BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026719
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6T6K9|XYLA_FERGO Xylose isomerase OS=Fervidobacterium gondwanense GN=xylA PE=3 SV=1
Length = 433
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 67 EAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSH 126
E F H R+ A LR+S + D E I+ ++ + +L + A L FSH
Sbjct: 92 EYFTFHDRDLAHEGLTLRESNKILDKVVEKIKEYMKSSNVKLLWGTANL--------FSH 143
Query: 127 LKFELGQ--------LRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNM 168
++ G +A S+ + M D EL L L G E YDN+
Sbjct: 144 PRYAQGAATSPNPLVFSYAASQVKKMLDVTKELGGLGYVLWGGREGYDNL 193
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 69 FEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ-EFFSHL 127
F+ H +A AL SR LP + ++ F DTE E + R++ NQ FS +
Sbjct: 142 FQTHTEAQAAIN-ALHGSRTLPGASSSLVVKFADTEK---ERGLRRMQQVANQLGMFSPI 197
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
+ G + TQ + D+L++ +A AL+ AY N A + + +
Sbjct: 198 ALQFGAYS---AYTQAVSDQLMQQQA---ALVAAHSAYLNPMATMAAVQMQQMATINPNG 251
Query: 188 VKAT 191
+ AT
Sbjct: 252 IIAT 255
>sp|Q8AVM5|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis
GN=atp6v0a1 PE=2 SV=1
Length = 831
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 45 AQTGHIARLEFKRRLEKDAEA-REAFEQHVR--EEAERRRALRQSRV------LPDTAEE 95
++ G + +++F R L D + F VR EE +R+ + V + DT E
Sbjct: 27 SELGELGKVQF-RDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGEN 85
Query: 96 MIEYF----LDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIEL 151
F +D EA + EI NQE EL +L+F + KTQ D + +
Sbjct: 86 PEVPFPRDIIDLEANFEKIEIELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADP 145
Query: 152 EALQKA--LLEGTE 163
+ L+++ LLE +E
Sbjct: 146 DLLEESSTLLEPSE 159
>sp|Q2J7E7|MDH_FRASC Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1
Length = 329
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 PEGILGS-AQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALR 84
PEG++ S T R E + LE DA +RE + VRE AE R A+R
Sbjct: 277 PEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEEREAVR 324
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 71 QHVREEAERRRALRQSRVLPDTAEEMIEYFLDT--EAQELEFEIARLR-PRLNQEFFSHL 127
+ ++ + E RA Q + DTA+ + DT + +EL+ + +L+ NQ S
Sbjct: 1698 EALKNKTEMNRA--QGKEAKDTADAALNSANDTGKDLEELKEQFEKLKLNSTNQNVSSEA 1755
Query: 128 KFELGQLRF-AVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKS---LTKIL 183
L + A + + +ED++ E+E L++ +L E D M+ +L +K L K +
Sbjct: 1756 NERLKNITMEAENLAKHVEDKMKEIEDLEEKILLSNERKDEMRKELEALQKEADDLKKFI 1815
Query: 184 TSKDVKATVC 193
K + +C
Sbjct: 1816 VDKVQRYNLC 1825
>sp|Q5R422|VPP1_PONAB V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii
GN=ATP6V0A1 PE=2 SV=1
Length = 837
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 24/138 (17%)
Query: 45 AQTGHIARLEFKRRLEKDAEA-REAFEQHVR--EEAERR-----RALRQSRV-LPDTAE- 94
++ G + +++F R L D + F VR EE +R+ + +R++ + + DT E
Sbjct: 27 SELGELGKVQF-RDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGEN 85
Query: 95 -------EMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDR 147
+MI+ L+ +++E E+ + NQE EL +L+F + KTQ D
Sbjct: 86 PEVPFPRDMID--LEANFEKIENELKEINT--NQEALKRNFLELTELKFILRKTQQFFDE 141
Query: 148 LIELEAL--QKALLEGTE 163
+ + + L +LLE +E
Sbjct: 142 MADPDLLGESSSLLEPSE 159
>sp|P16952|SSP5_STRGN Agglutinin receptor OS=Streptococcus gordonii GN=ssp5 PE=1 SV=2
Length = 1500
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 35 QWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAE 94
Q D + L + QT E R + +AEA+EA+E+ V+E + AL+
Sbjct: 224 QQDYQNKLSAYQT------ELARVQKANAEAKEAYEKAVKENTAKNEALKVENEAIKQRN 277
Query: 95 EMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEAL 154
E + + ++ E ++A ++ + N++ + Q + A +T EL +
Sbjct: 278 ETAKATYEAAMKQYEADLAAIK-KANEDNDADY-----QAKLAAYQT--------ELARV 323
Query: 155 QKALLEGTEAYD 166
QKA E EAYD
Sbjct: 324 QKANAEAKEAYD 335
>sp|Q0RE66|MDH_FRAAA Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3
SV=1
Length = 329
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 PEGILGS-AQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALR 84
PEG++ S T + E + LE DA +RE + VRE AE R A+R
Sbjct: 277 PEGLISSFPVTAAGGKFEIVQGLELDAFSREKIDASVRELAEEREAVR 324
>sp|Q96CN4|EVI5L_HUMAN EVI5-like protein OS=Homo sapiens GN=EVI5L PE=1 SV=1
Length = 794
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 117 PRLNQEFFSHLKFELGQLRFAVSKT----QDMEDRLIELEALQKAL 158
PRL ++F SHL+ EL Q R ++T ++M+D+++++E +L
Sbjct: 450 PRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSL 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,898,625
Number of Sequences: 539616
Number of extensions: 2581086
Number of successful extensions: 12501
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 12250
Number of HSP's gapped (non-prelim): 452
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)