BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026723
         (234 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CQB|A Chain A, Crystal Structure Of Heat Shock Protein Htpx Domain From
           Vibrio Parahaemolyticus Rimd 2210633
 pdb|3CQB|B Chain B, Crystal Structure Of Heat Shock Protein Htpx Domain From
           Vibrio Parahaemolyticus Rimd 2210633
          Length = 107

 Score = 37.0 bits (84), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 3   LENIGTSVLVSKNQLPE--LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 60
           L ++G  V+ S     E  L + +   A+   +  P + +  S   NA+          V
Sbjct: 9   LRSVGGXVIESPRNETEHWLLETVGRQAQQAGIGXPTVAIYDSADINAFATGAKRDDSLV 68

Query: 61  VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTF 96
            V T L+   TR E +AVLAHE+ H+     V  T 
Sbjct: 69  AVSTGLLHNXTRDEAEAVLAHEVSHIANGDXVTXTL 104


>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p
 pdb|4IL3|B Chain B, Crystal Structure Of S. Mikatae Ste24p
          Length = 461

 Score = 33.5 bits (75), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 41  RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 92
           ++S   NAY   +      +V+  +LV   +  E+ AVLAHE+GH + +H V
Sbjct: 257 KRSSHSNAYFTGLPFTSKRIVLFDTLVNSNSTDEITAVLAHEIGHWQKNHIV 308


>pdb|2YHG|A Chain A, Ab Initio Phasing Of A Nucleoside Hydrolase-Related
           Hypothetical Protein From Saccharophagus Degradans That
           Is Associated With Carbohydrate Metabolism
          Length = 437

 Score = 30.8 bits (68), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 20/93 (21%)

Query: 137 ALLVSQDPKVVISVLMKLAGGCPSLA----------DQLNVDAFLEQARSYDKASSSPVG 186
           A +   DP+ V +      GGC ++A           Q  +DAF+ + R YD       G
Sbjct: 136 AAVDKDDPRPVWATCW---GGCNTIAQAVWKVQNTRSQAQLDAFISKLRVYDILGQDNAG 192

Query: 187 -WYIRNAQTRQLSHPLLVLRAREIDAWSRSQDY 218
            W  +N         L+ +RAR + +W  S  Y
Sbjct: 193 TWLAKNFPN------LIYIRARSVYSWQPSDSY 219


>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
 pdb|3C37|B Chain B, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
          Length = 253

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 51  LAISGKKPFVVVHTSLVELLTRK-ELQAVLAHELGHLKCDHGV 92
            AI G +  V VHT L++    + EL  VLAHE+ H    HG 
Sbjct: 77  FAIPGGR--VYVHTGLLKAADNETELAGVLAHEINHAVARHGT 117


>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
           Deaminase, Mutant R115e
          Length = 193

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 13  SKNQL-PELHQLMTEAAEILNLEAPDLYVRQSPVPN-AYTLAISGKKPFVVVHT 64
           SKN++  EL+ ++  A    ++E   +YV  SP P+ A  +A SG K  V   T
Sbjct: 99  SKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCET 152


>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
 pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
 pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
 pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
           Metalloprotease Zmpste24 (Face1)
          Length = 482

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 73  KELQAVLAHELGHLKCDHGV 92
           +E+ AVL HELGH K  H V
Sbjct: 327 EEVLAVLGHELGHWKLGHTV 346


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,167,788
Number of Sequences: 62578
Number of extensions: 216723
Number of successful extensions: 654
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 6
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)