Query 026719
Match_columns 234
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s0p_A CAP, adenylyl cyclase-a 39.7 60 0.0021 27.2 6.0 62 70-135 35-97 (176)
2 1eij_A Hypothetical protein MT 31.8 78 0.0027 23.6 4.9 43 174-216 20-68 (80)
3 2cru_A Programmed cell death p 30.3 1.7E+02 0.0057 23.2 6.9 43 174-216 50-98 (118)
4 2qme_I CRIB domain of the seri 27.4 24 0.00082 22.3 1.3 11 30-40 10-21 (36)
5 1cee_B Wiskott-aldrich syndrom 25.9 23 0.0008 24.5 1.1 13 30-42 17-29 (59)
6 2fh0_A Hypothetical 16.0 kDa p 25.7 76 0.0026 23.8 4.0 43 174-216 18-66 (81)
7 1ez3_A Syntaxin-1A; three heli 25.0 1.5E+02 0.0051 21.8 5.5 40 118-164 5-44 (127)
8 2ygw_A Malonyl-COA decarboxyla 22.1 77 0.0026 30.5 4.2 97 103-215 32-158 (460)
9 2odb_B Serine/threonine-protei 21.8 26 0.00089 21.9 0.6 16 30-45 10-27 (35)
10 2pjw_H Uncharacterized protein 20.1 1.8E+02 0.0063 21.8 5.1 55 99-171 31-85 (88)
No 1
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=39.67 E-value=60 Score=27.15 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhcCchhhHHHHHHhhCC-CCcHHHHHHHHHHhhhhh
Q 026719 70 EQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRP-RLNQEFFSHLKFELGQLR 135 (234)
Q Consensus 70 ~~~~~~e~~~r~~~r~aR~~P~~h~~LIE~fl~Tea~Eie~eIAR~Rp-~lT~eFF~hL~~~i~~~r 135 (234)
++.-..++.-...+-.+. .|++.+ |-..+. |.++-=.+|...|- .-...||+||....+.+-
T Consensus 35 ~~aF~~qr~~L~~as~~k-KP~~~~-~~~lL~--pl~~~i~~i~~~re~nR~s~~fNHLsavsEgi~ 97 (176)
T 1s0p_A 35 VKAIDAEKALINTASQSK-KPSQET-LLELIK--PLNNFAAEVGKIRDSNRSSKFFNNLSAISESIG 97 (176)
T ss_dssp HHHHHHHHHHHHHHHHEE-CCCHHH-HHHHTH--HHHHHHHHHHHHHHTCTTCTTHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHhcC-CCCchh-HHHHHH--HHHHHHHHHHHHHHccCCCchhhHHHHHHHhhh
Confidence 333344555556666666 787444 544443 33333336666653 445789999999988764
No 2
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=31.77 E-value=78 Score=23.58 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcC-cchhhhhHHHHHHHHHhchh-----hHHHHHHHHHH
Q 026719 174 TARKSLTKILTS-KDVKATVCLTLLELVEQNKI-----NRSLLTLLDEN 216 (234)
Q Consensus 174 ~Ak~rl~kILtS-kd~kaa~c~kIlemae~nEL-----D~sLm~LL~~N 216 (234)
.|++||..|--. |++-.+|-+-|+.||-.|.| |..|..||++=
T Consensus 20 eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 20 EARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHH
Confidence 799999999666 56666677779999999998 67899998763
No 3
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=30.25 E-value=1.7e+02 Score=23.17 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcC-cchhhhhHHHHHHHHHhchh-----hHHHHHHHHHH
Q 026719 174 TARKSLTKILTS-KDVKATVCLTLLELVEQNKI-----NRSLLTLLDEN 216 (234)
Q Consensus 174 ~Ak~rl~kILtS-kd~kaa~c~kIlemae~nEL-----D~sLm~LL~~N 216 (234)
.|++||..|--. |++-.+|-+-|+.||-.|.| |..|..||+.=
T Consensus 50 eAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kItee~Lk~lL~~i 98 (118)
T 2cru_A 50 SARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKV 98 (118)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHH
Confidence 789999888544 67666677779999999998 67899999763
No 4
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=27.36 E-value=24 Score=22.26 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=9.2
Q ss_pred eeeeeccCCC-C
Q 026719 30 RISCVQWDPE-G 40 (234)
Q Consensus 30 ~i~~i~~dPe-g 40 (234)
.++-|||||. |
T Consensus 10 H~~Hvg~d~~tG 21 (36)
T 2qme_I 10 HTIHVGFDAVTG 21 (36)
T ss_dssp EEEEECCBTTTT
T ss_pred CeeEcccCCCCC
Confidence 6888999995 6
No 5
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=25.89 E-value=23 Score=24.50 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.2
Q ss_pred eeeeeccCCCCcC
Q 026719 30 RISCVQWDPEGIL 42 (234)
Q Consensus 30 ~i~~i~~dPeg~~ 42 (234)
.|+-|||||+.=|
T Consensus 17 Hv~HvG~d~~~gf 29 (59)
T 1cee_B 17 HVSHVGWDPQNGF 29 (59)
T ss_dssp EEEEECCCTTTCC
T ss_pred CcceeccCCCCCc
Confidence 7889999996435
No 6
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=25.75 E-value=76 Score=23.77 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcC-cchhhhhHHHHHHHHHhchh-----hHHHHHHHHHH
Q 026719 174 TARKSLTKILTS-KDVKATVCLTLLELVEQNKI-----NRSLLTLLDEN 216 (234)
Q Consensus 174 ~Ak~rl~kILtS-kd~kaa~c~kIlemae~nEL-----D~sLm~LL~~N 216 (234)
.|++||..|--. |++-.+|-+-|+.||-.|.| |..|..||++=
T Consensus 18 eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 18 QALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHH
Confidence 789999888555 57666677779999999998 67889998764
No 7
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.05 E-value=1.5e+02 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Q 026719 118 RLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEA 164 (234)
Q Consensus 118 ~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~~eavEa 164 (234)
.+-++||..+...-..+. ....-+.+|..+++.++.....
T Consensus 5 ~~m~~F~~~v~~I~~~i~-------~i~~~v~~l~~~~~~~L~~~~~ 44 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFID-------KIAENVEEVKRKHSAILASPNP 44 (127)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCSSC
T ss_pred chHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCc
Confidence 445778887666554443 3446667788888877665543
No 8
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=22.10 E-value=77 Score=30.50 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=54.3
Q ss_pred CchhhHHHHHHhhCCCCcHH-----HHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHH---------HHHHHhhhh
Q 026719 103 TEAQELEFEIARLRPRLNQE-----FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALL---------EGTEAYDNM 168 (234)
Q Consensus 103 Tea~Eie~eIAR~Rp~lT~e-----FF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~~---------eavEayDka 168 (234)
+|.+.+-.+|...=..|+++ ||.+|.... .+.+ +++. ++++.+.. ....+|+..
T Consensus 32 ~~~e~~a~~i~~~Y~~l~~~~~r~~fl~~La~~f-----~~d~-----~~v~--~a~~~y~~~~~~~~~~~~~~~~~~~L 99 (460)
T 2ygw_A 32 APAEGQCADFVSFYGGLAETAQRAELLGRLARGF-----GVDH-----GQVA--EQSAGVLHLRQQQREAAVLLQAEDRL 99 (460)
T ss_dssp ----CHHHHHHHHHHTCCSHHHHHHHHHHHHHHS-----SCCH-----HHHH--HHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh-----CCCH-----HHHH--HHHHHHHhcccCCcchhHHHHHHHHH
Confidence 34445555666666666666 999998844 3332 2222 22223222 011356666
Q ss_pred hHHHHHHHHHHHHHhcC-c-------chhhhhHHHHHHHHHhc--------hhhHHHHHHHHH
Q 026719 169 QADLITARKSLTKILTS-K-------DVKATVCLTLLELVEQN--------KINRSLLTLLDE 215 (234)
Q Consensus 169 ~~~l~~Ak~rl~kILtS-k-------d~kaa~c~kIlemae~n--------ELD~sLm~LL~~ 215 (234)
...++-.+.+|.+-++. + |.++- ++.+.+.+ .||..|-.||+.
T Consensus 100 ~~aleP~r~~L~~rln~~pgG~~fLV~mRaD----LL~~l~~~~~~~~~L~~Ld~dl~~Llss 158 (460)
T 2ygw_A 100 RYALVPRYRGLFHHISKLDGGVRFLVQLRAD----LLEAQALKLVEGPDVREMNGVLKGMLSE 158 (460)
T ss_dssp HHHTSCTTHHHHHHHHTSTTHHHHHHHHHHH----HHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHhcCCchHHHHHHHHHH----HHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 66666556666555554 3 35555 88888766 688888888876
No 9
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=21.78 E-value=26 Score=21.91 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=11.7
Q ss_pred eeeeeccCCC-C-cCCCC
Q 026719 30 RISCVQWDPE-G-ILGSA 45 (234)
Q Consensus 30 ~i~~i~~dPe-g-~~~~p 45 (234)
.++-|+|||. | +-|-|
T Consensus 10 H~~Hvg~d~~tG~f~Glp 27 (35)
T 2odb_B 10 HRVHTSFDPKEGKFVGLP 27 (35)
T ss_dssp EEEEEEEETTTTEEESCC
T ss_pred CeeeeeECCCCCcccCCC
Confidence 6888999997 6 44633
No 10
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=20.07 E-value=1.8e+02 Score=21.83 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=43.4
Q ss_pred HHhcCchhhHHHHHHhhCCCCcHHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026719 99 YFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD 171 (234)
Q Consensus 99 ~fl~Tea~Eie~eIAR~Rp~lT~eFF~hL~~~i~~~rfa~~~~~~~edrl~ELeaL~k~~~eavEayDka~~~ 171 (234)
..-+.+.+++=-.|--.|| +|...|+.|. .+..+|-.|...+..++-.||.+-+.
T Consensus 31 ~~~d~eiq~LY~~v~~lRP--------kL~~li~kys----------qKk~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 31 VLQDPHIGDMYGSVTPLRP--------QVTRMLGKYA----------KEKEDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHSCHHHHHHHHHHTTHHH--------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccHHHHHHHHHHhhhhH--------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777888887 4557888885 68889999999999999999998553
Done!