Query 026722
Match_columns 234
No_of_seqs 176 out of 1467
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.5E-47 3.2E-52 327.5 15.7 209 2-214 3-212 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 3.8E-22 8.3E-27 146.8 7.1 86 129-214 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.9 4.3E-22 9.3E-27 146.5 6.6 86 7-93 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 2.2E-14 4.7E-19 123.4 4.4 88 5-93 125-212 (243)
5 COG4095 Uncharacterized conser 99.4 9.7E-13 2.1E-17 95.3 6.9 85 1-89 1-85 (89)
6 COG4095 Uncharacterized conser 99.4 2.3E-12 5E-17 93.4 7.7 83 127-212 5-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.7 1.4E-06 3.1E-11 74.7 18.0 191 6-205 5-215 (220)
8 PF04193 PQ-loop: PQ loop repe 98.2 7E-06 1.5E-10 55.9 6.3 57 6-65 3-59 (61)
9 PF04193 PQ-loop: PQ loop repe 98.2 7.6E-06 1.6E-10 55.7 6.5 57 128-187 3-59 (61)
10 KOG3211 Predicted endoplasmic 97.7 0.00082 1.8E-08 56.6 12.2 195 7-215 33-228 (230)
11 KOG2913 Predicted membrane pro 96.7 0.034 7.4E-07 48.9 12.3 203 6-213 7-249 (260)
12 TIGR00951 2A43 Lysosomal Cysti 96.6 0.0053 1.2E-07 52.6 5.9 50 127-179 4-53 (220)
13 PRK01021 lpxB lipid-A-disaccha 96.2 0.43 9.4E-06 46.7 17.2 189 4-206 9-215 (608)
14 PHA02246 hypothetical protein 95.4 1.2 2.6E-05 36.2 15.6 143 1-167 1-146 (192)
15 PF03650 MPC: Uncharacterised 95.4 0.0032 6.9E-08 48.7 -0.7 72 146-219 32-105 (119)
16 smart00679 CTNS Repeated motif 94.5 0.036 7.8E-07 32.4 2.4 26 22-47 2-27 (32)
17 PF10688 Imp-YgjV: Bacterial i 94.5 1.5 3.2E-05 35.9 12.7 150 4-202 4-153 (163)
18 smart00679 CTNS Repeated motif 93.1 0.081 1.8E-06 30.9 2.1 27 144-170 2-28 (32)
19 KOG1589 Uncharacterized conser 92.8 0.026 5.7E-07 42.8 -0.4 69 155-223 43-113 (118)
20 PHA02246 hypothetical protein 89.6 2.3 5E-05 34.6 7.7 65 13-77 114-178 (192)
21 KOG2913 Predicted membrane pro 88.7 2.1 4.5E-05 37.8 7.5 58 124-184 6-63 (260)
22 PF03650 MPC: Uncharacterised 86.6 0.23 5E-06 38.5 0.3 66 24-91 32-98 (119)
23 KOG1589 Uncharacterized conser 85.3 0.34 7.3E-06 36.9 0.6 56 33-89 43-100 (118)
24 COG3952 Predicted membrane pro 84.7 5.8 0.00013 30.1 6.9 85 128-216 27-111 (113)
25 KOG2489 Transmembrane protein 83.4 36 0.00078 32.9 13.1 187 16-216 329-556 (592)
26 PF07578 LAB_N: Lipid A Biosyn 78.8 7.3 0.00016 27.6 5.4 42 157-198 24-65 (72)
27 PF07578 LAB_N: Lipid A Biosyn 73.9 8.7 0.00019 27.2 4.7 58 18-77 8-65 (72)
28 KOG3145 Cystine transporter Cy 73.7 27 0.0006 31.5 8.8 133 21-163 137-297 (372)
29 PF15102 TMEM154: TMEM154 prot 72.4 5.6 0.00012 32.0 3.8 31 186-216 59-89 (146)
30 KOG3211 Predicted endoplasmic 71.8 6.9 0.00015 33.4 4.4 70 19-88 153-222 (230)
31 PRK05771 V-type ATP synthase s 54.2 2.3E+02 0.005 28.0 15.1 51 20-81 325-375 (646)
32 PF10688 Imp-YgjV: Bacterial i 53.2 32 0.0007 28.0 5.1 37 45-82 118-154 (163)
33 TIGR00341 conserved hypothetic 48.7 30 0.00066 31.5 4.6 52 41-93 243-294 (325)
34 PF03219 TLC: TLC ATP/ADP tran 42.5 3.2E+02 0.0069 26.3 11.5 106 123-229 314-431 (491)
35 PHA03049 IMV membrane protein; 42.2 26 0.00056 24.3 2.4 22 194-215 8-29 (68)
36 KOG2532 Permease of the major 41.6 2E+02 0.0044 27.3 9.3 140 4-147 261-412 (466)
37 PF06946 Phage_holin_5: Phage 41.1 1.5E+02 0.0032 22.0 6.4 84 1-91 1-84 (93)
38 PF05961 Chordopox_A13L: Chord 39.7 30 0.00066 24.1 2.4 22 194-215 8-29 (68)
39 PF07857 DUF1632: CEO family ( 39.4 71 0.0015 28.0 5.4 66 127-192 180-254 (254)
40 KOG1590 Uncharacterized conser 37.6 39 0.00084 26.3 3.0 74 128-209 28-103 (132)
41 PF07857 DUF1632: CEO family ( 34.6 96 0.0021 27.2 5.4 41 170-210 93-136 (254)
42 PF01102 Glycophorin_A: Glycop 32.6 19 0.00041 28.1 0.6 28 198-225 78-105 (122)
43 TIGR01478 STEVOR variant surfa 31.2 23 0.00049 31.7 0.9 21 195-215 268-289 (295)
44 KOG3618 Adenylyl cyclase [Gene 30.5 6.5E+02 0.014 26.3 11.0 32 45-76 86-118 (1318)
45 KOG4314 Predicted carbohydrate 27.4 1.7E+02 0.0037 25.2 5.5 52 122-173 127-178 (290)
46 KOG3106 ER lumen protein retai 26.7 2.4E+02 0.0053 23.9 6.2 59 143-206 129-191 (212)
47 PHA00726 hypothetical protein 26.4 41 0.0009 24.5 1.4 25 194-218 11-35 (89)
48 PF05977 MFS_3: Transmembrane 26.2 2.7E+02 0.0058 26.9 7.4 14 188-201 171-184 (524)
49 PF08693 SKG6: Transmembrane a 26.0 75 0.0016 19.8 2.3 19 195-213 22-40 (40)
50 PTZ00370 STEVOR; Provisional 25.9 24 0.00052 31.5 0.2 22 194-215 263-285 (296)
51 TIGR00341 conserved hypothetic 25.9 5.1E+02 0.011 23.6 11.7 52 42-93 114-165 (325)
52 PRK01021 lpxB lipid-A-disaccha 25.7 3.7E+02 0.008 26.8 8.2 79 3-86 138-216 (608)
53 PF05602 CLPTM1: Cleft lip and 24.8 1.4E+02 0.0031 28.1 5.2 72 11-82 305-376 (438)
54 PF01102 Glycophorin_A: Glycop 23.4 1.4E+02 0.003 23.3 4.0 21 3-23 66-86 (122)
55 PF07787 DUF1625: Protein of u 22.7 3.1E+02 0.0067 23.6 6.5 24 128-151 187-210 (248)
56 PRK11387 S-methylmethionine tr 21.9 3.2E+02 0.007 25.6 7.0 92 2-98 361-464 (471)
57 PF06027 DUF914: Eukaryotic pr 21.9 6.1E+02 0.013 23.1 11.8 57 150-211 251-308 (334)
58 PF03134 TB2_DP1_HVA22: TB2/DP 21.8 1.5E+02 0.0031 21.4 3.7 37 139-183 11-47 (94)
59 COG3952 Predicted membrane pro 20.5 4E+02 0.0086 20.4 5.7 54 33-87 50-103 (113)
60 TIGR03813 put_Glu_GABA_T putat 20.3 7.1E+02 0.015 23.2 10.3 14 170-183 406-419 (474)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.5e-47 Score=327.47 Aligned_cols=209 Identities=46% Similarity=0.845 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHh
Q 026722 2 KDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVY 81 (234)
Q Consensus 2 d~~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~ 81 (234)
+....++|..|++.+++++++|+|+++||+|+||+|+.|..||+++.+||.+|+.||.+.+|.+.++..|.+|+.++++|
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Y 82 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVY 82 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999998883367999999999999999
Q ss_pred hhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccc
Q 026722 82 VTLFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLALEG-EARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEF 160 (234)
Q Consensus 82 ~~v~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~ 160 (234)
+..|+.|+++|+ +.+.. ....++.+++...+++...++ +.+.+.+|.+|.+++++||+|||..+|+|+|+||+|+
T Consensus 83 i~~f~~ya~~k~-~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 83 ISIFLYYAPKKK-TVKIV---LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHheecCchh-eeEee---ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 999999998877 32211 122233455555556665655 5568999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHHHHhheeecCCCC
Q 026722 161 MPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQLVLYAIYRNAKP 214 (234)
Q Consensus 161 ~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~ql~l~~~y~~~~~ 214 (234)
||++++++.++++..|++||++++|.|+.+||++|..++++|+.+|++||++++
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTE 212 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcc
Confidence 999999999999999999999999999999999999999999999999997653
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=3.8e-22 Score=146.80 Aligned_cols=86 Identities=34% Similarity=0.580 Sum_probs=83.6
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHHHHhhee
Q 026722 129 AIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQLVLYAI 208 (234)
Q Consensus 129 ~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~ql~l~~~ 208 (234)
++|.+|.+.++++++||++++++++|+|+++++|+.+.++.++||.+|+.||++++|++++++|.+|.+++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 026722 209 YRNAKP 214 (234)
Q Consensus 209 y~~~~~ 214 (234)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998764
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=4.3e-22 Score=146.54 Aligned_cols=86 Identities=28% Similarity=0.656 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhhe
Q 026722 7 YVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFF 86 (234)
Q Consensus 7 ~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~ 86 (234)
++|++|++.++++++||+|+++|++|+||+|++|+.|++..++||.+|+.||++++|+ +++.+|++|.+++.+|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~-~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDW-PIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCe-eEEeeHHHHHHHHHHHHhheE
Confidence 5799999999999999999999999999999999999999999999999999999996 699999999999999999999
Q ss_pred eeccchH
Q 026722 87 IYAPTKA 93 (234)
Q Consensus 87 ~y~~~~~ 93 (234)
+|+++||
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998775
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.48 E-value=2.2e-14 Score=123.38 Aligned_cols=88 Identities=24% Similarity=0.454 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhh
Q 026722 5 SFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTL 84 (234)
Q Consensus 5 ~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v 84 (234)
.+.+|.+|..++++||.||+..+++++|+||+|.+++....+.++++..|++||++.+|.+ +.++|.+|+.++..|+.+
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~-IaipN~iG~~l~~~QL~L 203 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFF-IAIPNVLGFLLGLIQLIL 203 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeE-EEcccHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999988888999999999999999999966 889999999999999999
Q ss_pred heeeccchH
Q 026722 85 FFIYAPTKA 93 (234)
Q Consensus 85 ~~~y~~~~~ 93 (234)
|++|++++.
T Consensus 204 y~~y~~~~~ 212 (243)
T KOG1623|consen 204 YFKYPKTTE 212 (243)
T ss_pred hhhcCCCcc
Confidence 999987654
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=9.7e-13 Score=95.31 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHH
Q 026722 1 MKDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAV 80 (234)
Q Consensus 1 ~d~~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~ 80 (234)
||...+.+|..|++.+...+ +||..+++|+||++++|+..+......+.+|+.||++++| .|+...|.++..++..
T Consensus 1 m~~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 1 MDFFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred CcchhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHcc-CcchhHHHHHHHHHHH
Confidence 78899999999999888764 9999999999999999999999999999999999999998 6799999999999998
Q ss_pred hhhhheeec
Q 026722 81 YVTLFFIYA 89 (234)
Q Consensus 81 ~~~v~~~y~ 89 (234)
-++...+|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 887776654
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.3e-12 Score=93.35 Aligned_cols=83 Identities=19% Similarity=0.347 Sum_probs=77.4
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHHHHhh
Q 026722 127 IDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQLVLY 206 (234)
Q Consensus 127 ~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~ql~l~ 206 (234)
...+|.+|+.++.++| +||.-+++|+||++++++.+........++|.+||.+++|.++...|.++..++.+-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4678999999999999 9999999999999999999999999999999999999999999999999999999988887
Q ss_pred eeecCC
Q 026722 207 AIYRNA 212 (234)
Q Consensus 207 ~~y~~~ 212 (234)
..|..+
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 777643
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.74 E-value=1.4e-06 Score=74.69 Aligned_cols=191 Identities=11% Similarity=0.038 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhc-------ccCCcceeee----ehhhH
Q 026722 6 FYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGI-------TRPGSYLVAT----VNGFG 74 (234)
Q Consensus 6 ~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~-------l~~d~~~v~~----~N~~G 74 (234)
.++|+...+ +-..+-+||+++.+|+||++++|+..+..-......|..|=. ..++ +|.-. .|-+-
T Consensus 5 ~~lG~~~~~---~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~-~~~~~~~v~~edl~ 80 (220)
T TIGR00951 5 QILGWGYVA---AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNE-FPLSSPGVTQNDVF 80 (220)
T ss_pred HHHHHHHHH---HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhc-cccccCCCcHHHHH
Confidence 445555544 444567999999999999999999999999999999999921 1121 22111 12222
Q ss_pred -----HHHHHHhhhhheeeccchHHHHHH-HH-HHHHHHHHHHHHHHHHHHh-cccchhHHHHHHhHHHHHHHHHhhhhh
Q 026722 75 -----ILVEAVYVTLFFIYAPTKAMRAKT-AI-IFGILDVGFLGAAIAATRL-ALEGEARIDAIGFMCAGLNIIMYASPL 146 (234)
Q Consensus 75 -----~~l~~~~~~v~~~y~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~G~~~~~~~i~~~~sPl 146 (234)
.++......-+.+|.+..+ |..+ .. .......+..+.. ..... ...+.+....++.+...++++-| +
T Consensus 81 ~ai~~~il~~l~~~q~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~l~~iki~is~iky---i 155 (220)
T TIGR00951 81 FTLHAILICFIVLHQCGDYERGWQ-RVSNPWILRILVALLACFATL-LVALLSPITPLAFVTMLSYIKVAVTLVKY---F 155 (220)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc-ccchhHHHHHHHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHH---h
Confidence 2222222222233332211 1111 11 0111101011111 11111 22344556667777777777666 9
Q ss_pred hhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhc-CCeeeecchhhHHHHHHHHHHh
Q 026722 147 SAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLV-RDIFLGVPNGTGFLLGTAQLVL 205 (234)
Q Consensus 147 ~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~-~d~~v~i~N~~g~~l~~~ql~l 205 (234)
||++.-.|.||+++.|.......+..++.-..-.... +|......-.+++.+..+-+.-
T Consensus 156 PQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q 215 (220)
T TIGR00951 156 PQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQ 215 (220)
T ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877777765555444422 6666666666677766654443
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.16 E-value=7e-06 Score=55.92 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcc
Q 026722 6 FYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSY 65 (234)
Q Consensus 6 ~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~ 65 (234)
+++|+++.+ +...+.+||+++.+|+|+++++|...+.....+..+|+.|++..++.+
T Consensus 3 ~~~g~i~~~---~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIV---LWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555555 555668999999999999999999999999999999999999887643
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.16 E-value=7.6e-06 Score=55.74 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=50.6
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCee
Q 026722 128 DAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIF 187 (234)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~ 187 (234)
+.+|.++.++....+ +||+.+.+|+|+++++++.+....+.++.+|..|.+..++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467788777777766 999999999999999999999999999999999999987654
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.72 E-value=0.00082 Score=56.64 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhhe
Q 026722 7 YVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFF 86 (234)
Q Consensus 7 ~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~ 86 (234)
.+|+.....++.. -+||+.+|+.+||++++|...+..-.+.-..-+.|.+-.+-+| .-.--.+=++++.+-+..+.
T Consensus 33 lLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF-ss~gE~~fLl~Q~vili~~i 108 (230)
T KOG3211|consen 33 LLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF-SSYGEYPFLLLQAVILILCI 108 (230)
T ss_pred hhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc-hhHHHHHHHHHHHHHHHHHH
Confidence 4455444444444 6999999999999999999999999999999999986655333 22222222344444333333
Q ss_pred eeccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHH
Q 026722 87 IYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLALEGEARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLS 166 (234)
Q Consensus 87 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~ 166 (234)
.+-+....+.... ... .+. +............++-...+...-+.-.|-+.|+..-.|+|++..+++...
T Consensus 109 f~f~~~~~~~v~~--l~~-----~~~---v~~~~~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~ 178 (230)
T KOG3211|consen 109 FHFSGQTVTVVQF--LGY-----IAL---VVSVLASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITV 178 (230)
T ss_pred HHhccceeehhhH--HHH-----HHH---HHHHHHHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHH
Confidence 2222111010000 000 011 111111111222333333333333344778999999999999999999988
Q ss_pred HHHHHhHHHHHHHhhhc-CCeeeecchhhHHHHHHHHHHhheeecCCCCC
Q 026722 167 FFFFLNGGIWAFYALLV-RDIFLGVPNGTGFLLGTAQLVLYAIYRNAKPS 215 (234)
Q Consensus 167 ~~~~~~~~~W~~YG~~~-~d~~v~i~N~~g~~l~~~ql~l~~~y~~~~~~ 215 (234)
..++-.+..-.+|.+-. +|.-+...=++...++..-..-.++|++++++
T Consensus 179 fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~~ 228 (230)
T KOG3211|consen 179 FLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAIK 228 (230)
T ss_pred HHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 88988898888998877 67777776777777777666667777776654
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.73 E-value=0.034 Score=48.92 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhh
Q 026722 6 FYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLF 85 (234)
Q Consensus 6 ~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~ 85 (234)
+.-..+|++.+++-..+-+||+.+..|+|+.+++|+.+.+.-......=+.|..+.+-. ++...-..=..++-..+.+.
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~-~~~~~~~~yy~~~d~~l~~q 85 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG-STLKVQAVYYTLADSVLFVQ 85 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHH
Confidence 44456677777777778899999999999999999999888777777777777666542 11111111111122222222
Q ss_pred eeeccchHH---------HHHHHHH--HHH----------------HHHHHHHHHHHHH---Hhcc--c--ch-hHHHHH
Q 026722 86 FIYAPTKAM---------RAKTAII--FGI----------------LDVGFLGAAIAAT---RLAL--E--GE-ARIDAI 130 (234)
Q Consensus 86 ~~y~~~~~~---------~~~~~~~--~~~----------------~~~~~l~~~~~~~---~~~~--~--~~-~~~~~~ 130 (234)
..|.+++.+ ....... ... ........+.... .... . .+ ...+.+
T Consensus 86 ~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (260)
T KOG2913|consen 86 CLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSL 165 (260)
T ss_pred HHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcch
Confidence 222222211 0000000 000 0000111111110 1111 1 12 344566
Q ss_pred HhHHH-HHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCeeeecchhh----HHHHHHHHHHh
Q 026722 131 GFMCA-GLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGT----GFLLGTAQLVL 205 (234)
Q Consensus 131 G~~~~-~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~----g~~l~~~ql~l 205 (234)
|.+.. ..+.+..++++||+..-.|.|+++++++.+.......+ +.|+.-. ...--.|+.. ...+-+.-..-
T Consensus 166 g~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~-~~~~n~~w~~~~~~~~~~D~~~~~q 241 (260)
T KOG2913|consen 166 GAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSS-YLVTNLPWLVDSKGTIYLDIFIFLQ 241 (260)
T ss_pred HHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---ccccccc-ccccCCcccccCCcchhHHHHHHHH
Confidence 66544 44555678899999999999999999986665444444 3455441 1111122222 44455556666
Q ss_pred heeecCCC
Q 026722 206 YAIYRNAK 213 (234)
Q Consensus 206 ~~~y~~~~ 213 (234)
++.|++.|
T Consensus 242 ~~~~~~~~ 249 (260)
T KOG2913|consen 242 FFNYRASK 249 (260)
T ss_pred HHHhhccc
Confidence 77777666
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.55 E-value=0.0053 Score=52.65 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHH
Q 026722 127 IDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFY 179 (234)
Q Consensus 127 ~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~Y 179 (234)
.+.+|....++....+ +||+.+..|+||++++|+......++....|.+|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4677888888777777 8999999999999999999999999999999999
No 13
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.18 E-value=0.43 Score=46.74 Aligned_cols=189 Identities=12% Similarity=0.139 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhH-HHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhh
Q 026722 4 LSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPY-ICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYV 82 (234)
Q Consensus 4 ~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~-~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~ 82 (234)
+...+|.+|.+ .+..--+-|-..-.|+|.+ .-|..| ..++..+.+-+.||++.+| ++++....+|.++..=-+
T Consensus 9 ~~~~~G~~~q~---~F~~rf~~QW~~sek~~~s--~~p~~FW~~Sl~g~~~l~~y~~~~~~-~~~~~~q~~~~~iy~rNl 82 (608)
T PRK01021 9 WLYPLGLFANL---FFGSAFCIQWFLSKKRKYS--YVPKIFWILSSIGAVLMICHGFIQSQ-FPIALLHSFNLIIYFRNL 82 (608)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhcCCc--cCchHHHHHHHHHHHHHHHHHHHhcC-CcEEEecccceEEEeehh
Confidence 34456666655 3333345555555555543 334444 5688889999999999987 457765555543311111
Q ss_pred hhheeeccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc--c---------c--h---hHHHHHHhHHHHHHHHHhhhh
Q 026722 83 TLFFIYAPTKAMRAKTAIIFGILDVGFLGA-AIAATRLAL--E---------G--E---ARIDAIGFMCAGLNIIMYASP 145 (234)
Q Consensus 83 ~v~~~y~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~--~---------~--~---~~~~~~G~~~~~~~i~~~~sP 145 (234)
.+-.. ++. -.+...+.+..++++.+. +.+.++... + . + .--..+|++|.++-..=|
T Consensus 83 ~l~~~---~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf--- 155 (608)
T PRK01021 83 NIASS---RPL-SVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF--- 155 (608)
T ss_pred hhccc---ccc-hHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---
Confidence 11111 111 222221122222211111 111122111 1 1 1 122456776665443333
Q ss_pred hhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHHHHhh
Q 026722 146 LSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQLVLY 206 (234)
Q Consensus 146 l~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~ql~l~ 206 (234)
+-|-.. -+++.-+.+|..--..+++.+++=++|++..+|...++....|.+..+--+.+.
T Consensus 156 ~~Qw~~-se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li 215 (608)
T PRK01021 156 FIQWFY-LEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIA 215 (608)
T ss_pred HHHHHH-HHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHH
Confidence 344332 244444568888778999999999999999999999999999998766665443
No 14
>PHA02246 hypothetical protein
Probab=95.36 E-value=1.2 Score=36.18 Aligned_cols=143 Identities=15% Similarity=0.231 Sum_probs=78.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCC--cceeeeehhhHHHHH
Q 026722 1 MKDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPG--SYLVATVNGFGILVE 78 (234)
Q Consensus 1 ~d~~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d--~~~v~~~N~~G~~l~ 78 (234)
||.....+..+=.+ ..-....|+.+...|.|+.+++|- .|+-.......-..|-.+..| .|. +++-.....++
T Consensus 1 md~~~~~~s~~yai---lit~gYipgL~slvk~~nv~GvS~-~FWYLi~~tvgiSfyNlL~T~~~~fq-i~svg~nl~lg 75 (192)
T PHA02246 1 MDNLSHYLSILYAI---LITVGYIPGLVALVKAESVKGVSN-YFWYLIVATVGISFYNLLLTDASVFQ-IVSVGLNLTLG 75 (192)
T ss_pred CchHHHHHHHHHHH---HHHhhhhhhHHHHhhhcccccHHH-HHHHHHHHHHHHHHHHHHhcCCceEE-Eeeeehhhhhh
Confidence 67666666554444 444457999999999999999874 345555556677788876643 243 33333444555
Q ss_pred HHhhhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCC
Q 026722 79 AVYVTLFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLAL-EGEARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKS 157 (234)
Q Consensus 79 ~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks 157 (234)
.+.+.+-- |+++ +. .. .-+. ..+.++. +.. +..+..+.+|... -+..| .+|+.+-.|||+
T Consensus 76 ivcLlv~~-~rkk---d~--f~-~~fi--iifSLll----fll~~~~evtQtVat~t---IiLaY---i~QIIqfyKTK~ 136 (192)
T PHA02246 76 IVCLLVAS-YRKK---DY--FS-IPFI--IVFSLLL----FLLSDFTALTQTVATIT---IILAY---VTQITTFYKTKS 136 (192)
T ss_pred hhheeeeh-hhcc---cc--cc-chHH--HHHHHHH----HHHhhhHHHHHHHHHHH---HHHHH---HHHHHHHhhhcc
Confidence 55443322 2211 11 00 0000 0111111 111 2223334444332 22334 899999999999
Q ss_pred ccccchHHHH
Q 026722 158 VEFMPFMLSF 167 (234)
Q Consensus 158 ~~~~~~~~~~ 167 (234)
.|+.+..+.+
T Consensus 137 SEg~n~~l~l 146 (192)
T PHA02246 137 AEGTNRFLFL 146 (192)
T ss_pred cCCCChhHHH
Confidence 9999876554
No 15
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=95.36 E-value=0.0032 Score=48.73 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=60.1
Q ss_pred hhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhc--CCeeeecchhhHHHHHHHHHHhheeecCCCCCcccc
Q 026722 146 LSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLV--RDIFLGVPNGTGFLLGTAQLVLYAIYRNAKPSKNAA 219 (234)
Q Consensus 146 l~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~--~d~~v~i~N~~g~~l~~~ql~l~~~y~~~~~~~~~~ 219 (234)
+..+.+. +|+.|.++..|..+-.+.+.+|+=|++.+ +|+.+..-|+.-...+..|+.=++.|...+++...+
T Consensus 32 iA~i~D~--~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 32 IAGIADM--KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred eeehhhc--CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Confidence 3344442 68999999999999999999999999999 888888889999999999999988888765554444
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.52 E-value=0.036 Score=32.45 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhcCcCCccchhHHHH
Q 026722 22 APVRTFWRIIKHRSTEEFQSLPYICT 47 (234)
Q Consensus 22 Splp~i~~i~k~kst~~~s~~p~~~~ 47 (234)
+-+||+.+.+|+|+++++|...+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 46899999999999999987666543
No 17
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=94.50 E-value=1.5 Score=35.87 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhh
Q 026722 4 LSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVT 83 (234)
Q Consensus 4 ~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~ 83 (234)
..+.+|.+|.+..+..+ +.++ +|. ........|.++...-.+.+.+. -..+..++.....
T Consensus 4 ~aQ~~g~ia~~l~~~sf-----~~k~---~~~-------l~~~~~~~~~~~~ihf~LLGa~t-----aa~~~~ls~~R~~ 63 (163)
T PF10688_consen 4 LAQILGFIAFLLGILSF-----QQKD---DRR-------LLLLQAISCLLFAIHFALLGAWT-----AALSMLLSAVRNF 63 (163)
T ss_pred HHHHHHHHHHHHHHHHH-----Hccc---HHH-------HHHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHH
Confidence 45677888777666543 1111 111 22456677777777777777632 3466677777777
Q ss_pred hheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccch
Q 026722 84 LFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRLALEGEARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPF 163 (234)
Q Consensus 84 v~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~ 163 (234)
+..++++ + .. + ..+..+ ....+. ...+.-.+.++.++++.....- .++++.
T Consensus 64 ~s~~~~~--~-~v--~--~~Fi~~-----~~~~~~--~~~~g~~~~l~~~as~~~t~a~----------f~~~~~----- 114 (163)
T PF10688_consen 64 VSIRTRS--R-WV--M--AVFIAL-----SLVMGL--FTWQGWIELLPYAASVLGTIAL----------FMLDGI----- 114 (163)
T ss_pred HHHHhCC--H-HH--H--HHHHHH-----HHHHHH--HHHhhHHHHHHHHHHHHHHHHH----------HhcCch-----
Confidence 7665543 2 11 1 111111 111111 1223445677777766555432 122222
Q ss_pred HHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHH
Q 026722 164 MLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQ 202 (234)
Q Consensus 164 ~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~q 202 (234)
.|-...++++.+|.+|++..++++...-|......+.+.
T Consensus 115 ~mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 115 KMRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 345668999999999999999999888888877766555
No 18
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.09 E-value=0.081 Score=30.89 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred hhhhhhhHHhhCCCccccchHHHHHHH
Q 026722 144 SPLSAMKTVVTTKSVEFMPFMLSFFFF 170 (234)
Q Consensus 144 sPl~~i~~vi~tks~~~~~~~~~~~~~ 170 (234)
+-+||+.+.+|+|+++++|+.+.+..+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 458999999999999999987766443
No 19
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.026 Score=42.80 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=58.0
Q ss_pred CCCccccchHHHHHHHHhHHHHHHHhhhc--CCeeeecchhhHHHHHHHHHHhheeecCCCCCccccCCcc
Q 026722 155 TKSVEFMPFMLSFFFFLNGGIWAFYALLV--RDIFLGVPNGTGFLLGTAQLVLYAIYRNAKPSKNAANSME 223 (234)
Q Consensus 155 tks~~~~~~~~~~~~~~~~~~W~~YG~~~--~d~~v~i~N~~g~~l~~~ql~l~~~y~~~~~~~~~~~~~~ 223 (234)
.|..|.+|.....+-+..++.|+=|.+.+ +|+.+...|+.=.+-+++|+.=+..|....++.+.++.++
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~~~~~~~~~~ 113 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQKALEGESEQK 113 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 57788899999999999999999999999 8999999999999999999999999976555555444333
No 20
>PHA02246 hypothetical protein
Probab=89.57 E-value=2.3 Score=34.61 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHH
Q 026722 13 NIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILV 77 (234)
Q Consensus 13 ~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l 77 (234)
++.+....++.+||+.+-+|+|+.|+.|+.-++.....-.+-..-=.+++-..-++++....+.+
T Consensus 114 tVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 114 TVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHHHHHHH
Confidence 34445566778999999999999999998877665444333222223444322255555555444
No 21
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=88.66 E-value=2.1 Score=37.77 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=44.6
Q ss_pred hhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcC
Q 026722 124 EARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVR 184 (234)
Q Consensus 124 ~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~ 184 (234)
++.....|.+..++....+ .||+.+..|+|+.+++|....+...+....=.+|..+.+
T Consensus 6 ~~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 4455666777777666666 899999999999999999888877777776666666554
No 22
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=86.65 E-value=0.23 Score=38.53 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccC-CcceeeeehhhHHHHHHHhhhhheeeccc
Q 026722 24 VRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRP-GSYLVATVNGFGILVEAVYVTLFFIYAPT 91 (234)
Q Consensus 24 lp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~-d~~~v~~~N~~G~~l~~~~~~v~~~y~~~ 91 (234)
+..+.++ +|..|.+|...-.+.++.+.+|+.|++.+. -.+.++.+|.+-...+.+++.=++.|...
T Consensus 32 iA~i~D~--~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~ 98 (119)
T PF03650_consen 32 IAGIADM--KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYS 98 (119)
T ss_pred eeehhhc--CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344454 688999999999999999999999999774 23568999999999999999877777543
No 23
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.30 E-value=0.34 Score=36.88 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=49.3
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHHhccc--CCcceeeeehhhHHHHHHHhhhhheeec
Q 026722 33 HRSTEEFQSLPYICTLLNSSLWTYYGITR--PGSYLVATVNGFGILVEAVYVTLFFIYA 89 (234)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~l~--~d~~~v~~~N~~G~~l~~~~~~v~~~y~ 89 (234)
.|..|.+|...........++|..|++.+ +| +.++.+|.+=...+.+++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN-~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKN-YSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccc-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999866 35 4589999999999999998888774
No 24
>COG3952 Predicted membrane protein [Function unknown]
Probab=84.66 E-value=5.8 Score=30.11 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=62.2
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHHHHhhe
Q 026722 128 DAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQLVLYA 207 (234)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~ql~l~~ 207 (234)
..+|..+..+-..=| +-| .-..+.++.+.+|...--++.+.+.+=+.|.+-++|..=+..|++|....+.-+-+..
T Consensus 27 ~LiG~~g~~lFt~Rf---~VQ-w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 27 KLIGFSGQLLFTGRF---VVQ-WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHH
Confidence 455666654333222 222 2335778888899888889999999999999999999888889999998888877666
Q ss_pred eecCCCCCc
Q 026722 208 IYRNAKPSK 216 (234)
Q Consensus 208 ~y~~~~~~~ 216 (234)
.-++.||-+
T Consensus 103 ker~~~~~~ 111 (113)
T COG3952 103 KERRWKPTK 111 (113)
T ss_pred HHhcccCcC
Confidence 555666544
No 25
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=83.40 E-value=36 Score=32.86 Aligned_cols=187 Identities=19% Similarity=0.179 Sum_probs=117.7
Q ss_pred HHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhhe---------
Q 026722 16 SVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFF--------- 86 (234)
Q Consensus 16 si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~--------- 86 (234)
++.=+++-=..+.-+.|+||-+++|.-..+..+++++.=++|=+=-+-.+.|.++-.+|+++.+.=+---+
T Consensus 329 ~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~ 408 (592)
T KOG2489|consen 329 SVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGL 408 (592)
T ss_pred HHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEecccc
Confidence 33444555566677889999999999999999999988888753222246688889999888765432111
Q ss_pred --------------eeccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHhHHHHHHHHHhhhhh
Q 026722 87 --------------IYAPTKAMR-----AKTAIIFGILDVGFLGAAIAATRLALEG-EARIDAIGFMCAGLNIIMYASPL 146 (234)
Q Consensus 87 --------------~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~G~~~~~~~i~~~~sPl 146 (234)
.|..++.+. .|-+. ++.. -++...++|..+..++ .-..-++-.+.+.+-.+-|.--+
T Consensus 409 i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs-~~L~--PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~ 485 (592)
T KOG2489|consen 409 IPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLS-YLLF--PLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFML 485 (592)
T ss_pred cccccccccccccccccccchhHHHHHHHHHHH-HHHH--HHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhC
Confidence 111111111 11111 2211 1223334455555655 45566666666666666666678
Q ss_pred hhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhc------------CCeeeecchhhHHHHHHHHHHhheeecCCCC
Q 026722 147 SAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLV------------RDIFLGVPNGTGFLLGTAQLVLYAIYRNAKP 214 (234)
Q Consensus 147 ~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~------------~d~~v~i~N~~g~~l~~~ql~l~~~y~~~~~ 214 (234)
||+---.|-||++-+|-.+..=-++|.+.==++++.+ +|+.- ++++.-.++||-++.
T Consensus 486 PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVF-----------lIYLYQRWlYpVD~t 554 (592)
T KOG2489|consen 486 PQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVF-----------LIYLYQRWLYPVDKT 554 (592)
T ss_pred hHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEE-----------EeeehhhhccccChh
Confidence 9999999999999999998877777776554554443 55533 235555688886665
Q ss_pred Cc
Q 026722 215 SK 216 (234)
Q Consensus 215 ~~ 216 (234)
|.
T Consensus 555 Rv 556 (592)
T KOG2489|consen 555 RV 556 (592)
T ss_pred hh
Confidence 54
No 26
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=78.81 E-value=7.3 Score=27.55 Aligned_cols=42 Identities=12% Similarity=0.335 Sum_probs=33.6
Q ss_pred CccccchHHHHHHHHhHHHHHHHhhhcCCeeeecchhhHHHH
Q 026722 157 SVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLGVPNGTGFLL 198 (234)
Q Consensus 157 s~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l 198 (234)
.-+.+|..--..+.+.+.+=.+||+..+|...++....|.+.
T Consensus 24 k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 24 KKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 334578777788999999999999999999877767666653
No 27
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=73.87 E-value=8.7 Score=27.17 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHH
Q 026722 18 LMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILV 77 (234)
Q Consensus 18 ~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l 77 (234)
....--+-|-..-.|+|.+. ++..-...+...+.+=+.||+.++|+ ..+....+|.+.
T Consensus 8 lF~~Rf~~QW~~SEk~k~sv-~P~~FW~lSl~Gs~lll~Y~i~r~Dp-V~ilgq~~gl~i 65 (72)
T PF07578_consen 8 LFSSRFIVQWIYSEKAKKSV-VPVAFWYLSLIGSLLLLIYAIIRKDP-VFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHHHHHcCh-HHHHHHhcChHH
Confidence 44444566666666666533 33333467889999999999999994 344444555444
No 28
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=73.72 E-value=27 Score=31.53 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=66.1
Q ss_pred HhhHHHHHHHHHhcCcCCccchhHH--------HHHHHHHHHHHHhc-ccCC--------cceeeeeh-----hhHHHHH
Q 026722 21 LAPVRTFWRIIKHRSTEEFQSLPYI--------CTLLNSSLWTYYGI-TRPG--------SYLVATVN-----GFGILVE 78 (234)
Q Consensus 21 lSplp~i~~i~k~kst~~~s~~p~~--------~~~~n~~lW~~YG~-l~~d--------~~~v~~~N-----~~G~~l~ 78 (234)
.|--||++.-+|+||+.++|+=-.. -+..|+.+ .|.. ++++ ..|+ ..| .=|+++.
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~l--y~~~~iq~~y~~~~p~g~~pv-~~nDv~fslHa~lmt 213 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLL--YYCPKIQNQYDTSYPLGVPPV-TLNDVVFSLHAVLMT 213 (372)
T ss_pred eeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHH--HhcHHhccceeccCCCCCCcc-chhhhhhhHHHHHHH
Confidence 3457999999999999988753221 12233322 1111 1111 1121 112 3355666
Q ss_pred HHhhhhheeeccchHHHHHH-HHHHHHHHHHHHHHHHHHHHh-cccch----hHHHHHHhHHHHHHHHHhhhhhhhhhHH
Q 026722 79 AVYVTLFFIYAPTKAMRAKT-AIIFGILDVGFLGAAIAATRL-ALEGE----ARIDAIGFMCAGLNIIMYASPLSAMKTV 152 (234)
Q Consensus 79 ~~~~~v~~~y~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~~~----~~~~~~G~~~~~~~i~~~~sPl~~i~~v 152 (234)
.+.+.-++.|.+..+ |... +. +++.. +...+....+. ....+ +-...+-.+=...+++=| +||...-
T Consensus 214 ~Iti~Qc~~yeR~~q-~vs~~ia-lgil~--i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKY---iPQa~mN 286 (372)
T KOG3145|consen 214 VITILQCFFYERGWQ-RVSKGIA-LGILA--IFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKY---IPQAYMN 286 (372)
T ss_pred HHHHHHHHhhhhccc-ccchhHH-HHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHhhc
Confidence 666666666665544 3222 21 22211 11111111111 11111 222334444455566666 8999999
Q ss_pred hhCCCccccch
Q 026722 153 VTTKSVEFMPF 163 (234)
Q Consensus 153 i~tks~~~~~~ 163 (234)
.+.||+++-|.
T Consensus 287 ~tRKSt~gwsI 297 (372)
T KOG3145|consen 287 FTRKSTVGWSI 297 (372)
T ss_pred ceecccccccc
Confidence 99999998764
No 29
>PF15102 TMEM154: TMEM154 protein family
Probab=72.42 E-value=5.6 Score=31.95 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=20.1
Q ss_pred eeeecchhhHHHHHHHHHHhheeecCCCCCc
Q 026722 186 IFLGVPNGTGFLLGTAQLVLYAIYRNAKPSK 216 (234)
Q Consensus 186 ~~v~i~N~~g~~l~~~ql~l~~~y~~~~~~~ 216 (234)
..|++|-+++.++-+.-+++..+|+|++.|+
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 3577887777666666667767776555443
No 30
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=71.82 E-value=6.9 Score=33.39 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhheee
Q 026722 19 MFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFIY 88 (234)
Q Consensus 19 ~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~~y 88 (234)
...|-++|+.+-.|+|++|+.|.......+..|..=..|.....+.+.+...-....+++..-..-.++|
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y 222 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRY 222 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999877654545554555555554443333333
No 31
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=54.24 E-value=2.3e+02 Score=28.04 Aligned_cols=51 Identities=14% Similarity=0.402 Sum_probs=38.0
Q ss_pred HHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHh
Q 026722 20 FLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVY 81 (234)
Q Consensus 20 ~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~ 81 (234)
+..|+..+-+++-.=+-++++|.|+++.++ ++.||.+.+|.- -|+++.++-
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFGmM~gD~G-------yGLil~l~~ 375 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFGMMLGDAG-------YGLLLLLIG 375 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHHHHHHhHH-------HHHHHHHHH
Confidence 356788888888888888999999887654 789999999942 455555533
No 32
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=53.15 E-value=32 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhh
Q 026722 45 ICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYV 82 (234)
Q Consensus 45 ~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~ 82 (234)
.....++.+|+.|+++.+++ +....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~-~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSW-GGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHH
Confidence 56899999999999999995 46777777766665543
No 33
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=48.65 E-value=30 Score=31.50 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhheeeccchH
Q 026722 41 SLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFIYAPTKA 93 (234)
Q Consensus 41 ~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~~y~~~~~ 93 (234)
..|..+...-+..|.-|....+. +.++..|.+|..++..-++.++.+++++.
T Consensus 243 LvPPa~~~Gi~la~g~~~~a~ga-~~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 243 LLPPAVATGILLVISPLPLAVKS-LILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred hhchHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 44555566666666666666665 44789999999999988888888877654
No 34
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=42.53 E-value=3.2e+02 Score=26.31 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=47.8
Q ss_pred chhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhcCCeeee-------cchhhH
Q 026722 123 GEARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLVRDIFLG-------VPNGTG 195 (234)
Q Consensus 123 ~~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~~d~~v~-------i~N~~g 195 (234)
+++....+|-.....++....--+. -++++|+......-....+...+.+..-...-+..++..-. -|=.+.
T Consensus 314 ~~~ysafmG~~~~~tGivtii~~~l-~~~iir~~GW~~~AlitPiv~lit~~~FF~~~~f~~~~~~~~~~~~~~~pl~la 392 (491)
T PF03219_consen 314 PNDYSAFMGKFSSWTGIVTIIMMFL-SSNIIRRFGWRTAALITPIVILITGLLFFGFILFNNSLGPIVASLFGTSPLMLA 392 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhccchHHHH
Confidence 3455556665444333332211112 26888888776554444444444443333222222221111 111123
Q ss_pred HHHHHHHHHh-----heeecCCCCCccccCCcccccccC
Q 026722 196 FLLGTAQLVL-----YAIYRNAKPSKNAANSMEEGAQHE 229 (234)
Q Consensus 196 ~~l~~~ql~l-----~~~y~~~~~~~~~~~~~~~~~~~~ 229 (234)
..+|.+|-++ |..++..|+-.-.+-+.|.+-++.
T Consensus 393 v~~G~i~~v~~K~~kYs~fd~~kEm~yipld~e~k~k~K 431 (491)
T PF03219_consen 393 VFFGAIQNVLSKSAKYSLFDPTKEMAYIPLDPESKYKGK 431 (491)
T ss_pred HHHHHHHHHHHhhcceeecchhhhhhcccCCHHHHhhcc
Confidence 4445555443 445556666655555555554443
No 35
>PHA03049 IMV membrane protein; Provisional
Probab=42.18 E-value=26 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhheeecCCCCC
Q 026722 194 TGFLLGTAQLVLYAIYRNAKPS 215 (234)
Q Consensus 194 ~g~~l~~~ql~l~~~y~~~~~~ 215 (234)
++++..++-+++|.+|.|.+.-
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4566678888999999875443
No 36
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=41.59 E-value=2e+02 Score=27.30 Aligned_cols=140 Identities=11% Similarity=0.131 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH-H--HHhcCcCCccchhHHHHHHHHHHHHHHhc-ccCC----cceeeeehhhHH
Q 026722 4 LSFYVGVIGNIISVLMFLAPVRTFWR-I--IKHRSTEEFQSLPYICTLLNSSLWTYYGI-TRPG----SYLVATVNGFGI 75 (234)
Q Consensus 4 ~~~~~g~la~i~si~~~lSplp~i~~-i--~k~kst~~~s~~p~~~~~~n~~lW~~YG~-l~~d----~~~v~~~N~~G~ 75 (234)
+...+...+.-.+..+++...|+-.+ + ..-|++|=++.+|++.+......+..-+= ++.+ ..-.-.-|.++.
T Consensus 261 wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~ 340 (466)
T KOG2532|consen 261 WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAF 340 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHH
Confidence 44455556666666777777887665 2 23466777889999998887776654441 2111 011345588888
Q ss_pred HHHHHhhhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc--chhHHHHHHhHHHHHHHHHhhhhhh
Q 026722 76 LVEAVYVTLFFIYAPTKAMRAKTAIIFGILDVGFLGAAIAATRL--ALE--GEARIDAIGFMCAGLNIIMYASPLS 147 (234)
Q Consensus 76 ~l~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--~~~~~~~~G~~~~~~~i~~~~sPl~ 147 (234)
....+.+.+--.-.++.+ ..... .+....++.+. ....+. ..+ ++-...++|..-.+.++..+.+|+.
T Consensus 341 ~~~ai~l~~l~~~~~~~~-~~a~~--~l~~~~~~~g~-~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 341 GGPAVFLLVLAFTSDEHR-LLAVI--LLTIAIGLSGF-NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHHHHHHeeeecCCCcc-hHHHH--HHHHHHHHccc-chhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887777666554333232 11111 11111111111 111111 111 2334567788888888888888865
No 37
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.14 E-value=1.5e+02 Score=22.05 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHH
Q 026722 1 MKDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAV 80 (234)
Q Consensus 1 ~d~~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~ 80 (234)
||.=.+++-+...+..++. .+-+.+|+-..-+-+..|.+......++=.++.++++|.- +..--..|.+.+..
T Consensus 1 ~~~~~~~~~y~t~~~ii~~------~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~-l~~~~~aG~laGlA 73 (93)
T PF06946_consen 1 MDFGKELLTYMTFLSIITP------ALVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGN-LALMAWAGGLAGLA 73 (93)
T ss_pred CchHHHHHHHHHHHHHHHH------HHHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHhhhh
Confidence 5555555555444433322 1344444423234578999998888888888888887632 23223457777777
Q ss_pred hhhhheeeccc
Q 026722 81 YVTLFFIYAPT 91 (234)
Q Consensus 81 ~~~v~~~y~~~ 91 (234)
-..++=.++++
T Consensus 74 aTGL~e~~t~r 84 (93)
T PF06946_consen 74 ATGLFEQFTNR 84 (93)
T ss_pred hhhHHHHHHhh
Confidence 77766555543
No 38
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=39.68 E-value=30 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhheeecCCCCC
Q 026722 194 TGFLLGTAQLVLYAIYRNAKPS 215 (234)
Q Consensus 194 ~g~~l~~~ql~l~~~y~~~~~~ 215 (234)
++++..++-+++|.+|.+.+..
T Consensus 8 i~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 5667778888999999876554
No 39
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=39.41 E-value=71 Score=28.04 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHHHhHHHHHHHHHhhh---hhhhhhHHh---hCCCccccchHHH--HHH-HHhHHHHHHHhhhcCCeeeecch
Q 026722 127 IDAIGFMCAGLNIIMYAS---PLSAMKTVV---TTKSVEFMPFMLS--FFF-FLNGGIWAFYALLVRDIFLGVPN 192 (234)
Q Consensus 127 ~~~~G~~~~~~~i~~~~s---Pl~~i~~vi---~tks~~~~~~~~~--~~~-~~~~~~W~~YG~~~~d~~v~i~N 192 (234)
.+++|...++++-++|++ |..-+++=- ...+.+.+++..+ ..- +.+.+.+.+|.+..+|.+-+=||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 488999999999999998 544443321 1224455554332 222 23334445566665555544443
No 40
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.63 E-value=39 Score=26.33 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=54.9
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhc--CCeeeecchhhHHHHHHHHHHh
Q 026722 128 DAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLV--RDIFLGVPNGTGFLLGTAQLVL 205 (234)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~--~d~~v~i~N~~g~~l~~~ql~l 205 (234)
.++|=++ -++-|+..+.+ -+||-+-++-+|..+.++-+....=|.+.. +|+.++.--........+|..=
T Consensus 28 HFWGPva------NwGlpiAal~D--mkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~R 99 (132)
T KOG1590|consen 28 HFWGPVA------NWGLPIAALVD--MKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSR 99 (132)
T ss_pred ccccchh------hccchHHHHHh--ccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHH
Confidence 4555544 56778887777 578888899999998888888887777776 7777776666677777788776
Q ss_pred heee
Q 026722 206 YAIY 209 (234)
Q Consensus 206 ~~~y 209 (234)
|..|
T Consensus 100 f~~~ 103 (132)
T KOG1590|consen 100 FLNY 103 (132)
T ss_pred HHHH
Confidence 6554
No 41
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=34.63 E-value=96 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=26.4
Q ss_pred HHhHHHHHHHhhhc---CCeeeecchhhHHHHHHHHHHhheeec
Q 026722 170 FLNGGIWAFYALLV---RDIFLGVPNGTGFLLGTAQLVLYAIYR 210 (234)
Q Consensus 170 ~~~~~~W~~YG~~~---~d~~v~i~N~~g~~l~~~ql~l~~~y~ 210 (234)
.+.+-.|.-||++- ++..--+-|.+|+.+.++-..+|..-+
T Consensus 93 ~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 93 CLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred HHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 33334444477664 444444459999999999988875543
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.62 E-value=19 Score=28.08 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=9.2
Q ss_pred HHHHHHHhheeecCCCCCccccCCcccc
Q 026722 198 LGTAQLVLYAIYRNAKPSKNAANSMEEG 225 (234)
Q Consensus 198 l~~~ql~l~~~y~~~~~~~~~~~~~~~~ 225 (234)
++++-++.|++.|++|+.+....+.++.
T Consensus 78 Ig~Illi~y~irR~~Kk~~~~~~p~P~~ 105 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSSDVQPLPEE 105 (122)
T ss_dssp HHHHHHHHHHHHHHS-------------
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 4455566777766555544444443333
No 43
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.16 E-value=23 Score=31.68 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhee-ecCCCCC
Q 026722 195 GFLLGTAQLVLYAI-YRNAKPS 215 (234)
Q Consensus 195 g~~l~~~ql~l~~~-y~~~~~~ 215 (234)
=+++.++-+++|.| |+|+|++
T Consensus 268 llil~vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 268 LIILTVVLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 34567777888854 7787775
No 44
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=30.46 E-value=6.5e+02 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhcccCC-cceeeeehhhHHH
Q 026722 45 ICTLLNSSLWTYYGITRPG-SYLVATVNGFGIL 76 (234)
Q Consensus 45 ~~~~~n~~lW~~YG~l~~d-~~~v~~~N~~G~~ 76 (234)
.-..+.|++|.+|=.+..- -|...++-.++++
T Consensus 86 ~YI~~~~l~W~lYfav~~rs~fi~~~~~slc~l 118 (1318)
T KOG3618|consen 86 FYIGFACLLWSLYFAVHMRSRFIVMVAPSLCFL 118 (1318)
T ss_pred HHHHHHHHHHHHHheeccCceeeeehHHHHHHH
Confidence 3456778999999865543 2545555555544
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=27.39 E-value=1.7e+02 Score=25.17 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=37.6
Q ss_pred cchhHHHHHHhHHHHHHHHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhH
Q 026722 122 EGEARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNG 173 (234)
Q Consensus 122 ~~~~~~~~~G~~~~~~~i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~ 173 (234)
+.+...+.+|..|++.+..|-+-.=...|+++.+.|..+.+.-|+..+++|-
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 4455667888888888877766555667888888888777777776666664
No 46
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=2.4e+02 Score=23.90 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=40.4
Q ss_pred hhhhhhhhHHhhCCCccccchHHH----HHHHHhHHHHHHHhhhcCCeeeecchhhHHHHHHHHHHhh
Q 026722 143 ASPLSAMKTVVTTKSVEFMPFMLS----FFFFLNGGIWAFYALLVRDIFLGVPNGTGFLLGTAQLVLY 206 (234)
Q Consensus 143 ~sPl~~i~~vi~tks~~~~~~~~~----~~~~~~~~~W~~YG~~~~d~~v~i~N~~g~~l~~~ql~l~ 206 (234)
.|=|||++..-|++.+|++-..-. +.=++-+.-| +|-...+|.+- .+.++.|++|-.+|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~~----~iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFWD----PIAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc----chHHHHHHHHHHHH
Confidence 345899999999999999865433 3445556666 45666677433 24566777888876
No 47
>PHA00726 hypothetical protein
Probab=26.44 E-value=41 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhheeecCCCCCccc
Q 026722 194 TGFLLGTAQLVLYAIYRNAKPSKNA 218 (234)
Q Consensus 194 ~g~~l~~~ql~l~~~y~~~~~~~~~ 218 (234)
++..+..+-+..-..||++||+++.
T Consensus 11 i~l~fD~i~l~~sLLFRKpK~k~~~ 35 (89)
T PHA00726 11 IVLVFDTIMLTTALLFRKPKPKKVK 35 (89)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhh
Confidence 4555666666666677777666544
No 48
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=26.20 E-value=2.7e+02 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=8.4
Q ss_pred eecchhhHHHHHHH
Q 026722 188 LGVPNGTGFLLGTA 201 (234)
Q Consensus 188 v~i~N~~g~~l~~~ 201 (234)
.+.-|.+..++.+.
T Consensus 171 ~f~inalsfl~~i~ 184 (524)
T PF05977_consen 171 AFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 34557777766544
No 49
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.95 E-value=75 Score=19.83 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhheeecCCC
Q 026722 195 GFLLGTAQLVLYAIYRNAK 213 (234)
Q Consensus 195 g~~l~~~ql~l~~~y~~~~ 213 (234)
|.+.-+.-+++|++|+|+|
T Consensus 22 ~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred HHHHHHHHHHhheEEeccC
Confidence 4444445556677787764
No 50
>PTZ00370 STEVOR; Provisional
Probab=25.89 E-value=24 Score=31.55 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhee-ecCCCCC
Q 026722 194 TGFLLGTAQLVLYAI-YRNAKPS 215 (234)
Q Consensus 194 ~g~~l~~~ql~l~~~-y~~~~~~ 215 (234)
+=+++.++-+++|.| |+|+|++
T Consensus 263 vllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcch
Confidence 334567777888854 7787775
No 51
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=25.89 E-value=5.1e+02 Score=23.63 Aligned_cols=52 Identities=4% Similarity=-0.075 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhheeeccchH
Q 026722 42 LPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFIYAPTKA 93 (234)
Q Consensus 42 ~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~~y~~~~~ 93 (234)
..|+.....+.+=...|++.|+...++-+=.++=.++-..-..+-.-..|++
T Consensus 114 ~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~~ 165 (325)
T TIGR00341 114 KGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIHGFAVNLSVGDVK 165 (325)
T ss_pred HhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHHHHHHHHHcCcHH
Confidence 4566666667777889999998543443334444444444444443334443
No 52
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.73 E-value=3.7e+02 Score=26.78 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhh
Q 026722 3 DLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYV 82 (234)
Q Consensus 3 ~~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~ 82 (234)
.+..++|.+|-+. +..=-+-|-....|+|.. .++..-...++..+.+=+.|+..++|+. .+..+..|.+...=-+
T Consensus 138 ~~~~~~G~~~q~~---f~~Rf~~Qw~~se~~~~s-~~p~~FW~~s~~G~~~~l~Y~i~r~dpv-~i~g~~~g~~~y~rnl 212 (608)
T PRK01021 138 LSWHLIGCIGLTI---FSLRFFIQWFYLEYNNQS-ALPALFWKASLLGGSLALLYFIRTGDPV-NILCYGCGLFPSLANL 212 (608)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHhHHHHHHHHHHhCCce-EEEccccchhHHHHHH
Confidence 3445566665553 333335555555555542 2333333678899999999999999954 5677889988876665
Q ss_pred hhhe
Q 026722 83 TLFF 86 (234)
Q Consensus 83 ~v~~ 86 (234)
.+..
T Consensus 213 ~li~ 216 (608)
T PRK01021 213 RIAY 216 (608)
T ss_pred HHHH
Confidence 4444
No 53
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=24.83 E-value=1.4e+02 Score=28.07 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhh
Q 026722 11 IGNIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYV 82 (234)
Q Consensus 11 la~i~si~~~lSplp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~ 82 (234)
++.+-++.=+++-=..+.-++|+||.+++|....+.-+++.+.=++|=+=.+-.+.|.+++.+|+++++.=+
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WKv 376 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWKV 376 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhheee
Confidence 344445556667778888999999999999999888888888777775322224668999999999987643
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.38 E-value=1.4e+02 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.512 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 026722 3 DLSFYVGVIGNIISVLMFLAP 23 (234)
Q Consensus 3 ~~~~~~g~la~i~si~~~lSp 23 (234)
.+..++|++|.++.+.++++.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHH
Confidence 345678888888777765443
No 55
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=22.66 E-value=3.1e+02 Score=23.56 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhH
Q 026722 128 DAIGFMCAGLNIIMYASPLSAMKT 151 (234)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPl~~i~~ 151 (234)
+.+|++...+.+.+..+|+..+..
T Consensus 187 R~~G~llmf~G~~~~~~~l~~l~~ 210 (248)
T PF07787_consen 187 RFIGWLLMFIGFFLLFSPLYTLVD 210 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888888888888777655
No 56
>PRK11387 S-methylmethionine transporter; Provisional
Probab=21.94 E-value=3.2e+02 Score=25.56 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcCC------------ccchhHHHHHHHHHHHHHHhcccCCcceeee
Q 026722 2 KDLSFYVGVIGNIISVLMFLAPVRTFWRIIKHRSTEE------------FQSLPYICTLLNSSLWTYYGITRPGSYLVAT 69 (234)
Q Consensus 2 d~~~~~~g~la~i~si~~~lSplp~i~~i~k~kst~~------------~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~ 69 (234)
|...+.+..+++......++.+.-...+.+|++..++ .+..|.+....+..++.....-..+ + .
T Consensus 361 ~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~---~ 436 (471)
T PRK11387 361 DTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQ-R---I 436 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHH-H---H
Q ss_pred ehhhHHHHHHHhhhhheeeccchHHHHHH
Q 026722 70 VNGFGILVEAVYVTLFFIYAPTKAMRAKT 98 (234)
Q Consensus 70 ~N~~G~~l~~~~~~v~~~y~~~~~~~~~~ 98 (234)
....|..+-..-...|..++++++ |..+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 464 (471)
T PRK11387 437 ALWCGIPFVALCYGAYYLTQRLKR-NMTQ 464 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-cccH
No 57
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=21.87 E-value=6.1e+02 Score=23.09 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=29.6
Q ss_pred hHHhhCCCccccchHHHHHHHHhHHHHH-HHhhhcCCeeeecchhhHHHHHHHHHHhheeecC
Q 026722 150 KTVVTTKSVEFMPFMLSFFFFLNGGIWA-FYALLVRDIFLGVPNGTGFLLGTAQLVLYAIYRN 211 (234)
Q Consensus 150 ~~vi~tks~~~~~~~~~~~~~~~~~~W~-~YG~~~~d~~v~i~N~~g~~l~~~ql~l~~~y~~ 211 (234)
.-++|.-++..+++.+ +.+-.|. +.|+...+...-..-.+|.++-++=+++|..-++
T Consensus 251 p~~l~~ssAt~~nLsL-----LTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSL-----LTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHhCccceeehHH-----HHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 3456666665555533 3344453 5555554444433345666655555555555443
No 58
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=21.79 E-value=1.5e+02 Score=21.39 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHhhhhhhhhhHHhhCCCccccchHHHHHHHHhHHHHHHHhhhc
Q 026722 139 IIMYASPLSAMKTVVTTKSVEFMPFMLSFFFFLNGGIWAFYALLV 183 (234)
Q Consensus 139 i~~~~sPl~~i~~vi~tks~~~~~~~~~~~~~~~~~~W~~YG~~~ 183 (234)
+..++-|.-+=.+++|+++.+..--. ..-|.+||...
T Consensus 11 ~i~~~yP~~~s~kal~~~~~~~~~~w--------L~YWiv~~~~~ 47 (94)
T PF03134_consen 11 LIGILYPAYKSFKALKSKDKKDLKQW--------LTYWIVYGLFT 47 (94)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHH--------HHHHHHHHHHH
Confidence 33455677777788888887633222 23477777765
No 59
>COG3952 Predicted membrane protein [Function unknown]
Probab=20.50 E-value=4e+02 Score=20.36 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHHhcccCCcceeeeehhhHHHHHHHhhhhhee
Q 026722 33 HRSTEEFQSLPYICTLLNSSLWTYYGITRPGSYLVATVNGFGILVEAVYVTLFFI 87 (234)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~~~~v~~~ 87 (234)
+++...++..-.-++++...+-+.|-.-++|.. -+..|+.|++..+.-+.+..+
T Consensus 50 ~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV-~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 50 HANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPV-FVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred hcCCCcchHHHHHHHHHhhHHHHHHHHHhcchH-HHHHHhhhHHHHHHHHHHHHH
Confidence 333444444334568888999999999999953 356678888877766655543
No 60
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=20.31 E-value=7.1e+02 Score=23.21 Aligned_cols=14 Identities=14% Similarity=-0.124 Sum_probs=7.5
Q ss_pred HHhHHHHHHHhhhc
Q 026722 170 FLNGGIWAFYALLV 183 (234)
Q Consensus 170 ~~~~~~W~~YG~~~ 183 (234)
-.-+++|..+....
T Consensus 406 ~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 406 GGLGFVGSALAFVL 419 (474)
T ss_pred HHHHHHHHHHHHhe
Confidence 33445566666554
Done!