BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026718
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 253 bits (645), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 174/233 (74%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++SSGHNVTA DL ASG+ P+Q + + SD+ PL++FMA+LP ++K+ILVGH+ GGL
Sbjct: 34 LMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEFMASLPANEKIILVGHALGGL 93
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
A++++ME FP KISVAVF+S L PGP+++ +T+ ++ S LD Y++GP +PPT
Sbjct: 94 AISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPT 153
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
T I GP +L + VY LSP+ED ALAT L+RPL L+ ED+SKE+ L+ +RYG+V+RV+I+
Sbjct: 154 TLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIV 213
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNY 233
+ ++ +K+ MI++NPP +V+EI+ SDH+ MMSKP +L+ LLSIA Y
Sbjct: 214 ATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVTMMSKPQQLFTTLLSIANKY 266
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 253 bits (645), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 174/233 (74%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++SSGHNVTA DL ASG+ P+Q + + SD+ PL++FMA+LP ++K+ILVGH+ GGL
Sbjct: 34 LMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEFMASLPANEKIILVGHALGGL 93
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
A++++ME FP KISVAVF+S L PGP+++ +T+ ++ S LD Y++GP +PPT
Sbjct: 94 AISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPT 153
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
T I GP +L + VY LSP+ED ALAT L+RPL L+ ED+SKE+ L+ +RYG+V+RV+I+
Sbjct: 154 TLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIV 213
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNY 233
+ ++ +K+ MI++NPP +V+EI+ SDH+ MMSKP +L+ LLSIA Y
Sbjct: 214 ATENDALKKEFLKLMIEKNPPDEVKEIEGSDHVTMMSKPQQLFTTLLSIANKY 266
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 173/233 (74%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++SSGHNVTA DL ASG+ P+Q + + SD+ PL++FMA+LP ++K+ILVGH+ GGL
Sbjct: 34 LMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEFMASLPANEKIILVGHALGGL 93
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
A++++ME FP KISVAVF+S L PGP+++ +T+ ++ S LD Y++GP +PPT
Sbjct: 94 AISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPT 153
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
T I GP +L + VY LSP+ED ALAT L+RPL L+ ED+SKE+ L+ +RYG+V+RV+I+
Sbjct: 154 TLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIV 213
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNY 233
+ ++ +K+ MI++NPP +V+EI+ SD + MMSKP +L+ LLSIA Y
Sbjct: 214 ATENDALKKEFLKLMIEKNPPDEVKEIEGSDAVTMMSKPQQLFTTLLSIANKY 266
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 153/233 (65%), Gaps = 5/233 (2%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++S+GH VTA DL+A+G+ P+++ + + D+ +PL++ MA++P D+KV+L+GHS+GG+
Sbjct: 32 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGM 91
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGP---LLDCKYAYDDGPDS 117
++ +ME +P KISVAVF+SA+ P P+ ++ T E ++ + P +LD +++ P++
Sbjct: 92 SLGLAMETYPEKISVAVFMSAMMPDPNHSL-TYPFEKYNEKCPADMMLDSQFSTYGNPEN 150
Query: 118 PPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRV 177
P + I GP ++ ++Q VED LA ML RP LF +D++K K + ERYG+V+R
Sbjct: 151 PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFF-QDLAKAKKFSTERYGSVKRA 209
Query: 178 YIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIA 230
YI +D + W ++ +V+EIK++DHM M+S+P E+ LL I+
Sbjct: 210 YIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHMGMLSQPREVXKXLLDIS 262
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 153/233 (65%), Gaps = 5/233 (2%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++S+GH VTA DL+A+G+ P+++ + + D+ +PL++ MA++P D+KV+L+GHS+GG+
Sbjct: 32 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGM 91
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGP---LLDCKYAYDDGPDS 117
++ +ME +P KISVAVF+SA+ P P+ ++ T E ++ + P +LD +++ P++
Sbjct: 92 SLGLAMETYPEKISVAVFMSAMMPDPNHSL-TYPFEKYNEKCPADMMLDSQFSTYGNPEN 150
Query: 118 PPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRV 177
P + I GP ++ ++Q VED LA ML RP LF +D++K K + ERYG+V+R
Sbjct: 151 PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFF-QDLAKAKKFSTERYGSVKRA 209
Query: 178 YIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIA 230
YI +D + W ++ +V+EIK++DHM M+S+P E+ LL I+
Sbjct: 210 YIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADHMGMLSQPREVXKCLLDIS 262
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 152/233 (65%), Gaps = 5/233 (2%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++S+GH VTA DL+A+G+ P+++ + + D+ +PL++ MA++P D+KV+L+GHS+GG+
Sbjct: 32 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGM 91
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGP---LLDCKYAYDDGPDS 117
++ +ME +P KISVAVF+SA+ P P+ ++ T E ++ + P +LD +++ P++
Sbjct: 92 SLGLAMETYPEKISVAVFMSAMMPDPNHSL-TYPFEKYNEKCPADMMLDSQFSTYGNPEN 150
Query: 118 PPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRV 177
P + I GP ++ ++Q VED LA ML RP LF +D++K K + ERYG+V+R
Sbjct: 151 PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFF-QDLAKAKKFSTERYGSVKRA 209
Query: 178 YIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIA 230
YI +D + W ++ +V+EIK++D M M+S+P E+ LL I+
Sbjct: 210 YIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAMGMLSQPREVCKCLLDIS 262
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 152/233 (65%), Gaps = 5/233 (2%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++S+GH VTA DL+A+G+ P+++ + + D+ +PL++ MA++P D+KV+L+GHS+GG+
Sbjct: 26 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGM 85
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGP---LLDCKYAYDDGPDS 117
++ +ME +P KISVAVF+SA+ P P+ ++ T E ++ + P +LD +++ P++
Sbjct: 86 SLGLAMETYPEKISVAVFMSAMMPDPNHSL-TYPFEKYNEKCPADMMLDSQFSTYGNPEN 144
Query: 118 PPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRV 177
P + I GP ++ ++Q VED LA ML RP LF +D++K K + ERYG+V+R
Sbjct: 145 PGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFF-QDLAKAKKFSTERYGSVKRA 203
Query: 178 YIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIA 230
YI +D + W ++ +V+EIK++D M M+S+P E+ LL I+
Sbjct: 204 YIFCNEDKSFPVEFQKWFVESVGADKVKEIKEADAMGMLSQPREVCKCLLDIS 256
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 145/233 (62%), Gaps = 1/233 (0%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++S+GH VTA +LAASG++P+ + + ++ ++ KPLI+ + +LP +++VILVG S+GG+
Sbjct: 26 LLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIETLKSLPENEEVILVGFSFGGI 85
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
+A + + FP KI V VF++A P S + + G L DC+++ + + +
Sbjct: 86 NIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMS 145
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
GP ++K+ +YQ P+ED+ LA ML R G F ED+SK+ K + E YG+V+RVY++
Sbjct: 146 LLKMGPKFMKARLYQNCPIEDYELAKMLHRQ-GSFFTEDLSKKEKFSEEGYGSVQRVYVM 204
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNY 233
S +D D WMI +V EI DHMVM+SKP +L+ L +IA +Y
Sbjct: 205 SSEDKAIPCDFIRWMIDNFNVSKVYEIDGGDHMVMLSKPQKLFDSLSAIATDY 257
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 5/237 (2%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++++GH VTA DLAASG + +++ LR++ D+ PL + +L D+KVILVGHS GG
Sbjct: 26 LLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXELXESLSADEKVILVGHSLGGX 85
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPL---LDCKYAYDDGPDS 117
+ + E++P KI AVF++A P N S+ E ++ + P LD ++ P+
Sbjct: 86 NLGLAXEKYPQKIYAAVFLAAFXPDSVHN-SSFVLEQYNERTPAENWLDTQFLPYGSPEE 144
Query: 118 PPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRV 177
P T+ FGP +L +YQL ED ALA+ L+RP LF ED+SK T ER+G+V+RV
Sbjct: 145 PLTSXFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFX-EDLSKAKYFTDERFGSVKRV 203
Query: 178 YIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNYS 234
YI+ +D ++ W I + EIK +DH + +P +L A LL IA Y+
Sbjct: 204 YIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADHXAXLCEPQKLCASLLEIAHKYN 260
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 5/237 (2%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
+++++GH VTA DLAASG + +++ LR++ D+ PL + +L D+KVILVGHS GG
Sbjct: 26 LLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXELXESLSADEKVILVGHSLGGX 85
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPL---LDCKYAYDDGPDS 117
+ + E++P KI AVF++A P N S+ E ++ + P LD ++ P+
Sbjct: 86 NLGLAXEKYPQKIYAAVFLAAFXPDSVHN-SSFVLEQYNERTPAENWLDTQFLPYGSPEE 144
Query: 118 PPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRV 177
P T+ FGP +L +YQL ED ALA+ L+RP LF ED+SK T ER+G+V+RV
Sbjct: 145 PLTSXFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFX-EDLSKAKYFTDERFGSVKRV 203
Query: 178 YIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNYS 234
YI+ +D ++ W I + EIK +DH + +P +L A LL IA Y+
Sbjct: 204 YIVCTEDKGIPEEFQRWQIDNIGVTEAIEIKGADHXAXLCEPQKLCASLLEIAHKYN 260
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 129/234 (55%), Gaps = 1/234 (0%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
++++ GH VTA DLAASGV+P+Q+ + S ++ +PL+ F+ ALP +KVILVG S GGL
Sbjct: 25 LLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTFLEALPPGEKVILVGESCGGL 84
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
+A + +++ KI+ AVF +++ P + S + + D Y T
Sbjct: 85 NIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEIT 144
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
G L+ +Y L E++ LA ML R LF + ++K T E YG+++++Y+
Sbjct: 145 GLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLF-QNILAKRPFFTKEGYGSIKKIYVW 203
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNYS 234
+++D + + +W I+ P +V +++ DH++ ++K E+ L +A Y+
Sbjct: 204 TDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHLLQLTKTKEIAEILQEVADTYN 257
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 1/234 (0%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
++++ GH VTA DLAASGV+P+Q+ + S ++ +PL+ F+ ALP +KVILVG S GGL
Sbjct: 24 LLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTFLEALPPGEKVILVGESCGGL 83
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
+A + +++ KI+ AVF +++ P + S + + D Y T
Sbjct: 84 NIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEIT 143
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
G L+ +Y L E++ LA ML R LF + ++K T E YG+++++Y+
Sbjct: 144 GLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLF-QNILAKRPFFTKEGYGSIKKIYVW 202
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNYS 234
+++D + + +W I+ P +V +++ DH + ++K E+ L +A Y+
Sbjct: 203 TDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQLTKTKEIAEILQEVADTYN 256
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 1/234 (0%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
++++ GH VTA DLAASGV+P+Q+ + S ++ +PL+ F+ ALP +KVILVG S GGL
Sbjct: 25 LLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTFLEALPPGEKVILVGESCGGL 84
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
+A + +++ KI+ AVF +++ P + S + + D Y T
Sbjct: 85 NIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEIT 144
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
G L+ +Y L E++ LA ML R LF + ++K T E YG+++++Y+
Sbjct: 145 GLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLF-QNILAKRPFFTKEGYGSIKKIYVW 203
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNYS 234
+++D + + +W I+ P +V +++ DH + ++K E+ L +A Y+
Sbjct: 204 TDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQLTKTKEIAEILQEVADTYN 257
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 1/234 (0%)
Query: 1 MIKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL 60
++++ GH VTA DLAASGV+P+Q+ + S ++ +PL+ F+ ALP +KVILVG S GGL
Sbjct: 25 LLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTFLEALPPGEKVILVGESCGGL 84
Query: 61 AVAQSMERFPNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPPT 120
+A + +++ KI+ AVF +++ P + S + + D Y T
Sbjct: 85 NIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEIT 144
Query: 121 TFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRRVYII 180
G L+ +Y L E++ LA ML R LF + ++K T E YG+++++Y+
Sbjct: 145 GLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLF-QNILAKRPFFTKEGYGSIKKIYVW 203
Query: 181 SEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGNYS 234
+++D + + +W I+ P +V +++ DH + ++K E+ L +A Y+
Sbjct: 204 TDQDEIFLPEFQLWQIENYKPDKVYKVEGGDHKLQLTKTKEIAEILQEVADTYN 257
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 12/239 (5%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ +GH VTA D+AASG++P+Q+ + S ++ +PL+ F+ LP +KVI+VG S GL
Sbjct: 26 LERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGESCAGLN 85
Query: 62 VAQSMERFPNKISVAVFVSALKP----GPDLNISTLNQESFSRQGPLLDCKY-AYDDGPD 116
+A + +R+ +KI+ VF ++L P P + L ESF D +Y + +
Sbjct: 86 IAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKL-LESFPD---WRDTEYFTFTNITG 141
Query: 117 SPPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRR 176
TT G + L+ ++ ++ LA M+MRP LF + +++ K T + YG++ +
Sbjct: 142 ETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRPGSLF-QNVLAQRPKFTEKGYGSIPK 200
Query: 177 VYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLS-IAGNYS 234
VYI +++D + D W I PP +V +++ DH + ++K E+ AH+L +A Y+
Sbjct: 201 VYIWTDQDKIFLPDFQRWQIANYPPDKVYQVQGGDHKLQLTKTEEV-AHILQEVADAYA 258
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 12/239 (5%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ +GH VTA D+AASG++P+Q+ + S ++ +PL+ F+ LP +KVI+VG S GL
Sbjct: 26 LERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGESCAGLN 85
Query: 62 VAQSMERFPNKISVAVFVSALKP----GPDLNISTLNQESFSRQGPLLDCKY-AYDDGPD 116
+A + +R+ +KI+ VF ++L P P + L ESF D +Y + +
Sbjct: 86 IAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKL-LESFP---DWRDTEYFTFTNITG 141
Query: 117 SPPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRR 176
TT G + L+ ++ ++ LA M+MRP LF + +++ K T + YG++++
Sbjct: 142 ETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRPGSLF-QNVLAQRPKFTEKGYGSIKK 200
Query: 177 VYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLS-IAGNYS 234
VYI +++D + D W I P +V +++ DH + ++K E+ AH+L +A Y+
Sbjct: 201 VYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTKTEEV-AHILQEVADAYA 258
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 133/239 (55%), Gaps = 12/239 (5%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ +GH VTA D+AASG++P+Q+ + S ++ +PL+ F+ LP +KVI+VG S GL
Sbjct: 30 LERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGESXAGLN 89
Query: 62 VAQSMERFPNKISVAVFVSALKP----GPDLNISTLNQESFSRQGPLLDCKY-AYDDGPD 116
+A + +R+ +KI+ VF ++L P P + L ESF D +Y + +
Sbjct: 90 IAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKL-LESFP---DWRDTEYFTFTNITG 145
Query: 117 SPPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRR 176
TT G + L+ ++ ++ LA M+MR LF + +++ K T + YG++++
Sbjct: 146 ETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKGSLF-QNVLAQRPKFTEKGYGSIKK 204
Query: 177 VYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLS-IAGNYS 234
VYI +++D + D W I P +V +++ DH + ++K E+ AH+L +A Y+
Sbjct: 205 VYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTKTEEV-AHILQEVADAYA 262
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 133/239 (55%), Gaps = 12/239 (5%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ +GH VTA D+AASG++P+Q+ + S ++ +PL+ F+ LP +KVI+VG S GL
Sbjct: 30 LERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGESCAGLN 89
Query: 62 VAQSMERFPNKISVAVFVSALKP----GPDLNISTLNQESFSRQGPLLDCKY-AYDDGPD 116
+A + +R+ +KI+ VF ++L P P + L ESF D +Y + +
Sbjct: 90 IAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKL-LESFP---DARDTEYFTFTNITG 145
Query: 117 SPPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRR 176
TT G + L+ ++ ++ LA M+MR LF + +++ K T + YG++++
Sbjct: 146 ETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKGSLF-QNVLAQRPKFTEKGYGSIKK 204
Query: 177 VYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLS-IAGNYS 234
VYI +++D + D W I P +V +++ DH + ++K E+ AH+L +A Y+
Sbjct: 205 VYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTKTEEV-AHILQEVADAYA 262
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 133/239 (55%), Gaps = 12/239 (5%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ +GH VTA D+AASG++P+Q+ + S ++ +PL+ F+ LP +KVI+VG S GL
Sbjct: 30 LERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGESCAGLN 89
Query: 62 VAQSMERFPNKISVAVFVSALKP----GPDLNISTLNQESFSRQGPLLDCKY-AYDDGPD 116
+A + +R+ +KI+ VF ++L P P + L ESF D +Y + +
Sbjct: 90 IAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKL-LESFP---DWRDTEYFTFTNITG 145
Query: 117 SPPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRR 176
TT G + L+ ++ ++ LA M+MR LF + +++ K T + YG++++
Sbjct: 146 ETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKGSLF-QNVLAQRPKFTEKGYGSIKK 204
Query: 177 VYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLS-IAGNYS 234
VYI +++D + D W I P +V +++ DH + ++K E+ AH+L +A Y+
Sbjct: 205 VYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTKTEEV-AHILQEVADAYA 262
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 133/239 (55%), Gaps = 12/239 (5%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ +GH VTA D+AASG++P+Q+ + S ++ +PL+ F+ LP +KVI+VG + GL
Sbjct: 30 LERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFLEKLPQGEKVIIVGEACAGLN 89
Query: 62 VAQSMERFPNKISVAVFVSALKP----GPDLNISTLNQESFSRQGPLLDCKY-AYDDGPD 116
+A + +R+ +KI+ VF ++L P P + L ESF D +Y + +
Sbjct: 90 IAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKL-LESFP---DWRDTEYFTFTNITG 145
Query: 117 SPPTTFIFGPLYLKSTVYQLSPVEDWALATMLMRPLGLFSEEDMSKELKLTWERYGTVRR 176
TT G + L+ ++ ++ LA M+MR LF + +++ K T + YG++++
Sbjct: 146 ETITTMKLGFVLLRENLFTKCTDGEYELAKMVMRKGSLF-QNVLAQRPKFTEKGYGSIKK 204
Query: 177 VYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLS-IAGNYS 234
VYI +++D + D W I P +V +++ DH + ++K E+ AH+L +A Y+
Sbjct: 205 VYIWTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTKTEEV-AHILQEVADAYA 262
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 4 SSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVA 63
+ G+ V A D G QV + + + + +A L + + + VGHS GG V
Sbjct: 47 AHGYRVVAHDRRGHG-RSSQVWDGHDMDHYADDVAAVVAHLGI-QGAVHVGHSTGGGEVV 104
Query: 64 QSMERFP-NKISVAVFVSALKP 84
+ M R P +K++ AV ++A+ P
Sbjct: 105 RYMARHPEDKVAKAVLIAAVPP 126
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 7 HNVTAFDLAASGVEPQQ-VHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVAQS 65
HN+ D+ G+ P++ V N +++ + L+D + AL +DK +GHS GG AV
Sbjct: 43 HNIIQVDVRNHGLSPREPVMNYPAMA---QDLVDTLDALQIDKAT-FIGHSMGGKAVMAL 98
Query: 66 MERFPNKISVAVFV 79
P++I V +
Sbjct: 99 TALAPDRIDKLVAI 112
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 24 VHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGL---AVAQSMER---FPNKISVAV 77
+ +L ++D +K ++ L D+ +L GHS GG+ +AQ +ER FP AV
Sbjct: 58 IEDLEELTDLYKQELN----LRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQ----AV 109
Query: 78 FVSALKP 84
+SA++P
Sbjct: 110 IISAIQP 116
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 7 HNVTAFDLAASGVEPQQ-VHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVAQS 65
HN+ D+ G+ P++ V N +++ + L+D + A +DK +GHS GG AV
Sbjct: 43 HNIIQVDVRNHGLSPREPVMNYPAMA---QDLVDTLDAQQIDKAT-FIGHSMGGKAVMAL 98
Query: 66 MERFPNKISVAVFV 79
P++I V +
Sbjct: 99 TALAPDRIDKLVAI 112
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 12 FDLAASGVEPQQVHNLRSISDF--FKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERF 69
FD G + N+ +++ +++++ P + + LVGHS GG+ + +
Sbjct: 81 FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLY 140
Query: 70 PNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPP-TTFIFGPLY 128
P+ I V L P L L +G Y D PD P G Y
Sbjct: 141 PDLIKKVVL---LAPAATLKGDAL-------EGNTQGVTYNPDHIPDRLPFKDLTLGGFY 190
Query: 129 LKSTVYQLSPVEDWALATMLMRPLGLFSEED 159
L+ + Q P+ + ++ +P+ L D
Sbjct: 191 LR--IAQQLPI--YEVSAQFTKPVCLIHGTD 217
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 12 FDLAASGVEPQQVHNLRSISDF--FKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERF 69
FD G + N+ +++ +++++ P + + LVGH+ GG+ + +
Sbjct: 81 FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLY 140
Query: 70 PNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPP-TTFIFGPLY 128
P+ I V L P L L +G Y D PD P G Y
Sbjct: 141 PDLIKKVVL---LAPAATLKGDAL-------EGNTQGVTYNPDHIPDRLPFKDLTLGGFY 190
Query: 129 LKSTVYQLSPVEDWALATMLMRPLGLFSEED 159
L+ + Q P+ + ++ +P+ L D
Sbjct: 191 LR--IAQQLPI--YEVSAQFTKPVCLIHGTD 217
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 37 LIDFMAALPLDKKVILVGHSYGGLAV--AQSMERFPNKISVAVFVSALKPGPDLNISTLN 94
++D+ L + + GHS GGL+V A +MER K + + +A+ P
Sbjct: 89 VVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIP---------- 138
Query: 95 QESFSRQGPLLDCKYAYDDGPDS 117
+R G LL K+ ++ PD
Sbjct: 139 --EIARTGELLGLKFDPENIPDE 159
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 12 FDLAASGVEPQQVHNLRSISDF--FKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERF 69
FD G + N+ +++ +++++ P + + LVGH+ GG+ + +
Sbjct: 81 FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLY 140
Query: 70 PNKISVAVFVSALKPGPDLNISTLNQESFSRQGPLLDCKYAYDDGPDSPP-TTFIFGPLY 128
P+ I V L P L L +G Y D PD P G Y
Sbjct: 141 PDLIKKVVL---LAPAATLKGDAL-------EGNTQGVTYNPDHIPDRLPFKDLTLGGFY 190
Query: 129 LKSTVYQLSPVEDWALATMLMRPLGLFSEED 159
L+ + Q P+ + ++ +P+ L D
Sbjct: 191 LR--IAQQLPI--YEVSAQFTKPVCLIHGTD 217
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 31 SDFF----KPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNKISVAVFVSA 81
+DFF K +D M AL KKV L+G S GG+ + ++P+ I V A
Sbjct: 74 ADFFERDAKDAVDLMKALKF-KKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGA 127
>pdb|3BDV|A Chain A, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
pdb|3BDV|B Chain B, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
Length = 191
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 48 KKVILVGHSYGGLAVAQSMERFPNKISVAVFVSALKP 84
+ VIL+GHS+G LA +++ I+ V+ +P
Sbjct: 74 QPVILIGHSFGALAACHVVQQGQEGIAGVXLVAPAEP 110
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 2 IKSSGHNVTAFDLAASGV--EPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGG 59
+ S G+ AFD G +P ++ + +D LI+ + K+V LVG S GG
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL----KEVTLVGFSMGG 97
Query: 60 LAVAQSMERFPN-KISVAVFVSALKP 84
VA+ + R + +++ V + A+ P
Sbjct: 98 GDVARYIARHGSARVAGLVLLGAVTP 123
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 2 IKSSGHNVTAFDLAASGV--EPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGG 59
+ S G+ AFD G +P ++ + +D LI+ + K+V LVG S GG
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL----KEVTLVGFSMGG 97
Query: 60 LAVAQSMERFPN-KISVAVFVSALKP 84
VA+ + R + +++ V + A+ P
Sbjct: 98 GDVARYIARHGSARVAGLVLLGAVTP 123
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 2 IKSSGHNVTAFDLAASGV--EPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGG 59
+ S G+ AFD G +P ++ + +D LI+ + K+V LVG S GG
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL----KEVTLVGFSMGG 97
Query: 60 LAVAQSMERFPN-KISVAVFVSALKP 84
VA+ + R + +++ V + A+ P
Sbjct: 98 GDVARYIARHGSARVAGLVLLGAVTP 123
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 2 IKSSGHNVTAFDLAASGV--EPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGG 59
+ S G+ AFD G +P ++ + +D LI+ + K+V LVG S GG
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL----KEVTLVGFSMGG 97
Query: 60 LAVAQSMERFPN-KISVAVFVSALKP 84
VA+ + R + +++ V + A+ P
Sbjct: 98 GDVARYIARHGSARVAGLVLLGAVTP 123
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 2 IKSSGHNVTAFDLAASGV--EPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGG 59
+ S G+ AFD G +P ++ + +D LI+ + K+V LVG S GG
Sbjct: 42 LSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL----KEVTLVGFSMGG 97
Query: 60 LAVAQSMERFPN-KISVAVFVSALKP 84
VA+ + R + +++ V + A+ P
Sbjct: 98 GDVARYIARHGSARVAGLVLLGAVTP 123
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 13 DLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVG 54
D A EP+QVH + + L+D + +LPL KK + G
Sbjct: 374 DEEAVDREPRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTG 415
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 31 SDFF----KPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNKISVAVFVSA 81
+DFF K +D M AL KKV L+G S GG+ + ++P+ I V A
Sbjct: 74 ADFFERDAKDAVDLMKALKF-KKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGA 127
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 38 IDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNKISVAVFVSALKPGPD 87
++ + AL KV L+GHS+GG + P+ I+ A V A G D
Sbjct: 64 VEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKGSD 113
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 34 FKPL---IDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNKISVAVFVSALKPGPDLNI 90
+ PL +D+M LP+ K V LV GG V + P+ S + SAL P +I
Sbjct: 85 YNPLGRKVDWMVRLPVSKHVYLVKDP-GGKIVPSDVVTIPSSDSQELLFSALVPAVGFSI 143
Query: 91 STLNQ 95
+++Q
Sbjct: 144 YSVSQ 148
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 13 DLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNK 72
DL G + + + D +K L + L L KK+I VGH +G ++
Sbjct: 76 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 135
Query: 73 ISVAVFVSAL 82
I V + ++
Sbjct: 136 IKAIVHMESV 145
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 13 DLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNK 72
DL G + + + D +K L + L L KK+I VGH +G ++
Sbjct: 76 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 135
Query: 73 ISVAVFVSAL 82
I V + ++
Sbjct: 136 IKAIVHMESV 145
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 173 TVRRVYIISEKDLVTEKDLAMWMIKRNPPHQVEEIKDSDHMVMMSKPLELWAHLLSIAGN 232
+++++++ K L+ + ++ K H+ EE+K+ + +V KP L + +I G
Sbjct: 338 AIKKIWLVDSKGLIVKGRASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIG-VAAIGGA 396
Query: 233 YS 234
+S
Sbjct: 397 FS 398
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 13 DLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNK 72
DL G + + + D +K L + L L KK+I VGH +G ++
Sbjct: 77 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 136
Query: 73 ISVAVFVSAL 82
I V + ++
Sbjct: 137 IKAIVHMESV 146
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 13 DLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNK 72
DL G + + + D +K L + L L KK+I VGH +G ++
Sbjct: 77 DLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDR 136
Query: 73 ISVAVFVSAL 82
I V + ++
Sbjct: 137 IKAIVHMESV 146
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 2 IKSSGHNVTAFDLAASG------VEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGH 55
I + + V A D+ G +E Q +R + DF K A+ D KV +VG+
Sbjct: 61 ILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIK-------AMNFDGKVSIVGN 113
Query: 56 SYGG 59
S GG
Sbjct: 114 SMGG 117
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 30 ISDFFKPLIDFMAALPLDKKVILVGHSYG------GLAVAQSMERFPNKISVAV-FVSAL 82
I+ F P +++ LPL K + + GH YG G + ++ E P ++ + ++ A
Sbjct: 251 IAPFLYPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEELIFHINYLGAD 310
Query: 83 KPGPDLNIS 91
+P LN S
Sbjct: 311 QPTFTLNFS 319
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 31 SDFF----KPLIDFMAALPLDKKVILVGHSYGGLAVAQSMERFPNKISVAVFVSA 81
+DFF K +D M AL KKV L+G + GG+ + ++P+ I V A
Sbjct: 74 ADFFERDAKDAVDLMKALKF-KKVSLLGWADGGITALIAAAKYPSYIHKMVIWGA 127
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 2 IKSSGHNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGGLA 61
++ GH V F + S +V + + F + L+ A KKV +GHS G LA
Sbjct: 52 LRQDGHQV--FTASLSAFNSNEVRG-KQLWQFVQTLLQETQA----KKVNFIGHSQGPLA 104
Query: 62 VAQSMERFPNKISVAVFVSALKPGPDL 88
+P+ ++ ++ + G ++
Sbjct: 105 CRYVAANYPDSVASVTSINGVNHGSEI 131
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 49 KVILVGHSYGGLAVAQSMERFPNKISVAVFVSALKPG 85
KV + G S GG+ +++E P + VF S + PG
Sbjct: 94 KVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPG 130
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 28 RSISDFFKPLIDFMAALP--LDKKVILVGHSYGGLAVAQSMERFPNKISVAVFVSA 81
++++DF + + +P ++ VI +G SYGG+ A ++P+ + A+ SA
Sbjct: 104 QALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 7 HNVTAFDLAASGVEPQQVHNLRSISDFFKPLIDFMAALPLDKKVILVGHSYGG-LAVAQS 65
+ V A D+ G + + S + +I M AL ++K I VG+S+GG LA+A +
Sbjct: 55 YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIGIMDALEIEKAHI-VGNSFGGGLAIATA 113
Query: 66 MERFPNKISVAVFVSALKPGPD----LNISTLNQESFSRQGPLLDCKYAYD 112
+ R+ ++ V + A+ D LN S LLD +AYD
Sbjct: 114 L-RYSERVDRMVLMGAVGTRFDVTEGLNAVWGYTPSIENMRNLLDI-FAYD 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,120,165
Number of Sequences: 62578
Number of extensions: 285192
Number of successful extensions: 754
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 91
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)