BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026712
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 273 bits (697), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 132/164 (80%), Positives = 148/164 (90%)
Query: 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
LDSISG + + S+FP V+STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV E TNLEDA
Sbjct: 62 LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 190 ARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
A++LLETKYRRLPVVD GKLVG+ITRGNVVRAALQIKR G+R+
Sbjct: 122 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRN 165
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 252 bits (644), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 121/159 (76%), Positives = 145/159 (91%)
Query: 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
YTVGDF T +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDS
Sbjct: 4 YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
ISG +QNDT+LFP+V+STWKTFNELQ+L+SKT GKVVGDL TP+PLVV ++TNLEDAARL
Sbjct: 64 ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAARL 123
Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGE 231
LLETK+RRLPVVD GKL+G++TRGNVVRAALQIKR+ +
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 10/83 (12%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL--AL-- 130
VGD T V+ +T +++A L+E + PV+D D KL+G+++ +++ AL
Sbjct: 100 VGDLXTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157
Query: 131 ----DSISGGNQNDTSLFPNVNS 149
DSISG +QNDT+LFP+V+S
Sbjct: 158 KRNADSISGRSQNDTNLFPDVDS 180
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/164 (76%), Positives = 138/164 (84%), Gaps = 14/164 (8%)
Query: 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDA 189
LDS +STWKTFN +Q+LLSKTNGK+VGDLMTPAPLVV E TNLEDA
Sbjct: 62 LDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 107
Query: 190 ARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
A++LLETKYRRLPVVD GKLVG+ITRGNVVRAALQIKR G+R+
Sbjct: 108 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRN 151
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 35/138 (25%)
Query: 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTS 142
ED+ + TVD AL + + I G PV++D+ K+VG+++ D+ A +
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148
Query: 143 LFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLP 202
GK+V +LMT + V E+ +E+A ++++E + RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185
Query: 203 VVDGYGKLVGLITRGNVV 220
VVD GKLVGLIT ++V
Sbjct: 186 VVDERGKLVGLITMSDLV 203
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 59 GVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKL 118
G+ + R G V + MTK ++ V + V+EAL+ ++E RI PV+D+ KL
Sbjct: 137 GIITKKDIAAREGKL-VKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 119 VGVVSDYDLLA 129
VG+++ DL+A
Sbjct: 194 VGLITMSDLVA 204
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 33/125 (26%)
Query: 97 ALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNE 156
ALE + ++ FPV++ + KLVG++S
Sbjct: 23 ALELFKKYKVRSFPVVNKEGKLVGIIS--------------------------------- 49
Query: 157 LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITR 216
++R+L + + + L+ VV EN L+ AA+L+LE YRR+ VVD GK VG++T
Sbjct: 50 VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTV 109
Query: 217 GNVVR 221
G+++R
Sbjct: 110 GDIIR 114
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 108 GFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN-- 165
PV+D + LVG+V + DLL DS T L + W + L K
Sbjct: 159 ALPVVDSEGNLVGIVDETDLLR-DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQ 217
Query: 166 --GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223
K V ++MT +V + + + A + + +LPV+ G G L+GLI ++++
Sbjct: 218 LPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 277
Query: 224 LQIK 227
++ K
Sbjct: 278 VKSK 281
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV------RA 222
V +MT P+ + A L + K R PVV+ GKLVG+I+ ++ +
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL 62
Query: 223 ALQIKRD 229
A+ +KRD
Sbjct: 63 AMLVKRD 69
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
+V D+++ P+ H N ++ +AA++L++ LP+VD +GKLVG+IT ++ +A Q K
Sbjct: 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
Query: 228 RDGER 232
+ E
Sbjct: 62 KTIEE 66
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 31/132 (23%)
Query: 90 TTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149
+ ++ EA + L++ I P++D+ KLVG+++ +D+
Sbjct: 16 SNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDI---------------------- 53
Query: 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGK 209
+ L++ N K + ++MT + HE+ ++ A + + +PVVD Y +
Sbjct: 54 --------AKALAQ-NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRR 104
Query: 210 LVGLITRGNVVR 221
+VG++T ++ R
Sbjct: 105 VVGIVTSEDISR 116
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227
+V D+++ P+ H N ++ +AA++L++ LP+VD +GKLVG+IT ++ +A Q K
Sbjct: 4 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
Query: 228 RDGER 232
+ E
Sbjct: 64 KTIEE 68
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 31/132 (23%)
Query: 90 TTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149
+ ++ EA + L++ I P++D+ KLVG+++ +D+
Sbjct: 18 SNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDI---------------------- 55
Query: 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGK 209
+ L++ N K + ++MT + HE+ ++ A + + +PVVD Y +
Sbjct: 56 --------AKALAQ-NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRR 106
Query: 210 LVGLITRGNVVR 221
+VG++T ++ R
Sbjct: 107 VVGIVTSEDISR 118
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 31/141 (21%)
Query: 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDT 141
+E++ +K +DEA+E + K + G P+++D+ +L+ ++++ D++
Sbjct: 91 EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI------------- 137
Query: 142 SLFPNVNSTWKTFNELQRLLSKTN-GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRR 200
+ LL K + +V+ D +T +V L+D AR ++ +RR
Sbjct: 138 ----------------RALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRR 181
Query: 201 LPVVDGYGKLVGLITRGNVVR 221
LPVV G+LVG+IT + ++
Sbjct: 182 LPVV-SEGRLVGIITSTDFIK 201
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 91 TTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149
TTT+ +AL + E + PV++ + K+VG+++ D++ D + GG++ + + +
Sbjct: 20 TTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV--DFMGGGSKYNLIREKHERN 77
Query: 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGK 209
NE R ++M + + EN ++++A L P+V+ +
Sbjct: 78 FLAAINEPVR-----------EIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQ 126
Query: 210 LVGLITRGNVVRAAL 224
L+ LIT +V+RA L
Sbjct: 127 LISLITERDVIRALL 141
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 87 AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
V+ T ++E ++R++E +T + D KLVG++ LL +SG + F
Sbjct: 28 VVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL---KVSGFH-----FFGF 79
Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
+ + ++RL++K +++ D P+ VH +T LE+A +L+++ + +PVVD
Sbjct: 80 IPKEELIRSSMKRLIAKNASEIMLD-----PVYVHMDTPLEEALKLMIDNNIQEMPVVDE 134
Query: 207 YGKLVG 212
G++VG
Sbjct: 135 KGEIVG 140
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V T ++EAL+ +++ I PV+D+ ++VG ++ ++L
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 34/125 (27%)
Query: 93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK 152
TV EA++ + E +I G PV+D++ +LVG++++ D+
Sbjct: 113 TVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV------------------------- 147
Query: 153 TFNELQRLLSKTNGKVVGDLMTPAP--LVVHENTNLEDAARLLLETKYRRLPVVDGYGKL 210
++ LSK + DLMTP +V + +LE A +L + + +LP+V KL
Sbjct: 148 ---RFEKNLSKK----IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKL 200
Query: 211 VGLIT 215
VGLIT
Sbjct: 201 VGLIT 205
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
+N + + D MT +E L ++++A E L + RI P++ D KLVG+++ D++
Sbjct: 151 KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM 210
Query: 129 AL 130
++
Sbjct: 211 SV 212
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 160 LLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNV 219
++ KT ++ D P+ V + +++A L+ E K LPVVD G+LVGL+T +V
Sbjct: 93 IVKKTENGIIYD-----PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 32/136 (23%)
Query: 96 EALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFN 155
EA E+ ++ +I+ PVIDD+ K++G+V+ D+ G N T +T
Sbjct: 29 EAFEKXLKYKISSLPVIDDENKVIGIVTTTDI-------GYN------LIRDKYTLET-- 73
Query: 156 ELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL-----LETKYRRLPVVDGYGKL 210
+GD+ T + +HE+ ++ +A + E +LPVVD KL
Sbjct: 74 ------------TIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKL 121
Query: 211 VGLITRGNVVRAALQI 226
VG+I+ G+++R +I
Sbjct: 122 VGIISDGDIIRTISKI 137
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERL-----VEKRITGFPVIDDDWKLVGVVSDYDLL 128
T+GD TK D+ + ++ EA+++ E+ I PV+D + KLVG++SD D++
Sbjct: 74 TIGDVXTK--DVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
+GD + ++++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L I
Sbjct: 182 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 239
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
GG ND SL + + ++ + + + T + +M D R
Sbjct: 240 KGGIYNDLSLSVG-EALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 282
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
+ + R VVD G+LVG++T ++++ L
Sbjct: 283 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 312
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
+GD + ++++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L I
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 246
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
GG ND SL + + ++ + + + T + +M D R
Sbjct: 247 KGGIYNDLSLSVG-EALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 289
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
+ + R VVD G+LVG++T ++++ L
Sbjct: 290 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 319
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
+GD + ++++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L I
Sbjct: 10 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 67
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
GG ND SL + + ++ + + + T + +M D R
Sbjct: 68 KGGIYNDLSLSVG-EALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 110
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
+ + R VVD G+LVG++T ++++ L
Sbjct: 111 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 140
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
+GD + +++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L I
Sbjct: 10 IGDLNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 67
Query: 134 SGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLL 193
GG ND SL + + ++ + + + T +N L +
Sbjct: 68 KGGIYNDLSLSVG-EALXRRSDDFEGVYTCT-----------------KNDKLSTIXDNI 109
Query: 194 LETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
+ + R VVD G+LVG++T ++++ L
Sbjct: 110 RKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 186 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 245
Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
+ L + N D S+ + F + + +HE LE
Sbjct: 246 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHE--TLE 285
Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
L+E + RL VVD + + G+++ ++++A
Sbjct: 286 AIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 320
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
V ++M P + V +T+ E+ ARL+ + + LPVVD G+LVG++T +V+
Sbjct: 201 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+T T +E + + T PV+D++ +LVG+V+ D+L
Sbjct: 212 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
V ++M P + V +T+ E+ ARL+ + + LPVVD G+LVG++T +V+
Sbjct: 221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+T T +E + + T PV+D++ +LVG+V+ D+L
Sbjct: 232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 32/161 (19%)
Query: 68 PRNGTYTVGDFMTKKED----LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
P + + TV + K D ++ V V +A++ + EK I V+D D + G+V+
Sbjct: 2 PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVT 60
Query: 124 DYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHEN 183
+ D + LQ SK V ++MT V +
Sbjct: 61 ERD------------------------YARKVVLQERSSKATR--VEEIMTAKVRYVEPS 94
Query: 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
+ ++ L+ E + R LPV+DG GKL+GLI+ G++V++ +
Sbjct: 95 QSTDECMALMTEHRMRHLPVLDG-GKLIGLISIGDLVKSVI 134
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 33/124 (26%)
Query: 94 VDEALERLVEKRITGFPVIDD--DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151
V EA E RI+G P+++ + KLVG++++ D
Sbjct: 109 VSEAEELXQRYRISGVPIVETLANRKLVGIITNRD------------------------- 143
Query: 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLV 211
R +S N + + + T+LE A R+L E + +LP+VD G+L
Sbjct: 144 ------XRFISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLS 197
Query: 212 GLIT 215
GLIT
Sbjct: 198 GLIT 201
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
+ L + N D S+ + F + + +HE LE
Sbjct: 74 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHE--TLE 113
Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
L+E + RL VVD + G+++ ++++A
Sbjct: 114 TIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 148
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 150 TWKTFNELQRLLSK-TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYG 208
T + F+ LL K V ++MT V N ED L+ E + R LPV+D G
Sbjct: 56 TERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD-G 114
Query: 209 KLVGLITRGNVVRAAL 224
K++GL++ G++V+ A+
Sbjct: 115 KVIGLLSIGDLVKDAI 130
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
+ L + N D S+ + F + + +HE LE
Sbjct: 74 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHE--TLE 113
Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
L+E + +L VVD + G+++ ++++A
Sbjct: 114 TIINRLVEAEVHQLVVVDENDVVKGIVSLSDILQA 148
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 36/121 (29%)
Query: 99 ERLVEK-RITGFPVID--DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFN 155
E L+ K RI+G PV++ D+ KLVG++++ D+
Sbjct: 136 EHLMGKYRISGVPVVNNLDERKLVGIITNRDM---------------------------- 167
Query: 156 ELQRLLSKTNGKVVGDLMTPAPLVVHE-NTNLEDAARLLLETKYRRLPVVDGYGKLVGLI 214
R + + K+ D+MT L+ T L +A ++L + K +LP+VD G L GLI
Sbjct: 168 ---RFIQDYSIKI-SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223
Query: 215 T 215
T
Sbjct: 224 T 224
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+ D MTK E L TT+ EA + L + +I P++D++ L G+++ D+
Sbjct: 177 ISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
V ++ P + V +T+ E+ ARL + + LPVVD G+LVG++T +V+
Sbjct: 201 VAEIXNPKVVYVRTDTDQEEVARLXADYDFTVLPVVDEEGRLVGIVTVDDVL 252
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 27/135 (20%)
Query: 87 AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
V T+ A + + E I P+ DD +L G+++D D++ + ++ G L PN
Sbjct: 20 CVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV-IKGLAAG------LDPN 72
Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
+ G+L + V N ++++ ++ E + RR+PV+
Sbjct: 73 TATA-------------------GELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE 113
Query: 207 YGKLVGLITRGNVVR 221
+ +LVG++T ++ R
Sbjct: 114 H-RLVGIVTEADIAR 127
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 171 DLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
D++T + V E+ L+ A+ LE + PVVD G LVG+IT + +R ++
Sbjct: 22 DILTSPVVTVREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFLRGSI 75
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+ T+D + +E +I PV+D + LVG++++ D L
Sbjct: 31 VREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFL 71
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 128 LALDSISGGNQNDTSL 143
+ L + N D S+
Sbjct: 74 INLAAEKTYNNLDVSV 89
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 171 DLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
D++T + V E+ L+ A+ LE + PVVD G LVG+IT + +R ++
Sbjct: 22 DILTSPVVTVREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFLRGSI 75
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+ T+D + +E +I PV+D + LVG++++ D L
Sbjct: 31 VREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFL 71
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
D++ K++L AV T V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 186 LEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
+ED + ET+Y PV+D K+VG I R +++
Sbjct: 205 VEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
D++ K++L AV T V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 185 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 237
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 186 LEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220
+ED + ET+Y PV+D K+VG I R +++
Sbjct: 202 VEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 236
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 186 LEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
LE A LL ETK +LP+VD G LV L+ R ++++
Sbjct: 219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLK 254
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 186 LEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
LE A LL ETK +LP+VD G LV L+ R ++++
Sbjct: 219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLK 254
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD--S 132
V D MT+ H + T T+++A + I P++D + KL+G+VS DLLA S
Sbjct: 7 VEDMMTRHP--HTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS 64
Query: 133 ISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARL 192
+ Q D+ F ++ + D+ + AP L+++A
Sbjct: 65 LQRSAQGDSLAFE--TPLFEVMH--------------TDVTSVAP-----QAGLKESAIY 103
Query: 193 LLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDGERS 233
+ + K LPVV LVG+IT + V A+ + E S
Sbjct: 104 MQKHKIGCLPVV-AKDVLVGIITDSDFVTIAINLLELQEES 143
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 161 LSKTNGKVVGDLMTPAPLVV--HENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGN 218
L++T KV D+MTP +V H++T L +A +++ E K LP++D L ++ R +
Sbjct: 156 LTQTETKV-SDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKD 214
Query: 219 VVRAAL 224
R+ +
Sbjct: 215 YDRSQV 220
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYD 126
V D MT L T + EA + + EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 161 LSKTNGKVVGDLMTPAPLVV--HENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGN 218
L++T KV D+MTP +V H++T L +A +++ E K LP++D L ++ R +
Sbjct: 156 LTQTETKV-SDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKD 214
Query: 219 VVRAAL 224
R+ +
Sbjct: 215 YDRSQV 220
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYD 126
V D MT L T + EA + + EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
pdb|1Y5H|B Chain B, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
Length = 133
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 27/135 (20%)
Query: 87 AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPN 146
V T+ A + E I P+ DD +L G ++D D++ + ++ G L PN
Sbjct: 20 CVGEHETLTAAAQYXREHDIGALPICGDDDRLHGXLTDRDIV-IKGLAAG------LDPN 72
Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
+ G+L + V N ++++ + E + RR+PV+
Sbjct: 73 TATA-------------------GELARDSIYYVDANASIQEXLNVXEEHQVRRVPVISE 113
Query: 207 YGKLVGLITRGNVVR 221
+ +LVG++T ++ R
Sbjct: 114 H-RLVGIVTEADIAR 127
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 30 PITVATPSHLSKRLRFFTVSREVKAFAHNG---------VGITNS----VPPRNGTYTVG 76
P+TV TPS +K + ++RE + +G VGI V P G TV
Sbjct: 118 PVTV-TPS--TKIIELLQMARE---YGFSGFPVVEQGELVGIVTGRDLRVKPNAGD-TVA 170
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
MT K+ L + T ++E +L E RI V+D+++ L G+V+ D+
Sbjct: 171 AIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 221
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 35/137 (25%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
V +T + E L+ E +GFPV++ +LVG+V+ DL + PN
Sbjct: 121 VTPSTKIIELLQMAREYGFSGFPVVEQ-GELVGIVTGRDL--------------RVKPNA 165
Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVV--HENTNLEDAARLLLETKYRRLPVVD 205
T V +MTP +V E T LE+ L E + ++ VVD
Sbjct: 166 GDT------------------VAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD 207
Query: 206 GYGKLVGLITRGNVVRA 222
L GL+T ++ +A
Sbjct: 208 ENFYLRGLVTFRDIEKA 224
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 30 PITVATPSHLSKRLRFFTVSREVKAFAHNG---------VGITNS----VPPRNGTYTVG 76
P+TV TPS +K + ++RE + +G VGI V P G TV
Sbjct: 98 PVTV-TPS--TKIIELLQMARE---YGFSGFPVVEQGELVGIVTGRDLRVKPNAGD-TVA 150
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
MT K+ L + T ++E +L E RI V+D+++ L G+V+ D+
Sbjct: 151 AIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 201
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 35/137 (25%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147
V +T + E L+ E +GFPV++ +LVG+V+ DL + PN
Sbjct: 101 VTPSTKIIELLQMAREYGFSGFPVVEQ-GELVGIVTGRDL--------------RVKPNA 145
Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVV--HENTNLEDAARLLLETKYRRLPVVD 205
T V +MTP +V E T LE+ L E + ++ VVD
Sbjct: 146 GDT------------------VAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD 187
Query: 206 GYGKLVGLITRGNVVRA 222
L GL+T ++ +A
Sbjct: 188 ENFYLRGLVTFRDIEKA 204
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
P+V+HEN ++ DA + L VVD LVG+++R +++RA++
Sbjct: 26 PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI 73
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+ MTK+EDL T+ EA E L + P++++D +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDL 227
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 35/114 (30%)
Query: 105 RITGFPVID--DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162
RI+G PV++ D+ KLVG++++ D R +
Sbjct: 143 RISGVPVVNNLDERKLVGIITNRD-------------------------------XRFIQ 171
Query: 163 KTNGKVVGDLMTPAPLVVHE-NTNLEDAARLLLETKYRRLPVVDGYGKLVGLIT 215
+ K+ D+ T L+ T L +A ++L + K +LP+VD G L GLIT
Sbjct: 172 DYSIKI-SDVXTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLIT 224
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF 144
L AVK TV EA L R P++D DW++ YD L GN+N T+
Sbjct: 679 LGAVKLPNTVREAYLNLSWSRKEATPLVDTDWEVA-----YDQFVL----AGNKNTTAYR 729
Query: 145 P 145
P
Sbjct: 730 P 730
>pdb|3LQN|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Of
Unknown Function From Bacillus Anthracis Str. Ames
Ancestor
Length = 150
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 169 VGDLMTPAPLVVHENTN--LEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
V DLM + V H LE A +L+++ Y +PV+D KL GLI+ ++ L +
Sbjct: 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL 76
Query: 227 KR 228
+R
Sbjct: 77 ER 78
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
V D M E + V+ ++ AL LV+ + PV+D +KL G++S + LD I
Sbjct: 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTA--MILDGIL 74
Query: 135 G 135
G
Sbjct: 75 G 75
>pdb|1YAV|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
pdb|1YAV|B Chain B, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
Length = 159
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 169 VGDLMTPAPLVVHENT--NLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226
VG M A V H NLE A +L +T Y +PV+D +L GLI ++ + +
Sbjct: 16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL 75
Query: 227 KR 228
+R
Sbjct: 76 ER 77
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
TVG FM + + + V+ ++ AL L + T PV+D ++L G++ + ++SI
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN--MIMNSI 72
Query: 134 SG 135
G
Sbjct: 73 FG 74
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+ MTK+EDL T+ EA E L + P+++++ +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDL 227
>pdb|3OCO|A Chain A, The Crystal Structure Of A Hemolysin-Like Protein
Containing Cbs Domain Of Oenococcus Oeni Psu
pdb|3OCO|B Chain B, The Crystal Structure Of A Hemolysin-Like Protein
Containing Cbs Domain Of Oenococcus Oeni Psu
Length = 153
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 148 NSTWKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVV- 204
N+ + N QR + N KV D+ + VV + + DA L LE +Y R PV
Sbjct: 2 NADEEDANFXQRAF-EXNDKVASDVXVDRTSXSVVDVDETIADALLLYLEEQYSRFPVTA 60
Query: 205 -DGYGKLVGLITRGNVVRAA 223
+ K++G ++VR A
Sbjct: 61 DNDKDKIIGYAYNYDIVRQA 80
>pdb|3K6E|A Chain A, Crystal Structure Of Cbs Domain Protein From Streptococcus
Pneumoniae Tigr4
pdb|3K6E|B Chain B, Crystal Structure Of Cbs Domain Protein From Streptococcus
Pneumoniae Tigr4
Length = 156
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGN 137
F+T ++L + T D A L + T PV+ D+ + VG + D+ A
Sbjct: 20 FLTPAKNLAVLIDTHNADHATLLLSQXTYTRVPVVTDEKQFVGTIGLRDIXAYQX----- 74
Query: 138 QNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETK 197
++D S Q + + T+ +V T +V + T E +L+ E+
Sbjct: 75 EHDLS---------------QEIXADTD--IVHXTKTDVAVVSPDFTITEVLHKLVDES- 116
Query: 198 YRRLPVVDGYGKLVGLITRGNVVRA 222
LPVVD G G+ITR ++++A
Sbjct: 117 --FLPVVDAEGIFQGIITRKSILKA 139
>pdb|3KXR|A Chain A, Structure Of The Cystathionine Beta-Synthase Pair Domain
Of The Putative Mg2+ Transporter So5017 From Shewanella
Oneidensis Mr-1
Length = 205
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 183 NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRD 229
NT L DAA + ++ LPV+D G+L+G +T +RAA + R+
Sbjct: 132 NTTLLDAAEAIEHSREIELPVIDDAGELIGRVT----LRAATALVRE 174
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
ED A+ TT+ +A E + R PVIDD +L+G V+
Sbjct: 124 EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVT 164
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 28/152 (18%)
Query: 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQND 140
K D+ V ++ EA L +I V D D ++G+ ++ DL+ +++G Q
Sbjct: 33 KGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV--KAVAG--QGA 88
Query: 141 TSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRR 200
SL +V+ MT + N+ + ++ ++R
Sbjct: 89 ASLQQSVSVA----------------------MTKNVVRCQHNSTTDQLMEIMTGGRFRH 126
Query: 201 LPVVDGYGKLVGLITRGNVVRAAL-QIKRDGE 231
+PV + G+L G+I+ G+VV+A + +I+ + E
Sbjct: 127 VPVEE-NGRLAGIISIGDVVKARIGEIEAEAE 157
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 171 DLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222
+ T + + + E++ + A L + R LPVVD G L G+I+ ++ RA
Sbjct: 71 EFXTASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRA 122
>pdb|1VR9|A Chain A, Crystal Structure Of A Cbs Domain Pair/act Domain Protein
(tm0892) From Thermotoga Maritima At 1.70 A Resolution
pdb|1VR9|B Chain B, Crystal Structure Of A Cbs Domain Pair/act Domain Protein
(tm0892) From Thermotoga Maritima At 1.70 A Resolution
Length = 213
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 178 LVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225
VHE N+ A L LE + LPVVD +L G ++ + + A ++
Sbjct: 83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEXRLKGAVSLHDFLEALIE 130
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 126 DLLALDSISGGNQNDTSLFPNVNSTWKTFNELQR----------LLSKTNGKVVGDLMTP 175
D + + + N+ +SL+PN WK +++ + + GK++ D ++
Sbjct: 196 DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISS 255
Query: 176 APLVVHENTNLEDAARLLLETKYRRL 201
+ + + N + + +L+TKY+ L
Sbjct: 256 SLIFISANKDFYNYDNYILDTKYKNL 281
>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein
Corc, Northeast Structural Genomics Consortium (nesg)
Target Er40
Length = 292
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 31/134 (23%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLV-GVVSDYDLLALDSISGGNQNDTSLFPN 146
+K T+DE L+ ++E + FPVI +D + G++ DLL P
Sbjct: 82 LKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL----------------PF 125
Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
S + F+ D + +VV E+ ++ + +Y V+D
Sbjct: 126 XRSDAEAFSX--------------DKVLRQAVVVPESKRVDRXLKEFRSQRYHXAIVIDE 171
Query: 207 YGKLVGLITRGNVV 220
+G + GL+T +++
Sbjct: 172 FGGVSGLVTIEDIL 185
>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|B Chain B, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|C Chain C, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|D Chain D, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
Length = 127
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 31/134 (23%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLV-GVVSDYDLLALDSISGGNQNDTSLFPN 146
+K T+DE L+ ++E + FPVI +D + G++ DLL P
Sbjct: 18 LKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL----------------PF 61
Query: 147 VNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG 206
S + F+ D + +VV E+ ++ + +Y V+D
Sbjct: 62 XRSDAEAFS--------------XDKVLRTAVVVPESKRVDRXLKEFRSQRYHXAIVIDE 107
Query: 207 YGKLVGLITRGNVV 220
+G + GL+T +++
Sbjct: 108 FGGVSGLVTIEDIL 121
>pdb|2EMQ|A Chain A, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
pdb|2EMQ|B Chain B, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
Length = 157
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVH-ENTNLEDAARLLL-ETKYRRLPVVDGY 207
TW+ NE ++ V + PA V H + N D A L+L +T Y +PV+D
Sbjct: 2 TWE-HNEFMQM-------TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS 53
Query: 208 GKLVGLITRGNVVRAALQIKR 228
KL GLI+ ++ A L ++R
Sbjct: 54 YKLHGLISMTMMMDAILGLER 74
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
TV F+ + + V+ +D AL L + + PV+D +KL G++S + +D+I
Sbjct: 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLIS--MTMMMDAI 69
Query: 134 SG 135
G
Sbjct: 70 LG 71
>pdb|1A3Z|A Chain A, Reduced Rusticyanin At 1.9 Angstroms
Length = 155
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 147 VNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
++STWK T +++ +L K +GKV GD +T + VH
Sbjct: 3 LDSTWKEATLPQVKAMLEKDDGKVSGDTVTYSGKTVH 39
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLL 128
+K+ TV EA+ + + R+ PV+D DD ++GVV L+
Sbjct: 398 LKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI 439
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 26/154 (16%)
Query: 68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
PR G + + V TTV +A++ + E + G V DD+ VG++S+
Sbjct: 2 PRGGHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSE--- 58
Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
S K F + + ++V + P P V + +++
Sbjct: 59 --------------------RSIIKRFIPRNKKPDEVPIRLV--MRKPIPKV-KSDYDVK 95
Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
D A L E R VVD G++VG++T ++ R
Sbjct: 96 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 129
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 26/154 (16%)
Query: 68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
PR G + + V TTV +A++ + E + G V DD+ VG++S+
Sbjct: 16 PRGGHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSE--- 72
Query: 128 LALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLE 187
S K F + + ++V + P P V + +++
Sbjct: 73 --------------------RSIIKRFIPRNKKPDEVPIRLV--MRKPIPKV-KSDYDVK 109
Query: 188 DAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221
D A L E R VVD G++VG++T ++ R
Sbjct: 110 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 143
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 178 LVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224
L V +T++++A+RL E L V++ G +VG T+ +++R +
Sbjct: 18 LGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVI 64
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
+ TKK L VK +T+V EA E + VI+DD +VG + D++
Sbjct: 12 YXTKK--LLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDII 60
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 12 LARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNG 71
++R+N+ G + P Q P V T ++ + +TV R + A +T +P RNG
Sbjct: 228 VSRINSFGYLYGTPGFQAPEIVRTGPTVATDI--YTVGRTLAA-------LTLDLPTRNG 278
Query: 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVE 103
Y G ED +KT + L R ++
Sbjct: 279 RYVDG----LPEDDPVLKTYDSYGRLLRRAID 306
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 171 DLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITR 216
D TP P+ V+ ++ A + + + LPVVD K VG++T
Sbjct: 97 DYXTPNPVTVYNTSDEFTAINIXVTRNFGSLPVVDINDKPVGIVTE 142
>pdb|2FOM|B Chain B, Dengue Virus Ns2bNS3 PROTEASE
Length = 185
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 146 NVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVD 205
+ WK E+Q +L+ GK + T P + NT A L P+VD
Sbjct: 84 KLEGEWKEGEEVQ-VLALEPGKNPRAVQT-KPGLFKTNTGTIGAVSLDFSPGTSGSPIVD 141
Query: 206 GYGKLVGLITRGNVVRAALQI 226
GK+VGL G V R+ +
Sbjct: 142 KKGKVVGLYGNGVVTRSGAYV 162
>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae.
pdb|3K2V|B Chain B, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae
Length = 149
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
V D +++ V T+ +AL + K + + DDD ++G+ +D DL
Sbjct: 30 VNDIXHTGDEIPHVGLQATLRDALLEITRKNLGXTAICDDDXNIIGIFTDGDL 82
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 146 NVNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
+++TWK T +++ +L K GKV GD +T + VH
Sbjct: 2 TLDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVH 39
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 147 VNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
+++TWK T +++ +L K GKV GD +T + VH
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVH 38
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 147 VNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
+++TWK T +++ +L K GKV GD +T + VH
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVH 39
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 147 VNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
+++TWK T +++ +L K GKV GD +T + VH
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVH 39
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 147 VNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
+++TWK T +++ +L K GKV GD +T + VH
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVH 39
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 147 VNSTWK--TFNELQRLLSKTNGKVVGDLMTPAPLVVH 181
+++TWK T +++ +L K GKV GD +T + VH
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVH 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,090,565
Number of Sequences: 62578
Number of extensions: 298638
Number of successful extensions: 858
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 160
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)