Query 026719
Match_columns 234
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 11:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 78.8 18 0.0004 37.4 10.3 65 54-119 492-561 (697)
2 PF08031 BBE: Berberine and be 67.9 2.2 4.7E-05 29.2 0.5 12 36-47 34-45 (47)
3 KOG4807 F-actin binding protei 45.8 1.4E+02 0.0031 30.3 8.9 81 36-116 315-406 (593)
4 PF11902 DUF3422: Protein of u 39.3 3.9E+02 0.0085 26.4 12.9 155 36-201 167-362 (420)
5 PF07067 DUF1340: Protein of u 37.6 2.1E+02 0.0044 26.4 8.0 50 86-135 63-127 (236)
6 KOG2027 Spindle pole body prot 37.1 4.2E+02 0.009 26.1 13.2 133 52-207 21-161 (388)
7 TIGR00985 3a0801s04tom mitocho 36.0 1.4E+02 0.003 25.6 6.4 18 85-102 75-92 (148)
8 KOG2580 Mitochondrial import i 33.9 72 0.0016 32.1 4.9 56 99-162 295-352 (459)
9 PF01984 dsDNA_bind: Double-st 30.1 84 0.0018 25.3 3.9 42 174-215 45-92 (107)
10 PF11123 DNA_Packaging_2: DNA 29.8 1.1E+02 0.0024 24.3 4.4 45 118-169 28-72 (82)
11 PF01858 RB_A: Retinoblastoma- 27.5 3.6E+02 0.0077 23.5 7.6 104 94-222 26-129 (194)
12 PF09805 Nop25: Nucleolar prot 25.7 2E+02 0.0043 23.8 5.5 36 28-74 7-47 (137)
13 KOG3431 Apoptosis-related prot 24.9 2.3E+02 0.0051 24.2 5.8 42 174-215 53-100 (129)
14 PRK04239 hypothetical protein; 24.8 4E+02 0.0086 22.0 8.7 42 174-215 50-97 (110)
15 PHA03187 UL14 tegument protein 24.3 6.4E+02 0.014 24.5 9.1 41 102-150 82-122 (322)
16 COG5452 Uncharacterized conser 23.4 3.4E+02 0.0073 24.3 6.7 70 88-170 38-120 (180)
17 PF09862 DUF2089: Protein of u 22.3 85 0.0018 25.9 2.7 33 174-207 65-105 (113)
18 KOG3054 Uncharacterized conser 21.7 2.2E+02 0.0048 27.2 5.5 25 37-61 83-110 (299)
19 COG3877 Uncharacterized protei 21.2 92 0.002 26.2 2.7 59 148-207 36-113 (122)
20 PF04388 Hamartin: Hamartin pr 20.6 2.7E+02 0.0058 28.8 6.4 57 92-158 40-96 (668)
21 PF12685 SpoIIIAH: SpoIIIAH-li 20.4 2.8E+02 0.0061 23.8 5.6 26 121-158 85-110 (196)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.77 E-value=18 Score=37.38 Aligned_cols=65 Identities=28% Similarity=0.484 Sum_probs=43.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--hhcCCCC---CCHHHHHHHHhcCchhhHHHHHHhhCCCC
Q 026719 54 EFKRRLEKDAEAREAFEQHVREEAERRRAL--RQSRVLP---DTAEEMIEYFLDTEAQELEFEIARLRPRL 119 (234)
Q Consensus 54 ~~~r~~e~d~e~~ea~~~~~~~e~~~r~~~--r~aR~~P---~~h~~LIE~fl~Tea~Eie~eIAR~Rp~l 119 (234)
..-|||..+..+|..+|.|..+|+.+|+++ ..+|.++ .+-.+-=|... .-.++||-|+-++|-+|
T Consensus 492 ~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r-~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 492 QLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCR-QRRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999887665 3344421 22223333333 33458999988877665
No 2
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=67.86 E-value=2.2 Score=29.21 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.4
Q ss_pred cCCCCcCCCCcc
Q 026719 36 WDPEGILGSAQT 47 (234)
Q Consensus 36 ~dPeg~~~~p~~ 47 (234)
|||+|+|..||+
T Consensus 34 yDP~n~F~~~q~ 45 (47)
T PF08031_consen 34 YDPDNVFRFPQS 45 (47)
T ss_dssp H-TT-TS-STTS
T ss_pred hCccceeCCCCC
Confidence 999999987764
No 3
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=45.77 E-value=1.4e+02 Score=30.30 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=59.6
Q ss_pred cCCCCcCCCCccchhh---------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH--HHHHHhcCc
Q 026719 36 WDPEGILGSAQTGHIA---------RLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEE--MIEYFLDTE 104 (234)
Q Consensus 36 ~dPeg~~~~p~~g~i~---------rr~~~r~~e~d~e~~ea~~~~~~~e~~~r~~~r~aR~~P~~h~~--LIE~fl~Te 104 (234)
-||+|-+.....|||- .|-|.-+=+.--..-|.++||++.|-++.+...+.=.--+|..- -||-+...-
T Consensus 315 e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAh 394 (593)
T KOG4807|consen 315 EAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAH 394 (593)
T ss_pred cCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 5788877655556653 45667777777777788999999888887776654444455443 478889999
Q ss_pred hhhHHHHHHhhC
Q 026719 105 AQELEFEIARLR 116 (234)
Q Consensus 105 a~Eie~eIAR~R 116 (234)
-+||+.|+.+-+
T Consensus 395 rEEmeRELeKsq 406 (593)
T KOG4807|consen 395 REEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHhhh
Confidence 999999998876
No 4
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=39.29 E-value=3.9e+02 Score=26.38 Aligned_cols=155 Identities=25% Similarity=0.302 Sum_probs=90.8
Q ss_pred cCCCCcCC------CCccchhhHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 026719 36 WDPEGILG------SAQTGHIARLEFKRRLEKD----------AEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEY 99 (234)
Q Consensus 36 ~dPeg~~~------~p~~g~i~rr~~~r~~e~d----------~e~~ea~~~~~~~e~~~r~~~r~aR~~P~~h~~LIE~ 99 (234)
-||+|.-. ..+...+.| ..+|-+|-+ +.+++..-+=.+.|.+=-.--.+-....++.++|++-
T Consensus 167 ~~~dGf~R~lv~~~~l~~~q~GR-lvQRLlEIEtYR~mALL~LP~Ar~~~~~L~~~E~~L~~l~~~~~~~~~~~~~LL~~ 245 (420)
T PF11902_consen 167 LDEDGFSRFLVLDRGLSPRQAGR-LVQRLLEIETYRMMALLGLPVARELSPELSELEQRLAALTQRMASSEDTDDELLDE 245 (420)
T ss_pred CCCCCCeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 47777432 222223333 247777766 6777776555554444332222333336777789998
Q ss_pred HhcCchhhHHHHHHhhCCCC--cHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHH----HH---HHhhhhhH
Q 026719 100 FLDTEAQELEFEIARLRPRL--NQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLE----GT---EAYDNMQA 170 (234)
Q Consensus 100 fl~Tea~Eie~eIAR~Rp~l--T~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~~e----av---EayDka~~ 170 (234)
+-.--+ ++|..+++++-+| |..++.=....|..++ |++...+.+|..-+.- |+ ++..+=+.
T Consensus 246 Lt~LAa-~vE~~~a~t~~RF~As~AY~~iV~~RL~eLr---------E~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~ 315 (420)
T PF11902_consen 246 LTRLAA-EVEALAARTSYRFSASRAYYEIVEQRLAELR---------EERIPGYQTLSEFLERRLTPAMRTCEAVERRQE 315 (420)
T ss_pred HHHHHH-HHHHHHHHhcccchhhHHHHHHHHHHHHHhc---------ccccCCCCcHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777666 9999999999998 5788888888888887 4555555555543322 22 22222222
Q ss_pred HHH----------------HHHHHHHHHhcCcchhhhhHHHHHHHHH
Q 026719 171 DLI----------------TARKSLTKILTSKDVKATVCLTLLELVE 201 (234)
Q Consensus 171 ~l~----------------~Ak~rl~kILtSkd~kaa~c~kIlemae 201 (234)
++. .-+..=.++|.|=|..+.+-.+|-+.||
T Consensus 316 ~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa~lQLrLQqtVE 362 (420)
T PF11902_consen 316 DLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRARLQLRLQQTVE 362 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221 1111225777777777776666666665
No 5
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=37.62 E-value=2.1e+02 Score=26.45 Aligned_cols=50 Identities=34% Similarity=0.580 Sum_probs=43.5
Q ss_pred cCCCCCCHHHHHHHHhcCchhhHHHHH--------HhhCCC-------CcHHHHHHHHHHhhhhh
Q 026719 86 SRVLPDTAEEMIEYFLDTEAQELEFEI--------ARLRPR-------LNQEFFSHLKFELGQLR 135 (234)
Q Consensus 86 aR~~P~~h~~LIE~fl~Tea~Eie~eI--------AR~Rp~-------lT~eFF~hL~~~i~~~r 135 (234)
++.-|-|-+++-||+-|.=+++|+.=. ..|||+ ||.+.|.+.+.+|+++|
T Consensus 63 sklSp~Tl~dmreyitdgL~NDlq~yL~~~y~~~~~~~rpd~dk~NAGL~eeLfkq~~~Ei~~Lr 127 (236)
T PF07067_consen 63 SKLSPATLDDMREYITDGLANDLQEYLSKHYTSRSVKCRPDTDKTNAGLPEELFKQYREEIEELR 127 (236)
T ss_pred hhCChhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 677899999999999999999987654 357887 68899999999999998
No 6
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=37.09 E-value=4.2e+02 Score=26.06 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=76.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhcCchhhHHHHHHhhCCCCcHHHHHHHHHHh
Q 026719 52 RLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFEL 131 (234)
Q Consensus 52 rr~~~r~~e~d~e~~ea~~~~~~~e~~~r~~~r~aR~~P~~h~~LIE~fl~Tea~Eie~eIAR~Rp~lT~eFF~hL~~~i 131 (234)
|+++...|..-.+.++-+.-++-.+-++.-+ ..++||.|-+.=..-+-.+ ..++.+..++=.-+.++|
T Consensus 21 RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~----------a~e~le~fCelll~R~~~i--~~~~~cp~~l~EAVsSli 88 (388)
T KOG2027|consen 21 RRDIADLLKSGQDERARIRVEHLIREENLLE----------AYEILELFCELLLARLSLI--EKQKECPDDLKEAVSSLI 88 (388)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHH--hhcccCCHHHHHHHHHHH
Confidence 5555555555555444443333333333222 3677777765433222221 224788888877777666
Q ss_pred hhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHHhcCc-chhhhhHHHHHHHHHhc
Q 026719 132 GQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITA-------RKSLTKILTSK-DVKATVCLTLLELVEQN 203 (234)
Q Consensus 132 ~~~rfa~~~~~~~edrl~ELeaL~k~~~eavEayDka~~~l~~A-------k~rl~kILtSk-d~kaa~c~kIlemae~n 203 (234)
||+.|= .|+.-|+..=.-.+.-|.+-+....-. -.+|.+.|+.. -.+.++++-+.|.|+..
T Consensus 89 ----fAA~R~-------~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey 157 (388)
T KOG2027|consen 89 ----FAAPRL-------SEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKLSVEAPPKELKEKYLKEIAKEY 157 (388)
T ss_pred ----HHhccc-------cccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHh
Confidence 888754 344444444445677777776655422 45688888764 24444688899999998
Q ss_pred hhhH
Q 026719 204 KINR 207 (234)
Q Consensus 204 ELD~ 207 (234)
.++-
T Consensus 158 ~v~~ 161 (388)
T KOG2027|consen 158 NVNW 161 (388)
T ss_pred CCCc
Confidence 8764
No 7
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.95 E-value=1.4e+02 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=13.0
Q ss_pred hcCCCCCCHHHHHHHHhc
Q 026719 85 QSRVLPDTAEEMIEYFLD 102 (234)
Q Consensus 85 ~aR~~P~~h~~LIE~fl~ 102 (234)
..-+.|.|++++=.||++
T Consensus 75 ~~~p~p~d~~e~E~~Fl~ 92 (148)
T TIGR00985 75 AKAPDPTDPSEKEAFFLQ 92 (148)
T ss_pred hcCCCCCCHHHHHHHHHH
Confidence 334567799998888875
No 8
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.92 E-value=72 Score=32.06 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHhcCchhhHHHHHHhhCCCCc-HHHHHHHHHHhhh-hhhhhccCCchHHHHHHHHHHHHHHHHHH
Q 026719 99 YFLDTEAQELEFEIARLRPRLN-QEFFSHLKFELGQ-LRFAVSKTQDMEDRLIELEALQKALLEGT 162 (234)
Q Consensus 99 ~fl~Tea~Eie~eIAR~Rp~lT-~eFF~hL~~~i~~-~rfa~~~~~~~edrl~ELeaL~k~~~eav 162 (234)
+|-.|++-+.=.||.+.=|-|+ ++|..|+..-|-- .=.|. -...|+.|.+||.++.
T Consensus 295 ~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAy--------vkGD~evLK~wcsea~ 352 (459)
T KOG2580|consen 295 LFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAY--------VKGDLEVLKKWCSEAP 352 (459)
T ss_pred cchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHH--------HhccHHHHHHHHhhhH
Confidence 3457777788899999999995 6899999886633 11122 3346999999999986
No 9
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=30.08 E-value=84 Score=25.31 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcC-cchhhhhHHHHHHHHHhchhh-----HHHHHHHHH
Q 026719 174 TARKSLTKILTS-KDVKATVCLTLLELVEQNKIN-----RSLLTLLDE 215 (234)
Q Consensus 174 ~Ak~rl~kILtS-kd~kaa~c~kIlemae~nELD-----~sLm~LL~~ 215 (234)
.|++||..|=-. |++-.+|-..|+.||..|.|. ..|+.||.+
T Consensus 45 eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kI~d~~L~~iL~~ 92 (107)
T PF01984_consen 45 EARERLNRIKLVKPEKARQVENQLIQLAQSGQLRGKIDDEQLKEILEQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 789999988655 677777788899999999984 678888875
No 10
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.80 E-value=1.1e+02 Score=24.30 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=37.0
Q ss_pred CCcHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026719 118 RLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQ 169 (234)
Q Consensus 118 ~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~~eavEayDka~ 169 (234)
+=||-.++.+...+.-.+|.++|-.-+++-+.+|++ |.++|+++.
T Consensus 28 kRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~-------aL~ey~~~~ 72 (82)
T PF11123_consen 28 KRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAA-------ALEEYKKMV 72 (82)
T ss_pred hcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHH-------HHHHHHHHc
Confidence 347889999999999999999998888888887765 677887753
No 11
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=27.48 E-value=3.6e+02 Score=23.48 Aligned_cols=104 Identities=25% Similarity=0.256 Sum_probs=59.4
Q ss_pred HHHHHHHhcCchhhHHHHHHhhCCCCcHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 026719 94 EEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (234)
Q Consensus 94 ~~LIE~fl~Tea~Eie~eIAR~Rp~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~~eavEayDka~~~l~ 173 (234)
+.|.++|.+... +....|..+-..+...|+.+.....+.. ...+...++|..+.+.|+=.+++.+ +
T Consensus 26 ~~L~~~~~~c~~-~p~~~i~~rv~~l~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~LYY~~LE~I----------l 91 (194)
T PF01858_consen 26 EELLRIFKSCSR-DPTESILKRVKQLLEKFCQKYTEAEGEQ---SSNSDFAEQRFNLAEKLYYKVLEKI----------L 91 (194)
T ss_dssp HHHHHHHHTSSS---HHHHHHHHHHHHHHHHHHHHHHHSGG-----GHHHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHhccccccc---cccchHHHHHHHHHHHHHHHHHHHH----------H
Confidence 788999877666 3444555556677788888877654432 0111234567777777766666544 4
Q ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHhchhhHHHHHHHHHHHHHhhh
Q 026719 174 TARKSLTKILTSKDVKATVCLTLLELVEQNKINRSLLTLLDENIANAQK 222 (234)
Q Consensus 174 ~Ak~rl~kILtSkd~kaa~c~kIlemae~nELD~sLm~LL~~NiasAke 222 (234)
.++.+- +...| +-.|..++.+.+||++-=-+=...+..
T Consensus 92 ~~E~~r---~~~~~--------ls~LL~~~~FhrsL~ACclEiVl~sy~ 129 (194)
T PF01858_consen 92 KAEEKR---LPTND--------LSSLLSQEIFHRSLLACCLEIVLFSYK 129 (194)
T ss_dssp HHHHHH---HSCSH--------HHHHHT-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcc---ccHhH--------HHHHhhhhHHHHHHHHHHHHHHHHHcC
Confidence 444431 12222 446677788888888865554444443
No 12
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=25.67 E-value=2e+02 Score=23.83 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=26.8
Q ss_pred cceeeeeccCCCCcCCCCccchhhHHHH-----HHHhhhhHHHHHHHHHHHH
Q 026719 28 KFRISCVQWDPEGILGSAQTGHIARLEF-----KRRLEKDAEAREAFEQHVR 74 (234)
Q Consensus 28 ~~~i~~i~~dPeg~~~~p~~g~i~rr~~-----~r~~e~d~e~~ea~~~~~~ 74 (234)
+.++..|.+|+.- |++| +|++++-+.|.+.++++.+
T Consensus 7 k~~~~ev~FD~~~-----------R~eyLTGFhKRK~~Rrk~Aqe~~~~k~r 47 (137)
T PF09805_consen 7 KKKKEEVVFDEKA-----------RREYLTGFHKRKKQRRKKAQEQAEEKER 47 (137)
T ss_pred cCCCceEEcChHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899874 5543 6778888888888887777
No 13
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.94 E-value=2.3e+02 Score=24.19 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcC-cchhhhhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026719 174 TARKSLTKILTS-KDVKATVCLTLLELVEQNKI-----NRSLLTLLDE 215 (234)
Q Consensus 174 ~Ak~rl~kILtS-kd~kaa~c~kIlemae~nEL-----D~sLm~LL~~ 215 (234)
.|++||..|--+ |++-.+|-.-|+.|+..|+| |.-|+.||.+
T Consensus 53 qAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kise~~lisiLe~ 100 (129)
T KOG3431|consen 53 QARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKISEAELISILEK 100 (129)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCccccccHHHHHHHHHH
Confidence 899999998666 57777778889999999998 6778888865
No 14
>PRK04239 hypothetical protein; Provisional
Probab=24.75 E-value=4e+02 Score=21.97 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcC-cchhhhhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026719 174 TARKSLTKILTS-KDVKATVCLTLLELVEQNKI-----NRSLLTLLDE 215 (234)
Q Consensus 174 ~Ak~rl~kILtS-kd~kaa~c~kIlemae~nEL-----D~sLm~LL~~ 215 (234)
.|++||..|--. |++-.+|-+-|+.||-+|.| |..|..||++
T Consensus 50 eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e~~L~~lL~~ 97 (110)
T PRK04239 50 EARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDDEQLKEILEQ 97 (110)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 789999999665 57666677779999999998 6788888876
No 15
>PHA03187 UL14 tegument protein; Provisional
Probab=24.32 E-value=6.4e+02 Score=24.49 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=33.9
Q ss_pred cCchhhHHHHHHhhCCCCcHHHHHHHHHHhhhhhhhhccCCchHHHHHH
Q 026719 102 DTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIE 150 (234)
Q Consensus 102 ~Tea~Eie~eIAR~Rp~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~E 150 (234)
+..+ ++.-+...+|.-|.++|-.+|...-+.+- +.||+|.+
T Consensus 82 EeQ~-a~r~iL~~nRRfL~PdFid~lD~~ED~L~-------ekEd~Led 122 (322)
T PHA03187 82 EAQA-AVGEILDRHRRFLHPDFIDKFDSREDSIV-------EREERLGD 122 (322)
T ss_pred HHHH-HHHHHHHHhhhhcChHHHHHHHHHHHHhh-------hhHHHHHH
Confidence 3344 78888999999999999999999888885 77888773
No 16
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=23.37 E-value=3.4e+02 Score=24.33 Aligned_cols=70 Identities=29% Similarity=0.365 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHH--------hcC-----chhhHHHHHHhhCCCCcHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHH
Q 026719 88 VLPDTAEEMIEYF--------LDT-----EAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEAL 154 (234)
Q Consensus 88 ~~P~~h~~LIE~f--------l~T-----ea~Eie~eIAR~Rp~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL 154 (234)
.||||+.+=.|+| ..+ -+|||--||+ ++||.-+.-.+-.+- --++....|.. .|
T Consensus 38 ~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~-------Daff~dvDhs~RElG---igD~gVpKrMK---Kl 104 (180)
T COG5452 38 GVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIV-------DAFFKDVDHSLRELG---IGDQGVPKRMK---KL 104 (180)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-------HHHHhhhhHHHHHhC---CCcccchHHHH---HH
Confidence 6899998866654 211 2467777776 699998887664442 22445566644 45
Q ss_pred HHHHHHHHHHhhhhhH
Q 026719 155 QKALLEGTEAYDNMQA 170 (234)
Q Consensus 155 ~k~~~eavEayDka~~ 170 (234)
....-.=+++||.+-.
T Consensus 105 AgmFYGRl~aY~aAld 120 (180)
T COG5452 105 AGMFYGRLEAYDAALD 120 (180)
T ss_pred HHHHHhHHHHHHHHhc
Confidence 5555566799998854
No 17
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.31 E-value=85 Score=25.87 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCcch--------hhhhHHHHHHHHHhchhhH
Q 026719 174 TARKSLTKILTSKDV--------KATVCLTLLELVEQNKINR 207 (234)
Q Consensus 174 ~Ak~rl~kILtSkd~--------kaa~c~kIlemae~nELD~ 207 (234)
+++.||.+|+..-.+ ... ...|++++++|||+.
T Consensus 65 TvR~rLd~ii~~lg~~~~~~~~~~~~-~~~IL~~L~~GeIs~ 105 (113)
T PF09862_consen 65 TVRNRLDKIIEKLGYEEDEEEEEEDE-RKEILDKLEKGEISV 105 (113)
T ss_pred HHHHHHHHHHHHhCCCCCcccccchh-HHHHHHHHHcCCCCH
Confidence 778899888865222 222 556999999999975
No 18
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=2.2e+02 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=17.0
Q ss_pred CCCCcCC---CCccchhhHHHHHHHhhh
Q 026719 37 DPEGILG---SAQTGHIARLEFKRRLEK 61 (234)
Q Consensus 37 dPeg~~~---~p~~g~i~rr~~~r~~e~ 61 (234)
|-..+.| .|+.||+.-++=+|+..+
T Consensus 83 e~~~~dg~ee~~e~~~~~~kigkkK~aK 110 (299)
T KOG3054|consen 83 EEGSGDGDEEEPEAGGLQAKIGKKKEAK 110 (299)
T ss_pred cccccccccccccccchhhhhhhHHHHH
Confidence 3344555 699999988887766554
No 19
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=92 Score=26.24 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH-----------HHHHHHHHHhcC-------c-chhhhhHHHHHHHHHhchhhH
Q 026719 148 LIELEALQKALLEGTEAYDNMQADLI-----------TARKSLTKILTS-------K-DVKATVCLTLLELVEQNKINR 207 (234)
Q Consensus 148 l~ELeaL~k~~~eavEayDka~~~l~-----------~Ak~rl~kILtS-------k-d~kaa~c~kIlemae~nELD~ 207 (234)
..+.+.|-+.=+++|+.|=+.+.++- +-+-+|.+||.+ + +...- -++|++++++|||-.
T Consensus 36 ~s~F~~Lt~d~LeFv~lf~r~RGnlKEvEr~lg~sYptvR~kld~vlramgy~p~~e~~~~i~-~~~i~~qle~Gei~p 113 (122)
T COG3877 36 MSKFEYLTSDQLEFVELFLRCRGNLKEVERELGISYPTVRTKLDEVLRAMGYNPDSENSVNIG-KKKIIDQLEKGEISP 113 (122)
T ss_pred cccccccCHhHhHHHHHHHHHccCHHHHHHHHCCccHHHHHHHHHHHHHcCCCCCCCChhhhh-HHHHHHHHHcCCCCH
Confidence 34455566666778888888888763 568899999865 2 23443 567999999999854
No 20
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.62 E-value=2.7e+02 Score=28.78 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=45.8
Q ss_pred CHHHHHHHHhcCchhhHHHHHHhhCCCCcHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 026719 92 TAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKAL 158 (234)
Q Consensus 92 ~h~~LIE~fl~Tea~Eie~eIAR~Rp~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~ 158 (234)
=-+.||.|+++|-..-.-.+...-|.--.++||..|..-+.+- ..|+.-|--|...+
T Consensus 40 l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~----------~~Rl~~L~Ll~~~v 96 (668)
T PF04388_consen 40 LVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKP----------SYRLQALTLLGHFV 96 (668)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCc----------hhHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999866332 46776666665543
No 21
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=20.36 E-value=2.8e+02 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 026719 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKAL 158 (234)
Q Consensus 121 ~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~ 158 (234)
.+||..++...++.| -..++.|...+
T Consensus 85 ~~~f~~~rl~Re~~r------------~~~~e~L~~ii 110 (196)
T PF12685_consen 85 SDYFAEARLEREQSR------------SKQIETLKEII 110 (196)
T ss_dssp --HHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 478999888776664 34566666654
Done!