Query 026712
Match_columns 234
No_of_seqs 196 out of 1840
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 5.6E-20 1.2E-24 146.4 12.4 124 70-225 169-292 (294)
2 COG3448 CBS-domain-containing 99.8 1.4E-18 3.1E-23 141.0 12.6 138 69-230 241-378 (382)
3 PRK11543 gutQ D-arabinose 5-ph 99.7 2.7E-17 5.8E-22 140.6 13.2 121 72-222 196-318 (321)
4 cd04603 CBS_pair_KefB_assoc Th 99.7 5E-17 1.1E-21 117.3 12.6 109 84-221 2-110 (111)
5 cd04619 CBS_pair_6 The CBS dom 99.7 6.5E-17 1.4E-21 117.2 13.2 112 84-221 2-113 (114)
6 cd04641 CBS_pair_28 The CBS do 99.7 9.8E-17 2.1E-21 117.3 12.8 119 84-222 2-120 (120)
7 COG3620 Predicted transcriptio 99.7 4E-17 8.7E-22 121.2 10.0 124 71-226 63-186 (187)
8 cd04618 CBS_pair_5 The CBS dom 99.7 1.1E-16 2.3E-21 113.4 11.5 94 84-221 2-97 (98)
9 PRK10892 D-arabinose 5-phospha 99.7 1.2E-16 2.5E-21 137.0 13.7 124 71-222 200-323 (326)
10 COG4109 Predicted transcriptio 99.7 7.3E-17 1.6E-21 133.9 11.8 127 71-230 186-312 (432)
11 cd04596 CBS_pair_DRTGG_assoc T 99.7 2.3E-16 5E-21 113.1 12.7 105 84-221 3-107 (108)
12 cd04617 CBS_pair_4 The CBS dom 99.7 2.6E-16 5.7E-21 114.7 12.8 111 84-221 2-117 (118)
13 PRK07807 inosine 5-monophospha 99.7 1.9E-16 4.2E-21 140.8 14.0 122 70-226 86-207 (479)
14 PRK15094 magnesium/cobalt effl 99.7 3.1E-16 6.8E-21 131.8 13.1 128 70-227 64-192 (292)
15 PRK01862 putative voltage-gate 99.7 2.3E-16 5E-21 144.6 13.2 130 68-226 442-573 (574)
16 cd04600 CBS_pair_HPP_assoc Thi 99.7 5.1E-16 1.1E-20 113.8 12.6 121 84-221 3-123 (124)
17 cd04593 CBS_pair_EriC_assoc_ba 99.7 6.5E-16 1.4E-20 111.9 13.0 111 84-221 2-114 (115)
18 cd04623 CBS_pair_10 The CBS do 99.7 9.5E-16 2.1E-20 110.3 13.5 111 84-221 2-112 (113)
19 cd04630 CBS_pair_17 The CBS do 99.7 8.9E-16 1.9E-20 111.1 13.4 111 84-221 2-113 (114)
20 cd04607 CBS_pair_NTP_transfera 99.7 9.8E-16 2.1E-20 110.6 13.5 109 85-221 4-112 (113)
21 cd04582 CBS_pair_ABC_OpuCA_ass 99.7 9.8E-16 2.1E-20 109.2 13.1 104 84-221 2-105 (106)
22 cd04639 CBS_pair_26 The CBS do 99.7 7.8E-16 1.7E-20 110.6 12.4 109 84-221 2-110 (111)
23 cd04583 CBS_pair_ABC_OpuCA_ass 99.7 1.4E-15 3.1E-20 108.7 13.4 106 84-221 3-108 (109)
24 cd04605 CBS_pair_MET2_assoc Th 99.7 2E-15 4.4E-20 108.3 13.8 107 84-221 3-109 (110)
25 cd04624 CBS_pair_11 The CBS do 99.7 2E-15 4.4E-20 108.6 13.6 110 84-221 2-111 (112)
26 cd04608 CBS_pair_PALP_assoc Th 99.7 2.8E-16 6.1E-21 115.9 9.2 113 84-223 3-124 (124)
27 cd04801 CBS_pair_M50_like This 99.7 1E-15 2.2E-20 110.7 12.0 109 84-221 2-113 (114)
28 TIGR03520 GldE gliding motilit 99.7 9.4E-16 2E-20 134.7 13.8 125 70-226 188-313 (408)
29 TIGR00400 mgtE Mg2+ transporte 99.7 1E-15 2.2E-20 136.2 14.1 124 70-228 128-256 (449)
30 cd04615 CBS_pair_2 The CBS dom 99.7 1.7E-15 3.8E-20 109.2 12.8 110 85-221 3-112 (113)
31 cd04614 CBS_pair_1 The CBS dom 99.7 1.8E-15 3.9E-20 106.6 12.6 94 84-221 2-95 (96)
32 cd04803 CBS_pair_15 The CBS do 99.7 1.7E-15 3.8E-20 110.7 12.8 121 84-222 2-122 (122)
33 cd04642 CBS_pair_29 The CBS do 99.7 2.1E-15 4.5E-20 111.2 13.3 124 84-221 2-125 (126)
34 cd04621 CBS_pair_8 The CBS dom 99.7 1.9E-15 4.1E-20 113.2 13.0 132 84-221 2-134 (135)
35 cd04629 CBS_pair_16 The CBS do 99.7 1.3E-15 2.9E-20 109.8 11.8 112 84-221 2-113 (114)
36 cd04606 CBS_pair_Mg_transporte 99.7 1.2E-15 2.6E-20 109.6 11.4 102 88-222 2-108 (109)
37 cd04643 CBS_pair_30 The CBS do 99.7 1.4E-15 3.1E-20 110.0 11.9 114 84-221 2-115 (116)
38 cd04627 CBS_pair_14 The CBS do 99.7 1.8E-15 3.9E-20 111.1 12.1 119 84-220 2-121 (123)
39 cd04636 CBS_pair_23 The CBS do 99.7 4.3E-15 9.3E-20 110.4 14.0 131 84-222 2-132 (132)
40 cd04613 CBS_pair_SpoIVFB_EriC_ 99.7 2.5E-15 5.4E-20 108.3 12.2 111 84-221 2-113 (114)
41 cd04626 CBS_pair_13 The CBS do 99.7 2.8E-15 6.1E-20 107.8 12.0 109 84-221 2-110 (111)
42 cd04631 CBS_pair_18 The CBS do 99.6 2.7E-15 5.9E-20 110.1 12.1 123 84-222 2-125 (125)
43 cd04610 CBS_pair_ParBc_assoc T 99.6 3.9E-15 8.5E-20 106.2 12.5 104 84-221 3-106 (107)
44 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 4.1E-15 8.9E-20 107.2 12.7 111 84-221 3-113 (114)
45 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 5.4E-15 1.2E-19 106.1 13.1 109 84-221 2-110 (111)
46 cd04635 CBS_pair_22 The CBS do 99.6 4.6E-15 9.9E-20 108.4 12.8 120 84-221 2-121 (122)
47 cd04601 CBS_pair_IMPDH This cd 99.6 4.3E-15 9.3E-20 106.4 12.1 106 84-221 3-109 (110)
48 cd04800 CBS_pair_CAP-ED_DUF294 99.6 6.7E-15 1.5E-19 105.7 13.1 109 84-221 2-110 (111)
49 cd04588 CBS_pair_CAP-ED_DUF294 99.6 7.7E-15 1.7E-19 105.2 13.4 108 84-221 2-109 (110)
50 COG2905 Predicted signal-trans 99.6 1.3E-15 2.8E-20 133.5 11.0 125 70-224 146-270 (610)
51 cd04599 CBS_pair_GGDEF_assoc2 99.6 6.2E-15 1.4E-19 104.7 12.7 103 84-221 2-104 (105)
52 cd04602 CBS_pair_IMPDH_2 This 99.6 5.5E-15 1.2E-19 107.0 12.5 106 84-221 3-113 (114)
53 cd04595 CBS_pair_DHH_polyA_Pol 99.6 7.3E-15 1.6E-19 105.5 12.8 107 84-221 3-109 (110)
54 cd04620 CBS_pair_7 The CBS dom 99.6 7.8E-15 1.7E-19 106.1 13.1 110 84-221 2-114 (115)
55 cd04589 CBS_pair_CAP-ED_DUF294 99.6 8.5E-15 1.8E-19 105.3 13.0 110 84-222 2-111 (111)
56 cd04590 CBS_pair_CorC_HlyC_ass 99.6 6.4E-15 1.4E-19 105.8 12.4 108 84-221 2-110 (111)
57 cd04587 CBS_pair_CAP-ED_DUF294 99.6 8E-15 1.7E-19 105.6 12.9 111 84-221 2-112 (113)
58 cd04586 CBS_pair_BON_assoc Thi 99.6 3.6E-15 7.8E-20 111.3 11.3 128 84-221 3-134 (135)
59 cd04640 CBS_pair_27 The CBS do 99.6 4.3E-15 9.3E-20 109.6 11.3 114 84-221 2-125 (126)
60 cd04632 CBS_pair_19 The CBS do 99.6 1E-14 2.2E-19 107.7 13.1 124 84-221 2-127 (128)
61 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 1.2E-14 2.6E-19 104.3 12.8 109 84-221 2-110 (111)
62 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 6E-15 1.3E-19 131.1 13.5 121 70-226 85-205 (475)
63 cd04585 CBS_pair_ACT_assoc2 Th 99.6 1.3E-14 2.7E-19 105.7 12.8 120 84-221 2-121 (122)
64 PRK07107 inosine 5-monophospha 99.6 5.3E-15 1.1E-19 132.3 12.5 119 74-223 95-219 (502)
65 cd04594 CBS_pair_EriC_assoc_ar 99.6 1.6E-14 3.4E-19 102.9 12.6 100 86-221 4-103 (104)
66 cd04622 CBS_pair_9 The CBS dom 99.6 2.5E-14 5.4E-19 103.0 13.5 111 84-221 2-112 (113)
67 cd04625 CBS_pair_12 The CBS do 99.6 1.9E-14 4.1E-19 103.5 12.8 110 84-221 2-111 (112)
68 TIGR00393 kpsF KpsF/GutQ famil 99.6 7.7E-15 1.7E-19 122.3 11.8 114 72-215 154-268 (268)
69 cd04609 CBS_pair_PALP_assoc2 T 99.6 1.7E-14 3.6E-19 103.2 11.9 109 84-222 2-110 (110)
70 cd04637 CBS_pair_24 The CBS do 99.6 1.4E-14 3E-19 105.9 11.7 121 84-222 2-122 (122)
71 cd04633 CBS_pair_20 The CBS do 99.6 1.4E-14 3.1E-19 105.6 11.4 120 84-222 2-121 (121)
72 TIGR01302 IMP_dehydrog inosine 99.6 1.4E-14 3E-19 128.8 13.4 119 72-224 79-201 (450)
73 cd04802 CBS_pair_3 The CBS dom 99.6 5.1E-14 1.1E-18 101.3 13.4 110 84-221 2-111 (112)
74 PRK05567 inosine 5'-monophosph 99.6 2.4E-14 5.2E-19 128.5 13.8 117 74-224 88-205 (486)
75 PLN02274 inosine-5'-monophosph 99.6 3.4E-14 7.3E-19 127.4 13.9 113 79-225 106-223 (505)
76 cd04584 CBS_pair_ACT_assoc Thi 99.6 5.3E-14 1.2E-18 102.5 12.4 119 84-221 2-120 (121)
77 cd04638 CBS_pair_25 The CBS do 99.6 7.7E-14 1.7E-18 99.5 13.0 104 84-221 2-105 (106)
78 cd02205 CBS_pair The CBS domai 99.6 8.3E-14 1.8E-18 99.2 12.8 111 84-221 2-112 (113)
79 cd04591 CBS_pair_EriC_assoc_eu 99.6 5.3E-14 1.2E-18 100.6 11.2 100 84-222 3-105 (105)
80 PTZ00314 inosine-5'-monophosph 99.6 4.6E-14 9.9E-19 126.5 12.9 117 74-224 97-218 (495)
81 TIGR01137 cysta_beta cystathio 99.6 5.6E-14 1.2E-18 125.5 13.4 122 70-223 332-453 (454)
82 cd04634 CBS_pair_21 The CBS do 99.6 1.7E-13 3.7E-18 103.4 14.2 136 84-221 2-142 (143)
83 PRK11573 hypothetical protein; 99.6 7.6E-14 1.7E-18 122.7 13.7 130 70-227 184-314 (413)
84 cd04598 CBS_pair_GGDEF_assoc T 99.5 1.7E-13 3.8E-18 99.5 11.9 113 84-221 2-118 (119)
85 PRK14869 putative manganese-de 99.5 1.5E-13 3.2E-18 125.5 14.1 151 72-224 67-304 (546)
86 COG2239 MgtE Mg/Co/Ni transpor 99.5 1E-13 2.2E-18 121.9 11.9 125 70-229 129-258 (451)
87 COG0517 FOG: CBS domain [Gener 99.5 5.2E-13 1.1E-17 96.5 13.2 113 77-220 3-117 (117)
88 COG1253 TlyC Hemolysins and re 99.5 4.1E-13 9E-18 118.9 14.4 129 70-228 203-332 (429)
89 cd04592 CBS_pair_EriC_assoc_eu 99.4 1E-11 2.2E-16 92.8 11.1 109 84-208 2-119 (133)
90 COG4536 CorB Putative Mg2+ and 99.4 4.5E-12 9.8E-17 106.6 9.9 129 70-228 197-328 (423)
91 KOG1764 5'-AMP-activated prote 99.3 7.2E-11 1.6E-15 102.6 12.1 126 84-228 238-363 (381)
92 PF00571 CBS: CBS domain CBS d 99.2 3E-11 6.5E-16 76.5 7.1 56 169-224 1-56 (57)
93 KOG0474 Cl- channel CLC-7 and 99.2 7.4E-11 1.6E-15 104.9 7.1 168 54-223 563-746 (762)
94 COG4535 CorC Putative Mg2+ and 99.1 1.3E-10 2.8E-15 92.2 7.4 128 71-228 65-193 (293)
95 PF00571 CBS: CBS domain CBS d 99.1 1.2E-10 2.7E-15 73.6 5.9 55 75-131 1-55 (57)
96 TIGR01186 proV glycine betaine 99.1 2.6E-09 5.7E-14 92.5 13.9 109 85-226 252-360 (363)
97 PRK10070 glycine betaine trans 99.1 2.8E-09 6E-14 93.5 13.4 121 73-226 274-395 (400)
98 KOG2550 IMP dehydrogenase/GMP 99.0 5.9E-10 1.3E-14 94.8 7.6 108 84-223 117-227 (503)
99 cd04597 CBS_pair_DRTGG_assoc2 98.8 4.9E-09 1.1E-13 75.9 3.7 55 73-129 58-112 (113)
100 TIGR00400 mgtE Mg2+ transporte 98.8 2.7E-09 5.8E-14 95.2 2.2 115 72-226 194-308 (449)
101 cd04603 CBS_pair_KefB_assoc Th 98.6 9.6E-08 2.1E-12 68.5 6.5 56 72-129 55-110 (111)
102 PRK05567 inosine 5'-monophosph 98.6 2.2E-07 4.7E-12 83.8 9.9 117 72-221 146-264 (486)
103 PRK14869 putative manganese-de 98.6 1.5E-08 3.4E-13 92.6 2.3 144 71-222 244-391 (546)
104 COG3448 CBS-domain-containing 98.6 1.3E-07 2.8E-12 77.7 6.7 65 157-221 235-299 (382)
105 COG2524 Predicted transcriptio 98.6 1.2E-07 2.5E-12 76.5 6.1 62 164-226 169-230 (294)
106 PRK07107 inosine 5-monophospha 98.6 5.4E-07 1.2E-11 81.2 10.7 110 18-130 101-218 (502)
107 PRK07807 inosine 5-monophospha 98.5 9.3E-07 2E-11 79.2 10.9 57 73-131 148-204 (479)
108 cd04619 CBS_pair_6 The CBS dom 98.5 3.6E-07 7.7E-12 65.7 6.5 58 70-129 56-113 (114)
109 COG3620 Predicted transcriptio 98.5 5.2E-07 1.1E-11 67.7 7.2 79 148-227 44-124 (187)
110 cd04597 CBS_pair_DRTGG_assoc2 98.5 3.3E-07 7.1E-12 66.2 5.9 55 167-221 58-112 (113)
111 TIGR01303 IMP_DH_rel_1 IMP deh 98.5 2.8E-06 6E-11 76.2 12.4 57 73-131 146-202 (475)
112 KOG1764 5'-AMP-activated prote 98.4 6.7E-07 1.5E-11 78.0 7.9 122 84-226 163-288 (381)
113 PTZ00314 inosine-5'-monophosph 98.4 2.5E-06 5.4E-11 76.9 11.5 59 72-130 158-216 (495)
114 KOG2550 IMP dehydrogenase/GMP 98.4 3.3E-06 7.2E-11 72.4 11.3 115 13-130 107-226 (503)
115 PLN02274 inosine-5'-monophosph 98.4 7.7E-07 1.7E-11 80.3 7.2 113 17-133 103-223 (505)
116 cd04600 CBS_pair_HPP_assoc Thi 98.4 8.5E-07 1.8E-11 64.4 6.2 56 72-129 68-123 (124)
117 cd04620 CBS_pair_7 The CBS dom 98.4 1E-06 2.3E-11 63.1 6.1 56 72-129 57-114 (115)
118 cd04607 CBS_pair_NTP_transfera 98.4 1.3E-06 2.7E-11 62.6 6.4 56 72-129 57-112 (113)
119 KOG0475 Cl- channel CLC-3 and 98.4 2.3E-06 5E-11 76.8 9.1 133 84-223 557-694 (696)
120 PRK11543 gutQ D-arabinose 5-ph 98.3 1.1E-06 2.4E-11 75.1 6.9 58 71-130 261-318 (321)
121 cd04627 CBS_pair_14 The CBS do 98.3 1.6E-06 3.6E-11 63.1 6.6 51 76-128 71-121 (123)
122 cd04596 CBS_pair_DRTGG_assoc T 98.3 1.5E-06 3.3E-11 61.6 6.1 56 72-129 52-107 (108)
123 cd04617 CBS_pair_4 The CBS dom 98.3 1.4E-06 3E-11 63.0 5.8 59 71-129 56-117 (118)
124 cd04630 CBS_pair_17 The CBS do 98.3 1.6E-06 3.5E-11 62.2 6.0 55 72-129 59-113 (114)
125 cd04626 CBS_pair_13 The CBS do 98.3 1.6E-06 3.5E-11 61.7 5.9 55 72-129 56-110 (111)
126 cd04624 CBS_pair_11 The CBS do 98.3 2.1E-06 4.6E-11 61.2 6.4 57 71-129 55-111 (112)
127 cd04615 CBS_pair_2 The CBS dom 98.3 2.1E-06 4.6E-11 61.3 6.4 58 70-129 55-112 (113)
128 cd04801 CBS_pair_M50_like This 98.3 1.5E-06 3.2E-11 62.3 5.5 58 72-129 56-113 (114)
129 cd04618 CBS_pair_5 The CBS dom 98.3 1.7E-06 3.7E-11 60.8 5.6 45 85-129 52-97 (98)
130 cd04606 CBS_pair_Mg_transporte 98.3 2.3E-06 5E-11 60.9 6.3 57 72-130 52-108 (109)
131 cd04587 CBS_pair_CAP-ED_DUF294 98.3 1.8E-06 3.9E-11 61.5 5.8 55 73-129 58-112 (113)
132 smart00116 CBS Domain in cysta 98.3 3.6E-06 7.9E-11 49.9 6.2 47 177-223 2-48 (49)
133 cd04625 CBS_pair_12 The CBS do 98.3 2.1E-06 4.6E-11 61.2 6.0 55 72-129 57-111 (112)
134 cd04641 CBS_pair_28 The CBS do 98.3 3.6E-06 7.9E-11 60.9 7.3 49 176-224 2-50 (120)
135 cd04582 CBS_pair_ABC_OpuCA_ass 98.3 3.3E-06 7.1E-11 59.6 6.5 54 74-129 52-105 (106)
136 cd04610 CBS_pair_ParBc_assoc T 98.3 2.8E-06 6E-11 60.0 6.2 55 73-129 52-106 (107)
137 TIGR01302 IMP_dehydrog inosine 98.3 2.3E-05 5.1E-10 70.1 13.4 58 72-131 142-200 (450)
138 cd04604 CBS_pair_KpsF_GutQ_ass 98.3 2.8E-06 6E-11 60.6 6.2 55 73-129 59-113 (114)
139 cd04585 CBS_pair_ACT_assoc2 Th 98.3 2.7E-06 5.9E-11 61.3 6.2 56 72-129 66-121 (122)
140 cd04583 CBS_pair_ABC_OpuCA_ass 98.3 2.8E-06 6E-11 60.1 6.1 55 73-129 54-108 (109)
141 cd04613 CBS_pair_SpoIVFB_EriC_ 98.2 2.4E-06 5.1E-11 60.9 5.7 56 72-129 57-113 (114)
142 cd04593 CBS_pair_EriC_assoc_ba 98.2 3.1E-06 6.8E-11 60.7 6.3 56 72-129 57-114 (115)
143 cd04631 CBS_pair_18 The CBS do 98.2 2.8E-06 6E-11 61.8 6.0 56 72-129 69-124 (125)
144 cd04611 CBS_pair_PAS_GGDEF_DUF 98.2 3.6E-06 7.8E-11 59.7 6.4 57 71-129 54-110 (111)
145 cd04635 CBS_pair_22 The CBS do 98.2 3E-06 6.5E-11 61.4 6.0 56 72-129 66-121 (122)
146 cd04639 CBS_pair_26 The CBS do 98.2 3E-06 6.4E-11 60.3 5.9 55 73-129 56-110 (111)
147 cd04595 CBS_pair_DHH_polyA_Pol 98.2 3.6E-06 7.8E-11 59.8 6.2 56 71-129 54-109 (110)
148 cd04592 CBS_pair_EriC_assoc_eu 98.2 6.5E-06 1.4E-10 61.3 7.7 51 176-226 2-52 (133)
149 cd04803 CBS_pair_15 The CBS do 98.2 4.1E-06 8.9E-11 60.6 6.5 57 71-129 65-121 (122)
150 cd04623 CBS_pair_10 The CBS do 98.2 4.6E-06 1E-10 59.3 6.3 55 72-129 58-112 (113)
151 cd04642 CBS_pair_29 The CBS do 98.2 5.1E-06 1.1E-10 60.8 6.6 51 77-129 75-125 (126)
152 cd04586 CBS_pair_BON_assoc Thi 98.2 3.1E-06 6.8E-11 62.7 5.5 55 72-129 80-134 (135)
153 cd04602 CBS_pair_IMPDH_2 This 98.2 3.9E-06 8.4E-11 60.2 5.8 55 73-129 57-113 (114)
154 cd04629 CBS_pair_16 The CBS do 98.2 3.7E-06 8.1E-11 60.0 5.7 55 72-129 59-113 (114)
155 cd04640 CBS_pair_27 The CBS do 98.2 2.5E-06 5.4E-11 62.5 4.8 58 70-129 61-125 (126)
156 cd04588 CBS_pair_CAP-ED_DUF294 98.2 5.1E-06 1.1E-10 59.0 6.2 55 73-129 55-109 (110)
157 cd04622 CBS_pair_9 The CBS dom 98.2 5.1E-06 1.1E-10 59.2 6.1 54 74-129 59-112 (113)
158 cd04601 CBS_pair_IMPDH This cd 98.2 5E-06 1.1E-10 58.9 6.0 56 72-129 53-109 (110)
159 cd04621 CBS_pair_8 The CBS dom 98.2 6.2E-06 1.3E-10 61.4 6.5 55 72-129 80-134 (135)
160 cd04633 CBS_pair_20 The CBS do 98.1 4.7E-06 1E-10 60.2 5.5 56 71-129 65-120 (121)
161 cd04589 CBS_pair_CAP-ED_DUF294 98.1 6.8E-06 1.5E-10 58.5 6.2 56 71-129 55-110 (111)
162 cd04599 CBS_pair_GGDEF_assoc2 98.1 7E-06 1.5E-10 57.6 6.0 53 73-128 51-103 (105)
163 cd04612 CBS_pair_SpoIVFB_EriC_ 98.1 7.9E-06 1.7E-10 57.9 6.3 55 73-129 56-110 (111)
164 cd04605 CBS_pair_MET2_assoc Th 98.1 7.8E-06 1.7E-10 58.0 6.2 54 74-129 56-109 (110)
165 cd04800 CBS_pair_CAP-ED_DUF294 98.1 7.3E-06 1.6E-10 58.2 6.0 55 72-129 56-110 (111)
166 cd04594 CBS_pair_EriC_assoc_ar 98.1 7.5E-06 1.6E-10 57.7 6.0 53 74-129 51-103 (104)
167 cd04614 CBS_pair_1 The CBS dom 98.1 1.1E-05 2.4E-10 56.3 6.7 47 176-222 2-48 (96)
168 cd04637 CBS_pair_24 The CBS do 98.1 7.7E-06 1.7E-10 59.2 6.1 55 73-129 67-121 (122)
169 cd04608 CBS_pair_PALP_assoc Th 98.1 2.1E-05 4.5E-10 57.6 8.3 52 175-226 2-53 (124)
170 smart00116 CBS Domain in cysta 98.1 1.4E-05 2.9E-10 47.3 6.0 46 85-130 2-47 (49)
171 cd04802 CBS_pair_3 The CBS dom 98.1 9.9E-06 2.1E-10 57.6 6.3 56 71-129 56-111 (112)
172 PRK10892 D-arabinose 5-phospha 98.1 7.1E-06 1.5E-10 70.4 6.5 58 70-130 266-323 (326)
173 cd04590 CBS_pair_CorC_HlyC_ass 98.1 9.5E-06 2.1E-10 57.6 5.7 54 73-129 57-110 (111)
174 cd04636 CBS_pair_23 The CBS do 98.1 1.2E-05 2.6E-10 59.3 6.2 53 74-129 79-131 (132)
175 cd04643 CBS_pair_30 The CBS do 98.1 1.9E-05 4.2E-10 56.4 7.2 50 176-225 2-51 (116)
176 COG4109 Predicted transcriptio 98.0 8.2E-06 1.8E-10 68.8 5.2 104 24-132 200-306 (432)
177 cd04584 CBS_pair_ACT_assoc Thi 98.0 1.5E-05 3.3E-10 57.5 5.9 56 71-129 65-120 (121)
178 cd04632 CBS_pair_19 The CBS do 98.0 3.2E-05 6.9E-10 56.5 7.6 49 176-224 2-50 (128)
179 COG0517 FOG: CBS domain [Gener 97.9 2.4E-05 5.1E-10 56.0 5.9 53 74-128 63-117 (117)
180 COG2905 Predicted signal-trans 97.9 1.5E-05 3.2E-10 71.1 5.6 76 54-132 194-270 (610)
181 TIGR01137 cysta_beta cystathio 97.9 3.1E-05 6.8E-10 69.4 7.8 62 164-225 332-393 (454)
182 cd04591 CBS_pair_EriC_assoc_eu 97.9 2.8E-05 6.1E-10 55.1 6.0 49 78-129 56-104 (105)
183 cd04598 CBS_pair_GGDEF_assoc T 97.9 2.8E-05 6.1E-10 55.9 5.7 57 71-129 59-118 (119)
184 COG4175 ProV ABC-type proline/ 97.9 2.9E-05 6.3E-10 65.1 6.3 115 69-225 270-384 (386)
185 TIGR00393 kpsF KpsF/GutQ famil 97.9 2.8E-05 6.1E-10 64.7 6.2 58 167-224 155-213 (268)
186 TIGR03520 GldE gliding motilit 97.9 6.2E-05 1.3E-09 66.6 8.4 62 163-224 187-251 (408)
187 cd02205 CBS_pair The CBS domai 97.9 4.1E-05 9E-10 53.7 5.9 53 75-129 60-112 (113)
188 PRK15094 magnesium/cobalt effl 97.9 6.8E-05 1.5E-09 63.3 8.1 61 164-224 64-127 (292)
189 TIGR03415 ABC_choXWV_ATP choli 97.8 7.8E-05 1.7E-09 65.2 8.3 112 69-225 270-381 (382)
190 PRK01862 putative voltage-gate 97.8 4.1E-05 8.8E-10 70.7 6.6 61 165-225 445-505 (574)
191 cd04609 CBS_pair_PALP_assoc2 T 97.8 9.3E-05 2E-09 52.1 7.1 50 176-226 2-51 (110)
192 cd04634 CBS_pair_21 The CBS do 97.8 6.5E-05 1.4E-09 56.3 6.2 55 72-129 88-142 (143)
193 cd04638 CBS_pair_25 The CBS do 97.8 7.4E-05 1.6E-09 52.6 5.9 54 73-129 52-105 (106)
194 COG2239 MgtE Mg/Co/Ni transpor 97.6 8.6E-05 1.9E-09 65.9 5.1 59 71-131 194-252 (451)
195 TIGR01186 proV glycine betaine 97.3 0.00071 1.5E-08 58.9 6.5 55 74-131 303-357 (363)
196 KOG0476 Cl- channel CLC-2 and 97.2 0.0048 1E-07 57.2 11.5 60 71-132 586-647 (931)
197 PRK11573 hypothetical protein; 97.2 0.0021 4.6E-08 56.9 8.8 62 163-224 183-247 (413)
198 COG1253 TlyC Hemolysins and re 97.0 0.0037 8E-08 55.8 8.3 65 163-227 202-269 (429)
199 PRK10070 glycine betaine trans 96.9 0.0026 5.7E-08 56.1 6.3 56 74-132 338-393 (400)
200 KOG0474 Cl- channel CLC-7 and 95.9 0.015 3.2E-07 53.1 5.2 57 72-130 689-745 (762)
201 COG4536 CorB Putative Mg2+ and 95.3 0.037 7.9E-07 47.7 5.2 59 73-131 265-323 (423)
202 COG4535 CorC Putative Mg2+ and 95.1 0.039 8.5E-07 44.6 4.7 56 72-130 132-187 (293)
203 KOG2118 Predicted membrane pro 94.3 0.09 2E-06 47.7 5.6 126 70-224 201-328 (498)
204 TIGR03415 ABC_choXWV_ATP choli 94.1 0.12 2.6E-06 45.4 5.8 53 74-131 327-379 (382)
205 COG1125 OpuBA ABC-type proline 92.4 0.26 5.6E-06 40.8 4.8 40 183-222 269-308 (309)
206 KOG0475 Cl- channel CLC-3 and 92.4 0.37 7.9E-06 44.4 6.1 58 70-130 636-693 (696)
207 KOG0476 Cl- channel CLC-2 and 91.5 0.28 6E-06 46.1 4.5 61 168-228 589-651 (931)
208 COG4175 ProV ABC-type proline/ 91.3 0.49 1.1E-05 40.3 5.4 47 84-131 336-382 (386)
209 COG1125 OpuBA ABC-type proline 91.2 0.48 1E-05 39.3 5.1 59 71-129 247-307 (309)
210 PRK11388 DNA-binding transcrip 71.8 13 0.00028 35.0 6.8 118 74-215 42-162 (638)
211 cd02958 UAS UAS family; UAS is 70.5 12 0.00027 26.4 5.0 61 167-227 43-111 (114)
212 smart00594 UAS UAS domain. 67.1 6.6 0.00014 28.3 3.0 58 166-223 52-121 (122)
213 PF05198 IF3_N: Translation in 64.2 21 0.00044 23.7 4.6 24 200-223 14-37 (76)
214 TIGR03278 methan_mark_10 putat 49.3 84 0.0018 28.0 7.3 79 106-225 306-390 (404)
215 COG2216 KdpB High-affinity K+ 48.2 23 0.0005 32.5 3.6 42 185-227 414-455 (681)
216 PF14827 Cache_3: Sensory doma 46.8 23 0.00049 25.2 2.9 17 200-216 93-109 (116)
217 PF05198 IF3_N: Translation in 44.4 42 0.00092 22.2 3.6 25 106-130 12-36 (76)
218 PF14827 Cache_3: Sensory doma 44.2 25 0.00053 25.0 2.7 18 107-124 92-109 (116)
219 COG0290 InfC Translation initi 35.0 42 0.00091 26.0 2.8 26 105-130 17-42 (176)
220 PF14044 NETI: NETI protein 34.8 57 0.0012 20.3 2.8 24 87-112 3-26 (57)
221 COG2216 KdpB High-affinity K+ 32.9 72 0.0016 29.5 4.3 37 93-130 414-450 (681)
222 smart00481 POLIIIAc DNA polyme 30.9 80 0.0017 19.7 3.3 38 181-219 12-49 (67)
223 PHA00673 acetyltransferase dom 30.8 1.1E+02 0.0025 23.2 4.6 33 184-216 40-72 (154)
224 PF02743 Cache_1: Cache domain 30.5 50 0.0011 21.4 2.4 24 200-223 18-45 (81)
225 KOG0700 Protein phosphatase 2C 29.4 1E+02 0.0022 27.3 4.5 114 87-227 243-357 (390)
226 PF13365 Trypsin_2: Trypsin-li 28.1 48 0.001 22.8 2.1 19 103-121 102-120 (120)
227 PF13673 Acetyltransf_10: Acet 26.2 1.2E+02 0.0027 20.6 3.9 29 189-217 34-62 (117)
228 CHL00199 infC translation init 26.1 58 0.0013 25.5 2.3 24 107-130 25-48 (182)
229 PRK00028 infC translation init 25.8 57 0.0012 25.4 2.2 17 189-205 111-127 (177)
230 TIGR00168 infC translation ini 24.8 57 0.0012 25.1 2.0 24 107-130 8-31 (165)
231 CHL00199 infC translation init 24.4 90 0.0019 24.5 3.0 27 199-225 25-51 (182)
232 PF00944 Peptidase_S3: Alphavi 22.9 81 0.0018 23.5 2.4 19 196-214 105-123 (158)
233 PF13098 Thioredoxin_2: Thiore 22.2 77 0.0017 21.7 2.2 36 188-223 73-112 (112)
234 COG0241 HisB Histidinol phosph 21.8 1.6E+02 0.0035 23.0 4.1 43 180-222 30-72 (181)
235 cd02991 UAS_ETEA UAS family, E 21.7 1.8E+02 0.004 20.7 4.1 62 167-228 43-114 (116)
236 PRK02135 hypothetical protein; 21.5 94 0.002 24.8 2.7 19 6-24 32-50 (201)
237 PF13596 PAS_10: PAS domain; P 20.5 1E+02 0.0022 20.9 2.6 17 106-122 83-99 (106)
238 PF10881 DUF2726: Protein of u 20.5 1.4E+02 0.003 21.4 3.3 53 70-128 27-80 (126)
239 PF12282 H_kinase_N: Signal tr 20.5 81 0.0017 23.6 2.1 19 198-217 106-124 (145)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.83 E-value=5.6e-20 Score=146.41 Aligned_cols=124 Identities=32% Similarity=0.455 Sum_probs=113.5
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
.+..+|+++|.+ ++.++.+++|+++|.++|.++++..+||+|++ +++|++|..|+..+++..
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g--------------- 230 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG--------------- 230 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---------------
Confidence 457789999999 89999999999999999999999999999965 999999999998864321
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
.....|+++|.++++++..|+.+.||++.|..+++.++.|+|.+|+++|+||++|+++.+.-
T Consensus 231 --------------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 231 --------------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred --------------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999998764
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-18 Score=140.97 Aligned_cols=138 Identities=32% Similarity=0.473 Sum_probs=120.5
Q ss_pred CcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
...+.+..+||.+ +++++..++++.+|.+.|.++++..+||+|++.+++|+|+++|+.+..
T Consensus 241 ~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a----------------- 301 (382)
T COG3448 241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA----------------- 301 (382)
T ss_pred HhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc-----------------
Confidence 3567889999999 999999999999999999999999999999999999999999998742
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~ 228 (234)
.| ..++.+ .......++.+|+.++.++.++++..+++-.|.+.+.|++||+|++|+++||||+.|++..+.+...
T Consensus 302 -~~---~p~qrl-r~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 302 -RP---SPFQRL-RFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred -Cc---chHHHh-hccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence 11 111222 2456678999999999999999999999999999999999999999999999999999999987654
Q ss_pred hC
Q 026712 229 DG 230 (234)
Q Consensus 229 ~~ 230 (234)
..
T Consensus 377 ~~ 378 (382)
T COG3448 377 QH 378 (382)
T ss_pred Hh
Confidence 43
No 3
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.74 E-value=2.7e-17 Score=140.58 Aligned_cols=121 Identities=26% Similarity=0.297 Sum_probs=107.4
Q ss_pred ccccccccccCCC--ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 72 TYTVGDFMTKKED--LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 72 ~~~v~~im~~~~~--~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
..+|+++|.+ + +.++++++++.+|.+.|.+.+...+||+|++|+++|+|+..|+.+.+...
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~--------------- 258 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG--------------- 258 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence 6789999998 6 99999999999999999888888999999999999999999998643110
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
.....++.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||+.|+++.
T Consensus 259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 023456899999999999999999999999999999999999988899999999999864
No 4
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.74 E-value=5e-17 Score=117.35 Aligned_cols=109 Identities=26% Similarity=0.331 Sum_probs=95.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.+|.+.|.+.+.+.+||+|++++++|+|+..|+.+... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~~ 52 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-----------------------------ND 52 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-----------------------------cc
Confidence 3578899999999999999888899999998899999999999986310 00
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 1235688899888999999999999999999999999999998899999999999986
No 5
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.74 E-value=6.5e-17 Score=117.24 Aligned_cols=112 Identities=23% Similarity=0.319 Sum_probs=97.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
.+.++++++++.+|.+.|.+.+...+||+|++|+++|+++.+|+.+....... .
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~--------------------------~ 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG--------------------------P 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence 35788999999999999999999999999999999999999999875321000 1
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++.+++++.++++.|.+++.+++||+|++|+++|+|+++|+++
T Consensus 56 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 2346788999999999999999999999999999999999998889999999999975
No 6
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.73 E-value=9.8e-17 Score=117.31 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=93.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.+|.+.|.+++.+.+||+|++|+++|+++.+|+.+............ ++..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~--------------~~~~---- 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDL--------------TVGE---- 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccC--------------CHHH----
Confidence 6789999999999999999999999999998899999999999987531110000000 0000
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
.....+.|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||+.|++++
T Consensus 64 --~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 64 --ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred --HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 001234456678999999999999999999999999999987999999999999863
No 7
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.72 E-value=4e-17 Score=121.21 Aligned_cols=124 Identities=22% Similarity=0.327 Sum_probs=107.9
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (234)
...++..+|+. +++.+.+++++.+++++|.+.+++.+||+++ ++++|-||.+++.+......
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~--------------- 124 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM--------------- 124 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---------------
Confidence 46688999998 9999999999999999999999999999997 89999999999998743221
Q ss_pred hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
..-....+.++|..++++|++++++..+-+++..++. +.|++ +|+++||||+.|+++.+.+.
T Consensus 125 -----------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e-~G~~vGIITk~DI~k~~~~~ 186 (187)
T COG3620 125 -----------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE-NGKVVGIITKADIMKLLAGT 186 (187)
T ss_pred -----------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe-CCceEEEEeHHHHHHHHhcc
Confidence 1134567999999999999999999999999988775 77885 89999999999999988653
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.72 E-value=1.1e-16 Score=113.38 Aligned_cols=94 Identities=31% Similarity=0.458 Sum_probs=86.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++++++++.+|.+.|.+.+.+.+||+|++ |+++|++|..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 47899999999999999999999999999975 8999999999998641
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~ 221 (234)
. +.++.+++++.+|++.|.+++.+++||++++ |+++|+||.+|+++
T Consensus 51 --~-----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 51 --R-----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred --e-----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 0 7889999999999999999999999999987 89999999999975
No 9
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.72 E-value=1.2e-16 Score=136.95 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=106.1
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (234)
...+|+++|.+..++.++++++++.+|++.|.+.+.+.+||+|++|+++|+||.+|+.+..... .
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~-~-------------- 264 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG-I-------------- 264 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC-C--------------
Confidence 5678999998522688999999999999999988888888889899999999999997642110 0
Q ss_pred hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
.....++.++|.++++++.+++++.+|++.|.+++++++||++ +|+++|+||+.|+++.
T Consensus 265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 0124679999999999999999999999999999999999998 6899999999999874
No 10
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.72 E-value=7.3e-17 Score=133.92 Aligned_cols=127 Identities=31% Similarity=0.489 Sum_probs=118.5
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (234)
.-..|+++|.|..+..++.+++++++..++..+.+.+++||+|+..+++|+|+.+|+...
T Consensus 186 dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~-------------------- 245 (432)
T COG4109 186 DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-------------------- 245 (432)
T ss_pred heeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC--------------------
Confidence 356899999987789999999999999999999999999999999999999999999864
Q ss_pred hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhhhC
Q 026712 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKRDG 230 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~~~ 230 (234)
.+++++..+|+++|+++.+.+++..+.++|.-.+++.+||++++.+++|+||++|+++.+-..+.+.
T Consensus 246 -------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qp 312 (432)
T COG4109 246 -------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQP 312 (432)
T ss_pred -------------CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCC
Confidence 5778999999999999999999999999999999999999999999999999999999998776654
No 11
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.71 E-value=2.3e-16 Score=113.09 Aligned_cols=105 Identities=31% Similarity=0.483 Sum_probs=95.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+...+||+|++|+++|+++..++...
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~--------------------------------- 49 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK--------------------------------- 49 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc---------------------------------
Confidence 67899999999999999998888899999998999999999999753
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+++..|+++
T Consensus 50 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 50 DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 1235788899888999999999999999999999999999998899999999999975
No 12
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=2.6e-16 Score=114.74 Aligned_cols=111 Identities=30% Similarity=0.375 Sum_probs=94.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.+|.+.|.+.+...+||+|++++++|+|+..|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~ 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 5688999999999999999889899999998899999999999987532110 0
Q ss_pred cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY---GKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~---~~~vGiit~~dll~ 221 (234)
....++.++|.. ++.++.+++++.+++++|.+++.+++||+|++ |+++|+||++|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 124567788874 68899999999999999999999999999976 69999999999875
No 13
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.71 E-value=1.9e-16 Score=140.76 Aligned_cols=122 Identities=26% Similarity=0.353 Sum_probs=110.1
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
....+++++|.+ ++.++++++++.++.++|.+.+++.+||+|++++++|+||.+|+...
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~------------------- 144 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV------------------- 144 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------------------
Confidence 456778899988 89999999999999999999999999999999999999999999642
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
....++.++|+.+++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++.....
T Consensus 145 --------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 145 --------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred --------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 123569999999999999999999999999999999999999889999999999999976543
No 14
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.69 E-value=3.1e-16 Score=131.84 Aligned_cols=128 Identities=23% Similarity=0.396 Sum_probs=109.9
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
+...+|+++|++..++.+++.++++.++.+.+.+++++.+||++++ ++++|+|+.+|++.... .
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~-~-------------- 128 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR-S-------------- 128 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh-c--------------
Confidence 4577999999986679999999999999999999999999999876 78999999999985421 0
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~ 227 (234)
......+.++|.+ ++++++++++.++++.|.+++.+.+||+|+.|.++|+||..||++.+....
T Consensus 129 --------------~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 129 --------------DAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred --------------cCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 0112347788865 568999999999999999999999999998899999999999999998653
No 15
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.69 E-value=2.3e-16 Score=144.55 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=112.2
Q ss_pred CCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712 68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147 (234)
Q Consensus 68 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 147 (234)
.....++++|+|++ +..++++++++.|+.+.|.+++.+.+||+|++++++|+|+.+|+.+......
T Consensus 442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~------------ 507 (574)
T PRK01862 442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR------------ 507 (574)
T ss_pred hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc------------
Confidence 34567899999998 7889999999999999999999999999999999999999999987421110
Q ss_pred cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHH
Q 026712 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~~l~~ 225 (234)
...+.++.++|++++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+++.+.+
T Consensus 508 ---------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 508 ---------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred ---------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 012357889999999999999999999999999999999999876 489999999999999876
Q ss_pred h
Q 026712 226 I 226 (234)
Q Consensus 226 ~ 226 (234)
.
T Consensus 573 ~ 573 (574)
T PRK01862 573 M 573 (574)
T ss_pred h
Confidence 4
No 16
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=5.1e-16 Score=113.82 Aligned_cols=121 Identities=31% Similarity=0.531 Sum_probs=98.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+++.+||++++|+++|+|+..|+.+........ +.+..+. ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-----------~~~~~~~------~~ 65 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-----------PLRGRLR------GR 65 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-----------hhhhhhh------cc
Confidence 678999999999999999998999999999889999999999998653211100 0000000 11
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+|+..|+++
T Consensus 66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 2345788999989999999999999999999999999999998899999999999985
No 17
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.69 E-value=6.5e-16 Score=111.93 Aligned_cols=111 Identities=32% Similarity=0.432 Sum_probs=95.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~ 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 4678899999999999999999999999999899999999999987532110 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 12345788888899999999999999999999999999999976 79999999999986
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=9.5e-16 Score=110.28 Aligned_cols=111 Identities=36% Similarity=0.621 Sum_probs=95.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.++.++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+..... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~ 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence 57789999999999999999899999999988999999999999875321110 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+..|+++
T Consensus 56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 1235788899888999999999999999999999999999996 99999999999976
No 19
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=8.9e-16 Score=111.10 Aligned_cols=111 Identities=25% Similarity=0.376 Sum_probs=95.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-------------------------- 55 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-------------------------- 55 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence 57889999999999999998899999999987 899999999999875321100
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.....++.++|..+++++.+++++.++++.|.+++.+.+||+++ |+++|+|+..|+++
T Consensus 56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 01235788999888999999999999999999999999999996 99999999999975
No 20
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=9.8e-16 Score=110.63 Aligned_cols=109 Identities=23% Similarity=0.366 Sum_probs=95.0
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT 164 (234)
Q Consensus 85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (234)
..++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+.+..... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~~ 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------LS 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------CC
Confidence 57889999999999999988888999999889999999999997642111 01
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
...++.++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+||.+|++.
T Consensus 56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 235688999888999999999999999999999999999998899999999999874
No 21
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.69 E-value=9.8e-16 Score=109.21 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++++.++.+|.+.|.+.+...+||+|++|+++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 467889999999999999888888999999889999999999998631
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
..++.++|.+.+.++.+++++.++++.|.+++...+||++++|+++|+|+..++++
T Consensus 50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred --ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 12467888888888999999999999999999999999998889999999999975
No 22
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=7.8e-16 Score=110.64 Aligned_cols=109 Identities=30% Similarity=0.437 Sum_probs=95.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+...+||++++|+++|+++..++.+.+.. .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------------------------~ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-----------------------------G 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-----------------------------c
Confidence 56788999999999999988888899999988999999999999865321 1
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|..|+.+
T Consensus 53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 1235788899888999999999999999999999999999997799999999999975
No 23
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.68 E-value=1.4e-15 Score=108.71 Aligned_cols=106 Identities=33% Similarity=0.483 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.++.++.++.+.|.+.+...+||+|++++++|+++..|+.+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-------------------------------- 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-------------------------------- 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence 567889999999999999988999999999889999999999997631
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+.++++++++.++++.|.+.+.+++||++++|+++|+++.+|+++
T Consensus 51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 1235688888888999999999999999999999999999998899999999999875
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=2e-15 Score=108.30 Aligned_cols=107 Identities=27% Similarity=0.507 Sum_probs=94.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------------------------------- 51 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA------------------------------- 51 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence 6788999999999999999999999999998899999999999976421
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.++++.|.+++.+.+||++++|+++|+|++.|+++
T Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 1113478888888999999999999999999999999999998899999999999965
No 25
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2e-15 Score=108.61 Aligned_cols=110 Identities=26% Similarity=0.400 Sum_probs=96.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+...+||+|++++++|+++.+|+++.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~---------------------------- 53 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI---------------------------- 53 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC----------------------------
Confidence 4678899999999999999888999999998899999999999987532111
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++.+++++.++++.|.+++...+||++++|+++|++++.|+++
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 1235688888888999999999999999999999999999998899999999999975
No 26
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.67 E-value=2.8e-16 Score=115.94 Aligned_cols=113 Identities=25% Similarity=0.241 Sum_probs=95.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++++.++.++++.|.+.+.+.+||+|++++++|+++.+|+.+...... .
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------~ 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------V 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------c
Confidence 5788999999999999999999999999998899999999999986432111 1
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHH---------HcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLL---------ETKYRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~---------~~~~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
....++.++|.+++.++.+++++.+++++|. +.+...+||++++|+++|+||..|+++++
T Consensus 56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 3457899999999999999999999999653 33567888998789999999999999863
No 27
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1e-15 Score=110.71 Aligned_cols=109 Identities=30% Similarity=0.441 Sum_probs=92.3
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++++++++.+|.+.|.+.+ ...+||+|++|+++|+++.+|+.+... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~ 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence 5788999999999999997664 788999998899999999999986421 0
Q ss_pred hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.....++.++|.. .++++.+++++.++++.|.+++.+++||++++|+++|+++..|+++
T Consensus 53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 1123568888864 3678999999999999999999999999997789999999999875
No 28
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.67 E-value=9.4e-16 Score=134.67 Aligned_cols=125 Identities=26% Similarity=0.349 Sum_probs=109.6
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
..+.+|+++|+++.++.+++.++++.++.+.+.+++++++||++++ ++++|+|+.+|++....
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---------------- 251 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---------------- 251 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc----------------
Confidence 4577999999987789999999999999999999999999999875 68999999999985421
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
....++.++|. ++.++++++++.++++.|.+++.+..+|+|+.|.++|+||.+||++.+...
T Consensus 252 ---------------~~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 252 ---------------KKNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred ---------------cCCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence 11234677775 488999999999999999999999999999989999999999999999743
No 29
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.67 E-value=1e-15 Score=136.22 Aligned_cols=124 Identities=24% Similarity=0.375 Sum_probs=110.1
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHh-----CCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCC
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-----KRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF 144 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~-----~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 144 (234)
.+..+++++|++ ++.+++++.++.++.+.|.+ .+...+||+|++++++|+|+.+|++..
T Consensus 128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a-------------- 191 (449)
T TIGR00400 128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA-------------- 191 (449)
T ss_pred CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--------------
Confidence 346789999998 89999999999999999975 345678999988999999999999753
Q ss_pred CCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
..+.+++++|.++++++++++++.+|++.|.+++...+||||++|+++|+||.+|+++.+.
T Consensus 192 -------------------~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 192 -------------------KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred -------------------CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH
Confidence 2345799999998999999999999999999999999999998999999999999999998
Q ss_pred Hhhh
Q 026712 225 QIKR 228 (234)
Q Consensus 225 ~~~~ 228 (234)
+...
T Consensus 253 ~~~~ 256 (449)
T TIGR00400 253 SEAT 256 (449)
T ss_pred hhhH
Confidence 7654
No 30
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=1.7e-15 Score=109.15 Aligned_cols=110 Identities=26% Similarity=0.490 Sum_probs=95.2
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT 164 (234)
Q Consensus 85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (234)
+.++.+++++.++.+.|.+.+...+||+|++++++|+++.+|+.+..... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~---------------------------~~~ 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES---------------------------EEL 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh---------------------------hhh
Confidence 57889999999999999999989999999889999999999998642110 012
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
...++.++|..++.++..++++.++++.|.+++.+.+||++++|+++|+++..|+++
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 345788899888999999999999999999999999999998899999999999974
No 31
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=1.8e-15 Score=106.56 Aligned_cols=94 Identities=23% Similarity=0.496 Sum_probs=86.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 57889999999999999998999999999988999999999999753
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
..+.++.+++++.++++.|.+++.+++||++++|+++|+||++|+++
T Consensus 49 -----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 49 -----------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred -----------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 01888999999999999999999999999997799999999999985
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.7e-15 Score=110.66 Aligned_cols=121 Identities=34% Similarity=0.506 Sum_probs=98.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++.+.......... .+ ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~-~~-----------------~~~~ 63 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG-EE-----------------SLTK 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc-cc-----------------cccc
Confidence 56789999999999999999999999999988999999999999875321110000 00 0001
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus 64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 23457888998889999999999999999999999999999977899999999999863
No 33
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2.1e-15 Score=111.24 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=93.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++++.|.+.++..+||+|++|+++|+++..|+.+...... .... +...... +...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~-~~~~----------~~~~~~~-~~~~- 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD-DLLL----------YRTITFK-ELSE- 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc-hhhc----------ccchhhh-hhhh-
Confidence 5788999999999999999889999999998899999999999987531111 0000 0000000 0000
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.-....+.|..++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 69 -~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 -KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 001223456778999999999999999999999999999998899999999999975
No 34
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=1.9e-15 Score=113.18 Aligned_cols=132 Identities=27% Similarity=0.365 Sum_probs=98.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh-hHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT-FNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 162 (234)
++.++.+++++.+|++.|.+.+...+||+|++++++|+++..|+.+......... +.. ..+.|.+ +.+......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~ 76 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERG----LPK-KSIKMKRKAGQKRYRYV 76 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccc----cch-hhhhhhhhccccccccc
Confidence 5678899999999999999988899999999999999999999987642111000 000 0000000 000011111
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.....++.++|.+++..+.+++++.++++.|.+.+.+++||+++ |+++|+|+..|+++
T Consensus 77 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 77 KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 12345789999988999999999999999999999999999995 99999999999986
No 35
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.3e-15 Score=109.85 Aligned_cols=112 Identities=38% Similarity=0.549 Sum_probs=95.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+...+||+|++++++|+|+..|+.+.+.... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~ 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence 5678999999999999998888888999998899999999999987532110 001
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 2346788999888999999999999999999999999999996 99999999999985
No 36
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=1.2e-15 Score=109.56 Aligned_cols=102 Identities=38% Similarity=0.496 Sum_probs=89.9
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 88 VKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 88 v~~~~~v~~a~~~~~~~~-----~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
+.+++++.++.+.|.+.+ +..+||+|++++++|+|+.+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~-------------------------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------------------------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence 578899999999998766 4679999988999999999999752
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+|+..|+++.
T Consensus 50 -~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 50 -DPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred -CCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 12356888888889999999999999999999999999999988999999999999975
No 37
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=1.4e-15 Score=110.03 Aligned_cols=114 Identities=28% Similarity=0.394 Sum_probs=93.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+....... . .+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~-~-----------~~----------~~ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN-L-----------DL----------ER 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc-h-----------hH----------HH
Confidence 57889999999999999999999999999988999999999999875321100 0 00 00
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+.+ .+||++++|+++|+||..|+++
T Consensus 60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 0246788999988999999999999999998765 5999998899999999999986
No 38
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=1.8e-15 Score=111.07 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=92.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++++++++.+|.+.|.+.++..+||+|++ |+++|+|+..|+.+.......... .+. . .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~----------~~~------~-~- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP----------GLD------P-L- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc----------chh------h-h-
Confidence 57889999999999999998888999999987 899999999999875311100000 000 0 0
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVV 220 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll 220 (234)
......+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 64 YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 0001123356778899999999999999999999999999999889999999999974
No 39
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=4.3e-15 Score=110.45 Aligned_cols=131 Identities=37% Similarity=0.596 Sum_probs=100.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+.+.+||+|++++++|+++..|+.+............ .+. .-.+.+ ......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~-~~~-----~~~~~~-~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVT-LLY-----SVIFLD-ESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccccc-ccc-----cccccc-hHHHHH
Confidence 5688999999999999999888899999998899999999999987643211100000 000 000000 122233
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|+.|++++
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 3445788999888999999999999999999999999999996 999999999999864
No 40
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.65 E-value=2.5e-15 Score=108.25 Aligned_cols=111 Identities=34% Similarity=0.551 Sum_probs=96.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.++..+||+|++|+++|+++..|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 5788999999999999999888889999998899999999999986521100 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+++..|+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 1225788999999999999999999999999999999999997 789999999999975
No 41
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.8e-15 Score=107.80 Aligned_cols=109 Identities=28% Similarity=0.454 Sum_probs=94.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~ 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------S 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc----------------------------c
Confidence 577899999999999999998999999999889999999999998642100 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 1134688889888999999999999999999999999999996 99999999999874
No 42
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.7e-15 Score=110.07 Aligned_cols=123 Identities=30% Similarity=0.461 Sum_probs=97.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++.++.++.+++++|.+.+...+||+|++ |+++|+|+..|+.+.+..... |..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~--------------~~~~~~--~~~~ 65 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK--------------FNKIKT--GNGL 65 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccch--------------hccccc--cccc
Confidence 57889999999999999999898899999987 999999999999875321100 000000 0000
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
.....++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 112356888888889999999999999999999999999999977999999999999863
No 43
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=3.9e-15 Score=106.17 Aligned_cols=104 Identities=37% Similarity=0.592 Sum_probs=93.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++.+.++.++.+.|.+.+...+||+|+ ++++|+++..|+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---------------------------------
Confidence 6788999999999999998888888999997 999999999999752
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+|+..|+++
T Consensus 49 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 49 DPDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred CccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 1234688899888999999999999999999999999999998899999999999985
No 44
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.65 E-value=4.1e-15 Score=107.18 Aligned_cols=111 Identities=30% Similarity=0.389 Sum_probs=95.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++.+.+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------~ 55 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------D 55 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------c
Confidence 5678899999999999998888889999998899999999999987532111 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+++.+.+||++++|+++|+|+..||++
T Consensus 56 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 56 ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 1224688999888999999999999999999999999999998899999999999975
No 45
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.65 E-value=5.4e-15 Score=106.07 Aligned_cols=109 Identities=32% Similarity=0.507 Sum_probs=94.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+...+||+++ ++++|+++.+|+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------- 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGP---------------------------- 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCC----------------------------
Confidence 4678999999999999999888889999987 89999999999987531100
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 1346788899888999999999999999999999999999998899999999999975
No 46
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=4.6e-15 Score=108.43 Aligned_cols=120 Identities=23% Similarity=0.426 Sum_probs=97.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+.+......... ..+ ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~----------~~~--------~~~~ 63 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVE----------DQQ--------RTQT 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccccc----------chh--------hhhh
Confidence 5788999999999999999888899999998899999999999986421110000 000 0001
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++..++++.++++.|.+++.+.+||++++|+++|++++.|+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 2345688888888999999999999999999999999999998899999999999985
No 47
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.64 E-value=4.3e-15 Score=106.41 Aligned_cols=106 Identities=46% Similarity=0.623 Sum_probs=92.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++.+.++.++.+.|.+.+...+||+|++|+++|+++.+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------- 50 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence 578899999999999999988889999999889999999999986421
Q ss_pred cCCCcccccccCCCeEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHE-NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~-~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus 51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 1235688888777777777 999999999999999999999998899999999999985
No 48
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.64 E-value=6.7e-15 Score=105.73 Aligned_cols=109 Identities=33% Similarity=0.523 Sum_probs=94.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++.+.++.++.+.|.+.+...+||+|+ ++++|+++..|+.+.+.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence 5788999999999999998888889999997 99999999999986422111 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++.+++++.++++.|.+++.+++||+++ |+++|+++..|+++
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 1235688889889999999999999999999999999999996 99999999999985
No 49
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.64 E-value=7.7e-15 Score=105.25 Aligned_cols=108 Identities=34% Similarity=0.456 Sum_probs=94.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+++.+||+++ ++++|+++.+|+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 5788999999999999999989999999998 9999999999998752100
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+|+..|+++
T Consensus 52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 1125688888888999999999999999999999999999997799999999999975
No 50
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-15 Score=133.52 Aligned_cols=125 Identities=22% Similarity=0.362 Sum_probs=113.1
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
.-.+++++++.. +.+++++.+++.+|.+.|.+.+++.+.+++.++...||||.+|+.++....+.
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~------------- 210 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR------------- 210 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-------------
Confidence 335679999988 88999999999999999999999999999999999999999999987554443
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
....+|+++|+.++++++..+.+.+|+-+|.+++++++||++ +|+++|+||..||++...
T Consensus 211 --------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 211 --------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred --------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 345889999999999999999999999999999999999998 799999999999998765
No 51
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=6.2e-15 Score=104.75 Aligned_cols=103 Identities=34% Similarity=0.551 Sum_probs=91.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+...+||+| +++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~--------------------------------- 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA--------------------------------- 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc---------------------------------
Confidence 467889999999999999988888999998 5899999999999863
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++++++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus 48 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 48 HPNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred cccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 1234678889888999999999999999999999999999996 99999999999873
No 52
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.64 E-value=5.5e-15 Score=106.98 Aligned_cols=106 Identities=33% Similarity=0.537 Sum_probs=92.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL 160 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
++.++.+++++.++.+.|.+.+...+||+|+ +|+++|+++.+|+....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence 4678899999999999998888889999997 78999999999986421
Q ss_pred HhhcCCCcccccccCCCeEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 161 LSKTNGKVVGDLMTPAPLVVHE--NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 161 ~~~~~~~~v~~im~~~~~~v~~--~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+..+.. ++++.++++.|.+++.+.+||++++|+++|+||..|+++
T Consensus 54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 1234688899877788866 999999999999999999999998899999999999975
No 53
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=7.3e-15 Score=105.46 Aligned_cols=107 Identities=30% Similarity=0.483 Sum_probs=94.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++.+.++.++.+.|.+.+...+||+|+ |+++|+++..|+.+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------------------------~ 52 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-----------------------------G 52 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence 5788999999999999999888889999998 999999999999864210 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++.+++++.++++.|.+++.+.+||++ +|+++|+||..|+++
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 134678889988999999999999999999999999999999 799999999999975
No 54
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=7.8e-15 Score=106.14 Aligned_cols=110 Identities=24% Similarity=0.445 Sum_probs=91.0
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.+++++.++.++.+.|.+.+ ...++|++ +|+++|+++..|+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK--------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence 4678899999999999998877 66677777 589999999999986431100
Q ss_pred hcCCCcccccccCCCeEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHEN--TNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~--~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.....++.++|..+++++.++ +++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 012356888998888889887 68999999999999999999998899999999999985
No 55
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.63 E-value=8.5e-15 Score=105.27 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++++.++.++.+.|.+.+...++|+|+ ++++|+++.+|+.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 4678899999999999999888888999998 89999999999986532110 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|.+++..+.+++++.++++.|.+++.+.+||++ +|+++|+||..|++++
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~ 111 (111)
T cd04589 54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence 134578889988899999999999999999999999999998 4899999999999863
No 56
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.63 E-value=6.4e-15 Score=105.85 Aligned_cols=108 Identities=32% Similarity=0.456 Sum_probs=92.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++++++++.+|.+.|.+.+.+.+||++++ |+++|+++..|+.+.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 57889999999999999998888999999988 9999999999998753110
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.+++ .++.++.+++++.++++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus 54 -~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 54 -EEDLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -CCcCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 1113466666 46888999999999999999999999999998899999999999975
No 57
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.63 E-value=8e-15 Score=105.59 Aligned_cols=111 Identities=33% Similarity=0.500 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+.+.+||+++ ++++|+|+..|+.+....... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence 4678899999999999998888889999997 999999999999753221110 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.++++.|.+++.+++||++++|+++|+|+..|++.
T Consensus 55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 1125788899888999999999999999999999999999997799999999999874
No 58
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=3.6e-15 Score=111.28 Aligned_cols=128 Identities=34% Similarity=0.610 Sum_probs=98.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHH----
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQR---- 159 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (234)
++.++++++++.++.+.|.+.+...+||+|++++++|+++..|+.+......... ...|-.......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 73 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERR---------RARWLDLLAGAEELAA 73 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcch---------hhhHHHHhcchHHHHH
Confidence 6788999999999999999999999999998899999999999986532111000 001110000000
Q ss_pred HHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 160 LLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 160 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
........++.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|+|++.|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0011234578899988899999999999999999999999999999 899999999999975
No 59
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=4.3e-15 Score=109.60 Aligned_cols=114 Identities=27% Similarity=0.427 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh-
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS- 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 162 (234)
++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+.+.... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence 46788999999999999998888899999988999999999999852100 00000
Q ss_pred --hcCCCcccccccCCCeEe------cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 026712 163 --KTNGKVVGDLMTPAPLVV------HENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVR 221 (234)
Q Consensus 163 --~~~~~~v~~im~~~~~~v------~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~ 221 (234)
.....++.++|..++..+ .+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 113456889997655443 368899999999999999999999976 79999999999986
No 60
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=1e-14 Score=107.66 Aligned_cols=124 Identities=26% Similarity=0.370 Sum_probs=96.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++..+.+++++.+|.++|.+.+.+.+||+|++++++|+++.+|+.+.+........ +.....-...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~--------------~~~~~~~~~~ 67 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKAR--------------TGDRSGEKER 67 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcc--------------hhhhhhhhhh
Confidence 57789999999999999999999999999998999999999999864321100000 0000000011
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVD--GYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~--~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++.+++++.++++.|.+.+.+.+||++ ++|+++|+||++|+++
T Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 234578899988899999999999999999999999999995 3589999999999985
No 61
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.62 E-value=1.2e-14 Score=104.27 Aligned_cols=109 Identities=37% Similarity=0.614 Sum_probs=93.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+...+||+|+ ++++|+++..|+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR---------------------------- 52 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc----------------------------
Confidence 5788999999999999999888889999998 99999999999986421000
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++.+++++.++++.|.+++.+.+||++++|+++|+|+..|+++
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 0113577888888999999999999999999999999999997799999999999975
No 62
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.62 E-value=6e-15 Score=131.15 Aligned_cols=121 Identities=25% Similarity=0.304 Sum_probs=107.2
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
....++.++|.+ +++++.+++++.+++++|.+.+.+.+||+|+ ++++|+||.+|+...
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~------------------- 142 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV------------------- 142 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-------------------
Confidence 446678889987 8899999999999999999999988988885 799999999999542
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
....++.++|+.+++++++++++.+|+++|.+++++++||+|++|+++|+||.+||++.....
T Consensus 143 --------------~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 143 --------------DRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred --------------CCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 123579999999999999999999999999999999999999889999999999999876543
No 63
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.62 E-value=1.3e-14 Score=105.72 Aligned_cols=120 Identities=38% Similarity=0.571 Sum_probs=96.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++++.++.++.+.|.+.+...+||+|+ |+++|+++..|+.+.......... .+ .....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~----------~~-------~~~~~ 63 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLD----------IW-------ELYYL 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccccc----------ch-------hhhhh
Confidence 5678999999999999999988899999997 999999999999875321111000 00 00000
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 1235688889889999999999999999999999999999997799999999999986
No 64
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.62 E-value=5.3e-15 Score=132.34 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=102.2
Q ss_pred ccccccccC-CCceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 74 TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 74 ~v~~im~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
+|+++|... .+..++++++++.+|+++|.+.+++.+||+|+ +++++|+||..|+.+..
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence 477777521 14578999999999999999999999999996 58999999999996420
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
...+.++.++|++ +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus 157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 1245679999986 788999999999999999999999999999889999999999999864
No 65
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.61 E-value=1.6e-14 Score=102.91 Aligned_cols=100 Identities=28% Similarity=0.340 Sum_probs=89.6
Q ss_pred eeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhcC
Q 026712 86 HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN 165 (234)
Q Consensus 86 ~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (234)
.++++++++.++.+.|.+.+...+||+|+ ++++|+++.+|+.+. .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~----------------------------------~ 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA----------------------------------T 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh----------------------------------c
Confidence 57799999999999999999999999998 999999999999753 1
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
..++.++|...+.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 1346778888899999999999999999999999999998 699999999999875
No 66
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=2.5e-14 Score=102.99 Aligned_cols=111 Identities=36% Similarity=0.627 Sum_probs=93.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.+|.+.|.+.+.+.+||+|+ |+++|+++..|+......... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~ 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence 5788999999999999999988999999997 999999999998632111100 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+|+..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1123488899888999999999999999999999999999997799999999999975
No 67
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.9e-14 Score=103.54 Aligned_cols=110 Identities=26% Similarity=0.483 Sum_probs=91.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+...++|.+ +|+++|+++.+|+.+....... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA--------------------------G 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC--------------------------c
Confidence 567899999999999999877777776665 5899999999999875321100 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|...+.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 123578899988889999999999999999999999999999 699999999999986
No 68
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.61 E-value=7.7e-15 Score=122.27 Aligned_cols=114 Identities=32% Similarity=0.360 Sum_probs=100.5
Q ss_pred ccccccccccCCC-ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712 72 TYTVGDFMTKKED-LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150 (234)
Q Consensus 72 ~~~v~~im~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (234)
..+|+++|.+ + +.++++++++.++.+.|.+.+.+.+||+|++|+++|+|+..|+.+.... .
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~--------------- 215 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G--------------- 215 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C---------------
Confidence 4689999987 6 8999999999999999998889999999988999999999999875210 0
Q ss_pred hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 026712 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLIT 215 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit 215 (234)
.....++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+|+
T Consensus 216 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 216 ------------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 12346799999999999999999999999999999999999998899999984
No 69
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.60 E-value=1.7e-14 Score=103.20 Aligned_cols=109 Identities=30% Similarity=0.424 Sum_probs=91.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.++.+.|.+.+.+.+||+++ ++++|+++.+|+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA--------------------------- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc---------------------------
Confidence 5678899999999999999999999999998 999999999999875321110
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|.+++.++++++++.+++++|.+ . ..+||++++|+++|+|+.+|++++
T Consensus 54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 11356888888889999999999999999987 3 347888878999999999999864
No 70
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.4e-14 Score=105.91 Aligned_cols=121 Identities=31% Similarity=0.447 Sum_probs=95.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..++.+.+....... ++... .. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~------------~~~~~---~~--~ 63 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTA------------GETEK---DL--A 63 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccc------------cchHH---HH--H
Confidence 4678999999999999999999999999997 89999999999987532100000 00000 00 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|..+++++.+++++.++++.|.+++...+||++++|+++|+++..|++++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 11246888888889999999999999999999999999999988999999999999864
No 71
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.4e-14 Score=105.65 Aligned_cols=120 Identities=30% Similarity=0.459 Sum_probs=96.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.++.+.|.+.+...+||+|+ |+++|+++..++.+.......... . ......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~---------------~--~~~~~~ 63 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVR---------------D--RHQERR 63 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhccc---------------c--hhhhhh
Confidence 5788999999999999999888999999997 999999999999875321111000 0 000011
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
....++.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+..|++++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 2345688889888999999999999999999999999999996 999999999999863
No 72
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.60 E-value=1.4e-14 Score=128.81 Aligned_cols=119 Identities=35% Similarity=0.551 Sum_probs=106.3
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
..+.++.|.+ ++.++++++++.++.++|.+.+++.+||+|++ ++++|+|+.+|+....
T Consensus 79 Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----------------- 139 (450)
T TIGR01302 79 VKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----------------- 139 (450)
T ss_pred hccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-----------------
Confidence 3456788887 89999999999999999999999999999987 7999999999997421
Q ss_pred chhhhhHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
....++.++|+ .+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus 140 ---------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 140 ---------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred ---------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 13467899998 58999999999999999999999999999999999999999999999864
No 73
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=5.1e-14 Score=101.26 Aligned_cols=110 Identities=32% Similarity=0.505 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++++.++.++.+.|.+.+.+.+||+|++ +++|+++..|+.+.+..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRNL--------------------------K 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhccC--------------------------C
Confidence 56788999999999999998888999999964 99999999999875321100 0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 1235688899888999999999999999999999999999995 49999999999974
No 74
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.59 E-value=2.4e-14 Score=128.53 Aligned_cols=117 Identities=35% Similarity=0.485 Sum_probs=106.0
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKT 153 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
.++++|.+ ++.++++++++.++.++|.+.+++.+||+|++++++|+|+.+|+....
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------------------- 143 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET---------------------- 143 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------------
Confidence 57788987 899999999999999999999999999999999999999999996421
Q ss_pred hHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 154 FNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 154 ~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
....++.++|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus 144 ----------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 144 ----------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred ----------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 12357889998 78999999999999999999999999999999999999999999998864
No 75
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.58 E-value=3.4e-14 Score=127.40 Aligned_cols=113 Identities=24% Similarity=0.323 Sum_probs=101.5
Q ss_pred cccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhH
Q 026712 79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFN 155 (234)
Q Consensus 79 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
|.+ +++++++++++.++.++|.+.+++.+||+|+ +++++|+||.+|+....
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------ 159 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------ 159 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence 656 7899999999999999999999999999987 47999999999996431
Q ss_pred HHHHHHhhcCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 156 ELQRLLSKTNGKVVGDLMTPA--PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 156 ~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
....++.++|+++ ++++.+++++.++++.|.+++.+.+||+|++++++|+||++||++.+..
T Consensus 160 --------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 160 --------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred --------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 2357899999876 7899999999999999999999999999988999999999999999875
No 76
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.57 E-value=5.3e-14 Score=102.49 Aligned_cols=119 Identities=35% Similarity=0.506 Sum_probs=95.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++++++++.+|.+.|.+.+...+||+|++++++|+++..++.+.......... ... ...
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~~-~~~ 63 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EHE-LYL 63 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hhh-hhh
Confidence 46789999999999999998888899999988999999999999764211100000 000 001
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..+++++..++++.++++.|.+++.+.+||+++ |+++|+++..|+++
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 2345688889888999999999999999999999999999996 99999999999975
No 77
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=7.7e-14 Score=99.48 Aligned_cols=104 Identities=38% Similarity=0.613 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++..+.++.++...|.+.+.+.+||++++++++|+++.+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~--------------------------------- 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN--------------------------------- 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc---------------------------------
Confidence 56788999999999999998888899999988999999999999752
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
....++.++|..++.++..++++.++++.|.+++.+.+||++ +|+++|+|+..|+++
T Consensus 49 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 49 PEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred cccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 112346777888899999999999999999999999999999 589999999999875
No 78
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.57 E-value=8.3e-14 Score=99.19 Aligned_cols=111 Identities=46% Similarity=0.696 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.+++.+.++.++.+.|.+.+...+||++++++++|+++.+|+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL--------------------------- 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC---------------------------
Confidence 46788999999999999999888899999988999999999999875321110
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.....+.++|..++..+.+++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 0111256778888999999999999999999999999999998899999999999975
No 79
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.56 E-value=5.3e-14 Score=100.65 Aligned_cols=100 Identities=32% Similarity=0.493 Sum_probs=89.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL 160 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
....+.+++++.++.+.+.+.+...+||+|+ +|+++|+|+.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL----------------------------- 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-----------------------------
Confidence 4678899999999999999988888999998 68999999999998641
Q ss_pred HhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 161 LSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 161 ~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
.. +|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+||+.|++++
T Consensus 54 ----~~-----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 54 ----KN-----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred ----HH-----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 00 7778899999999999999999999999999996 7899999999999863
No 80
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.56 E-value=4.6e-14 Score=126.46 Aligned_cols=117 Identities=26% Similarity=0.387 Sum_probs=103.4
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (234)
..++.|.. ++.++++++++.++.++|.+.+++.+||+|++ ++++|+|+.+|+...
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-------------------- 154 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-------------------- 154 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--------------------
Confidence 35567776 78999999999999999999999999999874 799999999999632
Q ss_pred hhhhHHHHHHHhhcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 151 WKTFNELQRLLSKTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
.....++.++|++ +++++.+++++.+++++|.+++.+.+||+|++++++|+||++|+++...
T Consensus 155 ------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 155 ------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred ------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 0234679999987 8999999999999999999999999999999999999999999998754
No 81
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.56 E-value=5.6e-14 Score=125.55 Aligned_cols=122 Identities=24% Similarity=0.297 Sum_probs=102.7
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
+...+++++|.+ ++.++.+++++.++++.|.+.+++.+||+|++++++|+|+.+|+.+.+....
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------- 395 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-------------- 395 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC--------------
Confidence 567889999988 8999999999999999999889999999998899999999999987532110
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
.....++.++|.+++.++.+++++.++++.|.+++ .+||+++|+++|+||+.|+++.+
T Consensus 396 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 396 -------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 01235788999988999999999999999998764 34454479999999999999875
No 82
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=1.7e-13 Score=103.42 Aligned_cols=136 Identities=33% Similarity=0.539 Sum_probs=98.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCC--CC---CCCCCccchhhhhHHHH
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQN--DT---SLFPNVNSTWKTFNELQ 158 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~ 158 (234)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+.+........ .. ..+..........++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5788999999999999999999999999997 999999999999876432211000 00 00000000000111111
Q ss_pred HHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 159 RLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 159 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.........++.++|..++.++..++++.+++..|.+.+.+.+||+++ |+++|+++..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 112222456788899889999999999999999999999999999996 99999999999975
No 83
>PRK11573 hypothetical protein; Provisional
Probab=99.55 E-value=7.6e-14 Score=122.71 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=109.0
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
..+.+|+++|.|+.++.+++.++++.++.+.+.+++++++||++++ +.++|+|+.+|++..... ...
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~~----------- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KKE----------- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cCc-----------
Confidence 4578999999999999999999999999999999999999999765 789999999999864210 000
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~ 227 (234)
.....+.+++ +++.+|+++.++.++++.|.+++.+...|+|+.|...|+||.+||++.+....
T Consensus 252 ---------------~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 252 ---------------FTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred ---------------CCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 0112233444 46899999999999999999999999999999999999999999999998543
No 84
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.7e-13 Score=99.55 Aligned_cols=113 Identities=29% Similarity=0.423 Sum_probs=92.0
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~-~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
++.++++++++.++.+.|...+ .+.+||+|+ |+++|+++..|+.+....... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~------------------------~~ 56 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYG------------------------RA 56 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhh------------------------HH
Confidence 5678899999999999998776 889999998 999999999999864211000 00
Q ss_pred hcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEehHHHHH
Q 026712 163 KTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYR---RLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 163 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~---~vpVv~~~~~~vGiit~~dll~ 221 (234)
.....++.++|..++..+.+++++.++++.|.+++.. ..+|++++|+++|+|+..|+++
T Consensus 57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 1134578899999999999999999999999988864 3468887899999999999975
No 85
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.53 E-value=1.5e-13 Score=125.47 Aligned_cols=151 Identities=25% Similarity=0.336 Sum_probs=114.9
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCC---------------
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGG--------------- 136 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~--------------- 136 (234)
..+|+++|.+ ++.++++++++.+|+++|.++++..+||+|++|+++|+|+.+|+.+.......
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 3579999988 89999999999999999999999999999998999999999999875432110
Q ss_pred ----------C-CCC---CC--------------CCCC----ccchhh--------------------------------
Q 026712 137 ----------N-QND---TS--------------LFPN----VNSTWK-------------------------------- 152 (234)
Q Consensus 137 ----------~-~~~---~~--------------~~~~----~~~~~~-------------------------------- 152 (234)
. ... +. +..+ ++..+.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~ 224 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN 224 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence 0 000 00 0000 000000
Q ss_pred -------hhHHHHHHHhhcCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 153 -------TFNELQRLLSKTNGKVVGDLMT-PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 153 -------~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
.++.+.....-....+|.++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus 225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 0012333333345678999999 89999999999999999999999999999998999999999999998654
No 86
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1e-13 Score=121.88 Aligned_cols=125 Identities=32% Similarity=0.446 Sum_probs=113.8
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhC-----CCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCC
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLF 144 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~-----~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 144 (234)
...-+++.+|+. ++++++++.|+.+++..+++. ...+++|+|.+++++|+++.++++..
T Consensus 129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a-------------- 192 (451)
T COG2239 129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA-------------- 192 (451)
T ss_pred CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC--------------
Confidence 456689999999 999999999999999999843 46789999999999999999999854
Q ss_pred CCccchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 145 PNVNSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
.+..++.++|.+.++.+.+++..+++++.|.+++.-.+||||++++++|+||..|++..+.
T Consensus 193 -------------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 193 -------------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred -------------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhhh
Q 026712 225 QIKRD 229 (234)
Q Consensus 225 ~~~~~ 229 (234)
+...+
T Consensus 254 eEa~e 258 (451)
T COG2239 254 EEATE 258 (451)
T ss_pred HHHHH
Confidence 76543
No 87
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.51 E-value=5.2e-13 Score=96.53 Aligned_cols=113 Identities=42% Similarity=0.629 Sum_probs=96.3
Q ss_pred cccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHH
Q 026712 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNE 156 (234)
Q Consensus 77 ~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
++|.+ ++.++.++.++.+|...|.++++..+||++. ++++|++|.+|+.+.......
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~-------------------- 59 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGK-------------------- 59 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCC--------------------
Confidence 34445 7899999999999999999999999999985 489999999999986422111
Q ss_pred HHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEehHHHH
Q 026712 157 LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLE-TKYRRLPVVDGYG-KLVGLITRGNVV 220 (234)
Q Consensus 157 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~-~~~~~vpVv~~~~-~~vGiit~~dll 220 (234)
...++.++|..+++++.+++++.++++.|.+ ++.+.+||+++++ +++|++|..|++
T Consensus 60 --------~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 60 --------RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred --------ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 1116889999889999999999999999999 7999999999875 999999999974
No 88
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.50 E-value=4.1e-13 Score=118.91 Aligned_cols=129 Identities=28% Similarity=0.342 Sum_probs=109.1
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEc-CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
....+|+++|+|+.++.+++.+.+++++.+.+.+++++++||++ +.+.++|+++.+|++.......
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~------------- 269 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ------------- 269 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc-------------
Confidence 45789999999999999999999999999999999999999999 4478999999999997632111
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~ 228 (234)
..........+++++++..++.++++.|.+.+.|...|+|+.|.+.|+||..||++.+.....
T Consensus 270 -----------------~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 270 -----------------SDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred -----------------cccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence 001111112389999999999999999999999999999999999999999999999986443
No 89
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.36 E-value=1e-11 Score=92.83 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=80.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+|+.+|+.+.......... ... .....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~--~~~--------------~~~~~ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRV--QPE--------------DETKQ 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccccc--ccc--------------hhhcc
Confidence 57899999999999999998999999999998999999999999986432111000 000 00000
Q ss_pred cCCCcccccc---------cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 026712 164 TNGKVVGDLM---------TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYG 208 (234)
Q Consensus 164 ~~~~~v~~im---------~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~ 208 (234)
.....+.++| ..+++++.+++++.+|++.|.+++++.+||+++++
T Consensus 66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 0111223343 56789999999999999999999999999998543
No 90
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.36 E-value=4.5e-12 Score=106.61 Aligned_cols=129 Identities=25% Similarity=0.345 Sum_probs=110.4
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
.+.++|.|+|.++.++..++.+++.+++.+.+.++.+.++|++.++ +.++|+++.+|+++++....
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~------------- 263 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN------------- 263 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC-------------
Confidence 4588999999998899999999999999999999999999999765 57999999999999753221
Q ss_pred chhhhhHHHHHHHhhcCCCcccccc--cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLM--TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
+..-.+++ -.+|+++++.+++.+-+..|.+++-+.-.|||+.|.+.|+||.+||+++++..
T Consensus 264 -----------------~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 264 -----------------EFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred -----------------cccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcc
Confidence 11122222 25699999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 026712 227 KR 228 (234)
Q Consensus 227 ~~ 228 (234)
..
T Consensus 327 ft 328 (423)
T COG4536 327 FT 328 (423)
T ss_pred cc
Confidence 55
No 91
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.26 E-value=7.2e-11 Score=102.59 Aligned_cols=126 Identities=27% Similarity=0.371 Sum_probs=99.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSK 163 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (234)
++..+..+.++.+|++.|...+++.+||+|++|+.+|.++..|+............... . +....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~----------~---l~~~~-- 302 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLS----------C---LSEAL-- 302 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchh----------H---HHHHh--
Confidence 58899999999999999999999999999999999999999999876433322211100 0 00000
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~ 228 (234)
.....-...++++.+++++.+++..|..+++|++.|||++|.++|+||..|++.++.....
T Consensus 303 ----~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 303 ----SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred ----hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence 1111112347999999999999999999999999999998999999999999999987643
No 92
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.25 E-value=3e-11 Score=76.48 Aligned_cols=56 Identities=46% Similarity=0.824 Sum_probs=53.0
Q ss_pred ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 169 VGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 169 v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
|+++|.++++++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999875
No 93
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=99.15 E-value=7.4e-11 Score=104.87 Aligned_cols=168 Identities=21% Similarity=0.224 Sum_probs=127.5
Q ss_pred ccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-----CcEEEEEehHHHh
Q 026712 54 AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-----WKLVGVVSDYDLL 128 (234)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-----~~~~Givt~~dl~ 128 (234)
.+..+..++.+......++.+++|+|++ ++++++.-..+..+.++++...++.+||+|+. +++.|+|-+..++
T Consensus 563 i~LkgvP~Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~ 640 (762)
T KOG0474|consen 563 IQLKGVPFLEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL 640 (762)
T ss_pred hhccCCccccCCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH
Confidence 3445555666666666789999999999 99999999999999999999999999999863 4789999999887
Q ss_pred hhhccCCCCCCCCCC-------CCCccchhhhhHHHHHHHhhc----CCCcccccccCCCeEecCCCCHHHHHHHHHHcC
Q 026712 129 ALDSISGGNQNDTSL-------FPNVNSTWKTFNELQRLLSKT----NGKVVGDLMTPAPLVVHENTNLEDAARLLLETK 197 (234)
Q Consensus 129 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~ 197 (234)
..+........+... .....+.+++++.+++..... --..+..+|++.|+++.+++++..+..+|.+-|
T Consensus 641 vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lG 720 (762)
T KOG0474|consen 641 VLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLG 720 (762)
T ss_pred HHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhc
Confidence 664433222221110 111123333444444444322 235688999999999999999999999999999
Q ss_pred CCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 198 YRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 198 ~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
.+++.||+..+..+|++|++|+..+=
T Consensus 721 LRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 721 LRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred ceeEEEecCCCceeEEEehhhhhhHH
Confidence 99999999888999999999999654
No 94
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.3e-10 Score=92.18 Aligned_cols=128 Identities=22% Similarity=0.370 Sum_probs=109.0
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
....|+++|.++.+..++..+.++.+++..+.++.++++||+.++ +.+.|++..+||++.+..+.
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~-------------- 130 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA-------------- 130 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc--------------
Confidence 366899999998899999999999999999999999999999765 57999999999998632111
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhhh
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIKR 228 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~~ 228 (234)
....+.++. ++.++|+++-.+...++.|.....|...|+|+.|-+-|.||..|+++.++....
T Consensus 131 ---------------~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 131 ---------------EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred ---------------ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence 112345553 668999999999999999999999999999999999999999999999985543
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.14 E-value=1.2e-10 Score=73.62 Aligned_cols=55 Identities=42% Similarity=0.601 Sum_probs=51.7
Q ss_pred cccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 75 v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
|+++|.+ ++.++++++++.++.+.|.+++.+.+||+|++|+++|++|.+|+++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789998 899999999999999999999999999999999999999999998763
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.09 E-value=2.6e-09 Score=92.53 Aligned_cols=109 Identities=27% Similarity=0.379 Sum_probs=93.7
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhc
Q 026712 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKT 164 (234)
Q Consensus 85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (234)
.....++.+..++.+.|...+...+.|+|+++++.|.++.+++.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------------- 299 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-------------------------------- 299 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh--------------------------------
Confidence 345566778999999999999999999999999999999999976421
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
....+.+.+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.++++.+...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 300 KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 12346677777788999999999999999999998 99999999999999999999998764
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=2.8e-09 Score=93.49 Aligned_cols=121 Identities=24% Similarity=0.257 Sum_probs=97.7
Q ss_pred cccccccccCCC-ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712 73 YTVGDFMTKKED-LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151 (234)
Q Consensus 73 ~~v~~im~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
.++.++|.+... .+...++.+..+++..|...+.+.++|+|+++++.|+++.+++.+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------- 334 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT------------------- 334 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------------
Confidence 456677754101 123346678999999999999999999999999999999999976421
Q ss_pred hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
....+.+.+.....++.+++++.+++..+.++... +||||++|+++|+|+..++++.+.+.
T Consensus 335 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 335 -------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred -------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 12346666777788999999999999999987765 99999999999999999999998654
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.04 E-value=5.9e-10 Score=94.80 Aligned_cols=108 Identities=32% Similarity=0.530 Sum_probs=96.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcC---CCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHH
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRL 160 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
+++++.++.++.++++....+++..+||.+. ..+++|+||.+|+-..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------ 166 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------ 166 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence 4588999999999999999999999999864 2589999999999642
Q ss_pred HhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 161 LSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 161 ~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
+.....+.++|++++++.+...++.++-+++.+++...+||||++|+++.+|++.|+.+.-
T Consensus 167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred --hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 2456789999999999999999999999999999999999999999999999999998753
No 99
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.79 E-value=4.9e-09 Score=75.88 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=51.1
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.+++++|.+ ++..+++++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999988 7899999999999999999999999999999899999999999864
No 100
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.77 E-value=2.7e-09 Score=95.23 Aligned_cols=115 Identities=13% Similarity=0.250 Sum_probs=92.4
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTW 151 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
..+++++|.+ ++.++++++++.+|++.|.+++...+||+|++|+++|+||.+|+.+.+.
T Consensus 194 ~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~------------------- 252 (449)
T TIGR00400 194 EEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ------------------- 252 (449)
T ss_pred CCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH-------------------
Confidence 4579999998 7889999999999999999999999999999999999999999997631
Q ss_pred hhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 152 KTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 152 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
.....++|....++..+++.+.+++..|.+++..+++|. .+.|+++ ..++..+.+.
T Consensus 253 --------------~~~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~ 308 (449)
T TIGR00400 253 --------------SEATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDL 308 (449)
T ss_pred --------------hhhHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHH
Confidence 122356666555555567788999999999999888876 4677777 6777665544
No 101
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.63 E-value=9.6e-08 Score=68.48 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=51.6
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.. ++.++.+++++.+|+++|.+++...+||+|++|+++|+||.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 4568999987 7889999999999999999999999999998899999999999975
No 102
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.62 E-value=2.2e-07 Score=83.84 Aligned_cols=117 Identities=30% Similarity=0.403 Sum_probs=80.9
Q ss_pred ccccccccc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccch
Q 026712 72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNST 150 (234)
Q Consensus 72 ~~~v~~im~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (234)
..++.++|. . +++++++++++.++++.|.+.+.+.+||+|++++++|+||.+|+++........
T Consensus 146 ~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~------------- 210 (486)
T PRK05567 146 SQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNAC------------- 210 (486)
T ss_pred CCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcc-------------
Confidence 457899998 4 789999999999999999999999999999999999999999998753110000
Q ss_pred hhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 026712 151 WKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDG-YGKLVGLITRGNVVR 221 (234)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~-~~~~vGiit~~dll~ 221 (234)
........+...|.. .+ .-.+.++.|.+.+++.+ ++|. +|+..|+++.-+.++
T Consensus 211 ----------~d~~g~l~V~aai~~-----~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~ 264 (486)
T PRK05567 211 ----------KDEQGRLRVGAAVGV-----GA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK 264 (486)
T ss_pred ----------cccCCCEEEEeeccc-----Cc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence 000111223333332 22 12678888888999855 5553 577766555444443
No 103
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.61 E-value=1.5e-08 Score=92.64 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=97.4
Q ss_pred Cccccccccc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccc
Q 026712 71 GTYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNS 149 (234)
Q Consensus 71 ~~~~v~~im~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
...+|+++|+ + ++.++++++++.++.+.|.+.+...+||+|++|+++|+|+.+|+.+.....-... +.........
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLV-D~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILV-DHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEE-cCcccccccc
Confidence 4678999999 6 8999999999999999999999999999999999999999999987421100000 0000000000
Q ss_pred hhhhhHHHHHHHhhcCCCcccccccCCCeEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 150 TWKTFNELQRLLSKTNGKVVGDLMTPAPLVV---HENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
+.+ . .....--...++.++++..++.+ +...+...+.+.|.+.++...|++. ...+.||++.++.+++
T Consensus 321 ~~~---~-~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 321 GIE---E-AEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred chh---h-ceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 000 0 00000012335667777766554 4466677899999999998888876 4578888888877653
No 104
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.59 E-value=1.3e-07 Score=77.70 Aligned_cols=65 Identities=29% Similarity=0.536 Sum_probs=59.9
Q ss_pred HHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 157 LQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 157 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.+.......+....++|+++++++..++++.+|.+.|.+++++.+||+|++.+++|+|+++|+++
T Consensus 235 lqa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~ 299 (382)
T COG3448 235 LQALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLK 299 (382)
T ss_pred HHHHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhh
Confidence 34555567788899999999999999999999999999999999999999999999999999998
No 105
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.58 E-value=1.2e-07 Score=76.53 Aligned_cols=62 Identities=32% Similarity=0.466 Sum_probs=58.2
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
-++.++.++|+++++++.+++++.+++..|.+++++..||+| +++++|++|.+|+.+.+.+.
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd-~dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD-DDKIVGIITLSDIAKAIANG 230 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec-CCceEEEEEHHHHHHHHHcC
Confidence 466789999999999999999999999999999999999999 56999999999999999875
No 106
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.56 E-value=5.4e-07 Score=81.20 Aligned_cols=110 Identities=21% Similarity=0.169 Sum_probs=74.6
Q ss_pred CceecCCCccCCCccccCc---ccccCcceeeccccc---cc--ccccccccccccCCCCcCccccccccccCCCceeec
Q 026712 18 NGVINSVPHLQLPITVATP---SHLSKRLRFFTVSRE---VK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVK 89 (234)
Q Consensus 18 ~g~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~ 89 (234)
+|++..|+.+.++.++... ........++..... .. ......++... ......+|+++|++..++++++
T Consensus 101 ~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~---~~~~~~~V~dIMt~~~~~itv~ 177 (502)
T PRK07107 101 AGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS---RMSLDTKVKDFMTPFEKLVTAN 177 (502)
T ss_pred cCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc---ccCCCCCHHHHhCCCCCeEEEC
Confidence 4566677888888877222 122223333333321 11 12222222111 1234567999998534688999
Q ss_pred CCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 90 TTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 90 ~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
+++++.+|+++|.++++..+||+|++++++|+||.+|+++.
T Consensus 178 ~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 178 EGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 99999999999999999999999988999999999999975
No 107
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.52 E-value=9.3e-07 Score=79.24 Aligned_cols=57 Identities=33% Similarity=0.425 Sum_probs=53.4
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
.++.++|.+ ++.++++++++.+|+++|.+++...+||+|++++++|+||.+||++..
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT 204 (479)
T ss_pred CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 469999998 899999999999999999999999999999889999999999999863
No 108
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.50 E-value=3.6e-07 Score=65.74 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=52.7
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
+...++.++|.. ++.++.+++++.+|++.|.+++...+||+|++|+++|+|+.+|+.+
T Consensus 56 ~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 GCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred cccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 345678999987 7899999999999999999999999999998899999999999864
No 109
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.49 E-value=5.2e-07 Score=67.71 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=64.1
Q ss_pred cchhhhhHHHHHHHhhc--CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 148 NSTWKTFNELQRLLSKT--NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 148 ~~~~~~~~~~~~~~~~~--~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
+..+..++.+-..+... ....+..+|+.+++.+.+++++.+++.+|.++|++.+||++ +|.++|-||-.+|.+.+.+
T Consensus 44 dPrlSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~-~~k~VGsItE~~iv~~~le 122 (187)
T COG3620 44 DPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE-EDKVVGSITENDIVRALLE 122 (187)
T ss_pred CccHHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee-CCeeeeeecHHHHHHHHhc
Confidence 34444444444444433 33467899999999999999999999999999999999999 5999999999999999877
Q ss_pred hh
Q 026712 226 IK 227 (234)
Q Consensus 226 ~~ 227 (234)
..
T Consensus 123 ~~ 124 (187)
T COG3620 123 GM 124 (187)
T ss_pred cc
Confidence 63
No 110
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=3.3e-07 Score=66.24 Aligned_cols=55 Identities=33% Similarity=0.489 Sum_probs=51.2
Q ss_pred CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 026712 167 KVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVR 221 (234)
Q Consensus 167 ~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~ 221 (234)
.++.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5689999989999999999999999999999999999998899999999999864
No 111
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.46 E-value=2.8e-06 Score=76.17 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=53.5
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
.+++++|++ +++++++++++.+|+++|.+++...+||+|++++++|+||.+||++..
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT 202 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 579999998 899999999999999999999999999999889999999999999863
No 112
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.44 E-value=6.7e-07 Score=77.95 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=97.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEc-CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLS 162 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (234)
.+..+.+..++.++...+.+.+++++||.| +.+.+.+++|.+.+++.+........-.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~--------------------- 221 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLP--------------------- 221 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccH---------------------
Confidence 448999999999999999999999999998 5579999999999998754443322100
Q ss_pred hcCCCcccccc---cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 163 KTNGKVVGDLM---TPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 163 ~~~~~~v~~im---~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
.....++.++- ..++..+..++++.+|+++|...++..+|||+.+|..+|+++..|+.....+.
T Consensus 222 ~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 222 SLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred HHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence 01112222221 23688999999999999999999999999999999999999999999887654
No 113
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.43 E-value=2.5e-06 Score=76.95 Aligned_cols=59 Identities=34% Similarity=0.430 Sum_probs=54.1
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
..+++++|++..++++++++.++.+|.++|.+++...+||+|++++++|+||.+|+++.
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 56799999864468899999999999999999999999999999999999999999976
No 114
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.43 E-value=3.3e-06 Score=72.36 Aligned_cols=115 Identities=24% Similarity=0.176 Sum_probs=84.6
Q ss_pred hhcccCceecCCCccCCCccccC---cccccCcceeecccccccccccccccccccCCC--CcCccccccccccCCCcee
Q 026712 13 ARLNANGVINSVPHLQLPITVAT---PSHLSKRLRFFTVSREVKAFAHNGVGITNSVPP--RNGTYTVGDFMTKKEDLHA 87 (234)
Q Consensus 13 ~~~~~~g~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~im~~~~~~~~ 87 (234)
+..-++|++++|.+++|..++.. .+.+..|..+.. ............+...+... ......+.++|.+ +.++
T Consensus 107 vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pv-Te~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~--~~~~ 183 (503)
T KOG2550|consen 107 VKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPV-TEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTK--NPVT 183 (503)
T ss_pred HHHhhcccccCCcccCCcccchhhhhhccccccccccc-ccCCcccceeEEEEehhhhhhhhcccchhhhhccc--cccc
Confidence 44568999999999999999933 344555443322 22223333333333333333 3346679999998 6689
Q ss_pred ecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 88 v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
.+.+.+++++.+++.+++...+||||++|+++.+|++.||.+.
T Consensus 184 ~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 184 GAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 9999999999999999999999999999999999999999874
No 115
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.39 E-value=7.7e-07 Score=80.31 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=78.4
Q ss_pred cCceecCCCccCCCccccCcc---cccCcceeeccccc---cc--ccccccccccccCCCCcCccccccccccCCCceee
Q 026712 17 ANGVINSVPHLQLPITVATPS---HLSKRLRFFTVSRE---VK--AFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAV 88 (234)
Q Consensus 17 ~~g~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v 88 (234)
++|++.+|..+.++.++.... ....+..++..... .. ......++.. ..+...+|.++|++..+++++
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~----v~~~~~~V~eIMt~~~~lvtv 178 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF----VNDRETKLSEVMTSDDDLVTA 178 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh----ccccCCcHHHHhccCCCcEEE
Confidence 678888899998888882221 22233333333221 11 1111122211 113467899999972238899
Q ss_pred cCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhcc
Q 026712 89 KTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133 (234)
Q Consensus 89 ~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~ 133 (234)
++++++.+|+++|.+++...+||+|++++++|+||.+|+.+....
T Consensus 179 ~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 179 PAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999999988999999999999987543
No 116
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.39 E-value=8.5e-07 Score=64.45 Aligned_cols=56 Identities=36% Similarity=0.576 Sum_probs=51.6
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++
T Consensus 68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 4578899987 8899999999999999999999999999998899999999999975
No 117
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.36 E-value=1e-06 Score=63.15 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=50.1
Q ss_pred ccccccccccCCCceeecCC--CCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTT--TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~--~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++.++ +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 3578899987 78888887 78999999999999999999998899999999999975
No 118
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=1.3e-06 Score=62.58 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=51.2
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ .+.++.+++++.++++.|.+.+...+||++++|+++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 4568899987 7889999999999999999999999999998899999999999963
No 119
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.35 E-value=2.3e-06 Score=76.82 Aligned_cols=133 Identities=21% Similarity=0.327 Sum_probs=92.7
Q ss_pred CceeecCC-CCHHHHHHHHHhCCCCeeEEEc--CCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHH-H-
Q 026712 84 DLHAVKTT-TTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNEL-Q- 158 (234)
Q Consensus 84 ~~~~v~~~-~~v~~a~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 158 (234)
...+++.+ ++++|...+|.+..++.+||+= +..+++|++.++|+...+... ...++....... .|... .
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~a-r~~q~~~~~~~~-----~f~~~~~~ 630 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNA-RKIQSFIVTTSI-----YFNDPSPS 630 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhh-ccccccceeccc-----ccCCCCcc
Confidence 35666665 8999999999999999888883 346899999999997553211 111111000000 00000 0
Q ss_pred HHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 159 RLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 159 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
..........++++|+..|.++...++..-++++|.+-+...+.|.. +|++.|+||++|+++..
T Consensus 631 ~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 631 AVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred ccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 00001223457889999999999999999999999999998887776 89999999999999864
No 120
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.35 E-value=1.1e-06 Score=75.12 Aligned_cols=58 Identities=28% Similarity=0.379 Sum_probs=53.3
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
...+++++|.+ ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+.++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 34568999998 88999999999999999999999999999988999999999999864
No 121
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=1.6e-06 Score=63.06 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=46.8
Q ss_pred ccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHh
Q 026712 76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128 (234)
Q Consensus 76 ~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~ 128 (234)
.++|.+ ++.++++++++.+|++.|.+++.+.+||+|++++++|+||.+|+.
T Consensus 71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 356776 789999999999999999999999999999889999999999985
No 122
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.32 E-value=1.5e-06 Score=61.64 Aligned_cols=56 Identities=32% Similarity=0.475 Sum_probs=51.3
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..+++++|.. ++.++++++++.++.+.|.+.+...+||++++|+++|+++..|+.+
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 4568899987 7899999999999999999999999999998899999999999974
No 123
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=1.4e-06 Score=63.03 Aligned_cols=59 Identities=20% Similarity=0.441 Sum_probs=50.8
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC---CcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl~~ 129 (234)
...+++++|....++.++++++++.+++++|.+++...+||+|++ |+++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 355688899732257899999999999999999999999999987 69999999999864
No 124
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=1.6e-06 Score=62.19 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=50.4
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.. ++.++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 4578899987 7899999999999999999999999999987 99999999999975
No 125
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=1.6e-06 Score=61.73 Aligned_cols=55 Identities=40% Similarity=0.596 Sum_probs=49.9
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++.+++++.+++..|.+++...+||+++ |+++|+||..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 3468889987 7899999999999999999999999999997 89999999999864
No 126
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=2.1e-06 Score=61.16 Aligned_cols=57 Identities=33% Similarity=0.399 Sum_probs=51.3
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||++++|+++|+++.+|+++
T Consensus 55 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 LDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 34578899987 7899999999999999999988899999998899999999999974
No 127
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.30 E-value=2.1e-06 Score=61.25 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=52.1
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
+...++.++|.+ ++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+.+
T Consensus 55 ~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 345678899987 7899999999999999999999899999998899999999999964
No 128
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=1.5e-06 Score=62.33 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=50.4
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+...+.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4568899975324678999999999999999999999999998889999999999864
No 129
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.29 E-value=1.7e-06 Score=60.82 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=42.4
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhh
Q 026712 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA 129 (234)
Q Consensus 85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~ 129 (234)
+.++.+++++.+|+++|.+++...+||+|++ |+++|+|+.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 6789999999999999999999999999987 89999999999975
No 130
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.28 E-value=2.3e-06 Score=60.86 Aligned_cols=57 Identities=23% Similarity=0.446 Sum_probs=51.8
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
..+++++|.+ ++.++.+++++.++++.|.+.+...+||+|++++++|+|+..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 4568899987 78999999999999999999999999999988999999999999863
No 131
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.28 E-value=1.8e-06 Score=61.55 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=50.5
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.+ ++.++++++++.++++.|.+.+...+||++++++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 578899987 7889999999999999999999999999998899999999999964
No 132
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.28 E-value=3.6e-06 Score=49.90 Aligned_cols=47 Identities=47% Similarity=0.736 Sum_probs=42.9
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 026712 177 PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 177 ~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l 223 (234)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999878999999999998764
No 133
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.28 E-value=2.1e-06 Score=61.18 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=49.8
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.. ++.++.+++++.++++.|.+.+...+||++ +|+++|+||.+|+.+
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4579999987 788999999999999999999999999998 589999999999975
No 134
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.28 E-value=3.6e-06 Score=60.94 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=45.5
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++..+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 5788999999999999999999999999998899999999999998654
No 135
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.26 E-value=3.3e-06 Score=59.56 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=49.3
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
+++++|.+ ....+.+++++.++++.|.+.+...+||+|++++++|+|+.+++.+
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 47888987 6788999999999999999999999999998899999999999974
No 136
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.26 E-value=2.8e-06 Score=59.97 Aligned_cols=55 Identities=27% Similarity=0.501 Sum_probs=50.3
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.+++++|.+ .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 468899987 7889999999999999999999899999998899999999999974
No 137
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.26 E-value=2.3e-05 Score=70.07 Aligned_cols=58 Identities=31% Similarity=0.491 Sum_probs=53.4
Q ss_pred ccccccccc-cCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 72 ~~~v~~im~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
..++.++|. + ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus 142 ~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 557999998 4 689999999999999999999999999999999999999999999763
No 138
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.26 E-value=2.8e-06 Score=60.63 Aligned_cols=55 Identities=38% Similarity=0.569 Sum_probs=50.8
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.+ ++.++++++++.++++.|...+...+||++++++++|+|+..|+++
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 469999988 7889999999999999999999999999998899999999999974
No 139
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.25 E-value=2.7e-06 Score=61.30 Aligned_cols=56 Identities=39% Similarity=0.719 Sum_probs=51.2
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 3568899987 7899999999999999999999999999998899999999999975
No 140
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.25 E-value=2.8e-06 Score=60.13 Aligned_cols=55 Identities=25% Similarity=0.482 Sum_probs=50.4
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.+ .+.++++++++.++.+.|.+.+...+||++++|+++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 468889987 7899999999999999999999999999998899999999999974
No 141
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.25 E-value=2.4e-06 Score=60.91 Aligned_cols=56 Identities=32% Similarity=0.507 Sum_probs=51.3
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcC-CCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+...+||+++ +++++|+++.+|+..
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 3679999988 7899999999999999999999999999987 789999999999864
No 142
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.25 E-value=3.1e-06 Score=60.70 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=50.6
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC--CcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+|++ |+++|+|+.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 3458888987 78999999999999999999999999999987 79999999999975
No 143
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=2.8e-06 Score=61.80 Aligned_cols=56 Identities=39% Similarity=0.695 Sum_probs=50.9
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+...+||++++|+++|+||..|+.+
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3468888987 7999999999999999999999999999998789999999999975
No 144
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.23 E-value=3.6e-06 Score=59.73 Aligned_cols=57 Identities=33% Similarity=0.454 Sum_probs=51.6
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...+++++|.+ ++.++++++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 35678999987 7899999999999999999999999999998899999999999974
No 145
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=3e-06 Score=61.36 Aligned_cols=56 Identities=29% Similarity=0.484 Sum_probs=51.1
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 4568889987 7899999999999999999999999999998899999999999975
No 146
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=3e-06 Score=60.30 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=50.3
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.. ++.++++++++.++++.|.+++...+||++++|+++|+++.+|+.+
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 468899987 7899999999999999999999999999998799999999999964
No 147
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.22 E-value=3.6e-06 Score=59.81 Aligned_cols=56 Identities=39% Similarity=0.612 Sum_probs=51.0
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||++ +|+++|+||.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45678999987 789999999999999999999999999999 789999999999974
No 148
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.22 E-value=6.5e-06 Score=61.30 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=46.8
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+|+..|+++++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~ 52 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTN 52 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhc
Confidence 578899999999999999999999999999889999999999999987643
No 149
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=4.1e-06 Score=60.62 Aligned_cols=57 Identities=35% Similarity=0.550 Sum_probs=51.6
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.. ++.++++++++.++++.|.+.+.+.+||++++|+++|+++..|+.+
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 35578899987 7899999999999999999999999999998889999999999974
No 150
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=4.6e-06 Score=59.28 Aligned_cols=55 Identities=38% Similarity=0.573 Sum_probs=50.2
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+...+||+++ |+++|+|+..|+.+
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 4578999987 7899999999999999999999999999987 89999999999974
No 151
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=5.1e-06 Score=60.75 Aligned_cols=51 Identities=22% Similarity=0.434 Sum_probs=46.4
Q ss_pred cccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 77 ~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
+.|.+ ++.++++++++.+|+++|.+++.+.+||+|++++++|+||..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 45666 7899999999999999999999999999998899999999999975
No 152
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.19 E-value=3.1e-06 Score=62.68 Aligned_cols=55 Identities=38% Similarity=0.505 Sum_probs=50.5
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+| +|+++|+||.+|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4578899987 789999999999999999999999999999 799999999999875
No 153
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.19 E-value=3.9e-06 Score=60.20 Aligned_cols=55 Identities=31% Similarity=0.378 Sum_probs=48.7
Q ss_pred cccccccccCCCceeecC--CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKT--TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~--~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.+++++|.. ...++.. ++++.++++.|.+++...+||++++|+++|+||.+|+.+
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 458899987 5667755 999999999999999999999998899999999999864
No 154
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=3.7e-06 Score=60.00 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=50.1
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.+ ++.++++++++.++++.|.+.+...+||+|+ |+++|+||.+|+.+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 4578899987 7889999999999999999999889999997 89999999999975
No 155
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=2.5e-06 Score=62.48 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=48.1
Q ss_pred cCccccccccccCCCcee--e----cCCCCHHHHHHHHHhCCCCeeEEEcCC-CcEEEEEehHHHhh
Q 026712 70 NGTYTVGDFMTKKEDLHA--V----KTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA 129 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~--v----~~~~~v~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~ 129 (234)
+...+++++|.+ +... + .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 61 ~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 61 RSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred chheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 345679999986 4333 2 368899999999999999999999987 79999999999975
No 156
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.18 E-value=5.1e-06 Score=58.96 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=50.3
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.. ++.+++++.++.++++.|.+.+...+||++++|+++|+|+.+|+.+
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 568889987 7899999999999999999999999999998899999999999974
No 157
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=5.1e-06 Score=59.18 Aligned_cols=54 Identities=44% Similarity=0.622 Sum_probs=49.8
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
++.++|.. ++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+.+
T Consensus 59 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 58899987 7899999999999999999999999999998899999999999975
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.17 E-value=5e-06 Score=58.86 Aligned_cols=56 Identities=34% Similarity=0.477 Sum_probs=48.8
Q ss_pred ccccccccccCCCceeecC-CCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKT-TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~-~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.. .+..+.. ++++.++++.|.+.+...+||++++|+++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 4578899976 5566666 999999999999999999999998899999999999974
No 159
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.16 E-value=6.2e-06 Score=61.40 Aligned_cols=55 Identities=29% Similarity=0.535 Sum_probs=50.2
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..+++++|.+ ++..+.+++++.++++.|.+.+...+||+++ |+++|+|+..|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4579999987 7889999999999999999999999999986 89999999999975
No 160
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.15 E-value=4.7e-06 Score=60.20 Aligned_cols=56 Identities=36% Similarity=0.621 Sum_probs=50.7
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.. ++.++++++++.++++.|.+.+...+||+|+ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 35578889987 7899999999999999999999999999997 89999999999974
No 161
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.14 E-value=6.8e-06 Score=58.45 Aligned_cols=56 Identities=29% Similarity=0.334 Sum_probs=50.4
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.+ ++.++++++++.++++.|.+++...+||+++ ++++|+|+..|+.+
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 35578899987 7899999999999999999999999999985 89999999999975
No 162
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=7e-06 Score=57.64 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=49.0
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~ 128 (234)
.++.++|.+ ++.++++++++.++++.|.+.+...+||+++ |+++|++|.+|+.
T Consensus 51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 458899987 7899999999999999999999999999997 9999999999986
No 163
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.13 E-value=7.9e-06 Score=57.95 Aligned_cols=55 Identities=44% Similarity=0.668 Sum_probs=50.2
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.+ ++.++.+++++.++++.|.+.+...+||++++++++|+|+..|+.+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 467788987 8999999999999999999999999999998899999999999974
No 164
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=7.8e-06 Score=57.99 Aligned_cols=54 Identities=22% Similarity=0.524 Sum_probs=49.5
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
++.++|.+ ++.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 48888977 7899999999999999999999999999998899999999999964
No 165
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.12 E-value=7.3e-06 Score=58.25 Aligned_cols=55 Identities=40% Similarity=0.517 Sum_probs=50.3
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.. ++.++++++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 4578899987 7899999999999999999999999999987 89999999999974
No 166
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.12 E-value=7.5e-06 Score=57.74 Aligned_cols=53 Identities=30% Similarity=0.485 Sum_probs=48.1
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
++.++|.+ ...+++++.++.++++.|.+++...+||++ +|+++|++|.+|+.+
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57788887 788999999999999999999999999998 589999999999974
No 167
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.11 E-value=1.1e-05 Score=56.26 Aligned_cols=47 Identities=34% Similarity=0.480 Sum_probs=43.4
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
+++.+.+++++.++++.|.+.+...+||+|++|+++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 57889999999999999999999999999988999999999999863
No 168
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11 E-value=7.7e-06 Score=59.21 Aligned_cols=55 Identities=36% Similarity=0.541 Sum_probs=50.5
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.+++++|.. ++.++++++++.++++.|.+.+...+||++++++++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 468899987 7899999999999999999999999999998899999999999974
No 169
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.11 E-value=2.1e-05 Score=57.62 Aligned_cols=52 Identities=33% Similarity=0.545 Sum_probs=47.2
Q ss_pred CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 175 PAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 175 ~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
+++.++++++++.++++.|.+.+...+||+|++|+++|+++..|+++.+.+.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~ 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh
Confidence 4688899999999999999999999999999889999999999999876653
No 170
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.10 E-value=1.4e-05 Score=47.33 Aligned_cols=46 Identities=39% Similarity=0.626 Sum_probs=41.8
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 85 ~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
+.++++++++.++.+.|.+.+.+.+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 4678999999999999999999999999988899999999999764
No 171
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.10 E-value=9.9e-06 Score=57.65 Aligned_cols=56 Identities=30% Similarity=0.592 Sum_probs=49.9
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||++++ +++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 34578899987 78899999999999999999999999999875 9999999999974
No 172
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.09 E-value=7.1e-06 Score=70.36 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=52.7
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
+...+|+++|.+ ++.++.+++++.+|++.|.+++...+||++ +++++|+||..|+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 445689999998 899999999999999999999999999997 5799999999999874
No 173
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.07 E-value=9.5e-06 Score=57.63 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=47.6
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|. ++.++.+++++.++++.|.+++.+.+||++++|+++|+||.+|+.+
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 35666664 4788999999999999999999999999998899999999999974
No 174
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05 E-value=1.2e-05 Score=59.30 Aligned_cols=53 Identities=36% Similarity=0.588 Sum_probs=49.2
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
++.++|.+ ++..+.+++++.++.+.|.+.+...+||+++ |+++|++|..|+++
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 78899987 7899999999999999999999999999998 99999999999974
No 175
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05 E-value=1.9e-05 Score=56.42 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=45.7
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
+++++..++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~ 51 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG 51 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence 47789999999999999999999999999988999999999999987753
No 176
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.02 E-value=8.2e-06 Score=68.80 Aligned_cols=104 Identities=25% Similarity=0.303 Sum_probs=75.4
Q ss_pred CCccCCCcccc---CcccccCcceeecccccccccccccccccccCCCCcCccccccccccCCCceeecCCCCHHHHHHH
Q 026712 24 VPHLQLPITVA---TPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALER 100 (234)
Q Consensus 24 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~ 100 (234)
+.+|..+.++. .-..+....||........ ...-+..+...+..+..++..+|++ ++.++.+.+++..+.+.
T Consensus 200 ~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~k---vvGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~ 274 (432)
T COG4109 200 TSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMK---VVGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQM 274 (432)
T ss_pred ceeccccccHHHHHHHHHHcCCCccceecccce---EEEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHH
Confidence 45555666551 1123334455654443322 1112223344556678899999999 89999999999999999
Q ss_pred HHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712 101 LVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (234)
Q Consensus 101 ~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 132 (234)
|...++..+||+|++.+++|+||++|+++.+.
T Consensus 275 MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 275 MIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred HHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 99999999999999999999999999998754
No 177
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.01 E-value=1.5e-05 Score=57.45 Aligned_cols=56 Identities=39% Similarity=0.567 Sum_probs=50.4
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.++|.+ ++.++++++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 34568899987 7899999999999999999999999999987 89999999999975
No 178
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.00 E-value=3.2e-05 Score=56.54 Aligned_cols=49 Identities=37% Similarity=0.588 Sum_probs=44.7
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV 50 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence 4677899999999999999999999999998899999999999997654
No 179
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.95 E-value=2.4e-05 Score=56.00 Aligned_cols=53 Identities=45% Similarity=0.692 Sum_probs=49.0
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHh-CCCCeeEEEcCCC-cEEEEEehHHHh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDW-KLVGVVSDYDLL 128 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~-~~~~~~pVvd~~~-~~~Givt~~dl~ 128 (234)
++.++|.. ++.++.++.++.++.+.|.+ .+...+||+++++ +++|++|..|+.
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 68999997 78999999999999999999 7999999999886 999999999973
No 180
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.94 E-value=1.5e-05 Score=71.13 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=62.2
Q ss_pred ccccccccccccCC-CCcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712 54 AFAHNGVGITNSVP-PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (234)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 132 (234)
+.....++...... ......+|+++|+. +++++..++-+.||.-.|.+.++.++||++ +|+++|+||..||++.+.
T Consensus 194 GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 194 GIVTRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ceeehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 33444444444333 34567799999999 999999999999999999999999999987 699999999999998753
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.94 E-value=3.1e-05 Score=69.37 Aligned_cols=62 Identities=34% Similarity=0.535 Sum_probs=56.5
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 164 TNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 164 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
....++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++.+.+
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999988999999999999987654
No 182
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.93 E-value=2.8e-05 Score=55.13 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=45.0
Q ss_pred ccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 78 im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
+|.+ ++.++++++++.++.+.|.+.+...+||++ +|+++|+|+.+|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 7877 788999999999999999999999999995 689999999999974
No 183
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.90 E-value=2.8e-05 Score=55.89 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=48.6
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCC---CeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRI---TGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~---~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...+++++|.+ ++..+++++++.++++.|.+.+. ...||++++|+++|+|+..|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 35579999987 78999999999999999988764 34568888899999999999974
No 184
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.89 E-value=2.9e-05 Score=65.12 Aligned_cols=115 Identities=26% Similarity=0.292 Sum_probs=88.8
Q ss_pred CcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
.....++.++|.+.+....-.+...-..+.+.+.+.....+.+++.+++.+|+++..+....
T Consensus 270 ~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------ 331 (386)
T COG4175 270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------ 331 (386)
T ss_pred hhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------
Confidence 34566888999852122222333444578888888887788888877889999999888641
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
.+...+..+..++++.+.+....+.+. .++|+|++|+++|+|+...+++.+..
T Consensus 332 -----------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 -----------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred -----------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 345668889999999999998887776 78999999999999999999998864
No 185
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.89 E-value=2.8e-05 Score=64.67 Aligned_cols=58 Identities=31% Similarity=0.386 Sum_probs=53.2
Q ss_pred CcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 167 KVVGDLMTPA-PLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 167 ~~v~~im~~~-~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
.++.++|.++ ++++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.+.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 5788999888 999999999999999999999999999998899999999999998654
No 186
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.87 E-value=6.2e-05 Score=66.56 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=55.3
Q ss_pred hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 026712 163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAAL 224 (234)
Q Consensus 163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~ 224 (234)
...+.+++++|++ ++.+++.++++.++++.+.++++.++||.+++ ++++|+|+.+|++..+.
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 4567899999986 78999999999999999999999999999864 68999999999997643
No 187
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.86 E-value=4.1e-05 Score=53.68 Aligned_cols=53 Identities=43% Similarity=0.729 Sum_probs=48.5
Q ss_pred cccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 75 v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
+.++|.. +...+++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 6678877 7889999999999999999999999999999899999999999874
No 188
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.86 E-value=6.8e-05 Score=63.34 Aligned_cols=61 Identities=18% Similarity=0.407 Sum_probs=55.0
Q ss_pred cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 026712 164 TNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAAL 224 (234)
Q Consensus 164 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~ 224 (234)
.....|.++|++ ++.+++.++++.++++.+.+++.+++||++++ ++++|+|+.+|++..+.
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 567889999987 68999999999999999999999999999865 78999999999997653
No 189
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.84 E-value=7.8e-05 Score=65.22 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=77.6
Q ss_pred CcCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCcc
Q 026712 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVN 148 (234)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (234)
.....+++++|.+ ...+...... .+++. .+.+.++|+|+ |+++..+...+..
T Consensus 270 ~~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 321 (382)
T TIGR03415 270 PLNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA---------------- 321 (382)
T ss_pred cccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence 3456678888965 2222222222 33333 67788889885 8888777654210
Q ss_pred chhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 149 STWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
......+.+ +..+..++.+++++.+++..+.+.+. .++|+|+ |+++|+|++.++++.+.+
T Consensus 322 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 322 --------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 012234555 45668889999999999999988775 6899995 999999999999998763
No 190
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.82 E-value=4.1e-05 Score=70.69 Aligned_cols=61 Identities=26% Similarity=0.419 Sum_probs=55.2
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 165 NGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 165 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
...+++++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+.+.+
T Consensus 445 ~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~ 505 (574)
T PRK01862 445 RTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD 505 (574)
T ss_pred hhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc
Confidence 3467999999999999999999999999999999999999988999999999999986543
No 191
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.82 E-value=9.3e-05 Score=52.15 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=45.1
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHh
Q 026712 176 APLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQI 226 (234)
Q Consensus 176 ~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~ 226 (234)
++.++..++++.++++.|.+.+.+.+||+++ |+++|+++..|+.+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~ 51 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEG 51 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcc
Confidence 4678999999999999999999999999996 9999999999999976543
No 192
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=6.5e-05 Score=56.29 Aligned_cols=55 Identities=31% Similarity=0.597 Sum_probs=49.7
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
..++.++|.. ++.++++++++.++++.|.+.+...+||+++ ++++|+++.+|++.
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4568889987 7899999999999999999999999999987 89999999999964
No 193
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.77 E-value=7.4e-05 Score=52.59 Aligned_cols=54 Identities=37% Similarity=0.509 Sum_probs=47.8
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
.++.++|.. ++.++++++++.++++.|.+.+...+||+++ |+++|+++.+|+.+
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 357788877 7889999999999999999999999999985 79999999999864
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.60 E-value=8.6e-05 Score=65.93 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=54.8
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
+..+++++|.+ +++++.+++..+++.+++++++.-.+||||++++++|+||..|++..+
T Consensus 194 ~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 194 PDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred cHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 36689999998 789999999999999999999999999999999999999999998763
No 195
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.26 E-value=0.00071 Score=58.88 Aligned_cols=55 Identities=27% Similarity=0.489 Sum_probs=49.5
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
.+.+.|.+ ...++.+++++.+++..|.+++.. +||+|++|+++|+|+..++++.+
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 46677776 778999999999999999999988 99999999999999999998864
No 196
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0048 Score=57.21 Aligned_cols=60 Identities=28% Similarity=0.364 Sum_probs=51.7
Q ss_pred CccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCC--CcEEEEEehHHHhhhhc
Q 026712 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLALDS 132 (234)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~--~~~~Givt~~dl~~~~~ 132 (234)
+.+.|+++|.+ ++..+..+.|.+|..+.+....+..+|+||.. ..++|.|.++.+...+.
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 47789999999 99999999999999999988778899999864 36899999998875543
No 197
>PRK11573 hypothetical protein; Provisional
Probab=97.19 E-value=0.0021 Score=56.93 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=54.8
Q ss_pred hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 026712 163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVDGY-GKLVGLITRGNVVRAAL 224 (234)
Q Consensus 163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~-~~~vGiit~~dll~~l~ 224 (234)
...+.++.++|++ ++..++.++++.++++.+.+++..++||.+++ ++++|++..+|++..+.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 4567899999974 67889999999999999999999999999754 78999999999997654
No 198
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.97 E-value=0.0037 Score=55.76 Aligned_cols=65 Identities=25% Similarity=0.496 Sum_probs=57.6
Q ss_pred hcCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHHHHhh
Q 026712 163 KTNGKVVGDLMTP--APLVVHENTNLEDAARLLLETKYRRLPVVD-GYGKLVGLITRGNVVRAALQIK 227 (234)
Q Consensus 163 ~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~-~~~~~vGiit~~dll~~l~~~~ 227 (234)
...+.+++++|++ ++..++.++++.++.+.+.+++++++||.+ +.+.++|++..+|++..+....
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc
Confidence 3567899999974 678899999999999999999999999999 5579999999999999988764
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0026 Score=56.11 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=48.7
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhc
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 132 (234)
.+.+.+.+ ...++.+++++.+++..+..+... +||+|++|+++|+|+..++++.+.
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 46666766 678999999999999999987766 999999999999999999998753
No 200
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.015 Score=53.13 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=51.8
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
.+....+|++ .++++++++++..+..+++.-+..++.|++..++.+|++|++|+.+.
T Consensus 689 yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 689 YVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred ccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 4457788998 88999999999999999999999999999988889999999999854
No 201
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.037 Score=47.70 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=49.2
Q ss_pred cccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
.+-.+++.-..++..+++++++.+-+..|.+.+.+...||||-|.+.|+||.+|++...
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI 323 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence 33445554333688999999999999999998888889999999999999999999763
No 202
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.039 Score=44.63 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=50.1
Q ss_pred ccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
...+.++.++ .+.+++...+.-.++-|+..+.+.+.|+|+-|-+-|+||.+|++..
T Consensus 132 ~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq 187 (293)
T COG4535 132 PFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ 187 (293)
T ss_pred cccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence 4567787776 7899999999999999999999999999999999999999999875
No 203
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.31 E-value=0.09 Score=47.74 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=90.5
Q ss_pred cCccccccccccCCCceeecCCCCHH-HHHHHHHhCCCCeeEEEcCCC-cEEEEEehHHHhhhhccCCCCCCCCCCCCCc
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVD-EALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSISGGNQNDTSLFPNV 147 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~-~a~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 147 (234)
.....++++|.+-+++..++.+..+. +......+.+++.+||.+.+. ..+|.+=...+.+.....
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~------------- 267 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE------------- 267 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc-------------
Confidence 34667899999987888888888777 444555688999999998653 233432222222221000
Q ss_pred cchhhhhHHHHHHHhhcCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 026712 148 NSTWKTFNELQRLLSKTNGKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAAL 224 (234)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~ 224 (234)
......++...+......++.++++.+.++.|.+...|...|.+ ..--+|+++..|+ +...
T Consensus 268 --------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 268 --------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred --------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 01344678888888899999999999999999988887777777 5668899999998 6655
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.13 E-value=0.12 Score=45.44 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.7
Q ss_pred ccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
++.+ +.. +..++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++..+
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence 4555 444 678899999999999998887754 788886 9999999999998764
No 205
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.44 E-value=0.26 Score=40.77 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 183 NTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 183 ~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
.....+++..+...+...+||+|++|+++|.|+..+++..
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 3344568888888999999999999999999999999864
No 206
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.37 E-value=0.37 Score=44.36 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=50.1
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
......+++|.. .+.++....+.+.+++++++-+...+.| +++|++.|+||.+|+++.
T Consensus 636 ~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 636 PSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRH 693 (696)
T ss_pred CCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehHHHHHh
Confidence 345567889887 7889999999999999999999988855 668999999999999875
No 207
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.28 Score=46.10 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=53.8
Q ss_pred cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHHhhh
Q 026712 168 VVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGY--GKLVGLITRGNVVRAALQIKR 228 (234)
Q Consensus 168 ~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~--~~~vGiit~~dll~~l~~~~~ 228 (234)
.|.++|.+++..+..+++..|+-+.+.....+.+|+|++. ..++|.|.++.+...+..+.-
T Consensus 589 ~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 589 KVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred EeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence 5899999999999999999999998887779999999853 469999999999999887543
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.32 E-value=0.49 Score=40.35 Aligned_cols=47 Identities=30% Similarity=0.440 Sum_probs=40.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhh
Q 026712 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (234)
Q Consensus 84 ~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 131 (234)
.+..+..++++.+.+....+... .++|+|++++++|+++...++.++
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence 57888999999999998888765 478999999999999999998764
No 209
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.23 E-value=0.48 Score=39.26 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=42.3
Q ss_pred CccccccccccCC--CceeecCCCCHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhh
Q 026712 71 GTYTVGDFMTKKE--DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (234)
Q Consensus 71 ~~~~v~~im~~~~--~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~ 129 (234)
...++.+.|.+.. +--.+.....-.+++..+...+...+||+|++|+++|.||..++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 3455666665410 1123344555566787888888899999999999999999999975
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=71.83 E-value=13 Score=34.99 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=65.6
Q ss_pred ccccccccCCCceeecCCCC-HHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhh
Q 026712 74 TVGDFMTKKEDLHAVKTTTT-VDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWK 152 (234)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~-v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
.+.+.+.+ +-..+....+ ++++.+.+...+ ..+++.|.+|.++.+....++.+....... . .+..|.
T Consensus 42 ~~~~~~~~--~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~-~--------~G~~w~ 109 (638)
T PRK11388 42 TFASIYRR--KKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGF-N--------DGTYCA 109 (638)
T ss_pred HHHHHHHH--hHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCC-c--------cCCccc
Confidence 34444444 2233333333 445555555555 578889999999999988887754321110 0 011111
Q ss_pred hhHHHHHHHhhcCCCc-c-cccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 026712 153 TFNELQRLLSKTNGKV-V-GDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLIT 215 (234)
Q Consensus 153 ~~~~~~~~~~~~~~~~-v-~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit 215 (234)
+ ..-.+. + .-+....++.|...+...+..+. -.+...||.|.+|+++|+|+
T Consensus 110 E---------~~~GTnaig~al~~~~pv~v~g~EH~~~~~~~---~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 110 E---------GIIGTNALSLAAISGQPVKTMGDQHFKQALHN---WAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred h---------hccCcCHHHHHHhcCCceEEecHHHHHHhccC---ceEEeeEEEcCCCCEEEEEE
Confidence 0 001111 1 11123557777766655555443 44567899998999999996
No 211
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=70.46 E-value=12 Score=26.37 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=38.6
Q ss_pred CcccccccCCCeEecCCCC---HHHHHHHHHHcCCCEEEEEcC-CCcE----EEEEehHHHHHHHHHhh
Q 026712 167 KVVGDLMTPAPLVVHENTN---LEDAARLLLETKYRRLPVVDG-YGKL----VGLITRGNVVRAALQIK 227 (234)
Q Consensus 167 ~~v~~im~~~~~~v~~~~~---l~~~~~~m~~~~~~~vpVv~~-~~~~----vGiit~~dll~~l~~~~ 227 (234)
..|.+.+....+.+..+.+ ..+..+.+...+...+.+++. +|++ .|.++..+++..+.+..
T Consensus 43 ~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 43 ESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred HHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 3455555555655554443 334444445556666778887 6754 58899999998887654
No 212
>smart00594 UAS UAS domain.
Probab=67.08 E-value=6.6 Score=28.35 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=34.6
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHH---cCCCEEEEEcCCC---------cEEEEEehHHHHHHH
Q 026712 166 GKVVGDLMTPAPLVVHENTNLEDAARLLLE---TKYRRLPVVDGYG---------KLVGLITRGNVVRAA 223 (234)
Q Consensus 166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~---~~~~~vpVv~~~~---------~~vGiit~~dll~~l 223 (234)
+..|.+++....+....+.+-.+..+++.. .+...+.+++.++ ++-|-++..+++..+
T Consensus 52 ~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 52 NEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 345666666666664444443444444444 4556677888665 456777777777664
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=64.19 E-value=21 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=11.1
Q ss_pred EEEEEcCCCcEEEEEehHHHHHHH
Q 026712 200 RLPVVDGYGKLVGLITRGNVVRAA 223 (234)
Q Consensus 200 ~vpVv~~~~~~vGiit~~dll~~l 223 (234)
.|-|++++|+.+|+++..+-++..
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A 37 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLA 37 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHH
T ss_pred EEEEECCCCcEeceEEHHHHHHHH
Confidence 444555555555555555554443
No 214
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=49.28 E-value=84 Score=27.98 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhcCCCcccc-cccCCCeEecCCC
Q 026712 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTNGKVVGD-LMTPAPLVVHENT 184 (234)
Q Consensus 106 ~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-im~~~~~~v~~~~ 184 (234)
+..++|.++ +.|++|-+||+ .+. ...+++ ++.+. -..-.|.
T Consensus 306 v~v~~v~n~---VagLlTg~Di~-~l~---------------------------------~~~~~d~~liP~-~~fldd~ 347 (404)
T TIGR03278 306 VNVVPVKKD---IACLITEDDLE-ELD---------------------------------LSEVKETVIIPG-RAFVHDM 347 (404)
T ss_pred EEEEEecCc---ccccchHHHHH-Hhc---------------------------------CCCCCCEEEecC-ccccccc
Confidence 455666543 99999999998 431 112222 22232 3344556
Q ss_pred CHHHHHHHHHHcCCCEEEEE-----cCCCcEEEEEehHHHHHHHHH
Q 026712 185 NLEDAARLLLETKYRRLPVV-----DGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 185 ~l~~~~~~m~~~~~~~vpVv-----~~~~~~vGiit~~dll~~l~~ 225 (234)
++.++.+.+ +...++|- ..+|+.-|..|+++++++=.+
T Consensus 348 t~~~~~~~l---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (404)
T TIGR03278 348 VAEEILKRD---GVDRIVVRGPDRLTADGEMSGGMTREEVLEFELE 390 (404)
T ss_pred cHHHHHHHh---CCcEEEecCCceeeecceecccccHHHHHHHHHH
Confidence 777776654 55444432 236899999999999876443
No 215
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=48.23 E-value=23 Score=32.52 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712 185 NLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227 (234)
Q Consensus 185 ~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~ 227 (234)
.++.+.+...+.|-..++|+. +|++.|+|..+|+++-=.+.+
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi~ER 455 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGIKER 455 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhHHHH
Confidence 577788888889999999998 799999999999987544433
No 216
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=46.84 E-value=23 Score=25.20 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEeh
Q 026712 200 RLPVVDGYGKLVGLITR 216 (234)
Q Consensus 200 ~vpVv~~~~~~vGiit~ 216 (234)
..||.|.+|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 57999889999999874
No 217
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=44.40 E-value=42 Score=22.18 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.3
Q ss_pred CCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 106 ITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 106 ~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
...+-|++++|..+|+++.++.++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4567888999999999999999875
No 218
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=44.23 E-value=25 Score=25.01 Aligned_cols=18 Identities=50% Similarity=0.558 Sum_probs=13.5
Q ss_pred CeeEEEcCCCcEEEEEeh
Q 026712 107 TGFPVIDDDWKLVGVVSD 124 (234)
Q Consensus 107 ~~~pVvd~~~~~~Givt~ 124 (234)
-..||.|.+|+++|+|..
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 358999889999999975
No 219
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=34.97 E-value=42 Score=25.99 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 105 RITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 105 ~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
+...+-+++++|.-+|+++..+-+..
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~l 42 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKL 42 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHH
Confidence 45667788999999999999998875
No 220
>PF14044 NETI: NETI protein
Probab=34.81 E-value=57 Score=20.29 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.1
Q ss_pred eecCCCCHHHHHHHHHhCCCCeeEEE
Q 026712 87 AVKTTTTVDEALERLVEKRITGFPVI 112 (234)
Q Consensus 87 ~v~~~~~v~~a~~~~~~~~~~~~pVv 112 (234)
.+.++.|+.++++.|.+.++ .||-
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 46789999999999999886 5664
No 221
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.90 E-value=72 Score=29.50 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhCCCCeeEEEcCCCcEEEEEehHHHhhh
Q 026712 93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 93 ~v~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
.++.+.+...+.+-..++|++ ++++.|+|..+|+.+-
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 466677777777777787876 6899999999999763
No 222
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=30.91 E-value=80 Score=19.67 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.2
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 026712 181 HENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNV 219 (234)
Q Consensus 181 ~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dl 219 (234)
....+..+.++...+.|++.+.++| .+.+-|.....+.
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~ 49 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKA 49 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHH
Confidence 4556789999999999999999998 6667776544433
No 223
>PHA00673 acetyltransferase domain containing protein
Probab=30.77 E-value=1.1e+02 Score=23.19 Aligned_cols=33 Identities=15% Similarity=-0.065 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 026712 184 TNLEDAARLLLETKYRRLPVVDGYGKLVGLITR 216 (234)
Q Consensus 184 ~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~ 216 (234)
.+-.++++.+.+.+-..+.|..++|++||.+..
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l 72 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACL 72 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEE
Confidence 566777899988998899888778999997543
No 224
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=30.50 E-value=50 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=16.1
Q ss_pred EEEEEcCCCcEEEEEe----hHHHHHHH
Q 026712 200 RLPVVDGYGKLVGLIT----RGNVVRAA 223 (234)
Q Consensus 200 ~vpVv~~~~~~vGiit----~~dll~~l 223 (234)
..||.+++|+++|++. ...+.+.+
T Consensus 18 s~pi~~~~g~~~Gvv~~di~l~~l~~~i 45 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGIDISLDQLSEII 45 (81)
T ss_dssp EEEEEETTTEEEEEEEEEEEHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEEEeccceeeeEE
Confidence 3588887899999854 44444443
No 225
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=29.44 E-value=1e+02 Score=27.28 Aligned_cols=114 Identities=14% Similarity=0.253 Sum_probs=66.0
Q ss_pred eecCCCCHHHHHHHHHh-CCCCeeEEEcCCCcEEEEEehHHHhhhhccCCCCCCCCCCCCCccchhhhhHHHHHHHhhcC
Q 026712 87 AVKTTTTVDEALERLVE-KRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQNDTSLFPNVNSTWKTFNELQRLLSKTN 165 (234)
Q Consensus 87 ~v~~~~~v~~a~~~~~~-~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (234)
+..-+.+.++..+.++. +.-+.-.|+.+.+|+.|++-...-+... + -.|+.+.. ..++ .
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~---~-------------lK~~~~n~-e~l~---~ 302 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDG---Y-------------LKWPEFNQ-EPLL---E 302 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccce---e-------------ecchhhcc-chhH---h
Confidence 34456677777777765 4333344555568999999765443211 1 11221110 1111 1
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHHhh
Q 026712 166 GKVVGDLMTPAPLVVHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRAALQIK 227 (234)
Q Consensus 166 ~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~l~~~~ 227 (234)
.-.+..+.++|.+++.|+.+..+. ..-+...|+..+| +.-.+|-.++...+.+..
T Consensus 303 ~fr~~~~~t~PyltaeP~i~~HrL------~p~DkFLIlASDG-LwE~lsNeeaV~lV~~~i 357 (390)
T KOG0700|consen 303 KFRIPYIGTPPYLTAEPSITHHKL------TPNDKFLILASDG-LWEYLSNEEAVSLVHEFI 357 (390)
T ss_pred hcCCCCCCCCCceeccceEEEEEc------CCCCeEEEEeccc-hhhhcChHHHHHHHHHhh
Confidence 344566667777777777765554 3446777887666 666677777777766643
No 226
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=28.09 E-value=48 Score=22.84 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.1
Q ss_pred hCCCCeeEEEcCCCcEEEE
Q 026712 103 EKRITGFPVIDDDWKLVGV 121 (234)
Q Consensus 103 ~~~~~~~pVvd~~~~~~Gi 121 (234)
..+.+.-||+|.+|+++|+
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3467788999999999997
No 227
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=26.24 E-value=1.2e+02 Score=20.60 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEehH
Q 026712 189 AARLLLETKYRRLPVVDGYGKLVGLITRG 217 (234)
Q Consensus 189 ~~~~m~~~~~~~vpVv~~~~~~vGiit~~ 217 (234)
.++.+.+.+...+.|...+|+++|++...
T Consensus 34 ~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 34 DLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 33444445545666776689999998743
No 228
>CHL00199 infC translation initiation factor 3; Provisional
Probab=26.15 E-value=58 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=14.0
Q ss_pred CeeEEEcCCCcEEEEEehHHHhhh
Q 026712 107 TGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 107 ~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
..+-|+|++|..+|+++..+.++.
T Consensus 25 ~~VrlI~~~G~~lGv~~~~eAl~~ 48 (182)
T CHL00199 25 PKVRVIDDSGEQLGIFTSEQAIQL 48 (182)
T ss_pred CEEEEECCCCcCCCceeHHHHHHH
Confidence 345555666666666666665543
No 229
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=25.80 E-value=57 Score=25.42 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=8.5
Q ss_pred HHHHHHHcCCCEEEEEc
Q 026712 189 AARLLLETKYRRLPVVD 205 (234)
Q Consensus 189 ~~~~m~~~~~~~vpVv~ 205 (234)
-+..|.+.|..-=.++-
T Consensus 111 ~~~kFL~kG~kVkv~l~ 127 (177)
T PRK00028 111 HARRFLEKGDKVKVTLR 127 (177)
T ss_pred HHHHHHHCCCEEEEEEE
Confidence 34556666654333443
No 230
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=24.82 E-value=57 Score=25.13 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=13.9
Q ss_pred CeeEEEcCCCcEEEEEehHHHhhh
Q 026712 107 TGFPVIDDDWKLVGVVSDYDLLAL 130 (234)
Q Consensus 107 ~~~pVvd~~~~~~Givt~~dl~~~ 130 (234)
..+-|+|++|...|+++..+.++.
T Consensus 8 ~~Vrli~~dG~~lgv~~~~eAl~~ 31 (165)
T TIGR00168 8 NEVRLIDENGEQLGIVSREEALEI 31 (165)
T ss_pred CEEEEECCCCcCCCcccHHHHHHH
Confidence 345555666666666666665554
No 231
>CHL00199 infC translation initiation factor 3; Provisional
Probab=24.37 E-value=90 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=16.9
Q ss_pred CEEEEEcCCCcEEEEEehHHHHHHHHH
Q 026712 199 RRLPVVDGYGKLVGLITRGNVVRAALQ 225 (234)
Q Consensus 199 ~~vpVv~~~~~~vGiit~~dll~~l~~ 225 (234)
..|-|++++|+.+|+++..+-++...+
T Consensus 25 ~~VrlI~~~G~~lGv~~~~eAl~~A~~ 51 (182)
T CHL00199 25 PKVRVIDDSGEQLGIFTSEQAIQLAAN 51 (182)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHH
Confidence 456666666667777776666655443
No 232
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.94 E-value=81 Score=23.50 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=15.0
Q ss_pred cCCCEEEEEcCCCcEEEEE
Q 026712 196 TKYRRLPVVDGYGKLVGLI 214 (234)
Q Consensus 196 ~~~~~vpVv~~~~~~vGii 214 (234)
.|-+.=|+.|+.|+++|||
T Consensus 105 ~GDSGRpi~DNsGrVVaIV 123 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIV 123 (158)
T ss_dssp TTSTTEEEESTTSBEEEEE
T ss_pred CCCCCCccCcCCCCEEEEE
Confidence 3444569999999999997
No 233
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=22.21 E-value=77 Score=21.74 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCEEEEEcCCCc----EEEEEehHHHHHHH
Q 026712 188 DAARLLLETKYRRLPVVDGYGK----LVGLITRGNVVRAA 223 (234)
Q Consensus 188 ~~~~~m~~~~~~~vpVv~~~~~----~vGiit~~dll~~l 223 (234)
+..+.+.-.+...+.+.|.+|+ +.|.++..++.+.|
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 4555555566667777886665 56778888887754
No 234
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=21.76 E-value=1.6e+02 Score=23.01 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=36.6
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 026712 180 VHENTNLEDAARLLLETKYRRLPVVDGYGKLVGLITRGNVVRA 222 (234)
Q Consensus 180 v~~~~~l~~~~~~m~~~~~~~vpVv~~~~~~vGiit~~dll~~ 222 (234)
......+.+|+..+.+.++.-|+|.|.+|--.|..+..++...
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~ 72 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKL 72 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHH
Confidence 4445578899999999999999999988988899999988766
No 235
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=21.67 E-value=1.8e+02 Score=20.68 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=40.2
Q ss_pred CcccccccCCCeEecCCCCHH---HHHHHHHHcCCCEEEEE---cCCC----cEEEEEehHHHHHHHHHhhh
Q 026712 167 KVVGDLMTPAPLVVHENTNLE---DAARLLLETKYRRLPVV---DGYG----KLVGLITRGNVVRAALQIKR 228 (234)
Q Consensus 167 ~~v~~im~~~~~~v~~~~~l~---~~~~~m~~~~~~~vpVv---~~~~----~~vGiit~~dll~~l~~~~~ 228 (234)
..+.++++.+.+....+..-. ++...+.-..+..+.++ +++. ++.|.++..+++..+....+
T Consensus 43 ~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 43 PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 345556666666655554433 45555555667777777 4332 47899999999999877654
No 236
>PRK02135 hypothetical protein; Provisional
Probab=21.51 E-value=94 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=17.2
Q ss_pred ccchhhhhhcccCceecCC
Q 026712 6 IPSCLTLARLNANGVINSV 24 (234)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~~ 24 (234)
+|.|+.-|.+.+.|+..+.
T Consensus 32 lcR~v~sAlflSh~iR~Dv 50 (201)
T PRK02135 32 LCRCVNSAFFLSHDIRRDV 50 (201)
T ss_pred HHHHHHHHHHHhcCccCCe
Confidence 6899999999999998886
No 237
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=20.53 E-value=1e+02 Score=20.94 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=12.1
Q ss_pred CCeeEEEcCCCcEEEEE
Q 026712 106 ITGFPVIDDDWKLVGVV 122 (234)
Q Consensus 106 ~~~~pVvd~~~~~~Giv 122 (234)
....|+.+++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 45678888889999987
No 238
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=20.52 E-value=1.4e+02 Score=21.38 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=36.3
Q ss_pred cCccccccccccCCCceeecCCCCHHHHHHHHHhCCCCeeEEEc-CCCcEEEEEehHHHh
Q 026712 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLL 128 (234)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~ 128 (234)
...+++++++.. + -.....-.++...+....++.+ |+| .+++++++|...+-.
T Consensus 27 ~~qV~l~~~l~~--~---~~~~~~~~~~~~~~~~~~vDFv-v~d~~~~~p~~vIEld~~~ 80 (126)
T PF10881_consen 27 FPQVRLSDLLRP--E---GPSRRERKEAFNRINQKHVDFV-VCDKRDGRPVAVIELDGSS 80 (126)
T ss_pred EeCccHHHhhCc--c---CCCchhHHHHHHHhcCCCccEE-EEECCCCcEEEEEEecCcc
Confidence 346678888875 3 2233444566667667777765 777 788999999887663
No 239
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=20.49 E-value=81 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=15.6
Q ss_pred CCEEEEEcCCCcEEEEEehH
Q 026712 198 YRRLPVVDGYGKLVGLITRG 217 (234)
Q Consensus 198 ~~~vpVv~~~~~~vGiit~~ 217 (234)
...+||.+ +|+++|++++.
T Consensus 106 ~~~~PI~~-~~~vIaVl~~~ 124 (145)
T PF12282_consen 106 QEVVPIRR-NGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEEEE
Confidence 35789999 57999999954
Done!