BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026716
         (234 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 43.9 bits (102), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 16/93 (17%)

Query: 112 ARPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVG---- 166
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G    
Sbjct: 71  GRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIV 127

Query: 167 --------ERPRVVCILSGRGTVSSVTLRQPAT 191
                    R R V +L G GTVS+VTLRQP T
Sbjct: 128 ESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVT 160


>sp|Q9LME6|MBD8_ARATH Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis
           thaliana GN=MBD8 PE=2 SV=1
          Length = 524

 Score = 33.9 bits (76), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 22/118 (18%)

Query: 85  DPVKKKRGRPRK-------------------YAPDGQVSLGLSPLPARPKRSPASDSQAL 125
           + +K+KRGRPRK                   Y    + S  L  +        + DS ++
Sbjct: 178 NKIKRKRGRPRKIRNPSEENEVLDLTGEASTYVFVDKTSSNLGMVSRVGSSGISLDSNSV 237

Query: 126 KRSRGRPPGTGRKQQLATLGEWMNSSAGI-AFAPHVISIGVGERPRVVCILSGRGTVS 182
           KR RGRPP    K+++  L +  ++   I AF    + + +  R   +  LS   +VS
Sbjct: 238 KRKRGRPPKN--KEEIMNLEKRDSAIVNISAFDKEELVVNLENREGTIVDLSALASVS 293


>sp|P48786|PRH_PETCR Pathogenesis-related homeodomain protein OS=Petroselinum crispum
           GN=PRH PE=2 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 67  KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQ--- 123
           K +  G      S   L D  K+ RGRPRK      V  GL  L    + +  S SQ   
Sbjct: 350 KELVIGQETVAKSPSQLVDAGKRGRGRPRK------VQTGLEQLVPVQETAAKSSSQLGD 403

Query: 124 ALKRSRGRP 132
             KRSRGRP
Sbjct: 404 TGKRSRGRP 412


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=orc4 PE=1 SV=1
          Length = 972

 Score = 32.3 bits (72), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 88  KKKRGRPRKYAPDGQVSL--GLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLAT 143
           K+ RGRPRK  P+   S   GLSPL   P           KR RGRPP    +Q++A 
Sbjct: 201 KRGRGRPRKIKPEEGSSSQNGLSPLVVLPA----------KRGRGRPPLHRSEQKIAN 248


>sp|B4NXA8|AFF4_DROYA AF4/FMR2 family member 4 OS=Drosophila yakuba GN=lilli PE=3 SV=1
          Length = 1671

 Score = 31.2 bits (69), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 66  PKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDG 101
           PKH    H+       P +D VKK RGRPRK    G
Sbjct: 827 PKHPGLDHSAVSVQAQPATDTVKKGRGRPRKQQQSG 862


>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
           OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
          Length = 215

 Score = 31.2 bits (69), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 34  QSGLMQTPPGFRSSSNLNIPTQ-PNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKK--- 89
           Q+G+     G   S+N  +PT  P V  TF      VN  H+  VP  + LSD  KK   
Sbjct: 106 QTGIFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELL 165

Query: 90  KRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKR 127
           KR R           L  S LP   +  P +    LKR
Sbjct: 166 KRYR-----------LKESQLPRIQRMDPVALYLGLKR 192


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,193,971
Number of Sequences: 539616
Number of extensions: 4356284
Number of successful extensions: 11027
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 10948
Number of HSP's gapped (non-prelim): 145
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)