Query 026722
Match_columns 234
No_of_seqs 176 out of 1467
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 20:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026722.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026722hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 22.5 52 0.0038 17.8 3.4 16 146-161 18-33 (37)
2 d1pv7a_ f.38.1.2 (A:) Lactose 19.6 20 0.0014 27.4 1.7 7 73-79 45-51 (417)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 17.9 19 0.0014 23.5 1.0 12 205-216 39-50 (91)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 9.3 80 0.0058 15.8 1.6 18 198-215 11-28 (30)
5 d1q90a3 f.23.23.1 (A:248-292) 7.6 91 0.0067 17.5 1.6 14 146-159 17-30 (45)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.2 1.3E+02 0.0096 14.6 1.5 10 50-59 4-13 (26)
7 d1rkla_ f.23.30.1 (A:) Oligosa 5.4 1.3E+02 0.0096 15.6 1.3 20 192-211 8-27 (36)
8 d1vi0a2 a.121.1.1 (A:78-194) H 4.2 4.3E+02 0.031 15.9 4.5 35 149-183 57-92 (117)
9 d1rh5b_ f.23.28.1 (B:) Preprot 3.9 3.5E+02 0.026 15.6 2.7 20 7-28 36-55 (56)
10 d2axtm1 f.23.35.1 (M:1-36) Pho 3.7 2.1E+02 0.015 15.1 1.3 15 70-84 3-17 (36)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.49 E-value=52 Score=17.83 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=11.1
Q ss_pred hhhhhHHhhCCCcccc
Q 026722 146 LSAMKTVVTTKSVEFM 161 (234)
Q Consensus 146 l~~i~~vi~tks~~~~ 161 (234)
+.|+--|+|+|..|-+
T Consensus 18 laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777654
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=19.65 E-value=20 Score=27.39 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 026722 73 FGILVEA 79 (234)
Q Consensus 73 ~G~~l~~ 79 (234)
+|.+.++
T Consensus 45 ~g~i~s~ 51 (417)
T d1pv7a_ 45 TGIIFAA 51 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444333
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=17.86 E-value=19 Score=23.51 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.7
Q ss_pred hheeecCCCCCc
Q 026722 205 LYAIYRNAKPSK 216 (234)
Q Consensus 205 l~~~y~~~~~~~ 216 (234)
..++||+++.++
T Consensus 39 ~~~ryR~~~~~~ 50 (91)
T d1fftb2 39 FAWKYRASNKDA 50 (91)
T ss_dssp TTTTTTTSTTTC
T ss_pred hheeeeccCCcc
Confidence 335565554443
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.33 E-value=80 Score=15.77 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=11.3
Q ss_pred HHHHHHHhheeecCCCCC
Q 026722 198 LGTAQLVLYAIYRNAKPS 215 (234)
Q Consensus 198 l~~~ql~l~~~y~~~~~~ 215 (234)
.+++-+..+.+|-++.|+
T Consensus 11 ac~i~lfffaiffreppr 28 (30)
T d2axtt1 11 ACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 455566667777666665
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.60 E-value=91 Score=17.48 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=6.3
Q ss_pred hhhhhHHhhCCCcc
Q 026722 146 LSAMKTVVTTKSVE 159 (234)
Q Consensus 146 l~~i~~vi~tks~~ 159 (234)
+.|+--|+|+|..|
T Consensus 17 laQi~LVLKKKQfE 30 (45)
T d1q90a3 17 LTQVLLVLKKKQFE 30 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444544443
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.17 E-value=1.3e+02 Score=14.59 Aligned_cols=10 Identities=0% Similarity=0.467 Sum_probs=5.4
Q ss_pred HHHHHHHHhc
Q 026722 50 NSSLWTYYGI 59 (234)
Q Consensus 50 n~~lW~~YG~ 59 (234)
+..+|+.|++
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455666554
No 7
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.39 E-value=1.3e+02 Score=15.64 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhheeecC
Q 026722 192 NGTGFLLGTAQLVLYAIYRN 211 (234)
Q Consensus 192 N~~g~~l~~~ql~l~~~y~~ 211 (234)
|.+.+.+|+.-+.+..+|..
T Consensus 8 n~~~i~fgi~mmtliviyh~ 27 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYHA 27 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHhh
Confidence 88889999999999888863
No 8
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=4.16 E-value=4.3e+02 Score=15.93 Aligned_cols=35 Identities=3% Similarity=-0.040 Sum_probs=27.1
Q ss_pred hhHHhhCCCcc-ccchHHHHHHHHhHHHHHHHhhhc
Q 026722 149 MKTVVTTKSVE-FMPFMLSFFFFLNGGIWAFYALLV 183 (234)
Q Consensus 149 i~~vi~tks~~-~~~~~~~~~~~~~~~~W~~YG~~~ 183 (234)
+++-++.+... ++++......+++.+-|.+|-++.
T Consensus 57 i~~g~~~G~ir~d~d~~~~a~~i~g~i~~~~~~w~~ 92 (117)
T d1vi0a2 57 LTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVM 92 (117)
T ss_dssp HHHHHHTTCBCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888885 689988888888888888764444
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.86 E-value=3.5e+02 Score=15.59 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 026722 7 YVGVIGNIISVLMFLAPVRTFW 28 (234)
Q Consensus 7 ~~g~la~i~si~~~lSplp~i~ 28 (234)
++|.+|.+.-+.+. |++.+.
T Consensus 36 i~G~IGf~I~li~~--~i~~ii 55 (56)
T d1rh5b_ 36 LLGIIGYIIHVPAT--YIKGIL 55 (56)
T ss_dssp HHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHH--Hhhhhc
Confidence 55667766665553 666553
No 10
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.70 E-value=2.1e+02 Score=15.07 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHhhhh
Q 026722 70 VNGFGILVEAVYVTL 84 (234)
Q Consensus 70 ~N~~G~~l~~~~~~v 84 (234)
+|..|++....++.+
T Consensus 3 vN~Lg~iAt~LFilv 17 (36)
T d2axtm1 3 VNQLGLIATALFVLV 17 (36)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Done!