Query 026717
Match_columns 234
No_of_seqs 120 out of 520
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00101 14_3_3 14-3-3 homol 100.0 8.1E-82 1.7E-86 553.1 24.2 217 6-223 1-236 (244)
2 COG5040 BMH1 14-3-3 family pro 100.0 6E-82 1.3E-86 530.3 14.1 216 4-222 3-237 (268)
3 PF00244 14-3-3: 14-3-3 protei 100.0 3.1E-78 6.6E-83 529.3 22.1 215 6-223 1-234 (236)
4 KOG0841 Multifunctional chaper 100.0 2.3E-72 4.9E-77 484.2 18.5 220 5-227 1-240 (247)
5 PF13424 TPR_12: Tetratricopep 96.6 0.0051 1.1E-07 43.6 5.4 56 150-207 21-76 (78)
6 KOG1840 Kinesin light chain [C 96.1 0.54 1.2E-05 46.0 17.4 186 7-207 200-397 (508)
7 PF12862 Apc5: Anaphase-promot 94.8 0.24 5.3E-06 37.0 8.2 75 133-213 2-77 (94)
8 TIGR00990 3a0801s09 mitochondr 93.2 5.8 0.00012 39.1 16.6 54 150-205 483-536 (615)
9 PF04781 DUF627: Protein of un 88.1 2.4 5.3E-05 33.3 6.8 87 106-204 16-105 (111)
10 KOG1840 Kinesin light chain [C 87.9 29 0.00063 34.1 17.5 179 8-204 285-477 (508)
11 PF13414 TPR_11: TPR repeat; P 86.4 3.8 8.2E-05 27.7 6.4 47 150-205 19-66 (69)
12 KOG4162 Predicted calmodulin-b 84.4 51 0.0011 34.0 15.4 166 18-206 335-507 (799)
13 PF13374 TPR_10: Tetratricopep 79.8 1.9 4.1E-05 26.0 2.4 24 150-173 18-41 (42)
14 PF13424 TPR_12: Tetratricopep 79.1 5 0.00011 27.9 4.8 39 172-211 1-39 (78)
15 TIGR02917 PEP_TPR_lipo putativ 71.1 1.1E+02 0.0023 30.0 17.3 27 8-34 705-731 (899)
16 PF13431 TPR_17: Tetratricopep 70.4 4.7 0.0001 24.4 2.4 34 156-198 1-34 (34)
17 PF13174 TPR_6: Tetratricopept 67.2 11 0.00024 21.3 3.5 27 8-34 2-28 (33)
18 PRK14720 transcript cleavage f 66.5 29 0.00063 36.5 8.5 89 107-207 88-179 (906)
19 PRK09782 bacteriophage N4 rece 65.7 1.9E+02 0.0042 30.8 16.1 26 9-34 512-537 (987)
20 PF13181 TPR_8: Tetratricopept 63.5 18 0.00038 20.8 4.0 27 8-34 3-29 (34)
21 PF14559 TPR_19: Tetratricopep 63.3 28 0.0006 23.1 5.5 47 151-206 8-54 (68)
22 PF07719 TPR_2: Tetratricopept 61.5 19 0.00042 20.5 3.9 26 9-34 4-29 (34)
23 TIGR02521 type_IV_pilW type IV 60.6 83 0.0018 24.9 18.2 166 7-206 32-198 (234)
24 PF01765 RRF: Ribosome recycli 58.7 43 0.00093 27.6 6.8 73 40-113 85-157 (165)
25 PF13371 TPR_9: Tetratricopept 58.4 25 0.00054 23.7 4.6 47 151-206 12-58 (73)
26 PF13176 TPR_7: Tetratricopept 58.3 21 0.00045 21.5 3.7 26 9-34 2-27 (36)
27 PF12569 NARP1: NMDA receptor- 57.9 2E+02 0.0043 28.4 18.1 62 144-206 156-223 (517)
28 KOG4759 Ribosome recycling fac 57.9 45 0.00098 30.0 7.1 71 40-113 183-253 (263)
29 CHL00033 ycf3 photosystem I as 55.8 48 0.001 26.5 6.6 70 121-206 32-101 (168)
30 PF13428 TPR_14: Tetratricopep 53.6 34 0.00073 21.3 4.3 27 8-34 3-29 (44)
31 COG0233 Frr Ribosome recycling 53.1 57 0.0012 28.0 6.7 73 40-113 105-177 (187)
32 TIGR02917 PEP_TPR_lipo putativ 52.2 2.4E+02 0.0052 27.6 17.3 62 7-73 23-84 (899)
33 PF05010 TACC: Transforming ac 50.0 99 0.0021 26.9 7.8 84 11-110 123-206 (207)
34 PF12895 Apc3: Anaphase-promot 49.7 32 0.0007 24.2 4.1 45 156-203 40-84 (84)
35 TIGR02795 tol_pal_ybgF tol-pal 49.6 58 0.0013 23.4 5.7 50 151-206 56-105 (119)
36 cd00520 RRF Ribosome recycling 49.1 55 0.0012 27.5 6.0 73 40-113 99-171 (179)
37 TIGR00496 frr ribosome recycli 48.1 67 0.0014 27.1 6.3 73 40-113 94-166 (176)
38 PRK02603 photosystem I assembl 47.1 85 0.0018 25.3 6.8 51 150-206 51-101 (172)
39 PRK11447 cellulose synthase su 47.0 4E+02 0.0086 28.7 18.2 27 8-34 114-140 (1157)
40 PRK00083 frr ribosome recyclin 46.8 71 0.0015 27.1 6.4 73 40-113 103-175 (185)
41 cd05804 StaR_like StaR_like; a 44.8 2.2E+02 0.0048 25.1 13.2 30 174-204 184-213 (355)
42 PF12688 TPR_5: Tetratrico pep 44.6 1.2E+02 0.0026 23.7 7.0 51 150-206 17-67 (120)
43 KOG1126 DNA-binding cell divis 44.6 37 0.00081 34.2 4.8 70 128-206 483-552 (638)
44 PF12895 Apc3: Anaphase-promot 44.3 27 0.00058 24.6 3.0 45 151-202 6-50 (84)
45 PF04184 ST7: ST7 protein; In 44.1 66 0.0014 31.8 6.3 87 131-223 202-310 (539)
46 PRK10049 pgaA outer membrane p 44.0 3.7E+02 0.008 27.4 16.0 25 10-34 87-111 (765)
47 PF00515 TPR_1: Tetratricopept 43.1 57 0.0012 18.6 3.9 26 9-34 4-29 (34)
48 PF13432 TPR_16: Tetratricopep 42.1 83 0.0018 20.6 5.1 47 151-206 14-60 (65)
49 TIGR00990 3a0801s09 mitochondr 42.1 3.5E+02 0.0075 26.6 18.8 51 150-209 524-574 (615)
50 TIGR03190 benz_CoA_bzdN benzoy 40.3 3E+02 0.0064 25.7 10.0 108 114-233 123-238 (377)
51 PF10083 DUF2321: Uncharacteri 36.6 2.5E+02 0.0053 23.5 7.7 33 24-59 83-115 (158)
52 PLN03088 SGT1, suppressor of 36.6 1.1E+02 0.0023 28.3 6.4 48 155-206 50-99 (356)
53 PF08424 NRDE-2: NRDE-2, neces 36.2 1.2E+02 0.0027 27.5 6.7 56 150-206 118-183 (321)
54 CHL00033 ycf3 photosystem I as 35.7 1.3E+02 0.0029 23.9 6.2 49 150-206 88-142 (168)
55 PF10415 FumaraseC_C: Fumarase 35.7 34 0.00073 23.3 2.2 21 194-214 12-32 (55)
56 smart00101 14_3_3 14-3-3 homol 34.8 1.1E+02 0.0024 27.1 5.9 68 153-229 92-172 (244)
57 COG3063 PilF Tfp pilus assembl 33.9 59 0.0013 29.0 4.0 48 150-206 85-132 (250)
58 TIGR02552 LcrH_SycD type III s 33.1 1.6E+02 0.0034 22.0 5.9 47 151-206 68-114 (135)
59 PF09976 TPR_21: Tetratricopep 33.1 2.3E+02 0.0051 22.0 10.0 30 122-161 116-145 (145)
60 PRK10370 formate-dependent nit 33.0 2.7E+02 0.0059 23.3 7.9 17 190-206 157-173 (198)
61 smart00028 TPR Tetratricopepti 32.2 75 0.0016 16.0 3.5 26 9-34 4-29 (34)
62 PRK15359 type III secretion sy 31.9 1.8E+02 0.004 22.8 6.3 48 150-206 74-121 (144)
63 PF13432 TPR_16: Tetratricopep 31.0 1.5E+02 0.0033 19.3 6.8 53 11-68 2-54 (65)
64 PRK15179 Vi polysaccharide bio 30.8 6E+02 0.013 26.0 12.5 49 150-207 170-218 (694)
65 PRK10049 pgaA outer membrane p 30.4 6E+02 0.013 25.9 16.3 26 9-34 52-77 (765)
66 TIGR03504 FimV_Cterm FimV C-te 29.8 1E+02 0.0022 20.0 3.6 40 10-51 3-42 (44)
67 cd02683 MIT_1 MIT: domain cont 28.7 1.3E+02 0.0029 21.6 4.5 28 7-34 7-34 (77)
68 PF09986 DUF2225: Uncharacteri 28.3 3.4E+02 0.0073 23.3 7.7 71 130-206 124-194 (214)
69 PRK11447 cellulose synthase su 28.2 7.8E+02 0.017 26.5 17.0 56 11-71 356-411 (1157)
70 PRK15326 type III secretion sy 27.1 1.8E+02 0.0039 21.5 4.9 46 150-198 20-69 (80)
71 PF00244 14-3-3: 14-3-3 protei 26.9 2.3E+02 0.0049 24.7 6.5 58 94-164 141-203 (236)
72 KOG0530 Protein farnesyltransf 26.9 4.3E+02 0.0093 24.3 8.2 77 133-219 223-310 (318)
73 PF08631 SPO22: Meiosis protei 26.0 2.1E+02 0.0045 25.2 6.2 57 150-207 9-66 (278)
74 PF14490 HHH_4: Helix-hairpin- 25.9 1.1E+02 0.0025 22.5 3.9 48 127-186 38-86 (94)
75 PRK15363 pathogenicity island 24.0 3.5E+02 0.0076 22.4 6.7 51 145-204 80-130 (157)
76 PF10516 SHNi-TPR: SHNi-TPR; 23.9 1.1E+02 0.0024 19.2 2.9 37 132-171 2-38 (38)
77 PF00901 Orbi_VP5: Orbivirus o 23.6 5E+02 0.011 25.7 8.5 71 21-95 120-193 (508)
78 KOG2002 TPR-containing nuclear 23.4 1.6E+02 0.0035 31.3 5.5 49 155-207 250-300 (1018)
79 KOG0553 TPR repeat-containing 23.2 2.2E+02 0.0048 26.2 5.8 28 26-57 11-38 (304)
80 cd02656 MIT MIT: domain contai 23.2 2.7E+02 0.0058 19.4 6.2 27 8-34 8-34 (75)
81 cd02682 MIT_AAA_Arch MIT: doma 23.0 1.5E+02 0.0032 21.6 3.8 27 8-34 8-34 (75)
82 PF08717 nsp8: nsp8 replicase; 22.9 93 0.002 26.8 3.1 37 150-206 15-51 (199)
83 PF12603 DUF3770: Protein of u 22.7 3E+02 0.0066 24.7 6.5 95 4-117 3-106 (250)
84 cd02678 MIT_VPS4 MIT: domain c 22.3 1.6E+02 0.0034 20.8 3.9 28 7-34 7-34 (75)
85 cd07589 BAR_DNMBP The Bin/Amph 22.2 4.8E+02 0.01 21.9 11.1 52 128-179 113-164 (195)
86 smart00745 MIT Microtubule Int 22.1 1.6E+02 0.0034 20.5 3.9 27 8-34 10-36 (77)
87 PRK11788 tetratricopeptide rep 21.7 5.7E+02 0.012 22.7 18.5 26 180-206 286-311 (389)
88 PF14689 SPOB_a: Sensor_kinase 21.7 1.8E+02 0.0039 19.9 4.0 24 11-34 28-51 (62)
89 cd05493 Bromo_ALL-1 Bromodomai 21.6 1.1E+02 0.0023 24.8 3.1 40 95-134 74-120 (131)
90 PF09324 DUF1981: Domain of un 20.3 3.5E+02 0.0076 19.7 6.1 35 41-75 29-67 (86)
91 PRK10803 tol-pal system protei 20.3 3E+02 0.0064 24.5 6.0 51 155-206 194-246 (263)
92 PF04212 MIT: MIT (microtubule 20.2 2.1E+02 0.0045 19.6 4.1 27 8-34 7-33 (69)
No 1
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=8.1e-82 Score=553.08 Aligned_cols=217 Identities=69% Similarity=1.057 Sum_probs=207.4
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHH
Q 026717 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (234)
Q Consensus 6 re~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 85 (234)
|++++|+||+++||||||||+.+||++++. .++.+||.||||||||||||+||++|+|||+|++++++++.+|++.+++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~-~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~ 79 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKT-VDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVA 79 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhh-cCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHH
Confidence 689999999999999999999999999982 1225999999999999999999999999999999999988788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 026717 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (234)
Q Consensus 86 ~i~~yr~ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (234)
.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+
T Consensus 80 ~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~ 159 (244)
T smart00101 80 SIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIAL 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh-------------------hhhhcchhhhccccCC
Q 026717 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT-------------------RPLRRPLLSWTLWVKN 223 (234)
Q Consensus 166 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a-------------------~~l~dni~~W~~~~~~ 223 (234)
++||||||+||||+||||||||||++++++||++|++|||+| |+|||||+.|+.+.++
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~ 236 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQD 236 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 899999999999999999999999999999999999999997 9999999999998443
No 2
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=6e-82 Score=530.25 Aligned_cols=216 Identities=63% Similarity=0.998 Sum_probs=209.7
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhh
Q 026717 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEH 83 (234)
Q Consensus 4 ~~re~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~ 83 (234)
..|++.+|+|||++|||||+||++-||.++. . +.+|+.+|||||||||||+||.||+|||++++++||++++|++.+
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas--~-~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~q 79 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVAS--S-GQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQ 79 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhH
Confidence 3599999999999999999999999999996 3 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 026717 84 VSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (234)
Q Consensus 84 ~~~i~~yr~ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (234)
+.+|++||++|++||..||+||+++|++||||.+++.|++|||+|||||||||+|||..|+.++++.+.+.++|+.|.++
T Consensus 80 v~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Asei 159 (268)
T COG5040 80 VELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEI 159 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh-------------------hhhhcchhhhccccC
Q 026717 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT-------------------RPLRRPLLSWTLWVK 222 (234)
Q Consensus 164 a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a-------------------~~l~dni~~W~~~~~ 222 (234)
|...||||||||||||||||||||||+++|++||.+||+|||+| |+|||||+.|+-...
T Consensus 160 A~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 160 ATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred hhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 99999999999999999999999999999999999999999997 999999999996543
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=3.1e-78 Score=529.28 Aligned_cols=215 Identities=62% Similarity=0.969 Sum_probs=203.1
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHH
Q 026717 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (234)
Q Consensus 6 re~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 85 (234)
|++++|+||+++|+|||+||+++||++++ . +++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--M-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--T-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--c-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999998 4 59999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 026717 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (234)
Q Consensus 86 ~i~~yr~ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (234)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..|++++++.++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh-------------------hhhhcchhhhccccCC
Q 026717 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT-------------------RPLRRPLLSWTLWVKN 223 (234)
Q Consensus 166 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a-------------------~~l~dni~~W~~~~~~ 223 (234)
++||||||+||||+||||||||||+|++++||+||++|||+| |+|||||+.|+.+..+
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~ 234 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEE 234 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT---
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhccccccc
Confidence 899999999999999999999999999999999999999997 9999999999998764
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-72 Score=484.22 Aligned_cols=220 Identities=65% Similarity=0.986 Sum_probs=211.8
Q ss_pred cHHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhH
Q 026717 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (234)
Q Consensus 5 ~re~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 84 (234)
+|+++|++|++++|||||+||+.+||.+++ . +.+||.||||||||+|||+||++|+|||+|++||||++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~-~--~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE-L--DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc-c--chhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 3 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-chhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 026717 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (234)
Q Consensus 85 ~~i~~yr~ki~~EL~~~C~eil~lId~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (234)
..+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||+|||.+|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh-------------------hhhhcchhhhccccCCC
Q 026717 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT-------------------RPLRRPLLSWTLWVKNP 224 (234)
Q Consensus 164 a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a-------------------~~l~dni~~W~~~~~~~ 224 (234)
|+..|+|||||||||+||||||||||++.|++||.|||+|||+| |+||||++.|+-+.++-
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999996 99999999999887765
Q ss_pred ceE
Q 026717 225 TRI 227 (234)
Q Consensus 225 ~~~ 227 (234)
-..
T Consensus 238 ~~~ 240 (247)
T KOG0841|consen 238 EKE 240 (247)
T ss_pred ccc
Confidence 433
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0051 Score=43.58 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (234)
-+.|.+.|++|+++ .+.+++.||...-...|.+..++. +|+.++|.+..++|++-.
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 46789999999999 567899998888888889988887 899999999999998754
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.06 E-value=0.54 Score=46.00 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=124.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhc--cCCC-CCCCHH-HHHHHHHHHHhhhhhhhhHHHHHH-hhhhhhhcccc-
Q 026717 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS--STPA-TELTVE-ERNLLSVAYKNVIGSLRAAWRIIS-SIEQKEEGRKN- 80 (234)
Q Consensus 7 e~li~~Aklaeq~eRy~Dm~~~mk~~~~~--~~~~-~~Ls~e-ERnLlsvayKn~i~~~R~s~R~l~-~ieqk~~~~~~- 80 (234)
..+.++|.+..+.|+|+.++...++.+++ ++.| ..+-.. ..+-|++.|-+ .+..+.|..++. ++...++..|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567899999999999999999998863 1111 122222 33446666655 345566666664 23334444443
Q ss_pred -hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHH
Q 026717 81 -EEHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (234)
Q Consensus 81 -~~~~~~i~~-----yr~ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 154 (234)
+.....+.+ ++.-=-.|-...|+.+++|..+.+ .++.++-.-- +.++..-..-..-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQ-----------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHH-----------HHHHHHHHHHhcchhHHH
Confidence 333333332 444445788899999999998843 3333332221 222222222222367789
Q ss_pred HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 026717 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (234)
Q Consensus 155 ~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (234)
..|+.|+++....+.+.||.-=|.--|+++.|+- +|..++|-++.++|+...
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Confidence 9999999999988999999999999999999986 899999999999999886
No 7
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.82 E-value=0.24 Score=36.98 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=55.3
Q ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhhhhhhh
Q 026717 133 YYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKACTMAKQEKTLTRPLR 211 (234)
Q Consensus 133 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yEi~~~~~~A~~iAk~Afd~a~~l~ 211 (234)
|.+|+--+..++ -..|.+.....++.+..+..+.++..+..+ ||.+.+++. +|++++|....++|++-++...
T Consensus 2 ~l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 2 YLRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 345665555554 345778888888888877777755555555 788888887 7999999999999999886665
Q ss_pred cc
Q 026717 212 RP 213 (234)
Q Consensus 212 dn 213 (234)
|.
T Consensus 76 D~ 77 (94)
T PF12862_consen 76 DR 77 (94)
T ss_pred CH
Confidence 54
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.23 E-value=5.8 Score=39.06 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKT 205 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd 205 (234)
.+.|...|++|+++.. ...+.++..++ .++.+..+|+-.|+.++|.++.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3556777777776543 22333332222 244444555556777777777766654
No 9
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.08 E-value=2.4 Score=33.30 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred HHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccc-hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH--
Q 026717 106 LKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGD-ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNF-- 182 (234)
Q Consensus 106 l~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~-~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~-- 182 (234)
+++|.+.+.... +.++-.|.+...|+.+..+|....+. -+....-.|.++|.+|..+ +|..+.-|=..-+-
T Consensus 16 L~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----sp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 16 LEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----SPDSAHSLFELASQLG 89 (111)
T ss_pred HHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----ChhHHHHHHHHHHHhh
Confidence 455555543322 23333488999999999999987665 5666788899999999754 44444433333333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHh
Q 026717 183 SVFYYEILNSSEKACTMAKQEK 204 (234)
Q Consensus 183 SVF~yEi~~~~~~A~~iAk~Af 204 (234)
||-||+ ++..-|++++
T Consensus 90 s~~~Yk------k~v~kak~~L 105 (111)
T PF04781_consen 90 SVKYYK------KAVKKAKRGL 105 (111)
T ss_pred hHHHHH------HHHHHHHHHh
Confidence 333333 5555666554
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=87.86 E-value=29 Score=34.11 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhccCC-CCCCCHHHHHHHHHH---------HHhhhhhhhhHHHHHHhhhhhhhc
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSSTP-ATELTVEERNLLSVA---------YKNVIGSLRAAWRIISSIEQKEEG 77 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~-~~~Ls~eERnLlsva---------yKn~i~~~R~s~R~l~~ieqk~~~ 77 (234)
-+..+|.++-..|+|+++-.+++..++|... .+....+=-..|+.. |...+.=.+.+.+++. +....
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g~ 361 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPGE 361 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhccc
Confidence 4567888888899999999999988865420 012223322222211 2223333333333332 21111
Q ss_pred cc-ch--hhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHHH
Q 026717 78 RK-NE--EHVSLVKDYRS-KVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENT 153 (234)
Q Consensus 78 ~~-~~--~~~~~i~~yr~-ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 153 (234)
.. +. -+.++-.-|.. -=.+|-..+-+.+|++..... ...+...-.+++.|-.+|+|--. .+.|
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~~~~l~~la~~~~~~k~-----------~~~a 428 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGVGKPLNQLAEAYEELKK-----------YEEA 428 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhhhHHHHHHHHHHHHhcc-----------cchH
Confidence 10 00 01112122221 223555666677777765544 22344556777888888764321 4557
Q ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 026717 154 MLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (234)
Q Consensus 154 ~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (234)
.+.|.+|..+. ....|.||--++..+|.+.- |+-+|+.+.|++++..+.
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHH
Confidence 89999999999 78999999999999999886 556899999999998876
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.38 E-value=3.8 Score=27.71 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN-SSEKACTMAKQEKT 205 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~-~~~~A~~iAk~Afd 205 (234)
-+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 45689999999875 34444578888888777 67 79999999999875
No 12
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.41 E-value=51 Score=34.04 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=92.9
Q ss_pred HhCCHHHHHHHHHHHhhccCCCCCCCHHHH-HHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHH----
Q 026717 18 QAERYEEMVKFMDSLVTSSTPATELTVEER-NLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRS---- 92 (234)
Q Consensus 18 q~eRy~Dm~~~mk~~~~~~~~~~~Ls~eER-nLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~---- 92 (234)
.+|+|....+++.+..- ..+..-|| +.++.+|-. .++--.+.+.+..--.+.+. .+....++-.++.
T Consensus 335 ~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~~--ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSEQ--PSDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhcccccC--CCcchHHHHHHHHHHhc
Confidence 35777777777777653 23333343 234444432 23333444444321111110 1111222222222
Q ss_pred -HHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcc-cchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026717 93 -KVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIALTDLAP 170 (234)
Q Consensus 93 -ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~p 170 (234)
+.-+|..++...++++... .. ..-+---+++-|=-|-..|-..+ .++|+....++.++|++|.+ +.|
T Consensus 407 l~~~eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~ 475 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDP 475 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 2235666666665553311 01 11112236777888877776554 45788888999999999974 678
Q ss_pred CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 171 THPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 171 t~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
+|| -...+.|++|-+ .++.+.|.+.++.++..
T Consensus 476 ~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 476 TDP---LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred CCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 999 334555666665 79999999999998876
No 13
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.79 E-value=1.9 Score=26.02 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHP 173 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p 173 (234)
.+.|...|++|+++.++-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 467899999999999988999998
No 14
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=79.08 E-value=5 Score=27.86 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhhhh
Q 026717 172 HPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRPLR 211 (234)
Q Consensus 172 ~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a~~l~ 211 (234)
||.......|.+..|++ +|+.++|+..-++|++-...+.
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~ 39 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLG 39 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHC
Confidence 78888899999999997 8999999999999998865554
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=71.06 E-value=1.1e+02 Score=29.99 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
-...++.+..+.|+|++++..+++++.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445677888888999999999988886
No 16
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.42 E-value=4.7 Score=24.37 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHH
Q 026717 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACT 198 (234)
Q Consensus 156 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~ 198 (234)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 3677765 445555 456788898886 799999863
No 17
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.21 E-value=11 Score=21.31 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
-+..+|.+..+.|+++++++.++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 18
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=66.53 E-value=29 Score=36.53 Aligned_cols=89 Identities=15% Similarity=-0.009 Sum_probs=56.4
Q ss_pred HHhhhccCCCCCCchhHHHHHHhhhhhhhhh-hhhcccc--hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 026717 107 KLLDSHLVPSATAGESKVFYLKMKGDYYRYL-AEFKVGD--ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFS 183 (234)
Q Consensus 107 ~lId~~Lip~~~~~eskVfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~S 183 (234)
+++|. .|...+.....||++..|||+.-. |-+.-+. ++-.-.++|..+|+++++ +.|.||. +||+=
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~ 156 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-----ADRDNPE----IVKKL 156 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCcccHH----HHHHH
Confidence 55553 344444566778888888876433 2222221 122235678888998875 4477874 55555
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhhh
Q 026717 184 VFYYEILNSSEKACTMAKQEKTLT 207 (234)
Q Consensus 184 VF~yEi~~~~~~A~~iAk~Afd~a 207 (234)
-|+|.-. +.++|.+++++|+...
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHH
Confidence 5555555 9999999999998763
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=65.68 E-value=1.9e+02 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 9 li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
.+.+|.+..+.|+|++++...+++..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44556666677777777777776653
No 20
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.53 E-value=18 Score=20.82 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
-+..++++..+.|.++.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 21
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.32 E-value=28 Score=23.13 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+.+++...
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 4567777777643 44445555667777887 79999999988876654
No 22
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=61.53 E-value=19 Score=20.47 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 9 li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56788999999999999999999987
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=60.62 E-value=83 Score=24.89 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHH
Q 026717 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSL 86 (234)
Q Consensus 7 e~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 86 (234)
+-...++...-..|+|+++++.+++.++ . +|. +..-...++..|-.. +....+...+....+..... .......
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~-~p~-~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~-~~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--H-DPD-DYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNN-GDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-Ccc-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-HHHHHHH
Confidence 3456778888889999999999999986 2 133 444445555555432 44444444443222211111 1111111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 026717 87 VKDYR-SKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (234)
Q Consensus 87 i~~yr-~ki~~EL~~~C~eil~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (234)
..-|. ..--++-...+..+++. |.. .....+ +...|..|.- .|+ .+.|.+.|++++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~--~~~l~~~~~~-----~g~-----~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLY-PQPARS--LENAGLCALK-----AGD-----FDKAEKYLTRALQI-- 164 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------ccc-ccchHH--HHHHHHHHHH-----cCC-----HHHHHHHHHHHHHh--
Confidence 11111 11122333333333321 110 011111 1112333211 111 34577777777653
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 166 ~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.|.+| ....+.+..++. .|+.++|....+++.+.
T Consensus 165 ---~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 ---DPQRP---ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred ---CcCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 33343 334456666665 79999999888887664
No 24
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=58.71 E-value=43 Score=27.61 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026717 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (234)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~L 113 (234)
|.+|.|-|.-+..-.|......|.++|.+..--.+.-.+ .......-++-..+++++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999986433221100 0000012345556677777777777777777654
No 25
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.41 E-value=25 Score=23.74 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
+.|.++++.++.+ +|--..+-++++.+++. +|+.++|.....++.+.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 3455555555432 45556677778888887 79999999999888754
No 26
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=58.28 E-value=21 Score=21.47 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 9 li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 27
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=57.92 E-value=2e+02 Score=28.39 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcCC------CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 144 DERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 144 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.++..+++.-...|...++... .++ +-.|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4556666666666666554332 233 2357777778888888999999999999999999976
No 28
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.89 E-value=45 Score=30.03 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026717 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (234)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~L 113 (234)
|+.|.|-|.-|+...+.+....|.|+|-+..---+...+... ..=++--.+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999886433222211111 02245557788889888888888888765
No 29
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=55.83 E-value=48 Score=26.52 Aligned_cols=70 Identities=16% Similarity=0.030 Sum_probs=45.9
Q ss_pred hhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 026717 121 ESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMA 200 (234)
Q Consensus 121 eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iA 200 (234)
+....++-..|..+.-... .+.|...|+.|+.+. |.++.......|.++.+.. .|+.++|+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3455556666665543321 456888888888763 2333333456677666665 89999999999
Q ss_pred HHHhhh
Q 026717 201 KQEKTL 206 (234)
Q Consensus 201 k~Afd~ 206 (234)
++|+..
T Consensus 96 ~~Al~~ 101 (168)
T CHL00033 96 FQALER 101 (168)
T ss_pred HHHHHh
Confidence 998864
No 30
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=53.64 E-value=34 Score=21.32 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
-+..+|+...+.|+++++.+.++++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 31
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=53.08 E-value=57 Score=27.95 Aligned_cols=73 Identities=25% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026717 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (234)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~L 113 (234)
|+||.|-|.=|.--.|...-.-|-|.|-+.--.... -+..+.....-++-..+.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999989999988889888885211110 0000001113356667788888888888888888765
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=52.18 E-value=2.4e+02 Score=27.60 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 026717 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQ 73 (234)
Q Consensus 7 e~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieq 73 (234)
+.++..|+.+-.-|+|++++..+++.+. . +|+ +.+=+.++..+|-. .+....+...+....+
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 84 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQ--K-DPN-DAEARFLLGKIYLA-LGDYAAAEKELRKALS 84 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHH--h-CCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 4578889999999999999999999997 2 244 77788888888776 5777778777765443
No 33
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=49.98 E-value=99 Score=26.85 Aligned_cols=84 Identities=17% Similarity=0.293 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHH
Q 026717 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDY 90 (234)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~y 90 (234)
|+++|..+-.||+-+-.....-+ +..++|..-+-..++.=+...+..+|--.. +-.+.... -+-
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~SLe~~--LeQ 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQSLEES--LEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHH--HHH
Confidence 66677777777776654443322 234556666666666666666666665421 00000000 011
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026717 91 RSKVESELSDVCGSILKLLD 110 (234)
Q Consensus 91 r~ki~~EL~~~C~eil~lId 110 (234)
+.+=.+||..||+|+|.=++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 22334899999999887543
No 34
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=49.69 E-value=32 Score=24.19 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 026717 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQE 203 (234)
Q Consensus 156 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~A 203 (234)
-|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++|
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhcC
Confidence 36667776654 44555445555555544555 89999999876654
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=49.64 E-value=58 Score=23.45 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
+.|.+.|+.+.. +.|.||......++.+..++. +|+.++|.....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 456777777764 346776555555666666555 89999999999888776
No 36
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=49.05 E-value=55 Score=27.54 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026717 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (234)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~L 113 (234)
|++|.|-|.=|....|...-..|.++|.+..--.+.- +........-++-.++.++|+..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998889988888888888753111110 000000001234445666777777777777776654
No 37
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=48.14 E-value=67 Score=27.05 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026717 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (234)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~L 113 (234)
|+||.|-|.=|....|...-.-|.++|-+..--.+.- +........-++-..++++++..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888888888753111100 000000011245556677777777777777777654
No 38
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=47.10 E-value=85 Score=25.27 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.+.|...|++|+++.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 51 ~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 51 YAEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 3467888888887542 223233456677777766 79999999999988875
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=47.02 E-value=4e+02 Score=28.67 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
..+.+|++.-..|+|++++..++++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 457889999999999999999999986
No 40
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=46.81 E-value=71 Score=27.10 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026717 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (234)
Q Consensus 40 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~L 113 (234)
|+||.|-|.=|....|...-.-|.++|.+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999889999888888888885321111000 0000011244456666777777777777777654
No 41
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=44.76 E-value=2.2e+02 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 026717 174 IRLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (234)
Q Consensus 174 irLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (234)
.+.....+.+.++.+ .|+.++|..+.+++.
T Consensus 184 ~~~~~~~~la~~~~~-~G~~~~A~~~~~~~~ 213 (355)
T cd05804 184 LRGHNWWHLALFYLE-RGDYEAALAIYDTHI 213 (355)
T ss_pred hhHHHHHHHHHHHHH-CCCHHHHHHHHHHHh
Confidence 334455566776655 788888888888875
No 42
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=44.59 E-value=1.2e+02 Score=23.72 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
-+.|...|++|+.. .| +.+.|-+..++.+--+- .+|++++|..+-++++..
T Consensus 17 ~~~Ai~~Y~~Al~~---gL--~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 17 EEEAIPLYRRALAA---GL--SGADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHHc---CC--CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 35688999999752 34 45555566666665555 489999999999988876
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.55 E-value=37 Score=34.23 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=49.2
Q ss_pred HhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 128 KMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 128 KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
++-++.||-+.....---|++--+.|+-.|++|++ +||.-.-+.-=...++.. +|..++|+++-++|+-.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAIHL 552 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHHhc
Confidence 56677777666655444455556677777777764 456556666666777776 89999999999998854
No 44
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.25 E-value=27 Score=24.65 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 026717 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (234)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~ 202 (234)
+.|...|+++++.. |++| .-...++.+.-||. .|+.++|+.+.++
T Consensus 6 ~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~-~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 6 ENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQ-QGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHH-TTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 45566666666543 3444 44566667777887 7999999999977
No 45
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=44.14 E-value=66 Score=31.80 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=52.0
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCch-----------------hHHHHHHHHHHHHHHhCCH
Q 026717 131 GDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPI-----------------RLGLALNFSVFYYEILNSS 193 (234)
Q Consensus 131 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pi-----------------rLgL~LN~SVF~yEi~~~~ 193 (234)
+|.|-.+||-... .+..+++.|++|++.++..+.....+ +.++--..+..... +|..
T Consensus 202 AdAYILLAEEeA~-----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCark-lGr~ 275 (539)
T PF04184_consen 202 ADAYILLAEEEAS-----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARK-LGRL 275 (539)
T ss_pred hHHHhhccccccc-----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHH-hCCh
Confidence 3455556663322 24456666777776666544432210 11122223444444 6999
Q ss_pred HHHHHHHHHHhhhh-----hhhhcchhhhccccCC
Q 026717 194 EKACTMAKQEKTLT-----RPLRRPLLSWTLWVKN 223 (234)
Q Consensus 194 ~~A~~iAk~Afd~a-----~~l~dni~~W~~~~~~ 223 (234)
++|+++.+.=..+. +.+|.||..|-.+++-
T Consensus 276 ~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 276 REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 99999999877543 6689999999887653
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=44.02 E-value=3.7e+02 Score=27.45 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 10 VYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 10 i~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
..+|.+.-..|++++++..+++++.
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444555555555555543
No 47
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=43.07 E-value=57 Score=18.61 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 9 li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+..++.+..+.|+|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45688889999999999999999997
No 48
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=42.11 E-value=83 Score=20.62 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
+.|...|++++. .+|-.-..-+..+..++. .|++++|...-+++.+.
T Consensus 14 ~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 14 DEAIAAFEQALK--------QDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 445666666543 345555666667777775 89999999888887653
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=42.10 E-value=3.5e+02 Score=26.58 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLTRP 209 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a~~ 209 (234)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|.+.+..
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhcc
Confidence 3446666766664 4566654 23344555555 89999999999988877643
No 50
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=40.31 E-value=3e+02 Score=25.68 Aligned_cols=108 Identities=6% Similarity=-0.011 Sum_probs=55.1
Q ss_pred CCCC-CCchhHHHHHHhhhhhhhhhhhhcccchHHHHHHH-------HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 026717 114 VPSA-TAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAEN-------TMLSYKAAQDIALTDLAPTHPIRLGLALNFSVF 185 (234)
Q Consensus 114 ip~~-~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~-------a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF 185 (234)
+|.. .++.+.-|+..--.++-+.+-++....--.+...+ ..++.++-+++.+.+-+|..+.-.- .+-++.+
T Consensus 123 lP~~~~~~~~~~y~~~el~~l~~~LE~~~G~~i~~e~L~~ai~~~n~~r~~~~~~~~l~~~~p~pitg~e~~-~~~~~~~ 201 (377)
T TIGR03190 123 MPNEVQSPHARKAHYAEVQRFRVFLQTLTGKEITDDMLRDALAVCDENRRLLRELFDYRKEADPKVTGVEAL-YASLTAQ 201 (377)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCHHHHH-HHHHHhc
Confidence 4654 34556667666666777777666432211222333 3334444445554444444443221 2223332
Q ss_pred HHHHhCCHHHHHHHHHHHhhhhhhhhcchhhhccccCCCceEeecccc
Q 026717 186 YYEILNSSEKACTMAKQEKTLTRPLRRPLLSWTLWVKNPTRIALLSCN 233 (234)
Q Consensus 186 ~yEi~~~~~~A~~iAk~Afd~a~~l~dni~~W~~~~~~~~~~~~~~~~ 233 (234)
+.++++..++.++-.++.... + ...+...||++..|-
T Consensus 202 ----~~~~~~~~~~l~~l~~el~~~------~-~~~~~~~ril~tG~~ 238 (377)
T TIGR03190 202 ----FIDKREHNEMLKKVLAALPSR------K-VERKTGARFMTIGSE 238 (377)
T ss_pred ----CCCHHHHHHHHHHHHHHHHhc------c-ccCCCCeEEEEECCC
Confidence 347888888877766654332 2 112445577777663
No 51
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.61 E-value=2.5e+02 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhh
Q 026717 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIG 59 (234)
Q Consensus 24 Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~ 59 (234)
..++..+++++ . ..+||.+|++.|..+...++-
T Consensus 83 ~~L~aa~el~e-e--~eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIE-E--DEELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHH-H--hhcCCHHHHHHHHhhhHHHhh
Confidence 45677778887 2 389999999999999988774
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=36.59 E-value=1.1e+02 Score=28.30 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.-|++|+..+.. .+.|.+| ...++.++.++. +|+.+.|+...++|+..
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Confidence 445556655543 3555554 234455555554 68888888888887765
No 53
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.16 E-value=1.2e+02 Score=27.49 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTD----------LAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~----------L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.....+.|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++.
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHH
Confidence 344566677666655432 233466889999999999999 79999999999988776
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=35.69 E-value=1.3e+02 Score=23.86 Aligned_cols=49 Identities=18% Similarity=0.028 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH------HHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYY------EILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~y------Ei~~~~~~A~~iAk~Afd~ 206 (234)
.+.|...|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|....++|+.-
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 35688889888865 3333 233445555555 2378888887777766643
No 55
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=35.69 E-value=34 Score=23.27 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhhhhhcch
Q 026717 194 EKACTMAKQEKTLTRPLRRPL 214 (234)
Q Consensus 194 ~~A~~iAk~Afd~a~~l~dni 214 (234)
++|.++|++|+....++|+=+
T Consensus 12 e~aa~iAk~A~~~g~svre~v 32 (55)
T PF10415_consen 12 EKAAEIAKEALAEGRSVREVV 32 (55)
T ss_dssp HHHHHHHHHHHHHT--HHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 489999999999987776644
No 56
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=34.79 E-value=1.1e+02 Score=27.13 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhhhhhcchhhhcc
Q 026717 153 TMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNS-------------SEKACTMAKQEKTLTRPLRRPLLSWTL 219 (234)
Q Consensus 153 a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~-------------~~~A~~iAk~Afd~a~~l~dni~~W~~ 219 (234)
-...-.+.+++...+|-|...- -.--|||+...|| ...+.+-|.+|++.|..+-.+ ..
T Consensus 92 L~~iC~eil~lid~~Lip~~~~-----~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~----~L 162 (244)
T smart00101 92 LSKICDGILKLLESHLIPSASA-----AESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA----EL 162 (244)
T ss_pred HHHHHHHHHHHHHHhCccccCc-----HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc----cC
Confidence 3444455667776666554321 1334777665543 346788899999998766433 57
Q ss_pred ccCCCceEee
Q 026717 220 WVKNPTRIAL 229 (234)
Q Consensus 220 ~~~~~~~~~~ 229 (234)
...+|+|+.|
T Consensus 163 ~pt~PirLgL 172 (244)
T smart00101 163 PPTHPIRLGL 172 (244)
T ss_pred CCCCHHHHHH
Confidence 7889998865
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.93 E-value=59 Score=29.05 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.+.|.+.|++|+.++- -+ =-+--||.-|+.. .|.+++|.+.-.+|...
T Consensus 85 ~~~A~e~YrkAlsl~p-----~~---GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 85 NDLADESYRKALSLAP-----NN---GDVLNNYGAFLCA-QGRPEEAMQQFERALAD 132 (250)
T ss_pred hhhHHHHHHHHHhcCC-----Cc---cchhhhhhHHHHh-CCChHHHHHHHHHHHhC
Confidence 5678999999986543 22 2245689999999 57999999998888776
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=33.08 E-value=1.6e+02 Score=22.02 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
+.|...|++++.+ .|.+ .....+.+..++ ..|+.++|+..-++++..
T Consensus 68 ~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 68 EEAIDAYALAAAL-----DPDD---PRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4567777777653 3444 334466666555 489999999999888865
No 59
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.07 E-value=2.3e+02 Score=21.96 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=21.2
Q ss_pred hHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHH
Q 026717 122 SKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQ 161 (234)
Q Consensus 122 skVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 161 (234)
.+-+++-++||.|.-. |+ .+.|..+|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~~-----g~-----~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQ-----GD-----YDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHhC
Confidence 4566788999977432 32 567899999884
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=33.00 E-value=2.7e+02 Score=23.28 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=10.6
Q ss_pred hCCHHHHHHHHHHHhhh
Q 026717 190 LNSSEKACTMAKQEKTL 206 (234)
Q Consensus 190 ~~~~~~A~~iAk~Afd~ 206 (234)
.|+.++|+..-+++++.
T Consensus 157 ~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 157 QADYAQAIELWQKVLDL 173 (198)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 56666666666666554
No 61
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=32.18 E-value=75 Score=16.02 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 9 li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+..++.+..+.++|++++..+.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998886
No 62
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=31.88 E-value=1.8e+02 Score=22.80 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.+.|..+|+.|+. +.|.||- ...|.++-+. -+|++++|+....+|...
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~~l~-~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGVCLK-MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4568889998875 4556652 1233333333 389999999999888764
No 63
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=31.04 E-value=1.5e+02 Score=19.26 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHH
Q 026717 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRII 68 (234)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l 68 (234)
.+|...-+.|+|++++..+++++. . .+-+.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~--~P~~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--Q--DPDNPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--C--STTHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--H--CCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 467888899999999999999997 2 2336666666666654 334444443333
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.79 E-value=6e+02 Score=26.03 Aligned_cols=49 Identities=8% Similarity=-0.005 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (234)
-+.|..+|+++.. .||-.=..-++++.-+.+ +|+.+.|...-++|++..
T Consensus 170 ~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 170 SEQADACFERLSR--------QHPEFENGYVGWAQSLTR-RGALWRARDVLQAGLDAI 218 (694)
T ss_pred hHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Confidence 4567888888864 234333456677777776 799999999999998874
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=30.37 E-value=6e+02 Score=25.91 Aligned_cols=26 Identities=8% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 9 li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+..+|.++...|++++++..+++++.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777888888888777775
No 66
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.81 E-value=1e+02 Score=19.98 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 026717 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (234)
Q Consensus 10 i~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLls 51 (234)
+.+|+.+-..|.++.+.+.+.+++. .++++.-.+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 5689999999999999999999996 222444445555553
No 67
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.71 E-value=1.3e+02 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 7 e~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
-+++..|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567778788999999999988777664
No 68
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.28 E-value=3.4e+02 Score=23.34 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=44.6
Q ss_pred hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 130 KGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 130 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.+=.||.+-+ .+.-+.+..+|.+.|++|++.- ..|.+.--...+..=-+-..+. +|+.++|.+--...|..
T Consensus 124 lAWlyR~~~~---~~~E~~fl~~Al~~y~~a~~~e--~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 124 LAWLYRDLGD---EENEKRFLRKALEFYEEAYENE--DFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhhccCC---HHHHHHHHHHHHHHHHHHHHhC--cCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence 3556666654 3444668999999999999754 3433332233333333444444 79999998877766654
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=28.17 E-value=7.8e+02 Score=26.48 Aligned_cols=56 Identities=11% Similarity=-0.073 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 026717 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (234)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~i 71 (234)
.++.++-..|+|++++..+++++. . .|. +..=...|..+|.. .+....+.+.+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~--~-~P~-~~~a~~~Lg~~~~~-~g~~~eA~~~y~~a 411 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ--V-DNT-DSYAVLGLGDVAMA-RKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--h-CCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 345666778999999999999997 2 243 23333445555533 35555555555443
No 70
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=27.06 E-value=1.8e+02 Score=21.53 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHH----HHHHHHHHHHHHhCCHHHHHH
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFYYEILNSSEKACT 198 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLg----L~LN~SVF~yEi~~~~~~A~~ 198 (234)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+- +-...-||++
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN-aQSn~iKa~K 69 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN-AQSNTVKVFK 69 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334445555555432 58999999998 6667877754 3344444444
No 71
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.94 E-value=2.3e+02 Score=24.75 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCC-----chhHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 026717 94 VESELSDVCGSILKLLDSHLVPSATA-----GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (234)
Q Consensus 94 i~~EL~~~C~eil~lId~~Lip~~~~-----~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (234)
..+.-..--++.+++....|-|.... -.-.|||+.+.|| ..++++-|.++|..|..-.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-------------~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND-------------PEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--------------HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHHHHhhh
Confidence 44444555566778888876554321 1445788777666 3456777888888887644
No 72
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=4.3e+02 Score=24.35 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=42.9
Q ss_pred hhhhhhhhcccch----HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH---Hhh
Q 026717 133 YYRYLAEFKVGDE----RKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ---EKT 205 (234)
Q Consensus 133 yyRYlaE~~~~~~----~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~---Afd 205 (234)
-++|++.+...+. -.+++..+...| ..++..+|.-|...+.+= .=+++..+-.+-.+|.. +..
T Consensus 223 aWnYL~G~l~~d~gl~s~s~vv~f~~~l~--------~~~~~~sP~lla~l~d~~--~e~~l~~~~~~~~~a~~a~~ly~ 292 (318)
T KOG0530|consen 223 AWNYLKGLLELDSGLSSDSKVVSFVENLY--------LQLPKRSPFLLAFLLDLY--AEDALAYKSSAEELARKAVKLYE 292 (318)
T ss_pred HHHHHHHHHHhccCCcCCchHHHHHHHHh--------hccCCCChhHHHHHHHHH--HHHHhhccccchHHHHHHHHHHH
Confidence 3677777755321 234566666665 246677787777666542 12333333333333333 333
Q ss_pred h----hhhhhcchhhhcc
Q 026717 206 L----TRPLRRPLLSWTL 219 (234)
Q Consensus 206 ~----a~~l~dni~~W~~ 219 (234)
. ..+.|.|.+.|.+
T Consensus 293 ~La~~~DpiR~nyW~~~~ 310 (318)
T KOG0530|consen 293 DLAIKVDPIRKNYWRHKQ 310 (318)
T ss_pred HHhhccCcHHHHHHHHHH
Confidence 3 3789999999973
No 73
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=26.00 E-value=2.1e+02 Score=25.24 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (234)
.+.|.-.|.+|-.+.. .++|....+|+ +.+|+.+-.+..-++.+.|+..-++|++-.
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3557778888877765 78888989998 778999999984339999999999999884
No 74
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=25.92 E-value=1.1e+02 Score=22.52 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=29.5
Q ss_pred HHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHH
Q 026717 127 LKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALT-DLAPTHPIRLGLALNFSVFY 186 (234)
Q Consensus 127 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~pirLgL~LN~SVF~ 186 (234)
.+++.|=|+-+.++..= .|+.|-++|.+ .+++.||-|+.-++-|.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 45556666666655321 15666677765 79999999999999887765
No 75
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=24.02 E-value=3.5e+02 Score=22.43 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 026717 145 ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEK 204 (234)
Q Consensus 145 ~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Af 204 (234)
....--+.|.++|+.|.. |.|.||-- ..|.++-+.- +|+.+.|..-=+.|+
T Consensus 80 Q~~g~~~~AI~aY~~A~~-----L~~ddp~~---~~~ag~c~L~-lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 80 QAQKHWGEAIYAYGRAAQ-----IKIDAPQA---PWAAAECYLA-CDNVCYAIKALKAVV 130 (157)
T ss_pred HHHhhHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 334446778899998875 45566632 4555565554 799998877666666
No 76
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.90 E-value=1.1e+02 Score=19.18 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=25.7
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 026717 132 DYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (234)
Q Consensus 132 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 171 (234)
|.|--++|+.-..++ -++|.+=|++|+++=++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 455556676655443 3567888999999988778763
No 77
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=23.62 E-value=5e+02 Score=25.67 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH---HHhhhhhhhhHHHHHHhhhhhhhcccchhhHHHHHHHHHHHH
Q 026717 21 RYEEMVKFMDSLVTSSTPATELTVEERNLLSVA---YKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVE 95 (234)
Q Consensus 21 Ry~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsva---yKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~ 95 (234)
..++.-++|+.... ..+.-.+|..+|..| |..++..-+..+..|..--|+|....+....++++.||.++.
T Consensus 120 ~L~~v~~~~~~~~~----~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~ 193 (508)
T PF00901_consen 120 DLEKVYKFMKGQEK----VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKID 193 (508)
T ss_pred HHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35556666665543 245566677777665 556777778888888777788766656667788899988864
No 78
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=23.39 E-value=1.6e+02 Score=31.32 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 026717 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTLT 207 (234)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~a 207 (234)
++|+.|+.+-.. ...|.||+-|...-|+=+| -++.+.++.+|-.||...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhh
Confidence 667777766654 6889999988887776443 689999999999988764
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.23 E-value=2.2e+02 Score=26.24 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Q 026717 26 VKFMDSLVTSSTPATELTVEERNLLSVAYKNV 57 (234)
Q Consensus 26 ~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~ 57 (234)
+.++++.+. .+..+.++---+-|+...+
T Consensus 11 ~~~~~~~~~----~~~~s~~~~esleva~qc~ 38 (304)
T KOG0553|consen 11 IQFLKQKSS----FGWISEDGAESLEVAIQCL 38 (304)
T ss_pred HHhHHHHhh----cCCCCCcchhHHHHhHHHH
Confidence 556666664 2667777766666665553
No 80
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=23.18 E-value=2.7e+02 Score=19.37 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+++..|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677888999999999888775
No 81
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=22.96 E-value=1.5e+02 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
.++.+|--+++.|||++++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456777778899999999888777665
No 82
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=22.92 E-value=93 Score=26.79 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
-+.|.++|++|..- . ..| ..++...+|+.|||..||.
T Consensus 15 Ye~A~~~Ye~av~n---g---~~~--------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 15 YETARQAYEEAVAN---G---SSP--------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---C---CCH--------------HHHHHHHHHHhHHHHHHhH
Confidence 46789999998752 1 111 1356677999999999987
No 83
>PF12603 DUF3770: Protein of unknown function (DUF3770); InterPro: IPR022531 This family is found in viruses, and is approximately 250 amino acids in length. It is found N-terminal to PF04196 from PFAM in polyproteins.; GO: 0003968 RNA-directed RNA polymerase activity
Probab=22.72 E-value=3e+02 Score=24.66 Aligned_cols=95 Identities=27% Similarity=0.406 Sum_probs=52.3
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhhhHHHHHHh---------hhhh
Q 026717 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS---------IEQK 74 (234)
Q Consensus 4 ~~re~li~~Aklaeq~eRy~Dm~~~mk~~~~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~---------ieqk 74 (234)
.+-++|+|+=+||-+. +.+|-.+.-.+.. . ..+|+..||.++++ |++.+--|..-.+ .++-
T Consensus 3 devnELvfRfRlA~~I--~ee~k~~~pel~~--~-Deel~k~erei~~i-----vssIq~dw~~te~kFp~f~~emfe~F 72 (250)
T PF12603_consen 3 DEVNELVFRFRLARAI--MEEMKKYYPELSD--D-DEELSKQEREILGI-----VSSIQMDWEVTESKFPPFKEEMFENF 72 (250)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHhcccccc--c-hHHHHHhHHHHHhh-----HhheecccccCcccCCccHHHHHHHH
Confidence 3568999999999876 3333222222222 1 25566666666655 5554445544321 1110
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 026717 75 EEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSA 117 (234)
Q Consensus 75 ~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lId~~Lip~~ 117 (234)
-.. ..=.+|-.+|..+...-|.+- +++.+.+...
T Consensus 73 ~~~-------~~D~dYls~iis~~~~~s~~~--l~~~~f~~~~ 106 (250)
T PF12603_consen 73 LQT-------SADEDYLSSIISECLKESQKD--LIKSHFLGKV 106 (250)
T ss_pred cCC-------CccHHHHHHHHHHHHHHHHHH--HHhccccccc
Confidence 000 111568888888888888875 4466665443
No 84
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.30 E-value=1.6e+02 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 7 e~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
.+++..|--.+++|+|++++.+..+.++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566667777889999999999988875
No 85
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=22.18 E-value=4.8e+02 Score=21.95 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=36.7
Q ss_pred HhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 026717 128 KMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLA 179 (234)
Q Consensus 128 KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~ 179 (234)
+-+-||=||.........-.+-.+.|.+.|+..-+.-+.+||.-.-.+.++.
T Consensus 113 ~KllDYdr~~~~~~k~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l 164 (195)
T cd07589 113 DKLLDYERYKEKKERGGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLL 164 (195)
T ss_pred hhhccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456888888877544433344677889999888888889998776665543
No 86
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=22.14 E-value=1.6e+02 Score=20.54 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
+++..|--.+++|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667888888888888877764
No 87
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=21.73 E-value=5.7e+02 Score=22.71 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 180 LNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 180 LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
++.+..+. -.|+.++|..+.++++..
T Consensus 286 ~~la~~~~-~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 286 LALAQLLE-EQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHh
Confidence 34444433 468899999888888776
No 88
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.72 E-value=1.8e+02 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 11 YLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 11 ~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
....=.=|.|+|+++.+++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444678999999999999985
No 89
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=21.57 E-value=1.1e+02 Score=24.82 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCc-------hhHHHHHHhhhhhh
Q 026717 95 ESELSDVCGSILKLLDSHLVPSATAG-------ESKVFYLKMKGDYY 134 (234)
Q Consensus 95 ~~EL~~~C~eil~lId~~Lip~~~~~-------eskVfy~KmkgDyy 134 (234)
..=+.++|+||+.+|...+......+ -.|-||+|+-=+-|
T Consensus 74 Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf 120 (131)
T cd05493 74 YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVF 120 (131)
T ss_pred eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhc
Confidence 34577899999999988874332222 24678887654433
No 90
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=20.34 E-value=3.5e+02 Score=19.68 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHhhhh----hhhhHHHHHHhhhhhh
Q 026717 41 ELTVEERNLLSVAYKNVIG----SLRAAWRIISSIEQKE 75 (234)
Q Consensus 41 ~Ls~eERnLlsvayKn~i~----~~R~s~R~l~~ieqk~ 75 (234)
.-+.+-|.+.-.+..++|. ..|++|+++-++-...
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 3567888888888888887 6799999997765543
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.28 E-value=3e+02 Score=24.45 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 026717 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQEKTL 206 (234)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yEi~~~~~~A~~iAk~Afd~ 206 (234)
.-|++|....+. ...|.||.+-...+..+..+++ +|++++|+.+-++....
T Consensus 194 g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 194 GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 344555554443 3457888888888888777776 79999999998877654
No 92
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.20 E-value=2.1e+02 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 026717 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (234)
Q Consensus 8 ~li~~Aklaeq~eRy~Dm~~~mk~~~~ 34 (234)
.++..|--+++.|+|++++++=++.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778888889999998888777664
Done!