Query 026722
Match_columns 234
No_of_seqs 176 out of 1467
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 30.8 1.6E+02 0.0055 26.0 8.1 19 128-146 368-386 (511)
2 3l1l_A Arginine/agmatine antip 30.1 2.2E+02 0.0074 24.5 8.6 21 195-215 413-433 (445)
3 4gc0_A D-xylose-proton symport 11.7 3.1E+02 0.011 23.4 5.3 21 204-226 458-478 (491)
4 2nr1_A NR1 M2, M2; receptor, s 10.3 1.2E+02 0.004 16.5 1.2 14 171-184 9-22 (27)
5 3bkd_A Transmembrane domain of 10.0 41 0.0014 17.9 -0.7 14 184-197 2-15 (26)
6 3tlw_A GLR4197 protein, GLIC; 6.7 1E+03 0.035 19.5 8.9 15 72-86 207-221 (321)
7 2ljb_A M2 protein, BM2 protein 5.8 90 0.0031 17.9 -0.6 14 184-197 6-19 (35)
8 2knc_A Integrin alpha-IIB; tra 5.3 6.5E+02 0.022 15.7 4.7 15 160-174 9-23 (54)
9 2k9p_A Pheromone alpha factor 5.1 2.4E+02 0.0082 19.2 1.1 23 187-209 49-71 (80)
10 3tij_A NUPC family protein; me 4.8 1.2E+03 0.04 20.9 5.7 67 71-141 12-84 (424)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=30.80 E-value=1.6e+02 Score=25.95 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=9.4
Q ss_pred HHHHhHHHHHHHHHhhhhh
Q 026722 128 DAIGFMCAGLNIIMYASPL 146 (234)
Q Consensus 128 ~~~G~~~~~~~i~~~~sPl 146 (234)
+.+.-+++......|..+.
T Consensus 368 ~~l~~~~~~~~~~~y~~~~ 386 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLF 386 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555553
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=30.15 E-value=2.2e+02 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhheeecCCCCC
Q 026722 195 GFLLGTAQLVLYAIYRNAKPS 215 (234)
Q Consensus 195 g~~l~~~ql~l~~~y~~~~~~ 215 (234)
|...-+.=+..|..+++++++
T Consensus 413 ~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 413 SFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 444444445566665554443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=11.75 E-value=3.1e+02 Score=23.44 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=10.4
Q ss_pred HhheeecCCCCCccccCCccccc
Q 026722 204 VLYAIYRNAKPSKNAANSMEEGA 226 (234)
Q Consensus 204 ~l~~~y~~~~~~~~~~~~~~~~~ 226 (234)
..++..|.+|.| +.|++|+..
T Consensus 458 ~~~~~~PETkg~--tLeei~~~f 478 (491)
T 4gc0_A 458 FMWKFVPETKGK--TLEELEALW 478 (491)
T ss_dssp HHHHHCCCCTTC--CHHHHGGGT
T ss_pred HHHheecCCCCC--CHHHHHHHh
Confidence 344556665554 334455533
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=10.32 E-value=1.2e+02 Score=16.46 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=9.8
Q ss_pred HhHHHHHHHhhhcC
Q 026722 171 LNGGIWAFYALLVR 184 (234)
Q Consensus 171 ~~~~~W~~YG~~~~ 184 (234)
+.+.+|+.+|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 34567999888753
No 5
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=10.02 E-value=41 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=10.6
Q ss_pred CCeeeecchhhHHH
Q 026722 184 RDIFLGVPNGTGFL 197 (234)
Q Consensus 184 ~d~~v~i~N~~g~~ 197 (234)
+|..+..+|.+|+.
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57777788888874
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=6.71 E-value=1e+03 Score=19.53 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=8.9
Q ss_pred hhHHHHHHHhhhhhe
Q 026722 72 GFGILVEAVYVTLFF 86 (234)
Q Consensus 72 ~~G~~l~~~~~~v~~ 86 (234)
....++.+.-...||
T Consensus 207 iP~~li~~ls~~sF~ 221 (321)
T 3tlw_A 207 LPMLFILFISWTAFW 221 (321)
T ss_dssp HHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHhheeec
Confidence 445566666666666
No 7
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=5.78 E-value=90 Score=17.86 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=10.8
Q ss_pred CCeeeecchhhHHH
Q 026722 184 RDIFLGVPNGTGFL 197 (234)
Q Consensus 184 ~d~~v~i~N~~g~~ 197 (234)
+|..++.+|++|+.
T Consensus 6 sDplviaA~IigiL 19 (35)
T 2ljb_A 6 SDPLVVAASIIGIL 19 (35)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 67777888888874
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.30 E-value=6.5e+02 Score=15.72 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=9.0
Q ss_pred ccchHHHHHHHHhHH
Q 026722 160 FMPFMLSFFFFLNGG 174 (234)
Q Consensus 160 ~~~~~~~~~~~~~~~ 174 (234)
.+|.+..+.+.+.++
T Consensus 9 ~vp~wiIi~svl~GL 23 (54)
T 2knc_A 9 AIPIWWVLVGVLGGL 23 (54)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH
Confidence 466666666655554
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=5.07 E-value=2.4e+02 Score=19.22 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=13.9
Q ss_pred eeecchhhHHHHHHHHHHhheee
Q 026722 187 FLGVPNGTGFLLGTAQLVLYAIY 209 (234)
Q Consensus 187 ~v~i~N~~g~~l~~~ql~l~~~y 209 (234)
++++-|....++.++...++..|
T Consensus 49 piF~lN~~~L~l~iirs~l~~~y 71 (80)
T 2k9p_A 49 PIFIINQVSLFLIILHSALYFKY 71 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666554
No 10
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=4.76 E-value=1.2e+03 Score=20.91 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhheeeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHhHHHHHHHHH
Q 026722 71 NGFGILVEAVYVTLFFIYAPTKAM-RAKTAIIFGILDVGFLGAAIAATRLALE-----GEARIDAIGFMCAGLNIIM 141 (234)
Q Consensus 71 N~~G~~l~~~~~~v~~~y~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~G~~~~~~~i~~ 141 (234)
+.+|++. ++.+-|..+++||+ +.|+...-+..+. .++.+.+.+-.+.+ .+...+.+++.........
T Consensus 12 sl~Gi~v---~l~ia~l~S~nrk~I~wr~V~~gl~lQ~-~la~~vL~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvF 84 (424)
T 3tij_A 12 SLIGMAV---LLGIAVLLSSNRKAINLRTVGGAFAIQF-SLGAFILYVPWGQELLRGFSDAVSNVINYGNDGTSFLF 84 (424)
T ss_dssp HHHHHHH---HHHHHHHHCSCGGGCCHHHHHHHHHHHH-HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHhCCcccCChHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhChhhcC
Done!