cd07389 156 DLVDLILLDTRTYRDSWDG------YPAERERLLDLLAKRKIKNVVFLSG 199 (228)
T ss_pred CcceEEEEecccccccccc------cHHHHHHHHHHHHHhCCCCeEEEec
Confidence 4459999999876654432 234556666666666555 444444
No 106
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=94.59 E-value=0.12 Score=41.62 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=38.2
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCC-CCCCeEEecccCC
Q 026711 51 YFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPS-LKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~-l~~P~~~v~GNHD 119 (234)
++++++|.+.+.. ..+...+.....++|+||++||....... ..++. +..+++.|-||.|
T Consensus 3 ~ilviSDtH~~~~----~~~~~~~~~~~~~~d~vih~GD~~~~~~~-----~~l~~~~~~~i~~V~GN~D 63 (172)
T COG0622 3 KILVISDTHGPLR----AIEKALKIFNLEKVDAVIHAGDSTSPFTL-----DALEGGLAAKLIAVRGNCD 63 (172)
T ss_pred EEEEEeccCCChh----hhhHHHHHhhhcCCCEEEECCCcCCccch-----HHhhcccccceEEEEccCC
Confidence 6889999665322 12222233445799999999998532111 11233 5778899999999
No 107
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.54 E-value=0.047 Score=43.03 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHhCCC-ceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCC
Q 026711 75 VAKSYDA-RFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEK 120 (234)
Q Consensus 75 ~~~~~~~-dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~ 120 (234)
..+..+| |.+-++||++..-..-..+.+++++|+.-...|+||||.
T Consensus 39 ~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GNhDk 85 (186)
T COG4186 39 WNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGNHDK 85 (186)
T ss_pred HHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCCCCC
Confidence 4444444 578999999522111122334478888888999999993
No 108
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=94.29 E-value=0.043 Score=49.46 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=36.6
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccC----CCCCCeEEecccCCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFP----SLKVPWYTTKASKEK 120 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~----~l~~P~~~v~GNHD~ 120 (234)
+++++|| |.. ..+.+.+........-+.+|++||..+..+.-.+....+. ...--++.+.||||.
T Consensus 67 ~i~VvGDIHG~~-----~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~ 137 (377)
T cd07418 67 EVVVVGDVHGQL-----HDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHES 137 (377)
T ss_pred CEEEEEecCCCH-----HHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeeccc
Confidence 6899999 643 3455555533211122459999998433332222222211 123347999999993
No 109
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=94.05 E-value=0.043 Score=48.39 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=36.2
Q ss_pred EEEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCC----CCCeEEecccCC
Q 026711 50 FYFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL----KVPWYTTKASKE 119 (234)
Q Consensus 50 ~~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l----~~P~~~v~GNHD 119 (234)
-+.+++|| |.. ..+.+.+....-..+-|-++++||.-+..+.-.+....+-.+ .--++.+.||||
T Consensus 60 ~~~~VvGDIHG~~-----~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE 130 (316)
T cd07417 60 EKITVCGDTHGQF-----YDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHE 130 (316)
T ss_pred ceeEEeecccCCH-----HHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccc
Confidence 36899999 643 345555543321123357999999843333222222221111 234688999999
No 110
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=93.34 E-value=0.096 Score=46.00 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=36.5
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCC----CCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL----KVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l----~~P~~~v~GNHD 119 (234)
..+++|| |.. ..+.+.+.. ......+-++++||.-...+.-.+....+..+ .--++.+.||||
T Consensus 44 ~i~ViGDIHG~~-----~dL~~l~~~-~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE 112 (305)
T cd07416 44 PVTVCGDIHGQF-----YDLLKLFEV-GGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHE 112 (305)
T ss_pred CEEEEEeCCCCH-----HHHHHHHHh-cCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCc
Confidence 5789999 543 344444442 22234578999999843333222332221122 235789999999
No 111
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=0.09 Score=44.21 Aligned_cols=26 Identities=8% Similarity=-0.132 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhCccEEEEecCcCCe
Q 026711 202 IYEPLHHIFMKFGVVRSFFIFSIPGK 227 (234)
Q Consensus 202 ~~~~l~~ll~k~~Vd~vf~~~~~~~~ 227 (234)
+.+.....+++++||.++|+|-|-..
T Consensus 175 ~~~~v~~~~~~~~vd~vI~GH~Hr~a 200 (237)
T COG2908 175 NPAAVADEARRHGVDGVIHGHTHRPA 200 (237)
T ss_pred hHHHHHHHHHHcCCCEEEecCcccHh
Confidence 45567778999999999997766443
No 112
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=92.92 E-value=0.12 Score=44.67 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=36.7
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc---c-CCCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---F-PSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~---~-~~l~~P~~~v~GNHD 119 (234)
..+++|| |.. ..+.+.+.... ....+-++++||.-...+.-.+.... + ....-.++.+.||||
T Consensus 29 ~i~vvGDiHG~~-----~~l~~ll~~~~-~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE 97 (271)
T smart00156 29 PVTVCGDIHGQF-----DDLLRLFDLNG-PPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHE 97 (271)
T ss_pred CEEEEEeCcCCH-----HHHHHHHHHcC-CCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 5789999 543 34555544332 34567899999984333322222222 1 122345799999999
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=92.02 E-value=0.19 Score=44.41 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=36.1
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCC----CCCeEEecccCCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL----KVPWYTTKASKEK 120 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l----~~P~~~v~GNHD~ 120 (234)
.++++|| |.. ..+.+.+.. ......+-.|++||.-...+...+...++..+ .-.++.+.||||.
T Consensus 60 ~i~vvGDIHG~~-----~dL~~l~~~-~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~ 129 (320)
T PTZ00480 60 PLKICGDVHGQY-----FDLLRLFEY-GGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 129 (320)
T ss_pred CeEEEeecccCH-----HHHHHHHHh-cCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccch
Confidence 5889999 533 344444443 22234567899999843333222332221122 2357999999993
No 114
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=91.63 E-value=3 Score=35.58 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=32.9
Q ss_pred EEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCch--hhHhhhhccCCCCCCeEEecccCCCcc
Q 026711 53 ISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDP--LKQNATWLFPSLKVPWYTTKASKEKEV 122 (234)
Q Consensus 53 ~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~--~~~~~~~~~~~l~~P~~~v~GNHD~~~ 122 (234)
+.+|| |.. ....+.+.+.+..++.++||||.-|.|..... ..+.+.++ ..+.+. ..+.|||=|..
T Consensus 1 LfiGDIvG~~---Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L-~~~GvD-viT~GNH~wdk 69 (253)
T PF13277_consen 1 LFIGDIVGKP---GRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEEL-FKAGVD-VITMGNHIWDK 69 (253)
T ss_dssp EEE-EBBCHH---HHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHH-HHHT-S-EEE--TTTTSS
T ss_pred CeEEecCCHH---HHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHH-HhcCCC-EEecCcccccC
Confidence 35688 533 44567777777777889999999999943211 11222222 122332 57899998653
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=91.58 E-value=0.12 Score=45.09 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=35.1
Q ss_pred EEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc---cC-CCCCCeEEecccCC
Q 026711 52 FISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---FP-SLKVPWYTTKASKE 119 (234)
Q Consensus 52 F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~---~~-~l~~P~~~v~GNHD 119 (234)
.+++|| |.. ..+.+.+++.. ....+-++++||.-...+.-.+.... ++ ...-.++.+.||||
T Consensus 54 ~~ViGDIHG~~-----~~L~~l~~~~~-~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 121 (294)
T PTZ00244 54 VRVCGDTHGQY-----YDLLRIFEKCG-FPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHE 121 (294)
T ss_pred ceeeccCCCCH-----HHHHHHHHHcC-CCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccc
Confidence 678999 543 34555554332 22345688999984333322233222 11 12345899999999
No 116
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=91.49 E-value=0.18 Score=43.84 Aligned_cols=63 Identities=8% Similarity=-0.097 Sum_probs=36.1
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc---cC-CCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---FP-SLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~---~~-~l~~P~~~v~GNHD 119 (234)
.++++|| |.. ..+.+.+... .....+-+|++||.-...+.-.+.... +. ...-.++.+.||||
T Consensus 43 ~i~vvGDIHG~~-----~dL~~ll~~~-~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 111 (285)
T cd07415 43 PVTVCGDIHGQF-----YDLLELFRVG-GDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHE 111 (285)
T ss_pred CEEEEEeCCCCH-----HHHHHHHHHc-CCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccc
Confidence 4889999 533 3444444433 223456799999974333322222222 11 22446899999999
No 117
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=91.07 E-value=0.21 Score=43.61 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=35.6
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCC----CCCeEEecccCCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL----KVPWYTTKASKEK 120 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l----~~P~~~v~GNHD~ 120 (234)
..+++|| |.. ..+.+.+... .....+-+|++||.-...+.-.+....+..+ .-.++.+.||||.
T Consensus 51 ~i~viGDIHG~~-----~~L~~l~~~~-~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~ 120 (293)
T cd07414 51 PLKICGDIHGQY-----YDLLRLFEYG-GFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120 (293)
T ss_pred ceEEEEecCCCH-----HHHHHHHHhc-CCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccch
Confidence 5789999 543 3455555433 2234567899999843222212222221111 2347999999993
No 118
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=90.66 E-value=0.29 Score=43.07 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCccEEEEecC
Q 026711 203 YEPLHHIFMKFGVVRSFFIFS 223 (234)
Q Consensus 203 ~~~l~~ll~k~~Vd~vf~~~~ 223 (234)
.+.+...++++++++++=+|.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 345777899999999887775
No 119
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=89.78 E-value=0.38 Score=42.22 Aligned_cols=63 Identities=8% Similarity=-0.109 Sum_probs=35.1
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCC----CCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSL----KVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l----~~P~~~v~GNHD 119 (234)
..+++|| |.. ..+.+.+.... ....+-++++||.-...+.-.+....+..+ .--++.+.||||
T Consensus 44 ~i~vvGDIHG~~-----~~L~~l~~~~~-~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 112 (303)
T PTZ00239 44 PVNVCGDIHGQF-----YDLQALFKEGG-DIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHE 112 (303)
T ss_pred CEEEEEeCCCCH-----HHHHHHHHhcC-CCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccc
Confidence 4788999 543 34444544322 234567999999843332222222221111 234799999999
No 120
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=89.20 E-value=4.6 Score=36.27 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCCceEEEcCCC-C---CCc-------hhhHh---hhhc---cCCCCCCeEEecccCC
Q 026711 79 YDARFVINTSEL-G---EDD-------PLKQN---ATWL---FPSLKVPWYTTKASKE 119 (234)
Q Consensus 79 ~~~dfvl~~GD~-~---~~d-------~~~~~---~~~~---~~~l~~P~~~v~GNHD 119 (234)
.++|++|..||. + +.| +.+++ ++.. -....+|.++|=||||
T Consensus 29 tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHE 86 (456)
T KOG2863|consen 29 TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHE 86 (456)
T ss_pred CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchH
Confidence 589999999996 1 111 12222 2222 2345788899999999
No 121
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=88.25 E-value=14 Score=31.03 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcc--CCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 163 LLNWLKSALEATN--GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 163 ql~wL~~~L~~~~--~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
..+.+.+++++.+ .+.+||.+|.-.-- ....... ..++..-+-..|+|+++..|+|
T Consensus 169 ~~~~i~~~i~~~r~~~D~vIv~~HwG~e~--~~~p~~~----q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 169 GIERIKEDIREARKKADVVIVSLHWGIEY--ENYPTPE----QRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEeccCCCC--CCCCCHH----HHHHHHHHHHcCCCEEEeCCCC
Confidence 3466777777665 46899999974221 1111222 2223334455899999998886
No 122
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=87.00 E-value=10 Score=31.60 Aligned_cols=43 Identities=12% Similarity=-0.075 Sum_probs=25.7
Q ss_pred CCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 176 GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 176 ~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
.+.+||..|-..-.... ...+ ..++...+...|||+++..|+|
T Consensus 175 ~D~vIv~~H~G~e~~~~--p~~~----~~~la~~l~~~G~D~IiG~H~H 217 (239)
T cd07381 175 ADIVIVSLHWGVEYSYY--PTPE----QRELARALIDAGADLVIGHHPH 217 (239)
T ss_pred CCEEEEEecCcccCCCC--CCHH----HHHHHHHHHHCCCCEEEcCCCC
Confidence 67889999964422111 1122 2233334455799999998887
No 123
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=4 Score=37.65 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=42.9
Q ss_pred EEEEEEeC--CCCCChhHHHHHHHHHHHHHh-CCCceEEEcCCC-CC--CchhhHhhhhccCCCCCCeEEecccC
Q 026711 50 FYFISVTG--GFRPLEQQTLLLKQMEDVAKS-YDARFVINTSEL-GE--DDPLKQNATWLFPSLKVPWYTTKASK 118 (234)
Q Consensus 50 ~~F~~~gd--G~~~~~~q~~~~~~i~~~~~~-~~~dfvl~~GD~-~~--~d~~~~~~~~~~~~l~~P~~~v~GNH 118 (234)
.+.++.|| |.. .++.+.+.++.+. ...|+++.+|+. +. .+.+|.....-.....+|.|+.-+|-
T Consensus 6 ~kILv~Gd~~Gr~-----~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 6 AKILVCGDVEGRF-----DELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNA 75 (528)
T ss_pred ceEEEEcCccccH-----HHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCC
Confidence 58899999 533 4567777777554 558999999997 53 23334332222567788888887776
No 124
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=79.88 E-value=7.4 Score=36.18 Aligned_cols=76 Identities=9% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCCCCccEEEEEEeCCCCCChh--HHHHHHHHHHHHH-----hCCCceEEEcCCC--------CCCch--------hhHh
Q 026711 43 SNRKGLDFYFISVTGGFRPLEQ--QTLLLKQMEDVAK-----SYDARFVINTSEL--------GEDDP--------LKQN 99 (234)
Q Consensus 43 ~~~~~~~~~F~~~gdG~~~~~~--q~~~~~~i~~~~~-----~~~~dfvl~~GD~--------~~~d~--------~~~~ 99 (234)
+...+..+..++++|-+.|... .+.+...+ ++.+ +.+...++.+||. |.++. +++.
T Consensus 219 ~~~~~e~v~v~~isDih~GSk~F~~~~f~~fi-~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~ 297 (481)
T COG1311 219 NNTGDERVYVALISDIHRGSKEFLEDEFEKFI-DWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEE 297 (481)
T ss_pred CCCCCcceEEEEEeeeecccHHHHHHHHHHHH-HHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHH
Confidence 3455677888899994443221 12222222 2221 2344789999996 11111 1222
Q ss_pred hhhccCCC--CCCeEEecccCC
Q 026711 100 ATWLFPSL--KVPWYTTKASKE 119 (234)
Q Consensus 100 ~~~~~~~l--~~P~~~v~GNHD 119 (234)
..+.+... .+.++..|||||
T Consensus 298 ~A~~L~~vp~~I~v~i~PGnhD 319 (481)
T COG1311 298 LAEFLDQVPEHIKVFIMPGNHD 319 (481)
T ss_pred HHHHHhhCCCCceEEEecCCCC
Confidence 22223332 566899999999
No 125
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=77.35 E-value=11 Score=31.40 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCC-CCchhhHhhhhccCCCCCCeEEe
Q 026711 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG-EDDPLKQNATWLFPSLKVPWYTT 114 (234)
Q Consensus 45 ~~~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~-~~d~~~~~~~~~~~~l~~P~~~v 114 (234)
+.+.++.+-++|-|..= +...+..+..+..+..+|||||..|=|. ...+ ..+.+.+....+|.+.+
T Consensus 27 AdRedi~vrVvgsgaKM--~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP--~kARE~l~~s~~Paiii 93 (277)
T COG1927 27 ADREDIEVRVVGSGAKM--DPECVEAAVTEMLEEFNPDFVIYISPNPAAPGP--KKAREILSDSDVPAIII 93 (277)
T ss_pred cccCCceEEEecccccc--ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCc--hHHHHHHhhcCCCEEEe
Confidence 44567788888887541 1123445555667789999999999993 3333 33445566667887665
No 126
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=73.36 E-value=6.2 Score=32.11 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=23.5
Q ss_pred hCCCceEEEcCCCCCC-ch-----------hhHhhh--h---ccCCC--CCCeEEecccCC
Q 026711 78 SYDARFVINTSELGED-DP-----------LKQNAT--W---LFPSL--KVPWYTTKASKE 119 (234)
Q Consensus 78 ~~~~dfvl~~GD~~~~-d~-----------~~~~~~--~---~~~~l--~~P~~~v~GNHD 119 (234)
+.+|+.+|+.|+.... .+ .....+ + .+.++ .++++.+||+||
T Consensus 29 ~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D 89 (209)
T PF04042_consen 29 ASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPND 89 (209)
T ss_dssp CTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTC
T ss_pred cCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCcc
Confidence 6789999999997311 11 011100 1 14444 589999999999
No 127
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=73.31 E-value=13 Score=31.48 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=42.3
Q ss_pred CCCccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCC-CCchhhHhhhhccCCCCCCeEEec
Q 026711 45 RKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELG-EDDPLKQNATWLFPSLKVPWYTTK 115 (234)
Q Consensus 45 ~~~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~-~~d~~~~~~~~~~~~l~~P~~~v~ 115 (234)
+.+.++...++|-|..=.. ..+.+...+..++.+|||+|.++=|+ ...| ..+.+.++..++|.+++-
T Consensus 27 AdRedI~vrv~gsGaKm~p--e~~~~~~~~~~~~~~pDf~i~isPN~a~PGP--~~ARE~l~~~~iP~IvI~ 94 (277)
T PRK00994 27 ADREDIDVRVVGSGAKMGP--EEVEEVVKKMLEEWKPDFVIVISPNPAAPGP--KKAREILKAAGIPCIVIG 94 (277)
T ss_pred hcccCceEEEeccCCCCCH--HHHHHHHHHHHHhhCCCEEEEECCCCCCCCc--hHHHHHHHhcCCCEEEEc
Confidence 3446677778888754211 22333444445678999999999994 3333 344555677788988773
No 128
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=67.67 E-value=10 Score=32.80 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=39.4
Q ss_pred CCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCC-CchhhHhhhhc-cCCCC-CCeEEecccCC
Q 026711 44 NRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE-DDPLKQNATWL-FPSLK-VPWYTTKASKE 119 (234)
Q Consensus 44 ~~~~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~-~d~~~~~~~~~-~~~l~-~P~~~v~GNHD 119 (234)
.......+|+.++|.+.-...+ ....+-|+.+++||.+. ..++|-..|.. +-++. .--++|.||||
T Consensus 56 p~~~~~~r~VcisdtH~~~~~i----------~~~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHE 124 (305)
T KOG3947|consen 56 PVGPGYARFVCISDTHELTFDI----------NDIPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHE 124 (305)
T ss_pred CCCCCceEEEEecCcccccCcc----------ccCCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeeccc
Confidence 4556778999999965421111 12366789999999854 33444333221 22222 11289999999
No 129
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=66.47 E-value=22 Score=31.02 Aligned_cols=70 Identities=6% Similarity=0.010 Sum_probs=43.1
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHHHHHHHhC--------CCceEEEcCCCCC-------C-chhhHhhhhc-------
Q 026711 47 GLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSY--------DARFVINTSELGE-------D-DPLKQNATWL------- 103 (234)
Q Consensus 47 ~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~--------~~dfvl~~GD~~~-------~-d~~~~~~~~~------- 103 (234)
+...+|+++||-.. ++..++++++++-... .|-.+|+.|+... + ...+++.|+.
T Consensus 25 ~~~~~~VilSDV~L---D~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls 101 (291)
T PTZ00235 25 DKRHNWIIMHDVYL---DSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLIS 101 (291)
T ss_pred CCceEEEEEEeecc---CCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHH
Confidence 45678999999554 3455666666552222 2888999999721 1 1123333332
Q ss_pred -cCCC--CCCeEEecccCC
Q 026711 104 -FPSL--KVPWYTTKASKE 119 (234)
Q Consensus 104 -~~~l--~~P~~~v~GNHD 119 (234)
++.+ +.-++.|||-+|
T Consensus 102 ~fp~L~~~s~fVFVPGpnD 120 (291)
T PTZ00235 102 KFKLILEHCYLIFIPGIND 120 (291)
T ss_pred hChHHHhcCeEEEECCCCC
Confidence 2222 577899999999
No 130
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=63.24 E-value=39 Score=26.81 Aligned_cols=56 Identities=16% Similarity=0.010 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 161 ~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
++.++-+.+.|++.-..-.|+..|+|.+. .. ..+++...+.+.+.|++|.+-|.|.
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~g~f~------~~----~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHHGYFD------EE----EEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCC------hh----hHHHHHHHHHHcCCCEEEEECCCCH
Confidence 35566667777765555566666777661 11 1344556778899999999999883
No 131
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=62.73 E-value=8.8 Score=32.98 Aligned_cols=68 Identities=7% Similarity=0.012 Sum_probs=37.1
Q ss_pred CCCccEEEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCce-EEEcCCCCCCchhhHhhhhccCCC----CCCeEEeccc
Q 026711 45 RKGLDFYFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARF-VINTSELGEDDPLKQNATWLFPSL----KVPWYTTKAS 117 (234)
Q Consensus 45 ~~~~~~~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~df-vl~~GD~~~~d~~~~~~~~~~~~l----~~P~~~v~GN 117 (234)
.++...-..+.|| |.. ..+.+.++ + -...||. .++.||.....+.-.+...++-++ .--+-.++||
T Consensus 55 V~~v~~pvtvcGDvHGqf-----~dl~ELfk-i-GG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGN 127 (319)
T KOG0371|consen 55 VQPVNCPVTVCGDVHGQF-----HDLIELFK-I-GGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGN 127 (319)
T ss_pred ccccccceEEecCcchhH-----HHHHHHHH-c-cCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCc
Confidence 3344455677899 533 45666663 2 2345565 799999843222111221121222 2346789999
Q ss_pred CC
Q 026711 118 KE 119 (234)
Q Consensus 118 HD 119 (234)
||
T Consensus 128 HE 129 (319)
T KOG0371|consen 128 HE 129 (319)
T ss_pred hH
Confidence 99
No 132
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=62.55 E-value=19 Score=30.86 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=11.5
Q ss_pred CCCeEEecccCC
Q 026711 108 KVPWYTTKASKE 119 (234)
Q Consensus 108 ~~P~~~v~GNHD 119 (234)
.+|+...|||||
T Consensus 94 ~i~V~imPG~~D 105 (257)
T cd07387 94 SVPVDLMPGEFD 105 (257)
T ss_pred CCeEEECCCCCC
Confidence 789999999999
No 133
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=61.25 E-value=10 Score=33.81 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=36.0
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCc-eEEEcCCCCCCchhhHhhhhcc----CCCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDAR-FVINTSELGEDDPLKQNATWLF----PSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~d-fvl~~GD~~~~d~~~~~~~~~~----~~l~~P~~~v~GNHD 119 (234)
-..++|| |.. ..+++.+..... .+|+ -.+++||.-+..+.=-+..-++ ...+-.++..-||||
T Consensus 60 PV~i~GDiHGq~-----~DLlrlf~~~g~-~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE 129 (331)
T KOG0374|consen 60 PVKIVGDIHGQF-----GDLLRLFDLLGS-FPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHE 129 (331)
T ss_pred CEEEEccCcCCH-----HHHHHHHHhcCC-CCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccc
Confidence 4567899 654 356666554331 2355 4899999854332101111111 123566899999999
No 134
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=60.99 E-value=20 Score=30.51 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=36.0
Q ss_pred CCCCccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEec
Q 026711 44 NRKGLDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTK 115 (234)
Q Consensus 44 ~~~~~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~ 115 (234)
.+.+.++.+.++|-|..=.. ..+.+...+..+..+|||+|.++=|+. -+--..+.+.+....+|.+++-
T Consensus 25 rAdRedI~vrv~gsGaKm~p--e~~e~~~~~~~~~~~pdf~I~isPN~~-~PGP~~ARE~l~~~~iP~IvI~ 93 (276)
T PF01993_consen 25 RADREDIDVRVVGSGAKMGP--EDVEEVVTKMLKEWDPDFVIVISPNAA-APGPTKAREMLSAKGIPCIVIS 93 (276)
T ss_dssp TS--SSEEEEEEEEET--SH--HHHHHHHHHHHHHH--SEEEEE-S-TT-SHHHHHHHHHHHHSSS-EEEEE
T ss_pred hhccCCceEEEeccCCCCCH--HHHHHHHHHHHHhhCCCEEEEECCCCC-CCCcHHHHHHHHhCCCCEEEEc
Confidence 34456777778887654111 223344444455679999999999953 1212344555667789988774
No 135
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.87 E-value=27 Score=30.18 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
+...++...+++++|.++|+...++.+.
T Consensus 213 ~~l~~l~~~ik~~~v~~if~e~~~~~~~ 240 (287)
T cd01137 213 KQVATLIEQVKKEKVPAVFVESTVNDRL 240 (287)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCChHH
Confidence 3456788889999999999977666544
No 136
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=54.31 E-value=16 Score=23.91 Aligned_cols=24 Identities=38% Similarity=0.420 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccc
Q 026711 11 LITQLSLCLALYVALNLGQPQKSIY 35 (234)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (234)
+++-.+||++ +++..+..|||+..
T Consensus 5 l~vialLC~a-Lva~vQ~APQYa~G 28 (65)
T PF10731_consen 5 LIVIALLCVA-LVAIVQSAPQYAPG 28 (65)
T ss_pred hhHHHHHHHH-HHHHHhcCcccCCC
Confidence 4455566766 44477889998754
No 137
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=52.71 E-value=37 Score=28.21 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=36.8
Q ss_pred CCCCeEEecccCCCcccC------ceEE-EeCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHh----c-
Q 026711 107 LKVPWYTTKASKEKEVGC------FQEQ-IRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEA----T- 174 (234)
Q Consensus 107 l~~P~~~v~GNHD~~~g~------~~~~-~~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~----~- 174 (234)
-++|+++||||.-.+... ..+. ........+++..+|=+.....+. +..-.+|.+++.+.++. .
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~----g~~l~~q~~~~~~~i~~i~~~~~ 78 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFH----GRTLQRQAEFLAEAIKYILELYK 78 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccc----cccHHHHHHHHHHHHHHHHHhhh
Confidence 378999999986622210 0000 111123457777777543222111 23334555554444432 2
Q ss_pred ----cCCeEEEEee
Q 026711 175 ----NGQWCIVVGF 184 (234)
Q Consensus 175 ----~~~~~IV~~H 184 (234)
+.+.+++++|
T Consensus 79 ~~~~~~~~vilVgH 92 (225)
T PF07819_consen 79 SNRPPPRSVILVGH 92 (225)
T ss_pred hccCCCCceEEEEE
Confidence 3357888888
No 138
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=49.85 E-value=70 Score=26.59 Aligned_cols=53 Identities=15% Similarity=-0.008 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 164 LNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 164 l~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
.+|+ ++|++ +.+.+||..|--.-.... .... ..++..-+...|||+++..|+|
T Consensus 163 ~~~i-~~lr~-~~D~vIv~~H~G~e~~~~--p~~~----~~~~A~~l~~~G~DvIiG~H~H 215 (239)
T smart00854 163 LADI-ARARK-KADVVIVSLHWGVEYQYE--PTDE----QRELAHALIDAGADVVIGHHPH 215 (239)
T ss_pred HHHH-HHHhc-cCCEEEEEecCccccCCC--CCHH----HHHHHHHHHHcCCCEEEcCCCC
Confidence 3444 33443 467899999976532211 1112 1223333444799999999887
No 139
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=49.78 E-value=52 Score=27.40 Aligned_cols=27 Identities=4% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCCceEEEcCCCCC
Q 026711 65 QTLLLKQMEDVAKSYDARFVINTSELGE 92 (234)
Q Consensus 65 q~~~~~~i~~~~~~~~~dfvl~~GD~~~ 92 (234)
..++..+++ .-++.|.+-++.+|||+.
T Consensus 79 ~~Ri~aA~~-ly~~gKV~~LLlSGDN~~ 105 (235)
T COG2949 79 TYRIDAAIA-LYKAGKVNYLLLSGDNAT 105 (235)
T ss_pred HHHHHHHHH-HHhcCCeeEEEEecCCCc
Confidence 344444444 445689999999999963
No 140
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=49.42 E-value=1.3e+02 Score=24.21 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 159 SGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 159 ~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
..+...+||.+.|...+.+.++|.=---......+.....-.+....+.+.+.+-.=.+||...|+|+++
T Consensus 104 ~~~~~~~~L~~al~~~~~~~ilVsNEvG~GiVPe~~l~R~fRD~~G~lnQ~la~~~deV~lvvaGlplkl 173 (175)
T COG2087 104 AIEAEIEALLAALSRAPGTVVLVSNEVGLGIVPEYRLGRLFRDIAGRLNQQLAALADEVYLVVAGLPLKL 173 (175)
T ss_pred hHHHHHHHHHHHHhcCCccEEEEecCccCCcCcCchhhHHHHHHHhHHHHHHHHhcCeEEEEEcCccccc
Confidence 3456678888888888776555421111111111111122233555677777877778899999999876
No 141
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=49.05 E-value=70 Score=24.16 Aligned_cols=61 Identities=5% Similarity=0.042 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccccCccc-chHHHHHhHHHHHHHHHHhCccEEEE
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHE-EQLEAKKIYEPLHHIFMKFGVVRSFF 220 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~-~~~~~~~~~~~l~~ll~k~~Vd~vf~ 220 (234)
..+-+++.+..++.....-.|+++.--++.-...- ...+..+..+.|..+...|+|++++|
T Consensus 17 ~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~v~l~vC 78 (128)
T PRK00207 17 ASSAYQFAQALLAEGHELVSVFFYQDGVLNANALTVPASDEFDLVRAWQQLAAEHGVALNVC 78 (128)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCCCCchhhhhHHHHHHHHHHhcCCEEEEe
Confidence 34556777766664333245667666555432211 11122234555666669999999999
No 142
>PRK14347 lipoate-protein ligase B; Provisional
Probab=48.95 E-value=36 Score=28.28 Aligned_cols=38 Identities=5% Similarity=0.131 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccc
Q 026711 158 ASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEE 195 (234)
Q Consensus 158 ~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~ 195 (234)
...+.|.++.++..+....+.++++=|.|+|+.|....
T Consensus 15 ~a~~~q~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~ 52 (209)
T PRK14347 15 VTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYK 52 (209)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCeeCCCCCC
Confidence 34556777776666555456788888999999887543
No 143
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.01 E-value=62 Score=25.62 Aligned_cols=56 Identities=21% Similarity=0.035 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 161 ~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
++.++-+.+.|++.-..-.|+..|||.+.... .+++...+.+.+.|++|.+-|.|.
T Consensus 56 ~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~----------~~~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 56 PEVLEKAAERLRARYPGLKIVGYHHGYFGPEE----------EEEIIERINASGADILFVGLGAPK 111 (171)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCCCChhh----------HHHHHHHHHHcCCCEEEEECCCCH
Confidence 35566666667665445566666888876321 111555678899999999988884
No 144
>COG2237 Predicted membrane protein [Function unknown]
Probab=45.92 E-value=63 Score=29.07 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=38.0
Q ss_pred CccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc
Q 026711 47 GLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD 94 (234)
Q Consensus 47 ~~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d 94 (234)
..++-.+++++ ..-|...+..+.+++.+.....+||.++.+.|-.+++
T Consensus 64 geDveIA~vsG~~~vgv~sd~~l~~qld~vl~~~~pd~av~VsDGaeDe 112 (364)
T COG2237 64 GEDVEIAVVSGDKDVGVESDLKLSEQLDEVLSELDPDDAVVVSDGAEDE 112 (364)
T ss_pred CCceEEEEEecCCCcchhhHHHHHHHHHHHHHcCCCcEEEEeccCcccc
Confidence 35777777754 4446667788999999998889999999999987643
No 145
>PRK14341 lipoate-protein ligase B; Provisional
Probab=43.83 E-value=43 Score=27.86 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccccCcccc
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEE 195 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~ 195 (234)
.+-|.+++++..+....+.++++=|.|+|+.|....
T Consensus 19 ~~~q~~~~~~~~~~~~~~~llllEH~pVyT~G~~~~ 54 (213)
T PRK14341 19 LAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAK 54 (213)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCeeCCCCCC
Confidence 444555555544444445566777999999887654
No 146
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.71 E-value=49 Score=27.96 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=30.3
Q ss_pred HhCCCceEEEcCCCCCCchhhHhhhhccC-CCCCCeEEecccCC
Q 026711 77 KSYDARFVINTSELGEDDPLKQNATWLFP-SLKVPWYTTKASKE 119 (234)
Q Consensus 77 ~~~~~dfvl~~GD~~~~d~~~~~~~~~~~-~l~~P~~~v~GNHD 119 (234)
.....|+|+..|-.+.....-.+..+..+ ..++|++.-||||+
T Consensus 38 ~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 38 AEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred HHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 34567999999987644333333333333 78999999999999
No 147
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=41.30 E-value=25 Score=25.49 Aligned_cols=12 Identities=8% Similarity=-0.125 Sum_probs=7.7
Q ss_pred HHHHHhhcCCCC
Q 026711 20 ALYVALNLGQPQ 31 (234)
Q Consensus 20 ~~~~~~~~~~~~ 31 (234)
+++++|++++-.
T Consensus 12 llLtgCatqt~~ 23 (97)
T PF06291_consen 12 LLLTGCATQTFT 23 (97)
T ss_pred HHHcccceeEEE
Confidence 357899865444
No 148
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=41.21 E-value=43 Score=28.69 Aligned_cols=63 Identities=8% Similarity=-0.029 Sum_probs=33.3
Q ss_pred EEEEEeC--CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc---cC-CCCCCeEEecccCC
Q 026711 51 YFISVTG--GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL---FP-SLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gd--G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~---~~-~l~~P~~~v~GNHD 119 (234)
-..+.|| |+. ..+++.++ +.....-.=-+++||..+....=-+.+-+ ++ ...-.+..+-||||
T Consensus 44 PvtvcGDIHGQf-----~Dllelf~-igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHE 112 (303)
T KOG0372|consen 44 PVTVCGDIHGQF-----YDLLELFR-IGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHE 112 (303)
T ss_pred CcEEeecccchH-----HHHHHHHH-hCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccch
Confidence 3468899 543 34555544 22212223479999985332211222322 11 22334688999999
No 149
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=40.91 E-value=37 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCceEEEcCCCCCCchh
Q 026711 70 KQMEDVAKSYDARFVINTSELGEDDPL 96 (234)
Q Consensus 70 ~~i~~~~~~~~~dfvl~~GD~~~~d~~ 96 (234)
..|+++.+.....=.|++||.|+.|++
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~Dpe 79 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQHDPE 79 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCcCHH
Confidence 344555555544558889999988864
No 150
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=40.40 E-value=48 Score=29.73 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHHHhC--CCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 69 LKQMEDVAKSY--DARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 69 ~~~i~~~~~~~--~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
.+.+..+.... +||.||++|=.++.+..+....+.+..+ .|+++.||.-+
T Consensus 280 a~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~-a~v~~~pg~~e 331 (351)
T TIGR02707 280 AKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFI-APVLVYPGEDE 331 (351)
T ss_pred HHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhh-CCEEEeCCcHH
Confidence 34444444456 8999999998987554432223334444 89999999655
No 151
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=39.45 E-value=37 Score=28.77 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
.++.+.|.+..++.+--.=+++||-+-....| +..+.+...++||-++||=--
T Consensus 62 eeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~-EQm~~L~~~gI~yevvPGVss 114 (254)
T COG2875 62 EEIIDLMVDAVREGKDVVRLHSGDPSIYGALA-EQMRELEALGIPYEVVPGVSS 114 (254)
T ss_pred HHHHHHHHHHHHcCCeEEEeecCChhHHHHHH-HHHHHHHHcCCCeEEeCCchH
Confidence 45666777666655533349999986433333 222336788999999999655
No 152
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=38.94 E-value=2.2e+02 Score=24.10 Aligned_cols=40 Identities=3% Similarity=-0.051 Sum_probs=22.7
Q ss_pred EEEEEeCCCC---C--Ch-hHHHHHHHHHHHHHhCCCceEEEcCCCC
Q 026711 51 YFISVTGGFR---P--LE-QQTLLLKQMEDVAKSYDARFVINTSELG 91 (234)
Q Consensus 51 ~F~~~gdG~~---~--~~-~q~~~~~~i~~~~~~~~~dfvl~~GD~~ 91 (234)
-.+|+|.|.. + .. -+.++..+++ ..++.+...+|.+||++
T Consensus 47 ~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~-LYk~gk~~~ilvSGg~~ 92 (239)
T PRK10834 47 VGVVLGTAKYYRTGVINQYYRYRIQGAIN-AYNSGKVNYLLLSGDNA 92 (239)
T ss_pred EEEEcCCcccCCCCCcCHHHHHHHHHHHH-HHHhCCCCEEEEeCCCC
Confidence 3666676531 1 11 1234444444 33457778899999985
No 153
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=36.01 E-value=1.5e+02 Score=22.20 Aligned_cols=66 Identities=3% Similarity=-0.063 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccccCcccc-hHHHHHhHHHHHHHHHHhCccEEEE-----ecCcC
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEE-QLEAKKIYEPLHHIFMKFGVVRSFF-----IFSIP 225 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~-~~~~~~~~~~l~~ll~k~~Vd~vf~-----~~~~~ 225 (234)
..+-+++.+..++.....-.|+++.--++.-...-. ..+..+....|..+..+|+|++++| .||+-
T Consensus 16 ~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q~p~~~~~n~~~~~~~L~~~~~i~l~vC~~aa~~RGl~ 87 (127)
T TIGR03012 16 ASSAYQFAQALLAKGHEIVRVFFYQDGVLNANNLVSPASDEFDLVAAWQQLAQEHQVDLVVCVAAALRRGVV 87 (127)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEehHHHHhhccCCCCccccccHHHHHHHHHHhcCCEEEeeHHHHHHcCCC
Confidence 345567766666643332457777666654322111 1122235556666766999999999 55553
No 154
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=35.81 E-value=31 Score=21.59 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 026711 12 ITQLSLCLALYVALNL 27 (234)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (234)
+++.+++.+.+++|+|
T Consensus 9 i~~~l~~~~~l~~CnT 24 (48)
T PRK10081 9 IFSVLVLSTVLTACNT 24 (48)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4455555566888965
No 155
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=35.37 E-value=1.2e+02 Score=26.84 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCe
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGK 227 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~ 227 (234)
.--+|.++..++..++ +|-.|+ .|.+.--.+.....-++.++.+|+.-+|-+++-+.|=|++
T Consensus 151 dP~eWArk~Vk~fgad--mvTiHl--IsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeK 212 (403)
T COG2069 151 DPGEWARKCVKKFGAD--MVTIHL--ISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEK 212 (403)
T ss_pred CHHHHHHHHHHHhCCc--eEEEEe--ecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCcc
Confidence 3458999999998888 555564 3332211222334467788999999999999999988876
No 156
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=34.70 E-value=80 Score=27.13 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEE
Q 026711 64 QQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYT 113 (234)
Q Consensus 64 ~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~ 113 (234)
+....+.++.+..+...+| +|++|+.+.++..-+....+.+.|+.|++.
T Consensus 95 d~~~ta~~Laa~~~~~~~~-LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t 143 (260)
T COG2086 95 DPLATAKALAAAVKKIGPD-LVLTGKQAIDGDTGQVGPLLAELLGWPQVT 143 (260)
T ss_pred cHHHHHHHHHHHHHhcCCC-EEEEecccccCCccchHHHHHHHhCCceee
Confidence 3345677777777777877 888999865433223333344556667643
No 157
>PRK14348 lipoate-protein ligase B; Provisional
Probab=33.93 E-value=84 Score=26.31 Aligned_cols=41 Identities=7% Similarity=0.098 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHHHhc----c-CCeEEEEeeccccccCcccchHH
Q 026711 158 ASGDLLLNWLKSALEAT----N-GQWCIVVGFHPLVICEEHEEQLE 198 (234)
Q Consensus 158 ~~~~~ql~wL~~~L~~~----~-~~~~IV~~HhP~~~~~~~~~~~~ 198 (234)
...+.|.+|.++..+.. . .+.++++=|.|+|+.|..+...+
T Consensus 15 ~a~~~q~~~~~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ 60 (221)
T PRK14348 15 EAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENN 60 (221)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCEEEEEcCCCCeeCCcCCCchh
Confidence 34566777776655432 1 25678888999999987654443
No 158
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=33.76 E-value=50 Score=27.72 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=20.2
Q ss_pred eEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEE
Q 026711 178 WCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFF 220 (234)
Q Consensus 178 ~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~ 220 (234)
--+|+.|||++-.+....... .........+.++++.+|=+
T Consensus 54 ~dlIItHHP~~f~~~~~~~~~--~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 54 ADLIITHHPLFFKPLKSLTGD--DYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp -SEEEESS-SSSSTSSHCHCH--SHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEcCchhhcCCcccccc--chhhHHHHHHHHCCCEEEEe
Confidence 348899999976543321111 11223334455588877644
No 159
>PRK00955 hypothetical protein; Provisional
Probab=33.56 E-value=1.1e+02 Score=29.79 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhc-cCCeEEEEeeccccc
Q 026711 160 GDLLLNWLKSALEAT-NGQWCIVVGFHPLVI 189 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~-~~~~~IV~~HhP~~~ 189 (234)
++...-..-+.+++. ++-++|+-|+|+-+.
T Consensus 106 pdra~i~y~~~ik~~~p~~~IvlGG~eaS~r 136 (620)
T PRK00955 106 PDRATIVYCNKIKEAYPDVPIIIGGIEASLR 136 (620)
T ss_pred cchHHHHHHHHHHHHCCCCcEEeCChhhhcc
Confidence 344555556666655 444777788888764
No 160
>COG5510 Predicted small secreted protein [Function unknown]
Probab=32.48 E-value=54 Score=20.04 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 026711 11 LITQLSLCLALYVALNL 27 (234)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (234)
+++.++++..++++|++
T Consensus 8 ~i~~vll~s~llaaCNT 24 (44)
T COG5510 8 LIALVLLASTLLAACNT 24 (44)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45555666667889965
No 161
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.12 E-value=26 Score=27.51 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhCccEEEEecCcCCee-ecc
Q 026711 202 IYEPLHHIFMKFGVVRSFFIFSIPGKI-VPF 231 (234)
Q Consensus 202 ~~~~l~~ll~k~~Vd~vf~~~~~~~~~-~~~ 231 (234)
..+.|.+++++++-|+++|-|-+|..+ +..
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~ 107 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSR 107 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHH
Confidence 344677788888888888877777665 443
No 162
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.00 E-value=18 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.7
Q ss_pred HHHHHhCccEEEEecCcCCeeeccccC
Q 026711 208 HIFMKFGVVRSFFIFSIPGKIVPFLRS 234 (234)
Q Consensus 208 ~ll~k~~Vd~vf~~~~~~~~~~~~~~~ 234 (234)
+.+.++|||.+|...+=+..+|+|||.
T Consensus 96 ~~~~~~G~d~~~~~~~~~~~~~~~~~~ 122 (122)
T cd02071 96 ELLKEMGVAEIFGPGTSIEEIIDKIRD 122 (122)
T ss_pred HHHHHCCCCEEECCCCCHHHHHHHHhC
Confidence 356789999999999999999999873
No 163
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.80 E-value=2.4e+02 Score=23.86 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
+..+-+.+.|++.- .-.|+..||+.+.. .+ .+++..-+.+.+.|++|.+-|.|.
T Consensus 116 ~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~------~e----~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 116 EVLAQTEAKLRTQW-NVNIVGSQDGYFTP------EQ----RQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred HHHHHHHHHHHHHh-CCEEEEEeCCCCCH------HH----HHHHHHHHHhcCCCEEEEECCCcH
Confidence 45555666665543 45566678877741 11 223455668889999999999884
No 164
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.46 E-value=87 Score=25.41 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred EEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCCcccCceEEEe
Q 026711 52 FISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQEQIR 130 (234)
Q Consensus 52 F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~~~g~~~~~~~ 130 (234)
++++|- |.. ....+++.......+ +-...+.+.|...-.. .+.-....+.+++|++.+.-.+| ...-..+...
T Consensus 4 i~lvGptGvG---KTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga-~eQL~~~a~~l~vp~~~~~~~~~-~~~~~~~~l~ 77 (196)
T PF00448_consen 4 IALVGPTGVG---KTTTIAKLAARLKLK-GKKVALISADTYRIGA-VEQLKTYAEILGVPFYVARTESD-PAEIAREALE 77 (196)
T ss_dssp EEEEESTTSS---HHHHHHHHHHHHHHT-T--EEEEEESTSSTHH-HHHHHHHHHHHTEEEEESSTTSC-HHHHHHHHHH
T ss_pred EEEECCCCCc---hHhHHHHHHHHHhhc-cccceeecCCCCCccH-HHHHHHHHHHhccccchhhcchh-hHHHHHHHHH
Confidence 456676 532 435566665555444 6677788888732110 00111113456888888664444 2111100000
Q ss_pred CCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEe
Q 026711 131 LPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVG 183 (234)
Q Consensus 131 ~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~ 183 (234)
.....+..+|++||.... ....+.++.|++.++.....-+++++
T Consensus 78 ~~~~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~~~~~~~LVl 121 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRS---------PRDEELLEELKKLLEALNPDEVHLVL 121 (196)
T ss_dssp HHHHTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHhhcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhcCCccceEEE
Confidence 011245778999997432 22456788888888777555555544
No 165
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=29.96 E-value=1.3e+02 Score=26.52 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh----CccEEEEecCcCCeee
Q 026711 159 SGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF----GVVRSFFIFSIPGKIV 229 (234)
Q Consensus 159 ~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~----~Vd~vf~~~~~~~~~~ 229 (234)
+...-++.+++.+++....+.+.+. +.|.. +......+++.+..-+++. +..++|.+||+|..++
T Consensus 130 ttgs~~~~~~~~~~~~~~~~~~~~i--~~~~~----~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~ 198 (316)
T PF00762_consen 130 TTGSYLDEVERALKKSRPNPKVRFI--PSFYD----HPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYV 198 (316)
T ss_dssp THHHHHHHHHHHHHHTHSSSEEEEE-----TT-----HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEe--CCccC----CHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCcccc
Confidence 4556678888888885444333322 11211 1223333556666667776 4899999999998776
No 166
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=29.79 E-value=85 Score=22.72 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=18.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhh
Q 026711 1 MAKRPSWVCTLITQLSLCLALYVALN 26 (234)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (234)
|.|.+.|+-.+++.+++..++|+.-+
T Consensus 1 mN~yp~WKyllil~vl~~~~lyALPn 26 (101)
T PF13721_consen 1 MNRYPLWKYLLILVVLLLGALYALPN 26 (101)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhh
Confidence 77877799988777666666555533
No 167
>PHA03008 hypothetical protein; Provisional
Probab=29.65 E-value=30 Score=28.48 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=27.2
Q ss_pred eEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEE----ecCcCCeee
Q 026711 178 WCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFF----IFSIPGKIV 229 (234)
Q Consensus 178 ~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~----~~~~~~~~~ 229 (234)
.-|++.|-|++..... ... .+.|.+-+.+-+..+-++ ++|+|++++
T Consensus 162 tDILITHgPP~GhLD~--~vG----C~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~ 211 (234)
T PHA03008 162 CDILITASPPFAILDD--DLA----CGDLFSKVIKIKPKFHIFNGLTQFSHPNIFI 211 (234)
T ss_pred CCEEEeCCCCcccccc--ccC----cHHHHHHHHHhCCcEEEeCCccccCCCcEEE
Confidence 4499999999986542 112 122333334445455444 679999875
No 168
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=29.63 E-value=2.7e+02 Score=21.66 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCc
Q 026711 161 DLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSI 224 (234)
Q Consensus 161 ~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~ 224 (234)
...++++++.++...+.-+||+=+---+..+....+.........|..+.+++++.+++..|.=
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHTN 189 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4567788888887444333333332222222111222335677778888888898888877643
No 169
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.57 E-value=1.3e+02 Score=30.23 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=45.4
Q ss_pred cCCCCCCeEEecccCCCccc---------------CceEEEeCCCCCceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHH
Q 026711 104 FPSLKVPWYTTKASKEKEVG---------------CFQEQIRLPHGEALDIIGVNTGSLQGKIPTALPSASGDLLLNWLK 168 (234)
Q Consensus 104 ~~~l~~P~~~v~GNHD~~~g---------------~~~~~~~~P~~~~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~ 168 (234)
.+.-++|+.++|||--.+.. ++.+.-..-.-.+.+|..+|=|.-..-. .|++-.+|.+.+.
T Consensus 85 lelsGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe~tAm----~G~~l~dQtEYV~ 160 (973)
T KOG3724|consen 85 LELSGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEEFTAM----HGHILLDQTEYVN 160 (973)
T ss_pred ccCCCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccchhhhh----ccHhHHHHHHHHH
Confidence 45568999999999873321 1111100011245688888866322111 2677888988887
Q ss_pred HHHHh----ccC---------CeEEEEeec
Q 026711 169 SALEA----TNG---------QWCIVVGFH 185 (234)
Q Consensus 169 ~~L~~----~~~---------~~~IV~~Hh 185 (234)
+.++. .++ +-+|++||-
T Consensus 161 dAIk~ILslYr~~~e~~~p~P~sVILVGHS 190 (973)
T KOG3724|consen 161 DAIKYILSLYRGEREYASPLPHSVILVGHS 190 (973)
T ss_pred HHHHHHHHHhhcccccCCCCCceEEEEecc
Confidence 76642 222 138889983
No 170
>PRK03011 butyrate kinase; Provisional
Probab=28.69 E-value=97 Score=27.86 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHhC--CCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCC
Q 026711 71 QMEDVAKSY--DARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 71 ~i~~~~~~~--~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
.+..+.... +||.||++|=.++.+..++...+.+..+ .|+.+.||+.+
T Consensus 284 ~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~-~pv~i~p~~~e 333 (358)
T PRK03011 284 EIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFI-APVIVYPGEDE 333 (358)
T ss_pred HHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhh-CCeEEEeCCCH
Confidence 333343445 7999999998987333332222223333 69999999998
No 171
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=28.63 E-value=3.3e+02 Score=22.37 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=33.5
Q ss_pred EEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc-cCCCCCCeEEecccCC
Q 026711 50 FYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL-FPSLKVPWYTTKASKE 119 (234)
Q Consensus 50 ~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~-~~~l~~P~~~v~GNHD 119 (234)
..+++.|- |+. .+..+.++...+...|...| .||-.+-..+--..|+. ++..+...+-+|=..|
T Consensus 40 ~~lVvlGSGGHT-----~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsRe 105 (211)
T KOG3339|consen 40 STLVVLGSGGHT-----GEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSRE 105 (211)
T ss_pred eEEEEEcCCCcH-----HHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhh
Confidence 34555565 554 46777777666677888877 66642211111122333 4444444455555555
No 172
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=28.56 E-value=1.4e+02 Score=28.72 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhc-c-CCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeeeccc
Q 026711 162 LLLNWLKSALEAT-N-GQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIVPFL 232 (234)
Q Consensus 162 ~ql~wL~~~L~~~-~-~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~~~~ 232 (234)
+.-+||-..|.+. + ++-.||++|-+-|++. ++++.....|-..|.++|++.+=.|--+|||.
T Consensus 85 q~~qg~a~yl~~~~~~~~~giviG~D~R~~S~---------~fA~l~a~vf~~~g~~v~lf~~~v~TP~vpfa 148 (607)
T KOG1220|consen 85 QFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSK---------RFAELVAAVFLLNGFKVYLFSELVPTPFVPFA 148 (607)
T ss_pred HHHHHHHHHHHHhCCcccceEEEecCCccchH---------HHHHHHHHHHHhCCceEEEeccccCCCcchhH
Confidence 3348887777753 3 3468999998888732 25666777899999999999988888888885
No 173
>PRK10425 DNase TatD; Provisional
Probab=28.54 E-value=98 Score=26.33 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=51.3
Q ss_pred HhCCCceEEEcCCCCCCchhhHhhhhccCCCCCCeEEecccCCCcccCceE----EE-eCCCCCc---eEEEEEeCCCCc
Q 026711 77 KSYDARFVINTSELGEDDPLKQNATWLFPSLKVPWYTTKASKEKEVGCFQE----QI-RLPHGEA---LDIIGVNTGSLQ 148 (234)
Q Consensus 77 ~~~~~dfvl~~GD~~~~d~~~~~~~~~~~~l~~P~~~v~GNHD~~~g~~~~----~~-~~P~~~~---~~~i~lDT~~~~ 148 (234)
++.....++.+|-.- ..|+...++..... .++++.|=|=++...+.+ .. .+-.... +-=||||-.+
T Consensus 25 ~~~gv~~~i~~~~~~---~~~~~~~~l~~~~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~vaIGEiGLDy~~-- 98 (258)
T PRK10425 25 FAAGVNGMLITGTNL---RESQQAQKLARQYP-SCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNR-- 98 (258)
T ss_pred HHCCCCEEEEeCCCH---HHHHHHHHHHHhCC-CEEEEEEeCcCccccCCHHHHHHHHHhccCCCEEEEeeeeecccc--
Confidence 345666677666542 23444444433332 278899999643221100 00 0001122 2236787531
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeecc
Q 026711 149 GKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHP 186 (234)
Q Consensus 149 ~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP 186 (234)
. ....+.|.++++.+|+-+.+-.+-|+.|-+
T Consensus 99 ---~----~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r 129 (258)
T PRK10425 99 ---N----FSTPEEQERAFVAQLAIAAELNMPVFMHCR 129 (258)
T ss_pred ---C----CCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 1 124578999999999987664444566865
No 174
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=28.43 E-value=77 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhccC-CeEEEE
Q 026711 160 GDLLLNWLKSALEATNG-QWCIVV 182 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~-~~~IV~ 182 (234)
.++|++|.++..+.... +++++.
T Consensus 130 D~~Qv~wak~~~~~~~~~k~ILv~ 153 (209)
T PRK13738 130 DPAQVAWMKRQTPPTLESKIILVQ 153 (209)
T ss_pred CHHHHHHHHHhhhccCCceEEEEC
Confidence 56999999998776633 444443
No 175
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=27.97 E-value=2.3e+02 Score=21.52 Aligned_cols=65 Identities=8% Similarity=0.043 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCc-ccchHHHHHhHHHHHHHHHHhCccEEEE-----ecCcCC
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEE-HEEQLEAKKIYEPLHHIFMKFGVVRSFF-----IFSIPG 226 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~-~~~~~~~~~~~~~l~~ll~k~~Vd~vf~-----~~~~~~ 226 (234)
.-+++-+..|++-.-.-.|.++-.-++.... .....+--++..++..++.++||.+.+| .||+-.
T Consensus 19 ~A~~fA~all~~gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~~ca~~RGv~~ 89 (126)
T COG1553 19 SALRFAEALLEQGHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCVACALRRGVTE 89 (126)
T ss_pred HHHHHHHHHHHcCCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeHHHHHhcCCcc
Confidence 3456666766664334455555333333211 0011011236778899999999999999 566543
No 176
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.95 E-value=84 Score=24.02 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhc-cCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCeeecccc
Q 026711 162 LLLNWLKSALEAT-NGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGKIVPFLR 233 (234)
Q Consensus 162 ~ql~wL~~~L~~~-~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~~~~~ 233 (234)
.+..-+.+.|++. ..+..|+++=-+....+ + .....+.++++||+.+|-.-+-+.+|+-+||
T Consensus 69 ~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~---~-------~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~ 131 (137)
T PRK02261 69 IDCRGLREKCIEAGLGDILLYVGGNLVVGKH---D-------FEEVEKKFKEMGFDRVFPPGTDPEEAIDDLK 131 (137)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCcc---C-------hHHHHHHHHHcCCCEEECcCCCHHHHHHHHH
Confidence 3444445666655 33445555544333211 1 1123346788999999998777777777765
No 177
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=27.28 E-value=3.2e+02 Score=24.41 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccccccCCCCCCCCCccEEEEEEeCC
Q 026711 11 LITQLSLCLALYVALNLGQPQKSIYQRTNGISSNRKGLDFYFISVTGG 58 (234)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~gdG 58 (234)
+++.++++.+++++|...... ++.......++|...+++
T Consensus 6 ~~~~~~~~~~~l~gCg~~~~~---------~~~~~~~~~i~~~~~~~~ 44 (437)
T TIGR03850 6 LALALAMAASSLAGCGSGTAD---------GASTGEEVTLKVAAFEGG 44 (437)
T ss_pred HHHHHHHHHHHHhhccCCCCC---------CCCCCCCceEEEEEecCC
Confidence 344444444567889542111 111223456888776554
No 178
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=27.15 E-value=2e+02 Score=20.21 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEe----eccccccCcccchHHHHHhHHHHHHHHHHhCccE
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVG----FHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVR 217 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~----HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~ 217 (234)
..+..+.|++.++..+...+||+| ||+.+....... ...+.|..++++.+...
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~~~-----~~~~~l~~~~~~~~l~~ 70 (119)
T PF14529_consen 14 REEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNTNS-----RRGEQLLDWLDSHNLVD 70 (119)
T ss_dssp CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCHHH-----HHHHHHHHHHHHCTEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhccccc-----hhHHHHHHHhhhceeee
Confidence 456778888888887776788887 777766432111 24566778888877544
No 179
>PRK14346 lipoate-protein ligase B; Provisional
Probab=26.79 E-value=1.2e+02 Score=25.64 Aligned_cols=37 Identities=3% Similarity=-0.044 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccch
Q 026711 159 SGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQ 196 (234)
Q Consensus 159 ~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~ 196 (234)
..+.|.++.+.. .....+.++++=|.|+|+.|.....
T Consensus 16 a~~~q~~~~~~~-~~~~~d~llllEHppVyT~G~~~~~ 52 (230)
T PRK14346 16 TVQAMQAFTAER-TPETPDELWICEHPPVYTQGLAGKA 52 (230)
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEEcCCCCeeCCCCCCh
Confidence 345666665553 3334467778889999999876543
No 180
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=26.74 E-value=3.9e+02 Score=23.31 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=8.6
Q ss_pred CceEEEEEeCC
Q 026711 135 EALDIIGVNTG 145 (234)
Q Consensus 135 ~~~~~i~lDT~ 145 (234)
.++.++.+||.
T Consensus 25 ~~~~~iainTd 35 (303)
T cd02191 25 EGRSAVAVNTD 35 (303)
T ss_pred CCccEEEEECc
Confidence 34789999986
No 181
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.62 E-value=2.7e+02 Score=23.85 Aligned_cols=55 Identities=18% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 162 LLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
+..+-.++.|.+.-..-+||..||..+...+ + +++..-+.+++.|++|-+-|.|.
T Consensus 119 ~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e-----~-----~~i~~~I~~s~pdil~VgmG~P~ 173 (253)
T COG1922 119 GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEE-----E-----EAIVERIAASGPDILLVGMGVPR 173 (253)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCCChhh-----H-----HHHHHHHHhcCCCEEEEeCCCch
Confidence 4555556666544333456666766655321 1 24455668899999999999985
No 182
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=26.21 E-value=2.2e+02 Score=25.02 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhccCC-eEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh----CccEEEEecCcCCeee
Q 026711 160 GDLLLNWLKSALEATNGQ-WCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF----GVVRSFFIFSIPGKIV 229 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~-~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~----~Vd~vf~~~~~~~~~~ 229 (234)
...-.+.+.+.+++.... +.+-+. +.|.. +......+.+.+...+++. .+.++|.+||+|...+
T Consensus 135 ~gs~~~~~~~~l~~~~~~~~~~~~i--~~~~~----~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~ 203 (322)
T TIGR00109 135 TGSSFNELAEALKKLRSLRPTISVI--ESWYD----NPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYV 203 (322)
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEe--Ccccc----CcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHh
Confidence 334567778888876542 222111 11111 1222222334444444443 3679999999998765
No 183
>PRK14345 lipoate-protein ligase B; Provisional
Probab=26.12 E-value=98 Score=26.16 Aligned_cols=37 Identities=5% Similarity=0.048 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHHHhccCCeEEEEeeccccccCccc
Q 026711 158 ASGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHE 194 (234)
Q Consensus 158 ~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~ 194 (234)
...+.|.++.++.++....+.++++=|.|+|+.|..+
T Consensus 24 ~~~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~ 60 (234)
T PRK14345 24 EAWDLQRELADARVAGEGPDTLLLLEHPAVYTAGKRT 60 (234)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccCCCCC
Confidence 3455677777766655445677788899999988754
No 184
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=25.99 E-value=1e+02 Score=25.32 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=24.3
Q ss_pred eEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEec
Q 026711 178 WCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIF 222 (234)
Q Consensus 178 ~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~ 222 (234)
++.|+-|| .|.... ..+ .+|...+.++++|++.|+.
T Consensus 60 Pt~vip~k-~~a~R~-~~d-------~eL~~~l~e~~~d~v~lAG 95 (206)
T KOG3076|consen 60 PTLVIPHK-RFASRE-KYD-------NELAEVLLELGTDLVCLAG 95 (206)
T ss_pred CEEEeccc-cccccc-cCc-------HHHHHHHHHhCCCEEEehh
Confidence 77888888 333221 122 4577788999999999954
No 185
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=25.82 E-value=3.1e+02 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.273 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHHhCccEE
Q 026711 200 KKIYEPLHHIFMKFGVVRS 218 (234)
Q Consensus 200 ~~~~~~l~~ll~k~~Vd~v 218 (234)
....+.+..+.++++|..+
T Consensus 131 ~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 131 AAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 4456667778888886654
No 186
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=25.78 E-value=1.7e+02 Score=23.21 Aligned_cols=42 Identities=12% Similarity=-0.099 Sum_probs=25.8
Q ss_pred CeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecCcCCe
Q 026711 177 QWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFSIPGK 227 (234)
Q Consensus 177 ~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~~~~~ 227 (234)
.++|.+.|--.+... .. .+.+..++++.++|+++|+|+|...
T Consensus 78 g~~i~l~HG~~~~~~--~~-------~~~~~~~~~~~~~dvii~GHTH~p~ 119 (178)
T cd07394 78 QFKIGLIHGHQVVPW--GD-------PDSLAALQRQLDVDILISGHTHKFE 119 (178)
T ss_pred CEEEEEEECCcCCCC--CC-------HHHHHHHHHhcCCCEEEECCCCcce
Confidence 367888885332211 11 1223445667789999999999653
No 187
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=25.49 E-value=63 Score=28.72 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc-cCCCCCCeEEeccc
Q 026711 68 LLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL-FPSLKVPWYTTKAS 117 (234)
Q Consensus 68 ~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~-~~~l~~P~~~v~GN 117 (234)
....+.+..++.+||+||..||-.+ .-+..+ ...+++|+.++=|=
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~-----~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNE-----ALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHH-----HHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCch-----HHHHHHHHHHhCCCEEEecCC
Confidence 4444555566789999999999632 001111 23568898777643
No 188
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=25.18 E-value=2.6e+02 Score=25.25 Aligned_cols=58 Identities=12% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHh----ccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCc-cEEEEecCcCC
Q 026711 161 DLLLNWLKSALEA----TNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGV-VRSFFIFSIPG 226 (234)
Q Consensus 161 ~~ql~wL~~~L~~----~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~V-d~vf~~~~~~~ 226 (234)
..+..++++.|+. +++...+|+-|||+-. |-.. ......+.+.+|+| +-|+..|..|.
T Consensus 250 ~s~r~fi~~ilaSFa~hapa~t~liikhHpmdr-g~id-------y~~~i~~~~~q~~v~~RvlYvhd~~l 312 (403)
T COG3562 250 RSVRFFITEILASFAEHAPAGTNLIIKHHPMDR-GFID-------YPRDIKRRFVQYEVKGRVLYVHDVPL 312 (403)
T ss_pred hhHHHHHHHHHHHHHhhCccccceEEEeccccc-cchh-------hHHHHHHHHHHhccCceEEEecCCCc
Confidence 3566777777764 3456889999999976 3221 12223345667754 45566655554
No 189
>PRK14349 lipoate-protein ligase B; Provisional
Probab=24.95 E-value=1.5e+02 Score=24.83 Aligned_cols=37 Identities=5% Similarity=-0.021 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHhccCCeEEEEeeccccccCcccch
Q 026711 159 SGDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQ 196 (234)
Q Consensus 159 ~~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~ 196 (234)
..+.|.++.++.... ..+.++++=|.|+|+.|..+..
T Consensus 14 a~~~q~~~~~~~~~~-~~d~llllEH~pVyT~G~~~~~ 50 (220)
T PRK14349 14 VWDAMKAFTAARGPG-TADEIWLCEHAPVYTLGQAGRP 50 (220)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEcCCCCeeCCCCCCh
Confidence 355666676654332 3457777889999998876543
No 190
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=24.95 E-value=2.2e+02 Score=25.28 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEeeccccccCcccchHHHHHhHHHHHHHHHHh---CccEEEEecCcCCeee
Q 026711 160 GDLLLNWLKSALEATNGQWCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKF---GVVRSFFIFSIPGKIV 229 (234)
Q Consensus 160 ~~~ql~wL~~~L~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~---~Vd~vf~~~~~~~~~~ 229 (234)
...-.+.+.+.|++.+....|-+ -|.|.. +.....-+++....-++++ ...++|.+||+|...+
T Consensus 133 t~s~~~~~~~al~~~~~~~~i~~--I~~~~~----~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~ 199 (320)
T COG0276 133 TGSYVDELARALKELRGQPKIST--IPDYYD----EPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYI 199 (320)
T ss_pred HHHHHHHHHHHHHhcCCCCceEE--ecCccC----ChHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCchhhh
Confidence 34456677788877663212211 122221 2223334566666677777 5899999999998655
No 191
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.36 E-value=1.7e+02 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 202 IYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 202 ~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
....+...+++++|+++|+....+.++
T Consensus 216 ~l~~l~~~ik~~~v~~If~e~~~~~~~ 242 (286)
T cd01019 216 RLAKIRKEIKEKGATCVFAEPQFHPKI 242 (286)
T ss_pred HHHHHHHHHHHcCCcEEEecCCCChHH
Confidence 455677888999999999976666543
No 192
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=24.13 E-value=4.9e+02 Score=23.27 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.4
Q ss_pred CceEEEEEeCC
Q 026711 135 EALDIIGVNTG 145 (234)
Q Consensus 135 ~~~~~i~lDT~ 145 (234)
.++.|+.+||.
T Consensus 42 ~~~~~iainTD 52 (349)
T TIGR00065 42 EGVEFIAINTD 52 (349)
T ss_pred CceEEEEEECC
Confidence 45788888885
No 193
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=23.72 E-value=2.2e+02 Score=25.61 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=37.1
Q ss_pred CccEEEEEEeC-CCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCC
Q 026711 47 GLDFYFISVTG-GFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGED 93 (234)
Q Consensus 47 ~~~~~F~~~gd-G~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~ 93 (234)
+.++-.+++++ ...+...+..+.+++++..+..+||.++.+.|-.++
T Consensus 64 GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~VsDGaeD 111 (344)
T PF04123_consen 64 GEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIVVSDGAED 111 (344)
T ss_pred CCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEEEecChhh
Confidence 44777887765 334566777899999999999999999999997653
No 194
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.69 E-value=2e+02 Score=22.30 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=21.3
Q ss_pred chHHHHHhHHHHHHHHHHhCccEEEE-ecCcCCe
Q 026711 195 EQLEAKKIYEPLHHIFMKFGVVRSFF-IFSIPGK 227 (234)
Q Consensus 195 ~~~~~~~~~~~l~~ll~k~~Vd~vf~-~~~~~~~ 227 (234)
...++.++...|..+++.|+||-|.- .|.-+++
T Consensus 42 ~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGK 75 (138)
T PF11215_consen 42 STEEVRKFQFTFAKLMEDYKVDKVVIKERATKGK 75 (138)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCC
Confidence 44566677778888888888876543 4444443
No 195
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=23.29 E-value=1e+02 Score=29.34 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCcCCCCCCCCCCcHHHHHHHHHHHHHhccCCeEEEEeeccc
Q 026711 136 ALDIIGVNTGSLQGKIPTALPSASGDLLLNWLKSALEATNGQWCIVVGFHPL 187 (234)
Q Consensus 136 ~~~~i~lDT~~~~~~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~IV~~HhP~ 187 (234)
+-.++.||=. .....-+-.+||++.|+..+. .+||+.|---
T Consensus 171 ~pDlLLLDEP----------TNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~ 211 (530)
T COG0488 171 EPDLLLLDEP----------TNHLDLESIEWLEDYLKRYPG-TVIVVSHDRY 211 (530)
T ss_pred CCCEEEEcCC----------CcccCHHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 3457788831 112345779999999998888 8899999643
No 196
>PRK10494 hypothetical protein; Provisional
Probab=23.27 E-value=2.5e+02 Score=23.94 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=5.4
Q ss_pred EEEEEeCCC
Q 026711 51 YFISVTGGF 59 (234)
Q Consensus 51 ~F~~~gdG~ 59 (234)
-++|.|+|.
T Consensus 81 ~IVVLGgG~ 89 (259)
T PRK10494 81 YIVVLGGGY 89 (259)
T ss_pred EEEEcCCCc
Confidence 355667764
No 197
>PRK10533 putative lipoprotein; Provisional
Probab=23.24 E-value=93 Score=24.74 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccccc
Q 026711 12 ITQLSLCLALYVALNLGQPQKSIYQR 37 (234)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (234)
+..++=|.+++++|.+-+|.+.+.+.
T Consensus 6 ~a~~~p~alllsacttv~pa~kd~g~ 31 (171)
T PRK10533 6 LALLIPCALLLSACTTVTPAYKDNGS 31 (171)
T ss_pred hHHHHHHHHHHhHccccccccccCCC
Confidence 34445566779999999999876654
No 198
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=23.13 E-value=96 Score=26.20 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=22.2
Q ss_pred eEEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEE
Q 026711 178 WCIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFF 220 (234)
Q Consensus 178 ~~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~ 220 (234)
--+|+.|||++-.+........ ..+. ...+.|+++.+|-+
T Consensus 58 ~dlIitHHP~~f~~~~~~~~~~--~~~~-~~~li~~~I~vy~~ 97 (249)
T TIGR00486 58 ADLIITHHPLIWKPLKRLIRGI--KPGR-LKILLQNDISLYSA 97 (249)
T ss_pred CCEEEEcCccccCCcccccCCC--HHHH-HHHHHHCCCeEEEe
Confidence 3488899999765422111111 1222 34567788877654
No 199
>PLN02790 transketolase
Probab=22.92 E-value=2e+02 Score=28.12 Aligned_cols=68 Identities=6% Similarity=0.084 Sum_probs=41.7
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCC-CceEEEcCCCC--CC----chhhHhhhhccCCCCCCeEEeccc-CC
Q 026711 48 LDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYD-ARFVINTSELG--ED----DPLKQNATWLFPSLKVPWYTTKAS-KE 119 (234)
Q Consensus 48 ~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~-~dfvl~~GD~~--~~----d~~~~~~~~~~~~l~~P~~~v~GN-HD 119 (234)
....|.++|||.. .+-...|++.-... .+ +.+|++.=||. .+ ........+.++.+..+++-+-|. ||
T Consensus 137 ~~~v~~~~GDG~l---~eG~~~EAl~~A~~-~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd 212 (654)
T PLN02790 137 DHYTYCILGDGCQ---MEGISNEAASLAGH-WGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTD 212 (654)
T ss_pred CCEEEEEECcCcc---cchHHHHHHHHHHH-hCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCC
Confidence 4568899999854 33456677765443 34 46888888872 11 111111123367788998888665 78
No 200
>PTZ00089 transketolase; Provisional
Probab=22.82 E-value=2.1e+02 Score=28.05 Aligned_cols=69 Identities=4% Similarity=0.051 Sum_probs=42.2
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCC--C----chhhHhhhhccCCCCCCeEEe-cccCC
Q 026711 48 LDFYFISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGE--D----DPLKQNATWLFPSLKVPWYTT-KASKE 119 (234)
Q Consensus 48 ~~~~F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~--~----d~~~~~~~~~~~~l~~P~~~v-~GNHD 119 (234)
....|.++|||.. .+-.+.|++.......-+.+|+++=||.- + ....+.....++.+...++-+ =||||
T Consensus 148 ~~~v~~v~GDG~l---~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D 223 (661)
T PTZ00089 148 DNYVYVICGDGCL---QEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTD 223 (661)
T ss_pred CCEEEEEECccch---hhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCC
Confidence 4568888999854 33456777765543222568888888721 1 111111223367788888887 69888
No 201
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=22.67 E-value=4.7e+02 Score=22.10 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=24.8
Q ss_pred EEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEE
Q 026711 179 CIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFF 220 (234)
Q Consensus 179 ~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~ 220 (234)
-+++.-+|-+..|. +++.+....++-+.+..+.++.+.++.
T Consensus 102 ~v~~l~~~~f~Dg~-~~~Wd~~~v~~~l~~~ie~~~~~~iiT 142 (247)
T KOG3332|consen 102 NVVVLDTPFFQDGP-GEDWDPDAVASILLQHIEVLNIDTIIT 142 (247)
T ss_pred heEEecCCcCCCCc-ccccCHHHHHHHHHHHHHccCccEEEE
Confidence 35566667776552 233333346666777777777777776
No 202
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.65 E-value=1.1e+02 Score=22.16 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=31.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc-----cCCC-CCCeEEecccCC
Q 026711 52 FISVTGGFRPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL-----FPSL-KVPWYTTKASKE 119 (234)
Q Consensus 52 F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~-----~~~l-~~P~~~v~GNHD 119 (234)
.+++|-|.+... ....+.+.+..++..+ .-+.+|=+- ..|.+....+. .... =+|++.+.|+|=
T Consensus 3 illvgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE-~~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~ 72 (103)
T cd03413 3 VVFMGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVE-GYPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHA 72 (103)
T ss_pred EEEEECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEehhheecccc
Confidence 456788866433 2444455554433332 222223222 24444443222 2222 489999999995
No 203
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=22.47 E-value=3.1e+02 Score=23.43 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred EEEEEeCCC--CCChhHHHHHHHHHHHHHhCCCceEEEcCCCCCCc----hhhHhhhhccCCCCCCeEEecccCC
Q 026711 51 YFISVTGGF--RPLEQQTLLLKQMEDVAKSYDARFVINTSELGEDD----PLKQNATWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 51 ~F~~~gdG~--~~~~~q~~~~~~i~~~~~~~~~dfvl~~GD~~~~d----~~~~~~~~~~~~l~~P~~~v~GNHD 119 (234)
-|+++|+-. .+..+.+.+.+.++++++ .+.. .|+=||++..+ ..|+..- ...-..+||.-.|---
T Consensus 110 dFiiVgp~~dpA~~k~~kn~~e~fe~Ia~-~ka~-FvSRGD~SGT~~~E~~lWk~~g--~~p~~~~wY~s~G~GM 180 (280)
T COG2998 110 DFIIVGPADDPAGIKDAKNGKEAFEKIAE-EKAK-FVSRGDNSGTDSKELSLWKVTG--IEPTVKGWYISAGQGM 180 (280)
T ss_pred eEEEECCcccchhcccchhHHHHHHHHHH-cCCe-eEecCCCCCccHHHHHHHHHcC--CCCCCCcceeecCcch
Confidence 577777621 233345677888887765 4434 56889985322 2464221 1122234776666543
No 204
>PHA00407 phage lambda Rz1-like protein
Probab=21.96 E-value=1e+02 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhc
Q 026711 6 SWVCTLITQLSLCLALYVALNL 27 (234)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (234)
.|..++|-.++.|++.+++|+.
T Consensus 30 rwkaaLIGlllicv~tISGCaS 51 (84)
T PHA00407 30 RWKAALIGLLLICVATISGCAS 51 (84)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 4999999999999999999975
No 205
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=21.82 E-value=2e+02 Score=21.48 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=30.2
Q ss_pred EeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEEecC
Q 026711 182 VGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFFIFS 223 (234)
Q Consensus 182 ~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~~~~ 223 (234)
+.|+|-...-....-.++.+..+.|...++++|-+++|+-.+
T Consensus 53 i~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~~vvf~E~~ 94 (121)
T PF04677_consen 53 IQHVPSLTELDEEVWEEIRNFQKSLRKMFASQGKDVVFFERV 94 (121)
T ss_pred cceecccccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 568776654332223467778889999999999999998543
No 206
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.74 E-value=1e+02 Score=28.09 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCceEEEcCCCCCCchhhHhhhhc-cCCCCCCeEEe-cccC
Q 026711 66 TLLLKQMEDVAKSYDARFVINTSELGEDDPLKQNATWL-FPSLKVPWYTT-KASK 118 (234)
Q Consensus 66 ~~~~~~i~~~~~~~~~dfvl~~GD~~~~d~~~~~~~~~-~~~l~~P~~~v-~GNH 118 (234)
......+.++..+.+||.|+.-||-.+- -+..+ ....++|+.++ .|+-
T Consensus 78 ~~~i~~~~~vl~~~kPD~VlVhGDT~t~-----lA~alaa~~~~IpV~HvEAGlR 127 (383)
T COG0381 78 GNIIEGLSKVLEEEKPDLVLVHGDTNTT-----LAGALAAFYLKIPVGHVEAGLR 127 (383)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcchH-----HHHHHHHHHhCCceEEEecccc
Confidence 3566667777778999999999996421 00011 23457887554 4554
No 207
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.60 E-value=2.2e+02 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
+....+...+++++|.++|+.-.++.
T Consensus 197 ~~l~~l~~~ik~~~v~~if~e~~~~~ 222 (276)
T cd01016 197 RDINELVDLIVERKIKAIFVESSVNQ 222 (276)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 34567888999999999999665554
No 208
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=21.53 E-value=1.7e+02 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=19.7
Q ss_pred ceEEEcCCC---CCCchhhHhh-hhccCCCCCCeEEecccCC
Q 026711 82 RFVINTSEL---GEDDPLKQNA-TWLFPSLKVPWYTTKASKE 119 (234)
Q Consensus 82 dfvl~~GD~---~~~d~~~~~~-~~~~~~l~~P~~~v~GNHD 119 (234)
..++.+|+. |+.+...... .+......+..+.+.|.+.
T Consensus 325 r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~~~d~vi~~g~~~ 366 (417)
T TIGR01143 325 KKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEA 366 (417)
T ss_pred CEEEEEcCchhcChHHHHHHHHHHHHHHHcCCCEEEEECHHH
Confidence 568888886 4443333222 1223344555666667544
No 209
>PRK12435 ferrochelatase; Provisional
Probab=21.52 E-value=3e+02 Score=24.16 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=13.6
Q ss_pred ccEEEEecCcCCeee
Q 026711 215 VVRSFFIFSIPGKIV 229 (234)
Q Consensus 215 Vd~vf~~~~~~~~~~ 229 (234)
+.++|.+||+|..++
T Consensus 175 ~~llfSaHslP~~~i 189 (311)
T PRK12435 175 AVLIVSAHSLPEKII 189 (311)
T ss_pred eEEEEecCCCchhHh
Confidence 689999999999876
No 210
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.47 E-value=3.8e+02 Score=22.61 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCCeee
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPGKIV 229 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~~~~ 229 (234)
+...++...+++++|+++|+-.+++.+.+
T Consensus 204 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~ 232 (266)
T cd01018 204 ADLKRLIDLAKEKGVRVVFVQPQFSTKSA 232 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcHHH
Confidence 34566888899999999999777666543
No 211
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=21.30 E-value=4.1e+02 Score=22.04 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEee
Q 026711 162 LLLNWLKSALEATNGQWCIVVGF 184 (234)
Q Consensus 162 ~ql~wL~~~L~~~~~~~~IV~~H 184 (234)
.+.+.+.+.|+.++.+-++|+.|
T Consensus 3 ~~~~~~~~~l~~~~~~~vlvfVH 25 (233)
T PF05990_consen 3 AFQAQLNQRLAKSPDKEVLVFVH 25 (233)
T ss_pred HHHHHHHHHHhhCCCCeEEEEEe
Confidence 56678899999988899999999
No 212
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.24 E-value=2.6e+02 Score=23.86 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 202 IYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 202 ~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
...++...+++.+|.++|+.-.++.+.
T Consensus 208 ~l~~l~~~ik~~~v~~if~e~~~~~~~ 234 (282)
T cd01017 208 QLAELVEFVKKSDVKYIFFEENASSKI 234 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHH
Confidence 455678889999999999977776543
No 213
>PRK10799 metal-binding protein; Provisional
Probab=21.22 E-value=1.4e+02 Score=25.11 Aligned_cols=39 Identities=8% Similarity=-0.111 Sum_probs=20.9
Q ss_pred EEEEeeccccccCcccchHHHHHhHHHHHHHHHHhCccEEEE
Q 026711 179 CIVVGFHPLVICEEHEEQLEAKKIYEPLHHIFMKFGVVRSFF 220 (234)
Q Consensus 179 ~IV~~HhP~~~~~~~~~~~~~~~~~~~l~~ll~k~~Vd~vf~ 220 (234)
-+++.|||++-.+....... ........+-++++.+|-+
T Consensus 58 dlIitHHP~~~~~~~~~~~~---~~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 58 DAVIVHHGYFWKGESPVIRG---MKRNRLKTLLANDINLYGW 96 (247)
T ss_pred CEEEECCchhccCCCccccc---hHHHHHHHHHHCCCeEEEE
Confidence 37779999875432111111 1223334556688877665
No 214
>PRK09810 entericidin A; Provisional
Probab=21.10 E-value=1.1e+02 Score=18.44 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhc
Q 026711 16 SLCLALYVALNL 27 (234)
Q Consensus 16 ~~~~~~~~~~~~ 27 (234)
+++++++++|+|
T Consensus 10 ~~~~~~L~aCNT 21 (41)
T PRK09810 10 LLASTLLTGCNT 21 (41)
T ss_pred HHHHHHHhhhhh
Confidence 334446889975
No 215
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=21.03 E-value=2e+02 Score=25.07 Aligned_cols=28 Identities=4% Similarity=-0.024 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
+....+...+++.+|.++|+.-.++.+.
T Consensus 239 ~~l~~l~~~ik~~~v~~If~e~~~~~~~ 266 (311)
T PRK09545 239 QRLHEIRTQLVEQKATCVFAEPQFRPAV 266 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChHH
Confidence 3455678888999999999977766544
No 216
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=20.95 E-value=4.2e+02 Score=20.85 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCCee
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPGKI 228 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~~~ 228 (234)
+....+.+.+.+..=.+|+..+|+|++|
T Consensus 140 d~lG~lnq~lA~~Ad~V~~vv~Gip~~l 167 (167)
T PF02283_consen 140 DLLGRLNQRLAARADEVYLVVAGIPLRL 167 (167)
T ss_dssp HHHHHHHHHHHHH-SEEEEEETTEEEE-
T ss_pred HHHHHHHHHHHHHcCEEEEEeCCccccC
Confidence 4455677888888888888899999875
No 217
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.80 E-value=1e+02 Score=16.50 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhh
Q 026711 13 TQLSLCLALYVALN 26 (234)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (234)
+..++.++.+++|+
T Consensus 11 l~~l~a~~~LagCs 24 (25)
T PF08139_consen 11 LFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHhhcc
Confidence 33444455577785
No 218
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=20.41 E-value=1.2e+02 Score=25.01 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHhcc
Q 026711 159 SGDLLLNWLKSALEATN 175 (234)
Q Consensus 159 ~~~~ql~wL~~~L~~~~ 175 (234)
+.++|++|.++.++...
T Consensus 131 ~D~~Qv~wa~~~~~~~~ 147 (202)
T TIGR02743 131 DDPEQLAWAQQQLPSCP 147 (202)
T ss_pred CCHHHHHHHHHhcccCC
Confidence 35699999999877664
No 219
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=20.25 E-value=1.6e+02 Score=24.93 Aligned_cols=63 Identities=10% Similarity=-0.090 Sum_probs=33.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHHhCCCce-EEEcCCCCCCchhhHhhhhc----cCCCCCCeEEecccCC
Q 026711 52 FISVTGGFRPLEQQTLLLKQMEDVAKSYDARF-VINTSELGEDDPLKQNATWL----FPSLKVPWYTTKASKE 119 (234)
Q Consensus 52 F~~~gdG~~~~~~q~~~~~~i~~~~~~~~~df-vl~~GD~~~~d~~~~~~~~~----~~~l~~P~~~v~GNHD 119 (234)
..+-||-+. +.-.+.+....-. .-||. -|+.||..+....-.+.|.+ ..+..-..-.+-||||
T Consensus 48 VTvCGDIHG---QFyDL~eLFrtgG--~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHE 115 (306)
T KOG0373|consen 48 VTVCGDIHG---QFYDLLELFRTGG--QVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHE 115 (306)
T ss_pred eeEeeccch---hHHHHHHHHHhcC--CCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccch
Confidence 446799332 2235666554322 33454 78999985433321233322 2233444678889999
No 220
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=20.20 E-value=4.5e+02 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHhCccEEEEecCcCC
Q 026711 201 KIYEPLHHIFMKFGVVRSFFIFSIPG 226 (234)
Q Consensus 201 ~~~~~l~~ll~k~~Vd~vf~~~~~~~ 226 (234)
+....+...+++.+|+++|.....+.
T Consensus 407 ~~L~~Li~~IK~~~V~~IF~Epq~~~ 432 (479)
T TIGR03772 407 ADRRRLTRTIENLKVPAVFLEPNLAA 432 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 34567888999999999999666653
Done!