Query 026723
Match_columns 234
No_of_seqs 141 out of 1538
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04897 heat shock protein Ht 100.0 4.9E-36 1.1E-40 259.5 21.5 196 6-211 68-297 (298)
2 PRK02391 heat shock protein Ht 100.0 1.2E-35 2.5E-40 256.4 23.1 200 7-214 65-291 (296)
3 PRK03072 heat shock protein Ht 100.0 2E-35 4.3E-40 254.4 23.0 202 8-215 60-285 (288)
4 PRK03982 heat shock protein Ht 100.0 1.4E-35 3E-40 255.9 21.9 204 6-218 56-286 (288)
5 PRK01345 heat shock protein Ht 100.0 3.9E-35 8.4E-40 255.4 22.7 205 7-217 56-283 (317)
6 PRK03001 M48 family peptidase; 100.0 2.2E-35 4.8E-40 254.0 21.0 203 7-215 56-280 (283)
7 PRK01265 heat shock protein Ht 100.0 1.1E-34 2.3E-39 251.7 23.4 153 7-159 70-252 (324)
8 PRK02870 heat shock protein Ht 100.0 5.9E-34 1.3E-38 248.4 22.2 202 8-212 100-334 (336)
9 PRK05457 heat shock protein Ht 100.0 6E-33 1.3E-37 238.4 22.5 188 8-211 64-282 (284)
10 COG0501 HtpX Zn-dependent prot 100.0 2E-28 4.2E-33 212.3 18.7 181 19-216 100-300 (302)
11 PF01435 Peptidase_M48: Peptid 100.0 1.2E-29 2.7E-34 210.9 7.3 183 11-208 24-226 (226)
12 KOG2719 Metalloprotease [Gener 99.9 1.6E-24 3.4E-29 191.0 19.1 179 11-215 210-426 (428)
13 COG4783 Putative Zn-dependent 99.9 2.9E-22 6.2E-27 177.9 15.5 171 12-215 64-262 (484)
14 KOG2661 Peptidase family M48 [ 99.8 1.5E-20 3.4E-25 159.3 12.9 177 19-226 216-409 (424)
15 COG4784 Putative Zn-dependent 99.8 1.4E-19 3.1E-24 154.3 15.1 176 14-215 60-253 (479)
16 PF05569 Peptidase_M56: BlaR1 99.7 1.3E-15 2.9E-20 132.2 15.3 136 13-159 136-274 (299)
17 COG4219 MecR1 Antirepressor re 99.3 4E-11 8.7E-16 102.4 14.5 124 19-154 137-263 (337)
18 PF06114 DUF955: Domain of unk 98.0 8E-05 1.7E-09 54.9 9.8 73 57-155 28-100 (122)
19 PF04228 Zn_peptidase: Putativ 97.9 0.00011 2.3E-09 63.6 10.0 108 19-142 98-224 (292)
20 PF10463 Peptidase_U49: Peptid 97.8 4.4E-05 9.5E-10 62.5 5.4 42 73-141 99-140 (206)
21 PRK09672 phage exclusion prote 97.5 0.0002 4.3E-09 61.3 5.6 42 73-141 163-204 (305)
22 PF01863 DUF45: Protein of unk 97.3 0.00071 1.5E-08 55.3 6.6 68 20-92 114-181 (205)
23 COG1451 Predicted metal-depend 96.9 0.0046 9.9E-08 51.6 7.9 71 20-95 125-195 (223)
24 PRK04351 hypothetical protein; 96.7 0.0077 1.7E-07 47.0 7.4 65 17-86 3-72 (149)
25 smart00731 SprT SprT homologue 96.4 0.0076 1.7E-07 46.8 5.7 67 19-88 2-72 (146)
26 PF13203 DUF2201_N: Putative m 96.2 0.017 3.8E-07 49.9 7.0 48 43-94 32-79 (292)
27 PF10263 SprT-like: SprT-like 96.0 0.047 1E-06 42.6 8.1 31 59-89 44-74 (157)
28 PF13699 DUF4157: Domain of un 95.8 0.021 4.5E-07 39.7 4.6 60 24-89 7-75 (79)
29 PF10026 DUF2268: Predicted Zn 95.7 0.043 9.4E-07 44.7 7.0 72 19-91 4-81 (195)
30 PF04450 BSP: Peptidase of pla 95.2 0.11 2.4E-06 42.8 7.7 73 18-91 28-112 (205)
31 COG2321 Predicted metalloprote 94.9 0.088 1.9E-06 44.8 6.5 67 20-89 96-181 (295)
32 PRK04860 hypothetical protein; 94.9 0.11 2.3E-06 41.1 6.5 66 20-88 9-76 (160)
33 PF14247 DUF4344: Domain of un 94.7 0.67 1.4E-05 38.6 11.3 85 23-141 25-128 (220)
34 COG2856 Predicted Zn peptidase 93.6 0.054 1.2E-06 44.8 2.5 62 56-142 57-118 (213)
35 COG3091 SprT Zn-dependent meta 93.1 0.28 6E-06 38.1 5.6 66 18-88 5-74 (156)
36 COG3590 PepO Predicted metallo 91.0 0.049 1.1E-06 50.7 -0.8 46 41-89 446-501 (654)
37 PF02031 Peptidase_M7: Strepto 90.8 0.75 1.6E-05 34.8 5.4 38 46-88 53-90 (132)
38 COG4900 Predicted metallopepti 90.7 1 2.3E-05 33.1 5.9 73 16-89 5-94 (133)
39 PF12388 Peptidase_M57: Dual-a 90.4 0.31 6.7E-06 40.2 3.4 34 58-93 118-152 (211)
40 COG1164 Oligoendopeptidase F [ 90.4 0.3 6.5E-06 46.7 3.8 50 36-90 345-395 (598)
41 PF04298 Zn_peptidase_2: Putat 88.9 7.8 0.00017 32.3 10.5 65 22-91 41-105 (222)
42 TIGR00181 pepF oligoendopeptid 88.2 0.44 9.6E-06 45.3 3.2 44 41-90 349-393 (591)
43 PF13485 Peptidase_MA_2: Pepti 84.8 0.99 2.2E-05 32.9 3.0 31 58-91 11-41 (128)
44 PF08325 WLM: WLM domain; Int 84.1 4.9 0.00011 32.5 6.9 23 70-92 77-99 (186)
45 PF14891 Peptidase_M91: Effect 84.0 3.3 7.1E-05 33.0 5.8 17 72-88 100-116 (174)
46 PF00413 Peptidase_M10: Matrix 82.7 0.81 1.8E-05 35.2 1.8 20 71-90 101-121 (154)
47 COG4324 Predicted aminopeptida 82.5 2.4 5.3E-05 36.2 4.6 35 61-95 180-220 (376)
48 cd04279 ZnMc_MMP_like_1 Zinc-d 82.3 0.87 1.9E-05 35.4 1.8 16 72-87 101-116 (156)
49 cd04270 ZnMc_TACE_like Zinc-de 81.9 0.95 2.1E-05 38.2 2.1 18 71-88 163-180 (244)
50 cd04277 ZnMc_serralysin_like Z 81.1 2.9 6.3E-05 33.4 4.6 83 8-91 27-130 (186)
51 PF09768 Peptidase_M76: Peptid 81.1 3.1 6.7E-05 33.3 4.6 67 17-88 15-84 (173)
52 TIGR02289 M3_not_pepF oligoend 80.5 0.98 2.1E-05 42.7 1.8 44 41-90 307-352 (549)
53 cd04268 ZnMc_MMP_like Zinc-dep 80.0 1.2 2.5E-05 34.7 1.8 31 57-87 72-106 (165)
54 TIGR02414 pepN_proteo aminopep 80.0 2.7 5.8E-05 42.0 4.7 19 73-91 281-299 (863)
55 COG3864 Uncharacterized protei 79.7 2.5 5.4E-05 36.9 3.8 35 59-93 53-87 (396)
56 TIGR02412 pepN_strep_liv amino 79.6 3.8 8.1E-05 40.9 5.6 68 21-91 229-303 (831)
57 TIGR03793 TOMM_pelo TOMM prope 78.7 10 0.00022 26.1 6.0 55 16-80 15-76 (77)
58 PF01433 Peptidase_M1: Peptida 78.0 5.7 0.00012 35.3 5.9 69 20-91 234-311 (390)
59 PF13688 Reprolysin_5: Metallo 77.3 1.2 2.6E-05 35.8 1.2 17 71-87 138-154 (196)
60 cd06459 M3B_Oligoendopeptidase 76.9 2.2 4.7E-05 38.6 2.9 45 41-90 192-237 (427)
61 TIGR02290 M3_fam_3 oligoendope 76.4 2.6 5.6E-05 40.2 3.4 47 38-89 342-389 (587)
62 cd06460 M32_Taq Peptidase fami 75.8 6.1 0.00013 35.9 5.4 63 21-91 110-175 (396)
63 cd04269 ZnMc_adamalysin_II_lik 75.4 2.1 4.4E-05 34.5 2.1 16 72-87 128-143 (194)
64 PF01447 Peptidase_M4: Thermol 75.3 1.5 3.3E-05 34.2 1.2 42 42-88 106-148 (150)
65 PF01431 Peptidase_M13: Peptid 75.0 2.7 5.8E-05 34.2 2.7 36 57-92 8-53 (206)
66 PF13582 Reprolysin_3: Metallo 74.7 1.6 3.5E-05 32.2 1.2 12 76-87 108-119 (124)
67 PF01432 Peptidase_M3: Peptida 74.3 2.4 5.3E-05 38.9 2.5 46 43-89 197-256 (458)
68 PRK14015 pepN aminopeptidase N 73.1 5.6 0.00012 39.9 4.8 19 74-92 295-313 (875)
69 cd04278 ZnMc_MMP Zinc-dependen 72.8 1.9 4E-05 33.6 1.2 30 58-87 86-119 (157)
70 PF01421 Reprolysin: Reprolysi 72.5 3 6.5E-05 33.7 2.4 18 70-87 126-143 (199)
71 PF13574 Reprolysin_2: Metallo 72.5 1.9 4.2E-05 34.3 1.2 14 75-88 111-124 (173)
72 cd06455 M3A_TOP Peptidase M3 T 71.1 3.3 7.1E-05 38.4 2.6 46 43-89 216-277 (472)
73 PF10023 DUF2265: Predicted am 69.5 2.7 5.8E-05 37.2 1.5 32 63-94 150-187 (337)
74 cd04267 ZnMc_ADAM_like Zinc-de 69.1 2.3 4.9E-05 34.1 1.0 16 72-87 130-145 (192)
75 TIGR02421 QEGLA conserved hypo 67.4 9.4 0.0002 34.3 4.6 62 16-84 135-197 (366)
76 cd04272 ZnMc_salivary_gland_MP 67.2 3.2 6.9E-05 34.2 1.5 14 74-87 144-157 (220)
77 cd04271 ZnMc_ADAM_fungal Zinc- 67.0 1.9 4E-05 36.1 0.1 11 77-87 147-157 (228)
78 cd06258 Peptidase_M3_like The 66.9 5.6 0.00012 35.3 3.1 47 43-90 112-169 (365)
79 PF05572 Peptidase_M43: Pregna 66.7 3.1 6.8E-05 32.5 1.3 34 59-92 52-87 (154)
80 PF13583 Reprolysin_4: Metallo 66.3 2.9 6.4E-05 34.3 1.1 11 77-87 139-149 (206)
81 cd00203 ZnMc Zinc-dependent me 66.0 2.8 6E-05 32.6 0.8 16 72-87 93-108 (167)
82 KOG1046 Puromycin-sensitive am 64.9 15 0.00033 36.9 5.9 65 24-91 267-340 (882)
83 cd04276 ZnMc_MMP_like_2 Zinc-d 63.6 6.4 0.00014 32.2 2.6 30 58-87 92-128 (197)
84 KOG3314 Ku70-binding protein [ 61.9 24 0.00053 27.9 5.3 38 52-92 71-108 (194)
85 smart00235 ZnMc Zinc-dependent 61.8 4 8.7E-05 30.9 1.0 12 76-87 87-98 (140)
86 KOG3624 M13 family peptidase [ 60.5 7 0.00015 38.0 2.7 45 44-91 480-534 (687)
87 KOG1047 Bifunctional leukotrie 60.4 5.2 0.00011 37.6 1.7 32 57-90 271-303 (613)
88 COG2738 Predicted Zn-dependent 59.7 5.7 0.00012 32.4 1.6 66 23-93 45-110 (226)
89 PF01400 Astacin: Astacin (Pep 57.5 14 0.0003 29.9 3.5 66 16-88 20-92 (191)
90 cd06456 M3A_DCP_Oligopeptidase 56.3 11 0.00023 34.6 3.0 45 45-90 165-223 (422)
91 COG3930 Uncharacterized protei 54.8 26 0.00056 31.3 4.9 47 37-85 210-256 (434)
92 COG1905 NuoE NADH:ubiquinone o 54.3 31 0.00066 27.3 4.8 60 21-80 94-154 (160)
93 PF08014 DUF1704: Domain of un 53.5 25 0.00055 31.4 4.8 67 17-90 111-181 (349)
94 cd04327 ZnMc_MMP_like_3 Zinc-d 53.2 9.9 0.00021 30.8 2.0 16 73-88 90-105 (198)
95 cd03082 TRX_Fd_NuoE_W_FDH_beta 52.0 17 0.00036 24.5 2.7 53 21-80 18-70 (72)
96 PF02163 Peptidase_M50: Peptid 51.2 10 0.00022 30.3 1.8 14 75-88 7-20 (192)
97 cd04280 ZnMc_astacin_like Zinc 50.6 20 0.00043 28.7 3.4 68 13-88 13-87 (180)
98 PF06262 DUF1025: Possibl zinc 50.3 29 0.00063 25.0 3.8 34 58-91 50-89 (97)
99 cd04273 ZnMc_ADAMTS_like Zinc- 50.0 3 6.6E-05 34.0 -1.5 14 74-87 139-152 (207)
100 PF05548 Peptidase_M11: Gameto 49.3 39 0.00085 29.7 5.3 69 17-91 90-167 (314)
101 COG3824 Predicted Zn-dependent 48.6 11 0.00024 28.2 1.5 29 59-87 86-121 (136)
102 TIGR02411 leuko_A4_hydro leuko 48.4 11 0.00024 36.1 1.9 20 71-90 275-294 (601)
103 PF12315 DUF3633: Protein of u 47.7 13 0.00029 30.6 1.9 20 69-88 87-106 (212)
104 cd06161 S2P-M50_SpoIVFB SpoIVF 45.9 13 0.00029 30.4 1.8 14 74-87 37-50 (208)
105 PF14521 Aspzincin_M35: Lysine 45.7 41 0.00089 26.0 4.4 29 58-86 77-107 (148)
106 PF12725 DUF3810: Protein of u 44.8 12 0.00026 32.9 1.4 18 71-88 192-209 (318)
107 cd05709 S2P-M50 Site-2 proteas 44.4 15 0.00032 29.1 1.8 13 75-87 8-20 (180)
108 PF13402 M60-like: Peptidase M 43.8 1.1E+02 0.0024 26.1 7.4 31 60-90 200-234 (307)
109 COG0308 PepN Aminopeptidase N 43.0 49 0.0011 33.3 5.5 20 73-92 305-324 (859)
110 cd06164 S2P-M50_SpoIVFB_CBS Sp 42.6 16 0.00035 30.4 1.8 13 75-87 53-65 (227)
111 PRK05988 formate dehydrogenase 42.2 82 0.0018 24.6 5.6 56 21-80 92-152 (156)
112 cd06163 S2P-M50_PDZ_RseP-like 41.5 15 0.00033 29.5 1.4 13 76-88 10-22 (182)
113 PRK07571 bidirectional hydroge 39.3 78 0.0017 25.2 5.1 56 21-80 105-165 (169)
114 PF13398 Peptidase_M50B: Pepti 38.1 21 0.00046 29.1 1.8 16 73-88 20-35 (200)
115 TIGR03296 M6dom_TIGR03296 M6 f 38.1 7.6 0.00016 33.6 -0.9 12 76-87 166-177 (286)
116 cd06160 S2P-M50_like_2 Unchara 37.2 22 0.00049 28.6 1.8 14 74-87 40-53 (183)
117 COG5504 Predicted Zn-dependent 36.8 79 0.0017 27.0 4.9 29 59-89 126-154 (280)
118 cd03081 TRX_Fd_NuoE_FDH_gamma 35.4 1.3E+02 0.0028 20.4 5.2 55 21-80 18-78 (80)
119 PF04072 LCM: Leucine carboxyl 35.0 32 0.00069 27.3 2.3 30 52-81 152-181 (183)
120 PF09471 Peptidase_M64: IgA Pe 34.3 24 0.00052 30.2 1.6 16 72-87 213-228 (264)
121 PRK10911 oligopeptidase A; Pro 34.2 29 0.00064 33.8 2.3 20 70-90 459-478 (680)
122 cd06159 S2P-M50_PDZ_Arch Uncha 34.0 26 0.00056 30.0 1.7 14 74-87 117-130 (263)
123 KOG3658 Tumor necrosis factor- 33.6 10 0.00022 36.5 -0.8 30 58-87 369-404 (764)
124 PHA02456 zinc metallopeptidase 33.3 23 0.00049 26.2 1.1 28 59-90 67-94 (141)
125 PF06861 BALF1: BALF1 protein; 33.0 30 0.00065 27.6 1.8 23 70-92 127-149 (182)
126 TIGR00027 mthyl_TIGR00027 meth 32.6 1.3E+02 0.0028 25.6 5.7 71 10-81 105-182 (260)
127 cd04283 ZnMc_hatching_enzyme Z 32.4 22 0.00048 28.6 1.0 68 13-88 15-90 (182)
128 PRK13267 archaemetzincin-like 32.2 1.7E+02 0.0037 23.4 6.1 17 74-90 124-141 (179)
129 cd03083 TRX_Fd_NuoE_hoxF TRX-l 31.8 1.6E+02 0.0034 19.9 5.1 34 48-81 46-79 (80)
130 PF01457 Peptidase_M8: Leishma 31.8 42 0.0009 31.6 2.9 33 59-91 194-226 (521)
131 PRK11767 SpoVR family protein; 31.6 63 0.0014 30.3 3.9 70 18-87 18-121 (498)
132 cd06162 S2P-M50_PDZ_SREBP Ster 31.5 30 0.00065 29.9 1.7 14 75-88 135-148 (277)
133 cd04281 ZnMc_BMP1_TLD Zinc-dep 31.4 23 0.0005 29.0 1.0 14 76-89 88-101 (200)
134 PF02102 Peptidase_M35: Deuter 31.2 1.8E+02 0.004 26.1 6.7 67 19-88 229-310 (359)
135 PF02074 Peptidase_M32: Carbox 30.8 94 0.002 29.2 4.9 64 21-89 210-273 (494)
136 PF06884 DUF1264: Protein of u 30.6 65 0.0014 25.7 3.3 36 37-77 41-76 (171)
137 PF10460 Peptidase_M30: Peptid 28.9 42 0.00091 30.2 2.2 31 59-89 120-153 (366)
138 KOG3714 Meprin A metalloprotea 28.7 25 0.00055 32.0 0.8 13 76-88 160-172 (411)
139 COG4823 AbiF Abortive infectio 27.8 41 0.00088 28.8 1.8 14 72-85 89-102 (299)
140 KOG3607 Meltrins, fertilins an 26.8 36 0.00079 33.4 1.6 16 72-87 320-335 (716)
141 PRK12373 NADH dehydrogenase su 26.8 1.4E+02 0.0031 27.2 5.2 70 10-81 93-168 (400)
142 COG3315 O-Methyltransferase in 26.6 1.8E+02 0.0039 25.3 5.7 75 12-86 118-199 (297)
143 cd06158 S2P-M50_like_1 Unchara 26.4 43 0.00092 26.8 1.7 13 75-87 9-21 (181)
144 PF07805 HipA_N: HipA-like N-t 25.8 1.3E+02 0.0027 20.3 3.8 36 16-51 41-76 (81)
145 cd04275 ZnMc_pappalysin_like Z 25.1 11 0.00024 31.5 -2.0 32 60-91 120-154 (225)
146 cd06457 M3A_MIP Peptidase M3 m 24.9 31 0.00067 31.9 0.7 19 70-89 244-262 (458)
147 PF10462 Peptidase_M66: Peptid 24.4 42 0.00092 29.4 1.4 17 74-90 192-209 (305)
148 cd04282 ZnMc_meprin Zinc-depen 23.1 40 0.00086 28.3 0.9 13 76-88 121-133 (230)
149 COG4227 Antirestriction protei 23.1 40 0.00087 28.9 1.0 20 71-90 199-218 (316)
150 PRK07539 NADH dehydrogenase su 23.0 2.3E+02 0.0051 21.8 5.3 55 21-80 91-151 (154)
151 KOG1565 Gelatinase A and relat 22.8 36 0.00078 31.7 0.7 14 74-87 210-223 (469)
152 COG2317 Zn-dependent carboxype 22.3 1.8E+02 0.0038 27.2 4.9 63 22-89 211-273 (497)
153 COG4972 PilM Tfp pilus assembl 21.9 2.1E+02 0.0045 25.6 5.1 60 16-88 56-116 (354)
154 PLN02709 nudix hydrolase 21.1 1.2E+02 0.0026 25.3 3.4 77 11-88 75-154 (222)
155 COG3227 LasB Zinc metalloprote 21.0 28 0.0006 32.3 -0.4 13 78-90 340-352 (507)
156 PF14483 Cut8_M: Cut8 dimerisa 20.8 1E+02 0.0022 18.0 2.1 16 65-80 5-20 (38)
157 PF05299 Peptidase_M61: M61 gl 20.4 37 0.0008 25.5 0.2 18 74-91 3-20 (122)
158 TIGR00054 RIP metalloprotease 20.4 50 0.0011 30.1 1.1 13 76-88 15-27 (420)
159 PF10964 DUF2766: Protein of u 20.4 1.5E+02 0.0032 19.9 3.0 28 126-155 6-33 (79)
160 TIGR01958 nuoE_fam NADH-quinon 20.3 2.9E+02 0.0064 21.1 5.3 55 21-80 85-145 (148)
161 PF01434 Peptidase_M41: Peptid 20.1 87 0.0019 25.6 2.4 23 70-92 23-45 (213)
162 PF11350 DUF3152: Protein of u 20.0 53 0.0012 26.9 1.1 31 58-88 115-152 (203)
No 1
>PRK04897 heat shock protein HtpX; Provisional
Probab=100.00 E-value=4.9e-36 Score=259.46 Aligned_cols=196 Identities=22% Similarity=0.337 Sum_probs=143.7
Q ss_pred cCCceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhh
Q 026723 6 IGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 85 (234)
Q Consensus 6 ~~~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgH 85 (234)
..++++++|++.|+|++.++++|++.|++.|++|+++++.+|||++|.++.++.|+++++|++.++++|+++|||||+||
T Consensus 68 ~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgH 147 (298)
T PRK04897 68 MNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISH 147 (298)
T ss_pred hCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999877778999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHhhh----------hh------------h-HH---HH---HH---HHHH--HHHHHHHHHHHH
Q 026723 86 LKCDHGVWLTFANILTLGAYT----------IP------------G-IG---GM---IA---QSLE--EQLFRWLRAAEL 131 (234)
Q Consensus 86 i~~~h~~~~~~~~~l~~~~~~----------~~------------~-~~---~~---~~---~~~~--~~~~~~sR~~E~ 131 (234)
++++|..+.++...+.....+ .. + .. .+ +. ..+. ...+.+||.+||
T Consensus 148 i~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~ 227 (298)
T PRK04897 148 IRNYDIRLSTIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREY 227 (298)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999887755432211100 00 0 00 00 00 1111 122478999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHh
Q 026723 132 TCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA 211 (234)
Q Consensus 132 ~AD~~a~~~~~~~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~ 211 (234)
+||++|+++++||+++++||.|+...+.... +.+.. -+..+- .++ ++......|++|||++.+||++|++
T Consensus 228 ~AD~~A~~lt~~p~~La~AL~KL~~~~~~~~-~~~~~----~~~~~i---~~p--~~~~~~~~lfsTHP~~~eRI~~L~~ 297 (298)
T PRK04897 228 LADASSVELTRNPQGLISALEKISNSQPMKH-PVDDA----SAALYI---SDP--LKKKGLSKLFDTHPPIEERIERLKN 297 (298)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcccccc-ccChH----HHHhcc---CCC--cccchHHHHHcCCcCHHHHHHHHHc
Confidence 9999999999999999999999988754211 01100 000000 011 1100124679999999999999975
No 2
>PRK02391 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.2e-35 Score=256.37 Aligned_cols=200 Identities=29% Similarity=0.408 Sum_probs=146.7
Q ss_pred CCceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhh
Q 026723 7 GTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHL 86 (234)
Q Consensus 7 ~~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi 86 (234)
-++.+++|.+.|++++.++++|++.|++.|++|+++++.+|||++|.++.++.|+++++|++.++++|+++|+|||+||+
T Consensus 65 ~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlaHElgHi 144 (296)
T PRK02391 65 MGARIVSEDEYPELHAMVERLCALADLPKPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRLDPDELEAVLAHELSHV 144 (296)
T ss_pred cCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhCCHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999998666778999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHhhhh-------h--------h-HHHH----HHH----HH-HHHHHHHHHHHHHHHHHHHHHhc
Q 026723 87 KCDHGVWLTFANILTLGAYTI-------P--------G-IGGM----IAQ----SL-EEQLFRWLRAAELTCDRAALLVS 141 (234)
Q Consensus 87 ~~~h~~~~~~~~~l~~~~~~~-------~--------~-~~~~----~~~----~~-~~~~~~~sR~~E~~AD~~a~~~~ 141 (234)
+++|..+.++..++..+...+ . . .+.+ +.. .+ ....+.+||.+||+||++|++++
T Consensus 145 ~~~di~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~SR~rE~~AD~~Aa~lt 224 (296)
T PRK02391 145 KNRDVAVMTIASFLSTIAFLIVRWGFYFGGFGGRGGGGGGGGILVVILVSLVVWAISFLLIRALSRYREFAADRGAAIIT 224 (296)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 999999877654433221100 0 0 0000 111 11 11235789999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCcccccCHHHHH--HHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhh
Q 026723 142 QDPKVVISVLMKLAGGCPSLADQLNVDAFL--EQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSR 214 (234)
Q Consensus 142 ~~~~~~~~aL~kl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~ 214 (234)
+||+++++||.|+..+....+. ++.- .......-..+.+.+++ ..|++|||++.+||++|++...
T Consensus 225 g~p~~LasAL~KL~~~~~~~~~----~~~~~~~~~~~~~i~p~~~~~~~----~~l~sTHP~~~eRI~~L~~~~~ 291 (296)
T PRK02391 225 GRPSALASALMKISGRMDRVPT----EDLREAEGMNAFFIIPALSGGSL----GRLFSTHPPLEKRIAQLEKLER 291 (296)
T ss_pred CCHHHHHHHHHHHHcccccCCc----hhhcccHHHhhhcccCCCCcchH----HHHhcCCcCHHHHHHHHHHHHH
Confidence 9999999999999986432211 1100 00111100001011233 3689999999999999997653
No 3
>PRK03072 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2e-35 Score=254.43 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=145.5
Q ss_pred CceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhh
Q 026723 8 TSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 87 (234)
Q Consensus 8 ~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~ 87 (234)
++.+++|.+.|+|++.++++|++.|++.|++|+++++.+|||++|..+++..|+++++|++.++++|+++|||||+||++
T Consensus 60 ~~~~v~~~~~p~L~~~v~~la~~~g~p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~ 139 (288)
T PRK03072 60 HAQPVSEVQAPAMYRIVRELSTAARQPMPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQILNERELRGVLGHELSHVY 139 (288)
T ss_pred CCEECChhhhHHHHHHHHHHHHHcCCCCCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999965555679999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhh-------hh-----------hh-HHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q 026723 88 CDHGVWLTFANILTLGAY-------TI-----------PG-IGGMIAQ----SL-EEQLFRWLRAAELTCDRAALLVSQD 143 (234)
Q Consensus 88 ~~h~~~~~~~~~l~~~~~-------~~-----------~~-~~~~~~~----~~-~~~~~~~sR~~E~~AD~~a~~~~~~ 143 (234)
++|.++.++...+..... .. +. ++.++.. .. ....+.+||.+||+||++|++++++
T Consensus 140 ~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SR~rE~~AD~~A~~l~~~ 219 (288)
T PRK03072 140 NRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQLAISRSREYQADESGAELTGD 219 (288)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHhCC
Confidence 999998776543221100 00 00 1111111 11 1123579999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhh
Q 026723 144 PKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRS 215 (234)
Q Consensus 144 ~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~ 215 (234)
|++++++|.|+...+...+.. +...-.+.+ .+.-.++.+.+++ ..+++|||++.+||++|++...+
T Consensus 220 p~~La~AL~KL~~~~~~~~~~-~~~~~~~~~-~~~i~~p~~~~~~----~~l~sTHP~~~eRI~~L~~~~~~ 285 (288)
T PRK03072 220 PLALASALRKISGGVQAAPLP-PEPQLASQA-HLMIANPFRAGGI----GRLFSTHPPMADRIARLEQMAGR 285 (288)
T ss_pred HHHHHHHHHHHHhccccCCCC-ccccchhhh-hhhhcCcccchHH----HHHHcCCcCHHHHHHHHHHHhhh
Confidence 999999999998865422110 000000011 1100011111223 46799999999999999987643
No 4
>PRK03982 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.4e-35 Score=255.90 Aligned_cols=204 Identities=23% Similarity=0.271 Sum_probs=148.8
Q ss_pred cCCceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhh
Q 026723 6 IGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 85 (234)
Q Consensus 6 ~~~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgH 85 (234)
..+..++++++.|++++.++++|++.|++.|++|+++++.+|||++|..++++.|+|+++|++.+|++|+++|||||+||
T Consensus 56 ~~~~~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l~~~El~AVlAHElgH 135 (288)
T PRK03982 56 SYNARIVSEEEAPELYRIVERLAERANIPKPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLLNEDELEGVIAHELTH 135 (288)
T ss_pred hcCCEECChhhhHHHHHHHHHHHHHcCCCCCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999866567899999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHh----h------hhh-----------hHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHH
Q 026723 86 LKCDHGVWLTFANILTLGA----Y------TIP-----------GIGGMIAQ----SL-EEQLFRWLRAAELTCDRAALL 139 (234)
Q Consensus 86 i~~~h~~~~~~~~~l~~~~----~------~~~-----------~~~~~~~~----~~-~~~~~~~sR~~E~~AD~~a~~ 139 (234)
++++|..+.++...+.... . ... .++.++.. .. ....+.+||.+|++||++|++
T Consensus 136 i~~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~SR~~E~~AD~~A~~ 215 (288)
T PRK03982 136 IKNRDTLIQTIAATLAGAIMYLAQWLSWGLWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFAISRQREFSADEGGAR 215 (288)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence 9999998877554321110 0 000 01111111 11 112357899999999999999
Q ss_pred hcCCHHHHHHHHHHHhCCCCCccc-ccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhhhhH
Q 026723 140 VSQDPKVVISVLMKLAGGCPSLAD-QLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDY 218 (234)
Q Consensus 140 ~~~~~~~~~~aL~kl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~~y 218 (234)
++++|++++++|.|+.......+. +-+. . .......++.+.+++ ..|++|||++.+||+++++..++..|
T Consensus 216 ~~~~p~~l~~aL~kL~~~~~~~~~~~~~~-~----~~~~~~~~p~~~~~~----~~l~sTHP~~~eRI~~l~~~~~~~~~ 286 (288)
T PRK03982 216 LTGNPLALANALQKLEKGVRYIPLKNGNP-A----TAHMFIINPFRGQFL----ANLFSTHPPTEERIERLLEMAQEMGY 286 (288)
T ss_pred HhCCHHHHHHHHHHHHhhhccCCCCCCCH-H----HHhHhhcCCCCCchh----hHHhCCCcCHHHHHHHHHHHHHhccc
Confidence 999999999999999876432111 0010 0 000000011122233 36799999999999999988776544
No 5
>PRK01345 heat shock protein HtpX; Provisional
Probab=100.00 E-value=3.9e-35 Score=255.37 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=146.7
Q ss_pred CCceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhh
Q 026723 7 GTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHL 86 (234)
Q Consensus 7 ~~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi 86 (234)
-++.+++|.+.|+|++.++++|++.|++.|+||+++++.+|||++|.++.++.|+|+++|++.++++|+++|||||+||+
T Consensus 56 ~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L~~dEL~aVlAHElgHi 135 (317)
T PRK01345 56 YGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRLSPEEVAGVMAHELAHV 135 (317)
T ss_pred cCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhCCHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999997655679999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHH----Hh---hhh-----------hhHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Q 026723 87 KCDHGVWLTFANILTL----GA---YTI-----------PGIGGMIA---QSLE--EQLFRWLRAAELTCDRAALLVSQD 143 (234)
Q Consensus 87 ~~~h~~~~~~~~~l~~----~~---~~~-----------~~~~~~~~---~~~~--~~~~~~sR~~E~~AD~~a~~~~~~ 143 (234)
+++|..+.++...+.. +. .++ ..++.++. ..+. ...+.+||.+|++||++|++++++
T Consensus 136 ~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~SR~rE~~AD~~A~~ltg~ 215 (317)
T PRK01345 136 KNRDTLTMTITATLAGAISMLANFAFFFGGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAISRTREYAADRRGAEICGN 215 (317)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999988765433211 10 000 01111111 1111 123579999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhhhh
Q 026723 144 PKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQD 217 (234)
Q Consensus 144 ~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~~ 217 (234)
|++++++|.|+..+....+.... .. ......+.-.+.... .....+|+|||++.+||++|+++.++..
T Consensus 216 p~~L~~AL~KL~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~lfsTHP~~~eRI~~L~~~~~~~~ 283 (317)
T PRK01345 216 PLWLASALGKIERGAHGVPNEEA-ER-NPATAHMFIINPLSG----EGMDNLFSTHPATENRIAALQRMAGEMG 283 (317)
T ss_pred HHHHHHHHHHHHhhhccCccccc-cc-ChHHHHHHhcCCccc----cchhHHhcCCcChHHHHHHHHHHHHhcC
Confidence 99999999999976432111000 00 000000000000000 0123679999999999999999887643
No 6
>PRK03001 M48 family peptidase; Provisional
Probab=100.00 E-value=2.2e-35 Score=254.01 Aligned_cols=203 Identities=23% Similarity=0.265 Sum_probs=145.0
Q ss_pred CCceecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhh
Q 026723 7 GTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHL 86 (234)
Q Consensus 7 ~~~~~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi 86 (234)
-++.++++++.|+|++.++++|++.|++.|++|+++++.+|||++|.++.++.|+|+++|++.++++|+++|||||+||+
T Consensus 56 ~~~~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l~~~El~aVlAHElgHi 135 (283)
T PRK03001 56 YNAQEVDENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPNAFATGRNPEHAAVAATTGILRVLSEREIRGVMAHELAHV 135 (283)
T ss_pred cCCEECCccccHHHHHHHHHHHHHcCCCCCeEEEecCCCcceEEecCCCCCeEEEecHHHHhhCCHHHHHHHHHHHHHHH
Confidence 35588999999999999999999999999999999999999999997655668999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHH----Hh---hhh----------hhHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHhcCCH
Q 026723 87 KCDHGVWLTFANILTL----GA---YTI----------PGIGGMIAQ----SL-EEQLFRWLRAAELTCDRAALLVSQDP 144 (234)
Q Consensus 87 ~~~h~~~~~~~~~l~~----~~---~~~----------~~~~~~~~~----~~-~~~~~~~sR~~E~~AD~~a~~~~~~~ 144 (234)
+++|..+.++...+.. +. .+. ..+..++.. .. ....+.+||.+|++||++|++++++|
T Consensus 136 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~~p 215 (283)
T PRK03001 136 KHRDILISTISATMAGAISALANFAMFFGGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRAREFEADRGGARISGDP 215 (283)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhCCH
Confidence 9999998765432211 10 000 001111111 11 12235799999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhh
Q 026723 145 KVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRS 215 (234)
Q Consensus 145 ~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~ 215 (234)
++++++|.|+...+...+.... ...-+.+ .+...++...+.| ..|++|||++.+||++++++.++
T Consensus 216 ~~l~~AL~Kl~~~~~~~p~~~~-~~~~~~~-~~~~~~p~~~~~~----~~l~~THP~~~eRI~~l~~~~~~ 280 (283)
T PRK03001 216 QALASALDKIHRYASGIPFQAA-EAHPATA-QMMIINPLSGGGL----ANLFSTHPSTEERIARLMAMART 280 (283)
T ss_pred HHHHHHHHHHHhhhccCCcccc-cCCHHHH-HHHhcCCCCcchH----HHHHcCCcCHHHHHHHHHHHHHh
Confidence 9999999999986543211000 0000000 0000011011122 36799999999999999987655
No 7
>PRK01265 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.1e-34 Score=251.73 Aligned_cols=153 Identities=23% Similarity=0.306 Sum_probs=121.1
Q ss_pred CCceecCCCC--chHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHh
Q 026723 7 GTSVLVSKNQ--LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 84 (234)
Q Consensus 7 ~~~~~v~~~~--~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElg 84 (234)
-++.+++|.+ .|+|++.++++|++.|++.|++|+++++.+|||++|.+.++++|+|+++|++.++++|+++|+|||+|
T Consensus 70 ~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l~~~El~aVlAHElg 149 (324)
T PRK01265 70 YRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKILNRDEIKAVAGHELG 149 (324)
T ss_pred cCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhCCHHHHHHHHHHHHH
Confidence 3667888877 89999999999999999999999999999999999975455789999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHHhh----------hhhh--------HHH-HH----H---HH-HHHHHHHHHHHHHHHHHHHH
Q 026723 85 HLKCDHGVWLTFANILTLGAY----------TIPG--------IGG-MI----A---QS-LEEQLFRWLRAAELTCDRAA 137 (234)
Q Consensus 85 Hi~~~h~~~~~~~~~l~~~~~----------~~~~--------~~~-~~----~---~~-~~~~~~~~sR~~E~~AD~~a 137 (234)
|++++|..+.++...+..+.. +..+ .+. .+ . .. .....+.+||.+||+||++|
T Consensus 150 Hik~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ll~~~~~~i~~~l~~aiSR~rEy~AD~~a 229 (324)
T PRK01265 150 HLKHRDVELLMAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLLVLSINRMREAYADVNS 229 (324)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999988775543222111 0000 000 11 1 11 12234678999999999999
Q ss_pred HH-hcCCHHHHHHHHHHHhCCCC
Q 026723 138 LL-VSQDPKVVISVLMKLAGGCP 159 (234)
Q Consensus 138 ~~-~~~~~~~~~~aL~kl~~~~~ 159 (234)
++ ++++|+++++||.|+..+..
T Consensus 230 a~~~tg~p~~LasAL~KL~~~~~ 252 (324)
T PRK01265 230 ALTVPGGAENLQTALAKITLSMD 252 (324)
T ss_pred HHhhcCChHHHHHHHHHHHhccc
Confidence 98 56999999999999998654
No 8
>PRK02870 heat shock protein HtpX; Provisional
Probab=100.00 E-value=5.9e-34 Score=248.45 Aligned_cols=202 Identities=21% Similarity=0.249 Sum_probs=139.5
Q ss_pred CceecCCCC-----chHHHHHHHHHHHHcCCC-CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHH
Q 026723 8 TSVLVSKNQ-----LPELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAH 81 (234)
Q Consensus 8 ~~~~v~~~~-----~p~l~~~v~~l~~~~~~~-~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaH 81 (234)
+++.++|.+ .|+|++.++++|++.|++ .|+||+++++.+|||++|.+++++.|+|++||++.++++|+++||||
T Consensus 100 ~a~~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L~~dEL~aVlAH 179 (336)
T PRK02870 100 EYKEITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKLDRDELQAVMAH 179 (336)
T ss_pred CCEEcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhCCHHHHHHHHHH
Confidence 455566654 779999999999999999 89999999999999999976556799999999999999999999999
Q ss_pred HHhhhhcCcHHHHHHHHHHHHHh--------hhh-h----------hHHHHHH----HHHH-HHHHHHHHHHHHHHHHHH
Q 026723 82 ELGHLKCDHGVWLTFANILTLGA--------YTI-P----------GIGGMIA----QSLE-EQLFRWLRAAELTCDRAA 137 (234)
Q Consensus 82 ElgHi~~~h~~~~~~~~~l~~~~--------~~~-~----------~~~~~~~----~~~~-~~~~~~sR~~E~~AD~~a 137 (234)
|+||++++|..+.++...+..+. +.. . .+..++. ..+. ...+.+||.+||+||++|
T Consensus 180 ELgHik~~di~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~iSR~rEy~AD~~A 259 (336)
T PRK02870 180 ELSHIRHGDIRLTLCVGVLSNIMLIVADFLFYSFMGNRRNSGANRARMIILILRYVLPILTVLLMLFLSRTREYMADAGA 259 (336)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999998766543322110 000 0 0011111 1111 123579999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCCcccc--cCH-HHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhh
Q 026723 138 LLVSQDPKVVISVLMKLAGGCPSLADQ--LNV-DAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAW 212 (234)
Q Consensus 138 ~~~~~~~~~~~~aL~kl~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~ 212 (234)
++++++|+++++||.|+...+...+.+ ... ..=-..+..+ -.++...+. .....+|+|||++.+||++|+..
T Consensus 260 a~ltg~p~aLasAL~KL~~~~~~~~~~~~~~~~~~~~~~a~~~-i~~p~~~~~--~~~~~LfsTHPp~e~RI~rL~~~ 334 (336)
T PRK02870 260 VELMRDNEPMARALQKISNDHAQNDEQYAYKHTDHESTRRAAY-LFDPAGISP--GSLSDAFSTHPSIENRLAALGGK 334 (336)
T ss_pred HHHhCCHHHHHHHHHHHHhccccCccccccccccCChhhhhhh-ccCCccccc--ccHhHHHcCCCCHHHHHHHHhhc
Confidence 999999999999999999876542210 000 0000000000 001110000 01246899999999999999863
No 9
>PRK05457 heat shock protein HtpX; Provisional
Probab=100.00 E-value=6e-33 Score=238.35 Aligned_cols=188 Identities=21% Similarity=0.281 Sum_probs=134.7
Q ss_pred CceecC-CCC--chHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHh
Q 026723 8 TSVLVS-KNQ--LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 84 (234)
Q Consensus 8 ~~~~v~-~~~--~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElg 84 (234)
++..++ |.+ .|.+++.++++|++.|++.|++|+++++.+|||++|.+++++.|++++||++.+|++|+++|+|||+|
T Consensus 64 ~a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlAHElg 143 (284)
T PRK05457 64 GAEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNMSRDEVEAVLAHEIS 143 (284)
T ss_pred CCeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhCCHHHHHHHHHHHHH
Confidence 556665 333 34599999999999999999999999999999999987667789999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHH-HHHhh--------hh----------hhHHH----HH----HHHHH-HHHHHHHHHHHHHHHHH
Q 026723 85 HLKCDHGVWLTFANIL-TLGAY--------TI----------PGIGG----MI----AQSLE-EQLFRWLRAAELTCDRA 136 (234)
Q Consensus 85 Hi~~~h~~~~~~~~~l-~~~~~--------~~----------~~~~~----~~----~~~~~-~~~~~~sR~~E~~AD~~ 136 (234)
|++++|..+.++...+ ..... +. ++++. ++ ...+. ...+.+||.+||+||++
T Consensus 144 Hi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~SR~rEy~AD~~ 223 (284)
T PRK05457 144 HIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDRFVSGNEEGNGIGYFIVSIVLEIVFGILASIIVMWFSRHREFRADAG 223 (284)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999876543211 11000 00 01111 11 11111 22357899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHh
Q 026723 137 ALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA 211 (234)
Q Consensus 137 a~~~~~~~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~ 211 (234)
|+++++ |+++++||.|+...+.. + .+ +. ...+.-.+ + ..+ ..|++|||++.+||++|++
T Consensus 224 Aa~ltg-p~~L~~AL~KL~~~~~~-~--~~-~~----~~~~~i~~--~-~~~----~~lfsTHP~~~eRI~~L~~ 282 (284)
T PRK05457 224 GAKLAG-REKMIAALQRLKTSYEP-Q--LP-GS----MAAFGING--K-SGL----SELFMSHPPLEKRIAALRS 282 (284)
T ss_pred HHHhhC-HHHHHHHHHHHHhhCcc-C--CC-hH----HHHhhccC--c-hhH----HHHHcCCcCHHHHHHHHHh
Confidence 999987 99999999999887652 1 00 00 00000000 1 012 3679999999999999975
No 10
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-28 Score=212.33 Aligned_cols=181 Identities=30% Similarity=0.352 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHcCCC-CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHHH-HH
Q 026723 19 ELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL-TF 96 (234)
Q Consensus 19 ~l~~~v~~l~~~~~~~-~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~~-~~ 96 (234)
.+...+.+++...+.+ .|+++|++++.+|||++|..+..+.|+|++||++.+|+||+++|||||+||++++|.... ++
T Consensus 100 ~~~~~v~~~a~~~~~~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l~~dEl~aVlaHElgHi~~rd~~~~~~~ 179 (302)
T COG0501 100 VLLLKVAELARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRLTL 179 (302)
T ss_pred HHHHHHHHHHHHCCCCCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhCCHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3444899999999999 899999999999999998654567999999999999999999999999999999999973 32
Q ss_pred HHHHHHHh----hhhhh---------HHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCC
Q 026723 97 ANILTLGA----YTIPG---------IGGM----IAQ-SLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGC 158 (234)
Q Consensus 97 ~~~l~~~~----~~~~~---------~~~~----~~~-~~~~~~~~~sR~~E~~AD~~a~~~~~~~~~~~~aL~kl~~~~ 158 (234)
...+.... ..... .... +.. ......+.|||.+|++||++|+++++ |+.+.++|.|+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~-~~~l~~aL~kl~~~~ 258 (302)
T COG0501 180 RGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREYEADRFAAKLTG-PEKLASALQKLARLS 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhchhhccC-hHHHHHHHHHHHhhh
Confidence 22221111 10110 0001 111 12234578999999999999999998 999999999998865
Q ss_pred CCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhhh
Q 026723 159 PSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQ 216 (234)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~ 216 (234)
.. .....+... ....+.+ ..+++|||++.+||++|.++....
T Consensus 259 ~~----~~~~~~~~~--------~~~~~~~----~~~~stHP~~~~Ri~~L~~~~~~~ 300 (302)
T COG0501 259 GR----ANSKAFIAS--------GFSGGRL----QALFSTHPPLAERIAALRQLALTV 300 (302)
T ss_pred cc----cchhhhhcC--------cccccch----HHHHhcCCCHHHHHHHHHHHHHhh
Confidence 31 000111100 0000111 367999999999999999987654
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.96 E-value=1.2e-29 Score=210.86 Aligned_cols=183 Identities=27% Similarity=0.321 Sum_probs=97.6
Q ss_pred ecCCCCchHHHHHHHHHHHHc--CCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 11 LVSKNQLPELHQLMTEAAEIL--NLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 11 ~v~~~~~p~l~~~v~~l~~~~--~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
++.|.+.|+|++.+++++++. +.+.+++|+++++.+|||++|.+ .++.|+|+++|++.++++|+++|||||+||+++
T Consensus 24 ~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~-~~~~I~v~~~ll~~~~~~el~aVlaHElgH~~~ 102 (226)
T PF01435_consen 24 KFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDSPSPNAFATGGG-PRKRIVVTSGLLESLSEDELAAVLAHELGHIKH 102 (226)
T ss_dssp C--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--SSEEEEEETTT-C--EEEEEHHHHHHSSHHHHHHHHHHHHHHHHT
T ss_pred hccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccC-CCcEEEEeChhhhcccHHHHHHHHHHHHHHHHc
Confidence 344889999999999999999 77788999999999999999864 367899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHH----HHh-hhh---hh---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 026723 89 DHGVWLTFANILT----LGA-YTI---PG---IGGM-------IAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISV 150 (234)
Q Consensus 89 ~h~~~~~~~~~l~----~~~-~~~---~~---~~~~-------~~~~~~~~~~~~sR~~E~~AD~~a~~~~~~~~~~~~a 150 (234)
+|..+.+....+. ... ..+ .. .... +..........+||.+|++||++|++++++++.++++
T Consensus 103 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a 182 (226)
T PF01435_consen 103 RHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALLARA 182 (226)
T ss_dssp THCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------HHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHHHHh
Confidence 9987653222111 110 000 00 0000 0011112346799999999999999999987776666
Q ss_pred HHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHH
Q 026723 151 LMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRARE 208 (234)
Q Consensus 151 L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~ 208 (234)
+.++... ..+++.............. ....+++|||++.+||++
T Consensus 183 ~~~~~~~----------~~~l~~l~~~~~~~~~~~~----~~~~~~~tHP~~~~Ri~~ 226 (226)
T PF01435_consen 183 LYKPAAA----------ISALEKLAEANSMRPDSDW----RYSSLFSTHPSTEERIAA 226 (226)
T ss_dssp TS-TTHH----------HHHHHHHT---------------------------HHHHHH
T ss_pred CCCHHHH----------HHHHHHHHHHhccccCCcc----ccchhcCCCcCHHHHhCc
Confidence 5555332 1222222110000111111 124679999999999985
No 12
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=190.95 Aligned_cols=179 Identities=26% Similarity=0.235 Sum_probs=135.8
Q ss_pred ecCCCCchHHHHHHHHHHHHcCCCCCcEEEec----CCCCcEEEecccCCCCEEEEcHHHH--hh-cCHHHHHHHHHHHH
Q 026723 11 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLV--EL-LTRKELQAVLAHEL 83 (234)
Q Consensus 11 ~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~----~~~~nA~~~g~~g~~~~I~i~~~ll--~~-l~~~El~aVlaHEl 83 (234)
|.+|.+...+++.++++++..|+|..+++|++ +...||+.+|++. ..+|+|.+.|+ +. ++++|+.||++||+
T Consensus 210 K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~~-~KRIvIyDtLl~~~~~~~~eel~AVl~HEL 288 (428)
T KOG2719|consen 210 KFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGLCK-NKRIVIYDTLLLEEEHLNNEELVAVLAHEL 288 (428)
T ss_pred CCCCCCCCchHHHHHHHHHhcCCCceEEEEEecCCCCCCCCeeeeeccc-cceEEEehhhhhhhhccccHHHHHHHHHHh
Confidence 56677777999999999999999999999986 4689999999855 56899999999 33 58999999999999
Q ss_pred hhhhcCcHHHHHHHHHHHHHhh------------------h---hhh-HHHHH-HH--------HHHHHHHHHHHHHHHH
Q 026723 84 GHLKCDHGVWLTFANILTLGAY------------------T---IPG-IGGMI-AQ--------SLEEQLFRWLRAAELT 132 (234)
Q Consensus 84 gHi~~~h~~~~~~~~~l~~~~~------------------~---~~~-~~~~~-~~--------~~~~~~~~~sR~~E~~ 132 (234)
||++++|..+++....+..+.. + .|. +|.++ .. .+...++..||+.||.
T Consensus 289 GHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyq 368 (428)
T KOG2719|consen 289 GHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQ 368 (428)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886543221100 0 122 23221 11 1112345689999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhh
Q 026723 133 CDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAW 212 (234)
Q Consensus 133 AD~~a~~~~~~~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~ 212 (234)
||++|.++..+ +.+.+||.|+...+-..+ .++..| .+|..|||+..+|+++++..
T Consensus 369 AD~fA~klGYg-~~L~~AL~KL~~dnlsf~--------------------~~D~LY----s~~~~~HPtvleRl~~l~~~ 423 (428)
T KOG2719|consen 369 ADAFAKKLGYG-KDLRQALIKLFVDNLSFP--------------------VSDPLY----SAWHHLHPTVLERLDALDYL 423 (428)
T ss_pred HHHHHHHcCCc-hhHHHHHHHHhhhhcCCC--------------------CCcHHH----HHHHhcCchHHHHHHHHHHH
Confidence 99999998655 999999999988764322 234455 36899999999999999876
Q ss_pred hhh
Q 026723 213 SRS 215 (234)
Q Consensus 213 ~~~ 215 (234)
...
T Consensus 424 ~~k 426 (428)
T KOG2719|consen 424 SEK 426 (428)
T ss_pred Hhh
Confidence 543
No 13
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.89 E-value=2.9e-22 Score=177.92 Aligned_cols=171 Identities=24% Similarity=0.316 Sum_probs=121.0
Q ss_pred cCCCCchHHHHHHHHHHHH----cCCC--CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhc-CHHHHHHHHHHHHh
Q 026723 12 VSKNQLPELHQLMTEAAEI----LNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELG 84 (234)
Q Consensus 12 v~~~~~p~l~~~v~~l~~~----~~~~--~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l-~~~El~aVlaHElg 84 (234)
+....+|+|.+.|+++..+ .+.+ +-++++++++.+|||++ +| ++|+|++||+-.. ||.||++|||||+|
T Consensus 64 ~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA~--~G--g~v~vntGLll~ae~esElagViAHEig 139 (484)
T COG4783 64 VPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAFAT--PG--GYVVVNTGLLLTAENESELAGVIAHEIG 139 (484)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchhhc--CC--ceEEEehHHHHhcCCHHHHHHHHHHHHH
Confidence 5666788888888876554 5544 34788899999999998 34 3799999999877 89999999999999
Q ss_pred hhhcCcHHHHHHH----------HH-HHHHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Q 026723 85 HLKCDHGVWLTFA----------NI-LTLGAYTIP------GIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS----QD 143 (234)
Q Consensus 85 Hi~~~h~~~~~~~----------~~-l~~~~~~~~------~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~----~~ 143 (234)
|+..||..+..-. .+ +.+++.... +++..... ...-...|||..|.+||++|+..+ +|
T Consensus 140 Hv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~~a~-~~~g~L~~sR~~E~eADr~Gi~~L~raGyd 218 (484)
T COG4783 140 HVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGALAG-AAQGQLNFSRQNEQEADRIGITTLVRAGYD 218 (484)
T ss_pred HHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHHHHH-hhhhhhhcchhhHHHHHHHHHHHHHHcCCC
Confidence 9999998865421 11 111111110 11111111 111235799999999999999875 79
Q ss_pred HHHHHHHHHHHhCCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhh
Q 026723 144 PKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRS 215 (234)
Q Consensus 144 ~~~~~~aL~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~ 215 (234)
|.+|.+.+.|++....+ ... .+.|+.|||.+.+||..+++.+++
T Consensus 219 p~gM~~ff~rl~~~~~~--------------------~~~--------~p~yl~THPlp~~RIa~lr~ra~q 262 (484)
T COG4783 219 PQGMPEFFERLADQLRY--------------------GGQ--------PPEYLLTHPLPEERIADLRNRAEQ 262 (484)
T ss_pred chhHHHHHHHHHHHHhc--------------------CCC--------CChHHhcCCCchhHHHHHHHHHHh
Confidence 99999999998743210 011 135688999999999999987774
No 14
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-20 Score=159.32 Aligned_cols=177 Identities=21% Similarity=0.235 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcC----CCC--CcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhc-CHHHHHHHHHHHHhhhhcCcH
Q 026723 19 ELHQLMTEAAEILN----LEA--PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 19 ~l~~~v~~l~~~~~----~~~--p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l-~~~El~aVlaHElgHi~~~h~ 91 (234)
.+.+++.++.+..+ +.- =+|.|++++.+|||++ ||+ .|+|.+|+|..+ +++++++|||||+||...||.
T Consensus 216 ~V~~vlk~iIea~~~~~slsgIkWeihVVndPipNAFvL--PgG--KvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 216 AVKEVLKHIIEANKDVPSLSGIKWEIHVVNDPIPNAFVL--PGG--KVFVFTGILNSCKDDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred HHHHHHHHHHHHhccCCcccCceeEEEEecCCCCceeec--cCC--eEEEEechhhcccChHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655 221 1789999999999999 454 599999999998 789999999999999999998
Q ss_pred HHHHH----HHHHHHHhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHhCCCCCc
Q 026723 92 VWLTF----ANILTLGAYTIPGIGGMIAQSLEE--QLFRWLRAAELTCDRAALLVS----QDPKVVISVLMKLAGGCPSL 161 (234)
Q Consensus 92 ~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~sR~~E~~AD~~a~~~~----~~~~~~~~aL~kl~~~~~~~ 161 (234)
.-... ..++..+.+.+.+ ...+...+.. +.+.+||++|.|||-+|..++ .||.+....++++.......
T Consensus 292 AEki~k~~~~siLgLvlyt~~~-a~~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~~egqm 370 (424)
T KOG2661|consen 292 AEKIGKVHLLSILGLVLYTMIW-AICPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEFVEGQM 370 (424)
T ss_pred HHhhhhhHHHHHHHHHHHHHHh-hccchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHHhhhhc
Confidence 75542 2222222211110 0001111111 225799999999999988764 68888888888775433210
Q ss_pred ccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhhhhHHHHHHhcc
Q 026723 162 ADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAM 226 (234)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~~y~~~~~~~~ 226 (234)
+.. .+.+|++|||+..+||+.+.+|..+.+--+....+|
T Consensus 371 -------------------g~~-------~~~eflSTHPSskkRie~~~~lLpqAnvirE~sdcy 409 (424)
T KOG2661|consen 371 -------------------GQP-------KMPEFLSTHPSSKKRIEYLDRLLPQANVIREMSDCY 409 (424)
T ss_pred -------------------CCC-------CCchhhhcCCCccchhHHHHHhchHHHHHHHHhcCC
Confidence 111 124689999999999999999999887777777776
No 15
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=154.28 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=124.1
Q ss_pred CCCchHHHHHHHHHHHHcCCC--C----CcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhc-CHHHHHHHHHHHHhhh
Q 026723 14 KNQLPELHQLMTEAAEILNLE--A----PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHL 86 (234)
Q Consensus 14 ~~~~p~l~~~v~~l~~~~~~~--~----p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l-~~~El~aVlaHElgHi 86 (234)
+..+|.+++++.++..++-.. . .++.|++++.+|||++ || .+|+|+.|||..+ +..|+++||+||+||+
T Consensus 60 eY~D~Kler~Vari~g~lt~~S~~p~q~YriTilnSP~INAFAL--PG--GYlYitRGLlAland~sEvAAVl~HEmgHV 135 (479)
T COG4784 60 EYRDPKLERMVARIVGALTAVSENPQQTYRITILNSPNINAFAL--PG--GYLYITRGLLALANDSSEVAAVLAHEMGHV 135 (479)
T ss_pred ccCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecCCCcccccc--CC--ceEEEehhHHHHcCCHHHHHHHHHhhhhhe
Confidence 567888999999988876532 2 3688999999999998 55 4899999999988 5679999999999999
Q ss_pred hcCcHHHHHHHHHHHHHhh-----hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHh
Q 026723 87 KCDHGVWLTFANILTLGAY-----TIP--GIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS----QDPKVVISVLMKLA 155 (234)
Q Consensus 87 ~~~h~~~~~~~~~l~~~~~-----~~~--~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~----~~~~~~~~aL~kl~ 155 (234)
..+|.....-...-..++. .+. .-|......-..-+..|||++|++||.+|+++. +||-++++.|..|+
T Consensus 136 tAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGklrla~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl~sm~ 215 (479)
T COG4784 136 TANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGKLRLAQFSRNQELQADAIGIKMLGEAGYDPYAAARFLQSMA 215 (479)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhhHHHhhhccchhhhhhhhhHHHHHhcCCChHHHHHHHHHHH
Confidence 9999987653221111111 010 011111111112345799999999999999986 59999999999998
Q ss_pred CCCCCcccccCHHHHHHHHHHhhhcCCCchhHHHHhhhhccCCCCchHHHHHHHHhhhhh
Q 026723 156 GGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRS 215 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~ 215 (234)
.+... . .++. ..+. . ..+++|||.++.||+..++.++.
T Consensus 216 ay~~F-~-s~~g---------------~adq----s-ldfl~sHPntpqRiqla~~hARq 253 (479)
T COG4784 216 AYTDF-R-SVSG---------------AADQ----S-LDFLASHPNTPQRIQLARRHARQ 253 (479)
T ss_pred hhhhh-c-ccCc---------------chhh----h-cchhhcCCCChHHHHHHHHHHHh
Confidence 77642 1 1111 0110 0 25699999999999999877763
No 16
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.68 E-value=1.3e-15 Score=132.17 Aligned_cols=136 Identities=29% Similarity=0.425 Sum_probs=112.4
Q ss_pred CCCCchHHHHHHHHHHHHcCCCCC-cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcH
Q 026723 13 SKNQLPELHQLMTEAAEILNLEAP-DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 13 ~~~~~p~l~~~v~~l~~~~~~~~p-~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~ 91 (234)
++-..+++.+.+++++++.|++.+ ++++ .+....++++|+ .+|+|+++.++++.++++|+..||+||++|++++|.
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-s~~i~sP~~~G~--~~p~I~lP~~~~~~~~~~el~~il~HEl~Hikr~D~ 212 (299)
T PF05569_consen 136 RPVEDEELQALLEECKEELGIKRPIRIRV-SSGISSPFVFGF--LRPVIVLPESLLEDLSEEELRAILLHELAHIKRRDL 212 (299)
T ss_pred cccCcHHHHHHHHHHHHHhCCCCceEEEE-cCCCCCCeeecC--cceEEEecCccccccCHHHHHHHHHHHHHHHHCCCh
Confidence 344556788999999999998854 4444 334557889987 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHhCCCC
Q 026723 92 VWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLV--SQDPKVVISVLMKLAGGCP 159 (234)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~--~~~~~~~~~aL~kl~~~~~ 159 (234)
++.++..++..+.++.|.+. .....+.+.+|+.||+.+.+. ..+...+..+|.+++....
T Consensus 213 ~~~~l~~l~~~l~WfnP~~~--------~~~~~~~~~~E~~cD~~vl~~l~~~~~~~Y~~~Ll~~~~~~~ 274 (299)
T PF05569_consen 213 LWKLLAELLCALHWFNPLVW--------LLRRRIRRDRELACDEAVLRNLGKEERKAYAETLLKVAKRSQ 274 (299)
T ss_pred HHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHhhhHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence 99999888888888888644 233467888999999999998 4677789999999987654
No 17
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=4e-11 Score=102.41 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHHHHHHH
Q 026723 19 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFAN 98 (234)
Q Consensus 19 ~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~~~~~~ 98 (234)
+....+.++......+.+.+.. .+...+..++|. .+|+|++++.+.+.++++|+..|++||++|+++||...+++..
T Consensus 137 d~~~~~~~~~~~~~~k~i~ir~-s~~i~~P~v~gl--~kp~IvlP~d~~~r~~~ee~~yIilHEl~Hlk~gD~i~n~i~~ 213 (337)
T COG4219 137 DKRKIVTILKNHQYKKHILIRK-SKAIDGPMVFGL--VKPCIVLPADFVERLTDEELKYIILHELSHLKRGDAIINLIVV 213 (337)
T ss_pred cHHHHHHHHHHhhhccCeeEee-cccCCCceeecc--CcceEEccHHHHhhcCHHhhhhhHhHHHhhhhcccHHHHHHHH
Confidence 4566777787777766643333 334557778886 5799999999999999999999999999999999999999888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 026723 99 ILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPK---VVISVLMKL 154 (234)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~~~~~---~~~~aL~kl 154 (234)
.+..+.++.|.+- ........++|..||+.+.... +|+ .+.+++.++
T Consensus 214 ~~~~l~WfNP~v~--------l~~~~~~~D~E~aCDa~vL~~~-~~~err~YaEsil~~ 263 (337)
T COG4219 214 VLGVLFWFNPLVH--------LGKRKIRIDQEIACDAAVLARI-NPEERRTYAESILKL 263 (337)
T ss_pred HHhHHhhcChHHH--------HHHHHHHhhHHHHhhHHHHhcc-ChHHHHHHHHHHHHH
Confidence 8888888888633 1123456689999999999865 343 355566554
No 18
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=98.00 E-value=8e-05 Score=54.95 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026723 57 KPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRA 136 (234)
Q Consensus 57 ~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~ 136 (234)
.+.|+|+.. +++.+..++++|||||+..+|...... ... -.......|++||.+
T Consensus 28 ~~~I~in~~----~~~~~~~f~laHELgH~~~~~~~~~~~--------~~~--------------~~~~~~~~E~~An~f 81 (122)
T PF06114_consen 28 NPIIFINSN----LSPERQRFTLAHELGHILLHHGDETFN--------YYL--------------NYFFNERQEREANAF 81 (122)
T ss_dssp TTEEEEESS----S-HHHHHHHHHHHHHHHHHHH-HHHHH--------HHH--------------HH--THHHHHHHHHH
T ss_pred CCEEEECCC----CCHHHHHHHHHHHHHHHHhhhccccch--------hhc--------------cccchhhHHHHHHHH
Confidence 578999887 788999999999999999988654320 000 012344589999999
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 026723 137 ALLVSQDPKVVISVLMKLA 155 (234)
Q Consensus 137 a~~~~~~~~~~~~aL~kl~ 155 (234)
|..++-..+.....+.+..
T Consensus 82 A~~lL~p~~~~~~~~~~~~ 100 (122)
T PF06114_consen 82 AAALLMPEEDFRDALEKYR 100 (122)
T ss_dssp HHHHHS-HHHHHHHHHHH-
T ss_pred HHHHhCCHHHHHHHHHHcC
Confidence 9999866666666665553
No 19
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=97.89 E-value=0.00011 Score=63.56 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCC--CCcEEEecC----------CCCcEEEecccCCCCEEEEcHHHHhhcC-------HHHHHHHH
Q 026723 19 ELHQLMTEAAEILNLE--APDLYVRQS----------PVPNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVL 79 (234)
Q Consensus 19 ~l~~~v~~l~~~~~~~--~p~v~v~~~----------~~~nA~~~g~~g~~~~I~i~~~ll~~l~-------~~El~aVl 79 (234)
.+.+.+.+..++.|.+ .|++.++.+ ...++|=++ ....|++...+++.|. +--...||
T Consensus 98 ~le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFYCp---~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVl 174 (292)
T PF04228_consen 98 CLEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFYCP---ADQTIYLDLSFFDELQQRFGASGDFAQAYVL 174 (292)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEeCC---CCCEEEechHHHHHHHHHhCCccHHHHHHHH
Confidence 3566677777778876 677777642 123455543 3458999988776552 33567899
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026723 80 AHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQ 142 (234)
Q Consensus 80 aHElgHi~~~h~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~~ 142 (234)
|||.||..++.. .++.......... -...-+.+||+.|++||.+|=....
T Consensus 175 AHEyGHHVQ~l~------Gil~~~~~~~~~~-------~~~~~~~~svr~ELQADC~AGvw~~ 224 (292)
T PF04228_consen 175 AHEYGHHVQNLL------GILDAVRQAQQGR-------SPAEANELSVRLELQADCFAGVWAG 224 (292)
T ss_pred HHHHHHHHHHHh------hhHHHHHHHhhcc-------CccccchHHHHHHHHHHHHHHHHhh
Confidence 999999877432 1111000000000 0001136789999999999887653
No 20
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=97.78 E-value=4.4e-05 Score=62.54 Aligned_cols=42 Identities=21% Similarity=0.067 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026723 73 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 141 (234)
Q Consensus 73 ~El~aVlaHElgHi~~~h~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~ 141 (234)
--+.+++.||++|+..+|.... . ...+++.|.+||.+|....
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~~-------------~--------------~~~~~~eE~~AD~~A~~~i 140 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGDS-------------S--------------PSQSIQEEKEADSYATEMI 140 (206)
T ss_pred HHHHHHHHHHHHHHHHcCcccc-------------c--------------cchhHHHHHhhhHHHHHHH
Confidence 4678999999999999997532 0 2567889999999999985
No 21
>PRK09672 phage exclusion protein Lit; Provisional
Probab=97.49 E-value=0.0002 Score=61.35 Aligned_cols=42 Identities=21% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026723 73 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 141 (234)
Q Consensus 73 ~El~aVlaHElgHi~~~h~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~ 141 (234)
.-+++|+.||++|+..+|... .. ..++++.|.+||.+|...+
T Consensus 163 ~A~a~i~~HEiaHv~~~h~~~------------~~---------------~e~s~~eE~eaDs~At~~i 204 (305)
T PRK09672 163 CALAWILLHEIAHVEFQHSSL------------ES---------------NEDSIQEEKEADSYATNWL 204 (305)
T ss_pred HHHHHHHHHHHHHHHhccccc------------cC---------------chHHHHHHHHHHHHHHHHH
Confidence 468999999999999999742 01 2567889999999999886
No 22
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=97.30 E-value=0.00071 Score=55.28 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHH
Q 026723 20 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 20 l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~ 92 (234)
+...+...++.+|++.+++.|.+.......| . .++.|.++..|+ .++++-+..|+.|||+|+.+.+.-
T Consensus 114 l~~~~~~~~~~~~~~~~~i~ir~~ksrWGsc-~---~~~~I~ln~~L~-~~P~~~idYVvvHEL~Hl~~~nHs 181 (205)
T PF01863_consen 114 LPERLKKYAKKLGLPPPKIKIRDMKSRWGSC-S---SKGNITLNWRLV-MAPPEVIDYVVVHELCHLRHPNHS 181 (205)
T ss_pred HHHHHHHHHHHcCCCcceEEEeehhhccccC-C---CCCcEEeecccc-cCCccHHHHHHHHHHHHhccCCCC
Confidence 4455666677899998899997766655555 2 356799999988 589999999999999999876543
No 23
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.92 E-value=0.0046 Score=51.57 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHHHH
Q 026723 20 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 95 (234)
Q Consensus 20 l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~~~ 95 (234)
+...++..+..+|.+...+.+-+.....+.|.- ...|.++..+. ..+++.+..|++||++|++..+.-..+
T Consensus 125 l~~~~~~~~~~l~~~~~~~~ik~~k~~WGScs~----~~~i~~~~~l~-~~p~~~i~YVvvHELaHLke~nHs~~F 195 (223)
T COG1451 125 LEIRLKEYAKKLGVPPRAIKLKNMKRRWGSCSK----AGEIRFNWRLV-MAPEEVIDYVVVHELAHLKEKNHSKRF 195 (223)
T ss_pred HHHHHHHHHHHhCCCccceeeeeccceeeeecC----CCcEEeehhhh-cCCHHHHHHHHHHHHHHHhhhhccHHH
Confidence 445556667778888777777665566666652 22577777766 689999999999999999988754333
No 24
>PRK04351 hypothetical protein; Provisional
Probab=96.74 E-value=0.0077 Score=47.05 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHH-cCCCCCc-EEEecCC---CCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhh
Q 026723 17 LPELHQLMTEAAEI-LNLEAPD-LYVRQSP---VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHL 86 (234)
Q Consensus 17 ~p~l~~~v~~l~~~-~~~~~p~-v~v~~~~---~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi 86 (234)
..+|.+.+++++.. ++.+.|. +.. +.. ...++.+ ....|-++..+++..+++++..||+||++|+
T Consensus 3 ~~~l~~l~~~~s~~~F~~~f~~~v~~-n~RlrttgG~~~l----~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 3 NQELQRLVEEISLEYFGKPFRHQAYF-NKRLRTTGGRYLL----KDHHIEFNPKMLEEYGLEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEE-eccchhhhheeec----CCCeEEeCHHHHhhccHHHHHhhHHHHHHHH
Confidence 35788889998875 5666443 333 221 1223322 3457999999999999999999999999997
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=96.44 E-value=0.0076 Score=46.84 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=44.9
Q ss_pred HHHHHHHHHH-HHcCCC--CCcEEEecCCCCcEEEeccc-CCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 19 ELHQLMTEAA-EILNLE--APDLYVRQSPVPNAYTLAIS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 19 ~l~~~v~~l~-~~~~~~--~p~v~v~~~~~~nA~~~g~~-g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
+|.+.++++. +.++-+ .|.|..-. ....+ .|.. .....|.++..+++..+++++..||.|||+|+..
T Consensus 2 ~L~~~~~~~n~~~F~~~l~~~~i~w~~-r~~~~--~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 2 ELTQRLEDASLRVFGRKLPHPKVVWNK-RLRKT--GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAAL 72 (146)
T ss_pred hHHHHHHHHHHHHHCCCCCCCEEEEeh-hhhhh--hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 5677777776 445554 33344422 21111 1111 1256899999999989999999999999999987
No 26
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=96.17 E-value=0.017 Score=49.90 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHHH
Q 026723 43 SPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL 94 (234)
Q Consensus 43 ~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~~ 94 (234)
+.....+++ .|. .|+++...+..++.+|+.+||+||+-|+..+|..+.
T Consensus 32 ~~~~~t~~t--Dg~--~l~~nP~~~~~l~~~~~~~~l~HevlH~~~~H~~r~ 79 (292)
T PF13203_consen 32 DDGIPTAAT--DGR--RLYYNPEFLESLSPEERVGLLLHEVLHCLLRHPWRR 79 (292)
T ss_pred CCCCceeeE--cCc--EEEECcHHHhcCCHHHHHHHHHHHHHHHHccchhhh
Confidence 444444444 443 899999999999999999999999999999998654
No 27
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.99 E-value=0.047 Score=42.61 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=29.0
Q ss_pred EEEEcHHHHhhcCHHHHHHHHHHHHhhhhcC
Q 026723 59 FVVVHTSLVELLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 59 ~I~i~~~ll~~l~~~El~aVlaHElgHi~~~ 89 (234)
.|.|+..+++..+++++..+|.|||+|+...
T Consensus 44 ~I~ls~~~~~~~~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 44 EIRLSPKLLDRNPEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred EEEECHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 7999999999989999999999999999874
No 28
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=95.77 E-value=0.021 Score=39.70 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCCCcEEEecC---------CCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcC
Q 026723 24 MTEAAEILNLEAPDLYVRQS---------PVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 24 v~~l~~~~~~~~p~v~v~~~---------~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~ 89 (234)
-.++...+|.+...|.|..+ ....||+.| ..|++..+-.. .+..+=..+|+||++|+.+.
T Consensus 7 r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G-----~~I~f~~g~~~-~~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 7 RSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVG-----NDIYFAPGKYN-PDSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEEC-----CEEEEcCCCcC-CCCCCcchhHhHHHHHHHhh
Confidence 34566678887777777543 245677775 25888776442 34445678999999999864
No 29
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=95.68 E-value=0.043 Score=44.72 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEecCCCCcEEE------ecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcH
Q 026723 19 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYT------LAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 19 ~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~------~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~ 91 (234)
.+.+.+.++.+.+..+...|+|+..+..|-+. .|..+....|+++- +-...+.++|.+++|||+-|..+...
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~~~~~l~~~iaHE~hH~~r~~~ 81 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDYSLEELPALIAHEYHHNCRYEQ 81 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 45667777877777765557665433222111 11122234677776 55566889999999999999986543
No 30
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.19 E-value=0.11 Score=42.80 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHcCCC------CCcEE-EecCCCCcEEEecccCCCCEEEEcHHHHhhcCH-----HHHHHHHHHHHhh
Q 026723 18 PELHQLMTEAAEILNLE------APDLY-VRQSPVPNAYTLAISGKKPFVVVHTSLVELLTR-----KELQAVLAHELGH 85 (234)
Q Consensus 18 p~l~~~v~~l~~~~~~~------~p~v~-v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~-----~El~aVlaHElgH 85 (234)
..|.+....+.+.+-.+ ...|. ++++-.--|++.| .+....|.++...++..++ .|+.+||-||+.|
T Consensus 28 ~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~g-d~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H 106 (205)
T PF04450_consen 28 QVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSG-DDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVH 106 (205)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEec-CCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 35566666666655442 12344 3566666788888 3455789999999998853 5999999999999
Q ss_pred hhcCcH
Q 026723 86 LKCDHG 91 (234)
Q Consensus 86 i~~~h~ 91 (234)
+.+..+
T Consensus 107 ~~Q~~~ 112 (205)
T PF04450_consen 107 CWQWDG 112 (205)
T ss_pred HhhcCC
Confidence 998775
No 31
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=94.92 E-value=0.088 Score=44.78 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEecC----------CCCcEEEecccCCCCEEEEcHHHHhhcC-------HHHHHHHHH
Q 026723 20 LHQLMTEAAEILNLE--APDLYVRQS----------PVPNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVLA 80 (234)
Q Consensus 20 l~~~v~~l~~~~~~~--~p~v~v~~~----------~~~nA~~~g~~g~~~~I~i~~~ll~~l~-------~~El~aVla 80 (234)
..+.+..+-...+.. .|++.++.. +..-.|-+ | ...++++...+.+.|+ +=.-+.|+|
T Consensus 96 tEd~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYC--P-~D~kvYlDlsFf~~m~~~fga~GdfAqaYViA 172 (295)
T COG2321 96 TEDTWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYC--P-ADTKVYLDLSFFDEMKTKFGASGDFAQAYVIA 172 (295)
T ss_pred HHHHHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeec--C-CCceEEEehhHHHHHHHHhcCCccHHHHHHHH
Confidence 445556666666543 677776542 22224444 2 3468999999999874 336789999
Q ss_pred HHHhhhhcC
Q 026723 81 HELGHLKCD 89 (234)
Q Consensus 81 HElgHi~~~ 89 (234)
||.||...+
T Consensus 173 HEVGHHVQn 181 (295)
T COG2321 173 HEVGHHVQN 181 (295)
T ss_pred hhhhHHHHH
Confidence 999997763
No 32
>PRK04860 hypothetical protein; Provisional
Probab=94.85 E-value=0.11 Score=41.11 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 20 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 20 l~~~v~~l~~~~~~~--~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
+..-++...+.++.+ .|.+..-. ....|-.+.+ ....|-++..+++.-++++|..||.||++|+..
T Consensus 9 ~~~~~~~a~~~f~~~f~~p~~~f~~-R~rtaG~~~l--~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 9 LRECLAQANLYFKRTFPEPKVSYTQ-RGTSAGTAWL--QSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEee-cchhhcchhH--hcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 444445555556666 44554422 1222333332 334699999999989999999999999999865
No 33
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=94.75 E-value=0.67 Score=38.58 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCCCcEEE--ecCCCCcEEEecccCCCCEEEEcHHHHhhc---------C--------HHHHHHHHHHHH
Q 026723 23 LMTEAAEILNLEAPDLYV--RQSPVPNAYTLAISGKKPFVVVHTSLVELL---------T--------RKELQAVLAHEL 83 (234)
Q Consensus 23 ~v~~l~~~~~~~~p~v~v--~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l---------~--------~~El~aVlaHEl 83 (234)
.++.+-..+.+|.+ |.| ......|||-- +..+.|.|.-.+++.. + .+-+.+++-||+
T Consensus 25 ~~~~in~~f~LP~~-l~i~~~~CGe~nA~yd---Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~ 100 (220)
T PF14247_consen 25 VADLINDYFPLPRD-LTIRFAECGEDNAFYD---PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHEL 100 (220)
T ss_pred HHHHHhhcCCCCCC-eEEEEeecCCCCCccC---CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHH
Confidence 33333334444433 444 34788999985 3567899988888743 1 134788999999
Q ss_pred hhhhcCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026723 84 GHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 141 (234)
Q Consensus 84 gHi~~~h~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~~ 141 (234)
||..-.. .-+|.+| +.|-.||.+|+.++
T Consensus 101 GHAlI~~--------------~~lPv~G----------------rEEDaaD~lAa~~l 128 (220)
T PF14247_consen 101 GHALIDD--------------LDLPVLG----------------REEDAADQLAALLL 128 (220)
T ss_pred HHHHHHH--------------hcCCccc----------------chhhHHHHHHHHHH
Confidence 9965322 1255544 26899999998876
No 34
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=93.55 E-value=0.054 Score=44.83 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred CCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026723 56 KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDR 135 (234)
Q Consensus 56 ~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~ 135 (234)
.+|.|+|+.. .+++.-.++|||||||+..+-... ..+ ..-+. ..--+..|.+|..
T Consensus 57 ~~~~I~iN~n----~~~~r~rFtlAHELGH~llH~~~~---~~~-----~~~~~-------------~~~~~~~E~~AN~ 111 (213)
T COG2856 57 EKPVIYINAN----NSLERKRFTLAHELGHALLHTDLN---TRF-----DAEPT-------------LQQDRKIEAEANA 111 (213)
T ss_pred cCceEEEeCC----CCHHHHHHHHHHHHhHHHhccccc---hhh-----hcccc-------------cchhHHHHHHHHH
Confidence 3578988876 388999999999999998743321 000 00010 0223557888899
Q ss_pred HHHHhcC
Q 026723 136 AALLVSQ 142 (234)
Q Consensus 136 ~a~~~~~ 142 (234)
+|+.+.-
T Consensus 112 FAa~lLm 118 (213)
T COG2856 112 FAAELLM 118 (213)
T ss_pred HHHHHhC
Confidence 9988863
No 35
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=93.09 E-value=0.28 Score=38.10 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCC--CCcEEEec--CCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 18 PELHQLMTEAAEILNLE--APDLYVRQ--SPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 18 p~l~~~v~~l~~~~~~~--~p~v~v~~--~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
..|.+.++++.....-+ .|+++.-. ...-.||.. +.-|-++.-+++...++.+..|+.|||+|+..
T Consensus 5 ~~L~~~~~~as~~~~r~~~~p~~~~n~Rg~taG~ayL~-----~~~I~lNP~ll~en~~~f~~~vV~HELaHl~l 74 (156)
T COG3091 5 RKLQQCVEQASLKFFRKFFRPKASYNQRGRTAGGAYLL-----KSEIRLNPKLLEENGEDFIEQVVPHELAHLHL 74 (156)
T ss_pred HHHHHHHHHHHHHhcCCCCCcceehhhhhhhcchhhcc-----ccccccCHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 46788888888877655 45555422 122233332 23699999999999999999999999999853
No 36
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.049 Score=50.69 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=34.1
Q ss_pred ecCCCCcEEEecccCCCCEEEEcHHHHhh--cCHH--------HHHHHHHHHHhhhhcC
Q 026723 41 RQSPVPNAYTLAISGKKPFVVVHTSLVEL--LTRK--------ELQAVLAHELGHLKCD 89 (234)
Q Consensus 41 ~~~~~~nA~~~g~~g~~~~I~i~~~ll~~--l~~~--------El~aVlaHElgHi~~~ 89 (234)
..-...|||-- +.+..||++.++|+- .+++ -|-+||||||||---.
T Consensus 446 M~pq~VNAYYn---p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDd 501 (654)
T COG3590 446 MPPQTVNAYYN---PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDD 501 (654)
T ss_pred CCHHHhhhhcC---CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccC
Confidence 34457899874 456789999999985 2322 3899999999998644
No 37
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=90.76 E-value=0.75 Score=34.77 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=22.9
Q ss_pred CcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 46 PNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 46 ~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
.-+.+.|. ++.+|++...--+..+.-- |.+||+||+.-
T Consensus 53 sya~~~g~--G~G~I~l~~~~~qgy~~~R---IaaHE~GHiLG 90 (132)
T PF02031_consen 53 SYASTDGL--GSGYIFLDYQQNQGYNSTR---IAAHELGHILG 90 (132)
T ss_dssp -EEEE-SS--S-EEEEEEHHHHHHS-HHH---HHHHHHHHHHT
T ss_pred cccccCCC--CcEEEEechHHhhCCccce---eeeehhccccC
Confidence 33555553 4678999876444444332 89999999863
No 38
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=90.67 E-value=1 Score=33.11 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHcCCC---CCcEEEecCCC--CcEE------------EecccCCCCEEEEcHHHHhhcCHHHHHHH
Q 026723 16 QLPELHQLMTEAAEILNLE---APDLYVRQSPV--PNAY------------TLAISGKKPFVVVHTSLVELLTRKELQAV 78 (234)
Q Consensus 16 ~~p~l~~~v~~l~~~~~~~---~p~v~v~~~~~--~nA~------------~~g~~g~~~~I~i~~~ll~~l~~~El~aV 78 (234)
..+.+.+.++.+.-++|+. ..+|+++-++. ..|+ ++|+.+. -.|-+-+.=++.|+.+|---|
T Consensus 5 R~~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~~~A~ARIwg~pki~~e~lglnP~-YviEl~sekF~rLs~~ekvKv 83 (133)
T COG4900 5 RLADVEADIKNAVVRLGLDYIFQVRVVVVYSPGSHSKAVARIWGIPKIFQEVLGLNPV-YVIELLSEKFKRLSCAEKVKV 83 (133)
T ss_pred ecccHHHHHHHHHHHhCcceeeeeeEEEEECCCCcceehhhhhcccHHHHHHhCCCCe-eeeeeehhhcCCCChHHHHHH
Confidence 3456777888888888876 45777765432 2232 2344321 133355555677899999999
Q ss_pred HHHHHhhhhcC
Q 026723 79 LAHELGHLKCD 89 (234)
Q Consensus 79 laHElgHi~~~ 89 (234)
+.||+.|+-..
T Consensus 84 iiHEllHIP~t 94 (133)
T COG4900 84 IIHELLHIPAT 94 (133)
T ss_pred HHHHHhcCccc
Confidence 99999999753
No 39
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=90.44 E-value=0.31 Score=40.18 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=25.8
Q ss_pred CEEEEcHHHHhhcCHHHHHHHHHHHHhhhh-cCcHHH
Q 026723 58 PFVVVHTSLVELLTRKELQAVLAHELGHLK-CDHGVW 93 (234)
Q Consensus 58 ~~I~i~~~ll~~l~~~El~aVlaHElgHi~-~~h~~~ 93 (234)
+.|.| .+ ++..+.+.++.||+|||||.. .||.-|
T Consensus 118 ~~I~I-~~-~~~~~~~~~~hvi~HEiGH~IGfRHTD~ 152 (211)
T PF12388_consen 118 KFIQI-YG-LSNYSVNVIEHVITHEIGHCIGFRHTDY 152 (211)
T ss_pred ceEEE-Ee-cCCCchhHHHHHHHHHhhhhccccccCc
Confidence 36777 33 356688899999999999987 677654
No 40
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=90.40 E-value=0.3 Score=46.68 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=35.2
Q ss_pred CcEEEecCCCCcEEEecccC-CCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCc
Q 026723 36 PDLYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 36 p~v~v~~~~~~nA~~~g~~g-~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h 90 (234)
.+++--++..+.|||.|... .+|+|.++ ....-.=..+|+||+||..|..
T Consensus 345 iD~~~~~gKrsGaYs~~~~~~~~p~IlmN-----~~gt~~dV~TLaHElGHs~Hs~ 395 (598)
T COG1164 345 IDVYPRKGKRSGAYSIGFYKGDHPFILMN-----YDGTLRDVFTLAHELGHSVHSY 395 (598)
T ss_pred eeccCCCCCCCCcccCCCCCCCCCeEEEe-----CCCchhHHHHHHHHccHHHHHH
Confidence 34555567789999998876 67888544 2333333578999999998764
No 41
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=88.93 E-value=7.8 Score=32.27 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcH
Q 026723 22 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 22 ~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~ 91 (234)
+.-+.+.++.|+...+|..+++.--+ -+ +++.+.|-++..-...-| =--.+|-|||.||..++..
T Consensus 41 e~Ar~iL~~~gl~~V~Ve~~~G~LtD--HY--dP~~k~vrLS~~vy~~~S-iaAvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 41 EVARHILDRNGLSDVRVERVPGELTD--HY--DPRNKVVRLSEDVYNGRS-IAAVAVAAHEVGHAIQHAE 105 (222)
T ss_pred HHHHHHHHHCCCCCeeEEEeCCCCCC--Cc--CCCCCEEEeCCccCCCCC-HHHHHHHHHHHhHHHhccc
Confidence 35566777888876566665531111 11 335567777777543222 2346799999999998764
No 42
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=88.16 E-value=0.44 Score=45.35 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=31.3
Q ss_pred ecCCCCcEEEecccCCCCEEEEc-HHHHhhcCHHHHHHHHHHHHhhhhcCc
Q 026723 41 RQSPVPNAYTLAISGKKPFVVVH-TSLVELLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 41 ~~~~~~nA~~~g~~g~~~~I~i~-~~ll~~l~~~El~aVlaHElgHi~~~h 90 (234)
.++....|||.|+++..|+|+++ ++ +- .=...|+||+||..|.-
T Consensus 349 r~gK~~Ga~~~~~~~~~p~il~N~~~-----~~-~dv~TLaHElGHa~H~~ 393 (591)
T TIGR00181 349 NKGKRSGAYSIGGYKVKPYILMNWDG-----TL-NSVFTLAHELGHSMHSY 393 (591)
T ss_pred CCCCCCCcccCCCCCCCCeEEEecCC-----Cc-chHHHHHHHhhhHHHHH
Confidence 45677889999987777888664 22 22 23467999999997653
No 43
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=84.81 E-value=0.99 Score=32.90 Aligned_cols=31 Identities=32% Similarity=0.204 Sum_probs=22.0
Q ss_pred CEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcH
Q 026723 58 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 58 ~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~ 91 (234)
+.|++.. ...+++.+..+|+||++|......
T Consensus 11 ~~i~~~~---~~~~~~~~~~~l~HE~~H~~~~~~ 41 (128)
T PF13485_consen 11 NRIVVYF---QGSDEDWLDRVLAHELAHQWFGNY 41 (128)
T ss_pred CEEEEec---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455433 345777889999999999976554
No 44
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=84.06 E-value=4.9 Score=32.54 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.7
Q ss_pred cCHHHHHHHHHHHHhhhhcCcHH
Q 026723 70 LTRKELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 70 l~~~El~aVlaHElgHi~~~h~~ 92 (234)
++-+++..|+-|||+|+.++..-
T Consensus 77 l~~~~i~~t~lHELaH~~~~~H~ 99 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGPHD 99 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCCcc
Confidence 47899999999999999977543
No 45
>PF14891 Peptidase_M91: Effector protein
Probab=83.99 E-value=3.3 Score=33.01 Aligned_cols=17 Identities=35% Similarity=0.204 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhc
Q 026723 72 RKELQAVLAHELGHLKC 88 (234)
Q Consensus 72 ~~El~aVlaHElgHi~~ 88 (234)
+..=..+|+|||+|..+
T Consensus 100 ~~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAYD 116 (174)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34567899999999875
No 46
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=82.72 E-value=0.81 Score=35.16 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhhhh-cCc
Q 026723 71 TRKELQAVLAHELGHLK-CDH 90 (234)
Q Consensus 71 ~~~El~aVlaHElgHi~-~~h 90 (234)
+..++..|+.|||||.. .+|
T Consensus 101 ~~~~~~~v~~HEiGHaLGL~H 121 (154)
T PF00413_consen 101 SGNDLQSVAIHEIGHALGLDH 121 (154)
T ss_dssp SSEEHHHHHHHHHHHHTTBES
T ss_pred hhhhhhhhhhhccccccCcCc
Confidence 44579999999999985 344
No 47
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=82.55 E-value=2.4 Score=36.18 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=27.2
Q ss_pred EEcHHHHhhc---CHHHHHHHHHHHHhhhh---cCcHHHHH
Q 026723 61 VVHTSLVELL---TRKELQAVLAHELGHLK---CDHGVWLT 95 (234)
Q Consensus 61 ~i~~~ll~~l---~~~El~aVlaHElgHi~---~~h~~~~~ 95 (234)
.+.++||..+ ++.+|+.+|=||++|-+ ++|+..+-
T Consensus 180 wFdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNE 220 (376)
T COG4324 180 WFDDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNE 220 (376)
T ss_pred ccccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhH
Confidence 3566777764 88999999999999976 66766553
No 48
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=82.26 E-value=0.87 Score=35.39 Aligned_cols=16 Identities=50% Similarity=0.713 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 026723 72 RKELQAVLAHELGHLK 87 (234)
Q Consensus 72 ~~El~aVlaHElgHi~ 87 (234)
..++..|+.|||||..
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 4589999999999987
No 49
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=81.92 E-value=0.95 Score=38.20 Aligned_cols=18 Identities=50% Similarity=0.495 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhhhhc
Q 026723 71 TRKELQAVLAHELGHLKC 88 (234)
Q Consensus 71 ~~~El~aVlaHElgHi~~ 88 (234)
.....+.++||||||-.-
T Consensus 163 ~~~~~a~t~AHElGHnlG 180 (244)
T cd04270 163 PTKESDLVTAHELGHNFG 180 (244)
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 345688999999999874
No 50
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=81.10 E-value=2.9 Score=33.43 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=49.7
Q ss_pred CceecCCCCchHHHHHHHHHHHHcCCCC--------CcEEEecCCC----CcEEEecccC------CCCEEEEcHHHHhh
Q 026723 8 TSVLVSKNQLPELHQLMTEAAEILNLEA--------PDLYVRQSPV----PNAYTLAISG------KKPFVVVHTSLVEL 69 (234)
Q Consensus 8 ~~~~v~~~~~p~l~~~v~~l~~~~~~~~--------p~v~v~~~~~----~nA~~~g~~g------~~~~I~i~~~ll~~ 69 (234)
+...+++.+...+++.+++..+..++.. ..|.+..... .-+++. +++ ....|.+.......
T Consensus 27 ~~~~~~~~~~~~i~~A~~~w~~~~~l~F~e~~~~~~adI~i~~~~~~~~~~~g~a~-~p~~~~~~~~~g~i~~~~~~~~~ 105 (186)
T cd04277 27 NTAALSAAQQAAARDALEAWEDVADIDFVEVSDNSGADIRFGNSSDPDGNTAGYAY-YPGSGSGTAYGGDIWFNSSYDTN 105 (186)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhcCceeEECCCCCcceEEEEeccCCCCCccEEEE-CCCCCccccccceeEEecCcccc
Confidence 4456677777888888888888877641 2344443222 233333 121 22356666554432
Q ss_pred c--CHHHHHHHHHHHHhhhh-cCcH
Q 026723 70 L--TRKELQAVLAHELGHLK-CDHG 91 (234)
Q Consensus 70 l--~~~El~aVlaHElgHi~-~~h~ 91 (234)
. .......++.|||||.. .+|+
T Consensus 106 ~~~~g~~~~~t~~HEiGHaLGL~H~ 130 (186)
T cd04277 106 SDSPGSYGYQTIIHEIGHALGLEHP 130 (186)
T ss_pred cCCCChhhHHHHHHHHHHHhcCCCC
Confidence 1 24567899999999987 3454
No 51
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=81.10 E-value=3.1 Score=33.30 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHcCCC-CCc--EEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 17 LPELHQLMTEAAEILNLE-APD--LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 17 ~p~l~~~v~~l~~~~~~~-~p~--v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
.|.+.=+++.+. ++|-+ .++ +....-+. + ..-|+.+.++.|+|=..-+ -+..++.-+|+|||-|..-
T Consensus 15 sp~v~fl~~~~~-~~gc~~~~~~~i~c~~C~~-~-~~Ggf~p~~~~I~lC~N~~--~~~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 15 SPTVRFLMEALK-KLGCPPVPPRHIKCEPCDS-S-VSGGFDPSKKGIVLCQNRI--RSQGHLEDTLTHELIHAYD 84 (173)
T ss_pred CcHHHHHHHHHH-HcCCCCCCCCCeEEEECcC-C-CcCCccCCCCCEEEeeCCC--CCHHHHHHHHHHHHHHHHH
Confidence 466666666654 56655 332 33333222 1 3334433244566655432 4889999999999999864
No 52
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=80.54 E-value=0.98 Score=42.69 Aligned_cols=44 Identities=27% Similarity=0.451 Sum_probs=29.9
Q ss_pred ecCCCCcEEEecccC-CCCEEEEc-HHHHhhcCHHHHHHHHHHHHhhhhcCc
Q 026723 41 RQSPVPNAYTLAISG-KKPFVVVH-TSLVELLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 41 ~~~~~~nA~~~g~~g-~~~~I~i~-~~ll~~l~~~El~aVlaHElgHi~~~h 90 (234)
.++....|||.++++ ..|+|+++ ++ +-+++ .+|+||+||..|..
T Consensus 307 r~gK~~Gayc~~~~~~~~P~I~~Nf~~-----t~~dv-~TL~HElGHa~H~~ 352 (549)
T TIGR02289 307 RKGKAAGGYCTYLPKYKAPFIFSNFNG-----TSGDI-DVLTHEAGHAFHVY 352 (549)
T ss_pred CCCCCCCcccCCCCCCCCcEEEEeCCC-----ChhHH-HHHHHHhhHHHHHH
Confidence 346678899998754 46777654 22 33333 56899999998654
No 53
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=80.03 E-value=1.2 Score=34.74 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=20.8
Q ss_pred CCEEEEcHHHHhh----cCHHHHHHHHHHHHhhhh
Q 026723 57 KPFVVVHTSLVEL----LTRKELQAVLAHELGHLK 87 (234)
Q Consensus 57 ~~~I~i~~~ll~~----l~~~El~aVlaHElgHi~ 87 (234)
+..|.+....+.. .+...+.+++.|||||..
T Consensus 72 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 72 TGEILLARVYLYSSFVEYSGARLRNTAEHELGHAL 106 (165)
T ss_pred CccEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3456555543321 244679999999999987
No 54
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=79.98 E-value=2.7 Score=42.04 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhcCcH
Q 026723 73 KELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 73 ~El~aVlaHElgHi~~~h~ 91 (234)
..+..|+|||++|-..|+-
T Consensus 281 ~~i~~VIaHElaHqWfGNl 299 (863)
T TIGR02414 281 ERIESVIAHEYFHNWTGNR 299 (863)
T ss_pred HHHHHHHHHHHHHHHhcce
Confidence 3588999999999998863
No 55
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.66 E-value=2.5 Score=36.92 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=32.3
Q ss_pred EEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHH
Q 026723 59 FVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 93 (234)
Q Consensus 59 ~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~ 93 (234)
.++.+...+..++.+++.++|-||+-|+...|..+
T Consensus 53 ~~y~NPei~~~~p~~~~~aLl~HEV~Hi~l~Hi~r 87 (396)
T COG3864 53 TMYFNPEIFLNCPISEMKALLKHEVYHIMLNHIKR 87 (396)
T ss_pred EEEeCHHHHccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999763
No 56
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=79.57 E-value=3.8 Score=40.86 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCC--CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhh--cC---HHHHHHHHHHHHhhhhcCcH
Q 026723 21 HQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL--LT---RKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 21 ~~~v~~l~~~~~~~--~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~--l~---~~El~aVlaHElgHi~~~h~ 91 (234)
.+.++-+.+.+|++ .|+.-++-.+..++.++- +-+.|.+...++.. .+ .+.+..|++||++|...|+.
T Consensus 229 ~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaME---n~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnl 303 (831)
T TIGR02412 229 RQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAME---NAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDL 303 (831)
T ss_pred HHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccc---ccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence 44555566778876 344444333443332221 11246666554421 12 23577999999999998863
No 57
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=78.70 E-value=10 Score=26.08 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred CchHHHHHH----HHHHHHcCCCCC---cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 16 QLPELHQLM----TEAAEILNLEAP---DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 16 ~~p~l~~~v----~~l~~~~~~~~p---~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+|+.++.+ ...++.+|+..| +|.|++++.-.-+.. +| .+|.- .+|++||++|-|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~~~~~lV-lP-~~P~~--------~lse~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESPTVLYLV-LP-VNPDI--------ELTDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCCCeEEEE-ec-CCCCC--------CCCHHHHHHhhC
Confidence 456666666 567777899855 566666543222222 11 22322 799999999864
No 58
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=77.99 E-value=5.7 Score=35.33 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEecCCCCcEEEecccCCCCEEEEcHHHH-hh--c----CHHHHHHHHHHHHhhhhcCc
Q 026723 20 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLV-EL--L----TRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 20 l~~~v~~l~~~~~~~--~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll-~~--l----~~~El~aVlaHElgHi~~~h 90 (234)
+.+.++-+.+.+|++ .+++-++..+..+..+.... +.|.+....+ .. . ...++..+||||++|..-|+
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~---g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn 310 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW---GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGN 310 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T---TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEecccccccccc---ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhcc
Confidence 445555666778875 34444443333222222212 2456655543 11 1 23579999999999999887
Q ss_pred H
Q 026723 91 G 91 (234)
Q Consensus 91 ~ 91 (234)
.
T Consensus 311 ~ 311 (390)
T PF01433_consen 311 L 311 (390)
T ss_dssp T
T ss_pred C
Confidence 3
No 59
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=77.32 E-value=1.2 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhhhh
Q 026723 71 TRKELQAVLAHELGHLK 87 (234)
Q Consensus 71 ~~~El~aVlaHElgHi~ 87 (234)
+...-.-++|||+||..
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 46778899999999976
No 60
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=76.94 E-value=2.2 Score=38.59 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=28.0
Q ss_pred ecCCCCcEEEeccc-CCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCc
Q 026723 41 RQSPVPNAYTLAIS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 41 ~~~~~~nA~~~g~~-g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h 90 (234)
.++....|||.+++ +..|+|+.+- -. +-++ ...|+||+||..+..
T Consensus 192 r~gK~~gaf~~~~~~~~~p~i~~n~--~~--~~~~-v~tl~HE~GHa~h~~ 237 (427)
T cd06459 192 RKGKRSGAYCTGLPPGKHPFILMNF--NG--TLDD-VFTLAHELGHAFHSY 237 (427)
T ss_pred CCCCCCCeecCCCCCCCCCeEEecC--CC--Chhh-HHHHHHHhhHHHHHH
Confidence 34556779999875 3456664432 11 2333 567899999976543
No 61
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=76.37 E-value=2.6 Score=40.18 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=30.3
Q ss_pred EEEecCCCCcEEEecccCC-CCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcC
Q 026723 38 LYVRQSPVPNAYTLAISGK-KPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 38 v~v~~~~~~nA~~~g~~g~-~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~ 89 (234)
++-.++....|||.|+++. .|+|+++-. . +-++ ...|+||+||..|.
T Consensus 342 ~~~r~gK~~Ga~~~~~~~~~~p~i~~N~~--~--~~~~-v~TL~HE~GHa~H~ 389 (587)
T TIGR02290 342 AEPRPGKRGGAFCTGFPPSKEPRVLMNYD--G--SRRD-VSTLAHELGHAYHS 389 (587)
T ss_pred cCCCCCCCCCcccCCCCCCCCCEEEEecC--C--Cchh-HHHHHHHhhHHHHH
Confidence 4444567788999987653 477665411 1 2233 35689999999974
No 62
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=75.84 E-value=6.1 Score=35.89 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCH---HHHHHHHHHHHhhhhcCcH
Q 026723 21 HQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTR---KELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~---~El~aVlaHElgHi~~~h~ 91 (234)
.+.-+++++.+|+...+-.| +...+.||.|+.+..++| ++. .++ -.=.+-++||+||..+...
T Consensus 110 ~~~~~~~~~~~g~df~~gri--D~s~hpF~~~~~~~dvRI--tt~----y~~~d~~~~l~t~iHE~GHalye~~ 175 (396)
T cd06460 110 EALGRELLEALGFDFDRGRL--DVSAHPFTGGLGPGDVRI--TTR----YDENDFRSALFSTIHETGHALYEQG 175 (396)
T ss_pred HHHHHHHHHHhCCcccCCee--ecCCCCCCCCCCCCCceE--Eee----eCCcchHHHHHHHHHHhhHHHHHhc
Confidence 34455788888887665555 234456998875545444 332 322 2233467899999988773
No 63
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=75.41 E-value=2.1 Score=34.51 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhh
Q 026723 72 RKELQAVLAHELGHLK 87 (234)
Q Consensus 72 ~~El~aVlaHElgHi~ 87 (234)
....+.++|||+||..
T Consensus 128 ~~~~a~~~AHElGH~l 143 (194)
T cd04269 128 LLLFAVTMAHELGHNL 143 (194)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 4577999999999987
No 64
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=75.35 E-value=1.5 Score=34.24 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=22.8
Q ss_pred cCCCCcEEEecccCCCCEEEEcHHHHhhcCHHH-HHHHHHHHHhhhhc
Q 026723 42 QSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE-LQAVLAHELGHLKC 88 (234)
Q Consensus 42 ~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~E-l~aVlaHElgHi~~ 88 (234)
.....|||.-| . .++..+|--..+.+=. =.=|+||||+|-.-
T Consensus 106 g~~~~NAfW~g---~--~m~yGdG~~~~f~~~~~~lDVvaHEltHGVt 148 (150)
T PF01447_consen 106 GKNYNNAFWNG---S--QMVYGDGDGQIFKPFASSLDVVAHELTHGVT 148 (150)
T ss_dssp SSSTT-EEE-S---S--SEEEE---SSSBS-GGG-HHHHHHHHHHHHH
T ss_pred CCCccCccccC---C--EEEEECCCCcccccCccccceeeeccccccc
Confidence 45678999965 2 4777776543333321 13499999999653
No 65
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=74.96 E-value=2.7 Score=34.15 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCEEEEcHHHHhhc--C--------HHHHHHHHHHHHhhhhcCcHH
Q 026723 57 KPFVVVHTSLVELL--T--------RKELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 57 ~~~I~i~~~ll~~l--~--------~~El~aVlaHElgHi~~~h~~ 92 (234)
...|+|+.++|..- + -.-|-+||||||.|..-.+..
T Consensus 8 ~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g~ 53 (206)
T PF01431_consen 8 FNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEGI 53 (206)
T ss_dssp TTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTGG
T ss_pred cCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 45788888887641 1 235899999999998866543
No 66
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=74.65 E-value=1.6 Score=32.22 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhh
Q 026723 76 QAVLAHELGHLK 87 (234)
Q Consensus 76 ~aVlaHElgHi~ 87 (234)
..+++||+||..
T Consensus 108 ~~~~~HEiGH~l 119 (124)
T PF13582_consen 108 VDTFAHEIGHNL 119 (124)
T ss_dssp TTHHHHHHHHHT
T ss_pred ceEeeehhhHhc
Confidence 389999999975
No 67
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=74.29 E-value=2.4 Score=38.91 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCCCcEEEecccCC-------CCEEEEcHHHHh-------hcCHHHHHHHHHHHHhhhhcC
Q 026723 43 SPVPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 43 ~~~~nA~~~g~~g~-------~~~I~i~~~ll~-------~l~~~El~aVlaHElgHi~~~ 89 (234)
+....|++.++.++ .|..+|...+-. .|+-+++ ..|+||+||..|.
T Consensus 197 gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v-~tLfHE~GHa~H~ 256 (458)
T PF01432_consen 197 GKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLLSHDDV-ETLFHEFGHAMHS 256 (458)
T ss_dssp TS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B-SHHHH-HHHHHHHHHHHHH
T ss_pred CCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCccChhhH-HHHHHHHhHHHHH
Confidence 45567888876552 134444433333 2466777 6789999998863
No 68
>PRK14015 pepN aminopeptidase N; Provisional
Probab=73.06 E-value=5.6 Score=39.92 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhcCcHH
Q 026723 74 ELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 74 El~aVlaHElgHi~~~h~~ 92 (234)
.+..|+|||++|-..|+-.
T Consensus 295 ~i~~vIaHElaHqWFGNlV 313 (875)
T PRK14015 295 RIESVIAHEYFHNWTGNRV 313 (875)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 4889999999999988743
No 69
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=72.81 E-value=1.9 Score=33.60 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=19.5
Q ss_pred CEEEEcHHHHhhc----CHHHHHHHHHHHHhhhh
Q 026723 58 PFVVVHTSLVELL----TRKELQAVLAHELGHLK 87 (234)
Q Consensus 58 ~~I~i~~~ll~~l----~~~El~aVlaHElgHi~ 87 (234)
..|.++..-.-.. ....+..|+.|||||..
T Consensus 86 g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 86 GDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred eeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 4566665322111 23569999999999986
No 70
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=72.54 E-value=3 Score=33.71 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHHHHhhhh
Q 026723 70 LTRKELQAVLAHELGHLK 87 (234)
Q Consensus 70 l~~~El~aVlaHElgHi~ 87 (234)
-+....+.++|||+||..
T Consensus 126 ~~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 126 RSGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 356788999999999975
No 71
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=72.48 E-value=1.9 Score=34.30 Aligned_cols=14 Identities=43% Similarity=0.437 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhhc
Q 026723 75 LQAVLAHELGHLKC 88 (234)
Q Consensus 75 l~aVlaHElgHi~~ 88 (234)
-.-++|||+||..-
T Consensus 111 ~~~~~aHElGH~lG 124 (173)
T PF13574_consen 111 GIDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred eeeeehhhhHhhcC
Confidence 34569999999873
No 72
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=71.07 E-value=3.3 Score=38.42 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCCCcEEEecccCCC---------CEEEEcHHHHhh-------cCHHHHHHHHHHHHhhhhcC
Q 026723 43 SPVPNAYTLAISGKK---------PFVVVHTSLVEL-------LTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 43 ~~~~nA~~~g~~g~~---------~~I~i~~~ll~~-------l~~~El~aVlaHElgHi~~~ 89 (234)
+....|++.++.+.+ |.++|-..+-.. |+-+++ ..|+||+||..|.
T Consensus 216 gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll~~~~V-~TLfHEfGHalH~ 277 (472)
T cd06455 216 GKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLLRHDEV-ETFFHEFGHVIHH 277 (472)
T ss_pred CCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHH
Confidence 345678887765443 323332222211 234555 5689999999874
No 73
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=69.55 E-value=2.7 Score=37.21 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.0
Q ss_pred cHHHHhhc---CHHHHHHHHHHHHhhhh---cCcHHHH
Q 026723 63 HTSLVELL---TRKELQAVLAHELGHLK---CDHGVWL 94 (234)
Q Consensus 63 ~~~ll~~l---~~~El~aVlaHElgHi~---~~h~~~~ 94 (234)
.++++..+ ++.+|+.+|=|||+|-. .+|+..+
T Consensus 150 ~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FN 187 (337)
T PF10023_consen 150 DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFN 187 (337)
T ss_pred CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhh
Confidence 55566654 78999999999999965 6777655
No 74
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=69.05 E-value=2.3 Score=34.15 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhh
Q 026723 72 RKELQAVLAHELGHLK 87 (234)
Q Consensus 72 ~~El~aVlaHElgHi~ 87 (234)
......++|||+||..
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 4577889999999987
No 75
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=67.42 E-value=9.4 Score=34.27 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHHcCCC-CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHh
Q 026723 16 QLPELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 84 (234)
Q Consensus 16 ~~p~l~~~v~~l~~~~~~~-~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElg 84 (234)
...+..+.+++.++..+.. ..+|.+.++-..+|.+.| ..|.|+.+. .+++.++.+++-||+|
T Consensus 135 ~A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~-----~~l~i~~~a--~fs~~~l~~L~~HEig 197 (366)
T TIGR02421 135 SATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSG-----DKLKLNSDA--MFSERDLEALIHHEIG 197 (366)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccC-----CeEEECCCC--CcCHHHHHHHHHHhHH
Confidence 4557888888888888776 233444343345666543 268888864 3799999999999998
No 76
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=67.18 E-value=3.2 Score=34.24 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhh
Q 026723 74 ELQAVLAHELGHLK 87 (234)
Q Consensus 74 El~aVlaHElgHi~ 87 (234)
..+.++|||+||..
T Consensus 144 ~~~~~~AHElGH~l 157 (220)
T cd04272 144 YGVYTMTHELAHLL 157 (220)
T ss_pred ccHHHHHHHHHHHh
Confidence 45899999999987
No 77
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=67.00 E-value=1.9 Score=36.07 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=10.1
Q ss_pred HHHHHHHhhhh
Q 026723 77 AVLAHELGHLK 87 (234)
Q Consensus 77 aVlaHElgHi~ 87 (234)
.++||||||..
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 69999999987
No 78
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=66.89 E-value=5.6 Score=35.29 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCCcEEEecccC----CCCEEEEcHHHHhh-------cCHHHHHHHHHHHHhhhhcCc
Q 026723 43 SPVPNAYTLAISG----KKPFVVVHTSLVEL-------LTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 43 ~~~~nA~~~g~~g----~~~~I~i~~~ll~~-------l~~~El~aVlaHElgHi~~~h 90 (234)
+....||+.++.+ ..+.+.|....-.. ++-+++. .|.||+||..+.-
T Consensus 112 gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~-tl~HE~GHa~h~~ 169 (365)
T cd06258 112 GKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLLGHDDIN-TLFHEFGHAVHFL 169 (365)
T ss_pred CCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcCCHHHHH-HHHHHHhHHHHHH
Confidence 3456888887642 13566666655442 4556664 4789999999753
No 79
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=66.70 E-value=3.1 Score=32.53 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=18.3
Q ss_pred EEEEcHHHHh-hcCHHHHHHHHHHHHhhhh-cCcHH
Q 026723 59 FVVVHTSLVE-LLTRKELQAVLAHELGHLK-CDHGV 92 (234)
Q Consensus 59 ~I~i~~~ll~-~l~~~El~aVlaHElgHi~-~~h~~ 92 (234)
.|++....+. ..+.....-+|.||+||+. ..|+.
T Consensus 52 ~vv~~~~~l~~~~~~~~~g~TltHEvGH~LGL~HtF 87 (154)
T PF05572_consen 52 GVVINYRYLGGNNSQYNFGKTLTHEVGHWLGLYHTF 87 (154)
T ss_dssp EEGGGSSSSTT--TTS-SSHHHHHHHHHHTT---TT
T ss_pred EEEEcCcccCCCCCccccccchhhhhhhhhcccccc
Confidence 3455433333 2344556889999999998 34543
No 80
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=66.33 E-value=2.9 Score=34.26 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=9.5
Q ss_pred HHHHHHHhhhh
Q 026723 77 AVLAHELGHLK 87 (234)
Q Consensus 77 aVlaHElgHi~ 87 (234)
-+++||+||..
T Consensus 139 ~~~aHEiGH~l 149 (206)
T PF13583_consen 139 QTFAHEIGHNL 149 (206)
T ss_pred hHHHHHHHHHh
Confidence 45999999987
No 81
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=65.96 E-value=2.8 Score=32.56 Aligned_cols=16 Identities=50% Similarity=0.623 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhh
Q 026723 72 RKELQAVLAHELGHLK 87 (234)
Q Consensus 72 ~~El~aVlaHElgHi~ 87 (234)
......+++|||||..
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 4578999999999987
No 82
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=64.90 E-value=15 Score=36.95 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHcCCC--CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhc-------CHHHHHHHHHHHHhhhhcCcH
Q 026723 24 MTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-------TRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 24 v~~l~~~~~~~--~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l-------~~~El~aVlaHElgHi~~~h~ 91 (234)
++-..+-++++ .|++=++-.++..+-++--.| .|......+-.= +...++.|+|||+||...|..
T Consensus 267 L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwG---Lvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNL 340 (882)
T KOG1046|consen 267 LEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWG---LVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNL 340 (882)
T ss_pred HHHHHHHhCCCCCCccccEEecCCccccchhcCc---ceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33344456765 565555544555544442222 244443333111 145699999999999998863
No 83
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=63.56 E-value=6.4 Score=32.18 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred CEEEEcHHHHhhcC-------HHHHHHHHHHHHhhhh
Q 026723 58 PFVVVHTSLVELLT-------RKELQAVLAHELGHLK 87 (234)
Q Consensus 58 ~~I~i~~~ll~~l~-------~~El~aVlaHElgHi~ 87 (234)
..|.+..+.+.... .+-+..+++||+||..
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~l 128 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTL 128 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888775532 2458999999999976
No 84
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=61.90 E-value=24 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=25.4
Q ss_pred cccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHH
Q 026723 52 AISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 52 g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~ 92 (234)
|+.++++ |++-..-| -+.+++.-|++|||-|.--.+-+
T Consensus 71 Gy~~~~g-IvlCqN~l--~~q~h~n~vv~HElIH~fDd~r~ 108 (194)
T KOG3314|consen 71 GYTPGRG-IVLCQNRL--TIQDHVNQVVIHELIHAFDDCRA 108 (194)
T ss_pred CccCCCc-eEEecccc--chHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444 66555422 26789999999999999865543
No 85
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=61.76 E-value=4 Score=30.87 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhh
Q 026723 76 QAVLAHELGHLK 87 (234)
Q Consensus 76 ~aVlaHElgHi~ 87 (234)
.+|+.||+||..
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 359999999986
No 86
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=60.54 E-value=7 Score=37.98 Aligned_cols=45 Identities=29% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCCcEEEecccCCCCEEEEcHHHHhh----------cCHHHHHHHHHHHHhhhhcCcH
Q 026723 44 PVPNAYTLAISGKKPFVVVHTSLVEL----------LTRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 44 ~~~nA~~~g~~g~~~~I~i~~~ll~~----------l~~~El~aVlaHElgHi~~~h~ 91 (234)
...|||-.. .+..|++..++++. ++=.-+-+||||||+|.--.++
T Consensus 480 ~~~na~Y~~---~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~G 534 (687)
T KOG3624|consen 480 AQVNAFYSP---EKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQG 534 (687)
T ss_pred ceeeccccC---CCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhcccccc
Confidence 356776653 34578999998885 3445689999999999765544
No 87
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=60.44 E-value=5.2 Score=37.61 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCEEE-EcHHHHhhcCHHHHHHHHHHHHhhhhcCc
Q 026723 57 KPFVV-VHTSLVELLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 57 ~~~I~-i~~~ll~~l~~~El~aVlaHElgHi~~~h 90 (234)
.|++. ++..|| -.++-+.-||||||+|-..|-
T Consensus 271 NPcltF~TpTll--aGDrsl~~vIaHEIAHSWtGN 303 (613)
T KOG1047|consen 271 NPCLTFVTPTLL--AGDRSLVDVIAHEIAHSWTGN 303 (613)
T ss_pred Ccceeeecchhh--cCCcchhhHHHHHhhhhhccc
Confidence 45454 444444 467788999999999988773
No 88
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=59.68 E-value=5.7 Score=32.38 Aligned_cols=66 Identities=17% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcHHH
Q 026723 23 LMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 93 (234)
Q Consensus 23 ~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~~~ 93 (234)
.-+.+.+.-|+...+|-.+++.- +=-.+++++.+-++..-...-+- .-.+|-|||.||..+.+..+
T Consensus 45 vAr~iLd~nGl~dV~Ve~v~G~L----TDHYDP~~kvvrLSe~~y~g~Si-a~~aVAAHEVGHAiQd~~~Y 110 (226)
T COG2738 45 VARMILDENGLYDVPVEEVPGTL----TDHYDPRRKVVRLSEANYYGPSI-AAIAVAAHEVGHAIQDQEDY 110 (226)
T ss_pred HHHHHHhhcCCccceeeeecCCc----ccccChhhheeeccccccCCccH-HHHHHHHHHhhHHHhhhccc
Confidence 34455666666533344443211 10113455566666665443332 34689999999999876544
No 89
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=57.47 E-value=14 Score=29.87 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHHHcCCC------CCcEEE-ecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 16 QLPELHQLMTEAAEILNLE------APDLYV-RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 16 ~~p~l~~~v~~l~~~~~~~------~p~v~v-~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
+...+++.+++..+...+. ....+| +......--.+|..++...|.|..+ +. -.+++.||++|..-
T Consensus 20 ~~~~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~~~~gC~S~vG~~~g~q~i~l~~~----c~---~~~~i~HEl~HaLG 92 (191)
T PF01400_consen 20 QRQRIRKAMDEWEKNTCIRFVERTENEDDYISFSNGSGCWSYVGRQGGEQTINLGDG----CF---SVGTILHELGHALG 92 (191)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEE-SSSSSSEEEEESSSSEEEESS--SSEEEEEE-TT----C----SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCceEEEeecCccccchhhhcCcceeEEecce----eC---CccchHHHHHHHHh
Confidence 3346888888888877654 111233 2222222223465545556666532 21 35699999999873
No 90
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=56.30 E-value=11 Score=34.60 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCcEEEecccCC-------CCEEEEcHHHHh-------hcCHHHHHHHHHHHHhhhhcCc
Q 026723 45 VPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 45 ~~nA~~~g~~g~-------~~~I~i~~~ll~-------~l~~~El~aVlaHElgHi~~~h 90 (234)
..+|++.++.+. .|.+++.-.+-. .|+-+++. .|.||+||..|.-
T Consensus 165 ~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~-tLfHEfGHalH~~ 223 (422)
T cd06456 165 RGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALLTHDEVT-TLFHEFGHALHHL 223 (422)
T ss_pred CCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCccCHHHHH-HHHHHHHHHHHHH
Confidence 356777765433 366665444322 23556665 5789999998743
No 91
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.85 E-value=26 Score=31.31 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=30.7
Q ss_pred cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhh
Q 026723 37 DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 85 (234)
Q Consensus 37 ~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgH 85 (234)
++|+-+....-|-+.-...--|++.|+...+ ++++++.+++.||+|=
T Consensus 210 ~~~~~~~~g~~Ara~v~~d~pp~lli~~~t~--~~~~~V~~Ll~HEigV 256 (434)
T COG3930 210 RVYESDTAGFVARAEVRDDLPPTLLIRRDTL--MEERRVRALLSHEIGV 256 (434)
T ss_pred eeeecCccchhhhHhhcCCCCcceeehhhhh--cCHHHHHHHHHhhhhe
Confidence 4555554454444331111234678888765 7999999999999984
No 92
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=54.32 E-value=31 Score=27.27 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEec-CCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAPDLYVRQ-SPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p~v~v~~-~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+-+++|+.+-++.--. -.-.+.+|+|..+..|.+.|+......+|++.+.-+|.
T Consensus 94 ~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind~~~~~lt~e~l~eil~ 154 (160)
T COG1905 94 EALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMINDDVYGRLTPEKLEEILE 154 (160)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEECCchhccCCHHHHHHHHH
Confidence 5677788888887643322100 01236678888788899999999999999999888775
No 93
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=53.46 E-value=25 Score=31.36 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHcCCC---CCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHH-hhhhcCc
Q 026723 17 LPELHQLMTEAAEILNLE---APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHEL-GHLKCDH 90 (234)
Q Consensus 17 ~p~l~~~v~~l~~~~~~~---~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHEl-gHi~~~h 90 (234)
..++...+++.+++..-. ...|.+.++-..+|.+.+ . .|.|+.+. .+++.++.+++-||+ .|+....
T Consensus 111 a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~---~--~l~I~~~~--~fs~~~l~~L~~HEigvH~lt~~ 181 (349)
T PF08014_consen 111 AEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSG---D--RLKINKNA--MFSERDLEALLHHEIGVHLLTTL 181 (349)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccC---C--eeEEcCCC--CcCHHHHHHHHHHhhhhhhcccc
Confidence 345666777766665221 223444444456776543 2 38888763 369999999999999 5777654
No 94
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=53.20 E-value=9.9 Score=30.81 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhc
Q 026723 73 KELQAVLAHELGHLKC 88 (234)
Q Consensus 73 ~El~aVlaHElgHi~~ 88 (234)
.+..+++.|||||..-
T Consensus 90 ~~~~~~i~HElgHaLG 105 (198)
T cd04327 90 PEFSRVVLHEFGHALG 105 (198)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 4567899999999873
No 95
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=52.05 E-value=17 Score=24.47 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+.+.++.. .+.+. ..+++|..+..|.+.|+......++++.+..++.
T Consensus 18 ~~l~~~l~~~L~~~--~v~l~-----~~~ClG~C~~gP~v~V~~~~~~~~t~~~i~~~~~ 70 (72)
T cd03082 18 EELLAALEAGLGPE--GVRVV-----RAPCVGRCERAPAALVGQRPVDGATPAAVAAAVE 70 (72)
T ss_pred HHHHHHHHHHhCCC--eEEEE-----ecCcCCccCCCCeEEECCEEeCCcCHHHHHHHHh
Confidence 34556666666653 33332 3456676667789999999999999998887763
No 96
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=51.22 E-value=10 Score=30.29 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhhc
Q 026723 75 LQAVLAHELGHLKC 88 (234)
Q Consensus 75 l~aVlaHElgHi~~ 88 (234)
+-+++.||+||..-
T Consensus 7 ~i~i~~HE~gH~~~ 20 (192)
T PF02163_consen 7 LISIVLHELGHALA 20 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 35789999999863
No 97
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=50.57 E-value=20 Score=28.66 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHHcCCC-CC----cEEE--ecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhh
Q 026723 13 SKNQLPELHQLMTEAAEILNLE-AP----DLYV--RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 85 (234)
Q Consensus 13 ~~~~~p~l~~~v~~l~~~~~~~-~p----~v~v--~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgH 85 (234)
++.+...+.+.+++..+...++ .+ ..|| ..+..-.+ .+|..++...|-|..+ + ...+++.||++|
T Consensus 13 ~~~~~~~I~~A~~~w~~~TcIrF~~~~~~~~~I~f~~~~Gc~S-~vG~~~~~q~i~l~~~----c---~~~g~v~HE~~H 84 (180)
T cd04280 13 DESDRSLILRAMREIESNTCIRFVPRTTEKDYIRIVKGSGCWS-YVGRVGGRQVVSLGSG----C---FSLGTIVHELMH 84 (180)
T ss_pred CHHHHHHHHHHHHHHHhCCcceEEECCCCCcEEEEEcCCCcce-ecCccCCceeEEeCCC----c---CcCchhHHHHHH
Confidence 3444455666666666655544 11 2333 33322111 2344344455555542 2 226899999999
Q ss_pred hhc
Q 026723 86 LKC 88 (234)
Q Consensus 86 i~~ 88 (234)
..-
T Consensus 85 alG 87 (180)
T cd04280 85 ALG 87 (180)
T ss_pred Hhc
Confidence 864
No 98
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=50.26 E-value=29 Score=24.97 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=22.7
Q ss_pred CEEEEcHHHHhhc--CH----HHHHHHHHHHHhhhhcCcH
Q 026723 58 PFVVVHTSLVELL--TR----KELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 58 ~~I~i~~~ll~~l--~~----~El~aVlaHElgHi~~~h~ 91 (234)
.+|+|+..=+... ++ +++.-++-||+||+...+.
T Consensus 50 ~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~~ 89 (97)
T PF06262_consen 50 DRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGISD 89 (97)
T ss_dssp EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred CEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4677777766654 44 4577788899999876543
No 99
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=49.96 E-value=3 Score=34.03 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhh
Q 026723 74 ELQAVLAHELGHLK 87 (234)
Q Consensus 74 El~aVlaHElgHi~ 87 (234)
..+.++||||||..
T Consensus 139 ~~a~~~aHElGH~L 152 (207)
T cd04273 139 SSAFTIAHELGHVL 152 (207)
T ss_pred eeEEeeeeechhhc
Confidence 35789999999987
No 100
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=49.31 E-value=39 Score=29.68 Aligned_cols=69 Identities=22% Similarity=0.170 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHc-CCCC-----CcEEEecCC--CCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhh-
Q 026723 17 LPELHQLMTEAAEIL-NLEA-----PDLYVRQSP--VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK- 87 (234)
Q Consensus 17 ~p~l~~~v~~l~~~~-~~~~-----p~v~v~~~~--~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~- 87 (234)
.-.+....+..++.. |+.. ..|||++.. ...+-...++|....+-++..-. .=.+++.||+||=.
T Consensus 90 ~~~~~~~Ad~~a~~~lG~~~~s~y~h~vyvlP~~~~C~w~Gla~v~G~~~~~~~~~~~~------~~~~~~~HElgHN~G 163 (314)
T PF05548_consen 90 WYGWADAADAAARAQLGVNAFSSYTHRVYVLPPGFACGWAGLATVPGSQSWLWISGYGV------QDWATIMHELGHNLG 163 (314)
T ss_pred HHHHHHHHHHHHHhhcCcccccccceEEEEcCCCCCCCceEEeecCCcceeeeecCccc------ccHHHHHHHhhhhcc
Confidence 345666666666665 6632 258887743 22221112222222222221101 11249999999965
Q ss_pred cCcH
Q 026723 88 CDHG 91 (234)
Q Consensus 88 ~~h~ 91 (234)
..|.
T Consensus 164 L~Ha 167 (314)
T PF05548_consen 164 LWHA 167 (314)
T ss_pred cccc
Confidence 3343
No 101
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=48.58 E-value=11 Score=28.20 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=20.0
Q ss_pred EEEEcHH-HHhhcCH------HHHHHHHHHHHhhhh
Q 026723 59 FVVVHTS-LVELLTR------KELQAVLAHELGHLK 87 (234)
Q Consensus 59 ~I~i~~~-ll~~l~~------~El~aVlaHElgHi~ 87 (234)
.|.++.. +++.+.+ +++.-|+-||+||.-
T Consensus 86 rItlYRrailDywae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 86 RITLYRRALLDYWAENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred eeeeeHHHHHHHHhhhhhhHhhHhhhhhhhhhhhhc
Confidence 5777765 4455533 457888999999964
No 102
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=48.42 E-value=11 Score=36.13 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhhhhcCc
Q 026723 71 TRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 71 ~~~El~aVlaHElgHi~~~h 90 (234)
.+.+...|+|||++|-..|+
T Consensus 275 ~d~s~~~viaHElAHqWfGN 294 (601)
T TIGR02411 275 GDRSNVDVIAHELAHSWSGN 294 (601)
T ss_pred CChhhhhhHHHHHHhhccCc
Confidence 34566789999999999885
No 103
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=47.71 E-value=13 Score=30.58 Aligned_cols=20 Identities=40% Similarity=0.297 Sum_probs=16.5
Q ss_pred hcCHHHHHHHHHHHHhhhhc
Q 026723 69 LLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 69 ~l~~~El~aVlaHElgHi~~ 88 (234)
.|+.--.-+|||||+.|...
T Consensus 87 GLPrll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 87 GLPRLLTGSILAHELMHAWL 106 (212)
T ss_pred CCCHHHHhhHHHHHHHHHHh
Confidence 46777789999999999765
No 104
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=45.86 E-value=13 Score=30.38 Aligned_cols=14 Identities=50% Similarity=0.662 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhh
Q 026723 74 ELQAVLAHELGHLK 87 (234)
Q Consensus 74 El~aVlaHElgHi~ 87 (234)
=+..|+-||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 35689999999986
No 105
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=45.72 E-value=41 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=21.4
Q ss_pred CEEEEcHHHHhhc--CHHHHHHHHHHHHhhh
Q 026723 58 PFVVVHTSLVELL--TRKELQAVLAHELGHL 86 (234)
Q Consensus 58 ~~I~i~~~ll~~l--~~~El~aVlaHElgHi 86 (234)
..|.|-......- ..+.-+++|.||+.|+
T Consensus 77 ~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 77 YTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred eEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 4799999988742 4467789999999994
No 106
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=44.83 E-value=12 Score=32.88 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhhhhc
Q 026723 71 TRKELQAVLAHELGHLKC 88 (234)
Q Consensus 71 ~~~El~aVlaHElgHi~~ 88 (234)
.+-.+=+.++||+||.+-
T Consensus 192 p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQLG 209 (318)
T ss_pred CcccccHHHHHHHHHHhC
Confidence 456788999999999864
No 107
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=44.42 E-value=15 Score=29.09 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q 026723 75 LQAVLAHELGHLK 87 (234)
Q Consensus 75 l~aVlaHElgHi~ 87 (234)
+-+|+.||+||..
T Consensus 8 ~i~i~iHE~gH~~ 20 (180)
T cd05709 8 LISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 3478999999987
No 108
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=43.85 E-value=1.1e+02 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=18.7
Q ss_pred EEEcHHHHhh-cCHHHH---HHHHHHHHhhhhcCc
Q 026723 60 VVVHTSLVEL-LTRKEL---QAVLAHELGHLKCDH 90 (234)
Q Consensus 60 I~i~~~ll~~-l~~~El---~aVlaHElgHi~~~h 90 (234)
|..+.+..+. ++.+.+ .--+.||+||..+.-
T Consensus 200 i~~~~~~~~~~l~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 200 IGFPPNWMNELLNPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp EEEETT--HHHH-HHHHHHH-HHHHHHHHHHH-BG
T ss_pred EEeeCcHHhcccCHhHcCCCCeeehhhhhhhcCcc
Confidence 5555444443 466666 678999999998865
No 109
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=43.02 E-value=49 Score=33.29 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhcCcHH
Q 026723 73 KELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 73 ~El~aVlaHElgHi~~~h~~ 92 (234)
+.++.|++||++|-..|+-.
T Consensus 305 ~~~~~viaHElaHqWfGnlV 324 (859)
T COG0308 305 ENVEEVIAHELAHQWFGNLV 324 (859)
T ss_pred HHHHHHHHHHHhhhccccee
Confidence 56777999999999998743
No 110
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=42.60 E-value=16 Score=30.44 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhh
Q 026723 75 LQAVLAHELGHLK 87 (234)
Q Consensus 75 l~aVlaHElgHi~ 87 (234)
+..|+-||+||..
T Consensus 53 ~~~v~iHElgH~~ 65 (227)
T cd06164 53 FASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 5688999999986
No 111
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=42.20 E-value=82 Score=24.62 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCCCc-----EEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAPD-----LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p~-----v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+.+.+|++.-+ .+-+ ....|+|..+..|.+.|+......++++.+..++.
T Consensus 92 ~~ll~~l~~~Lgi~~gett~Dg~ftL----~~~~ClG~C~~aP~~~in~~~~~~lt~~~~~~il~ 152 (156)
T PRK05988 92 DALAAHAKARLGIDFHQTTADGAVTL----EPVYCLGLCACSPAAMLDGEVHGRLDPQRLDALLA 152 (156)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEE----EeeeecCccCCCCeEEECCEEeCCCCHHHHHHHHH
Confidence 56788888888876432 1111 24457777778899999999999999999988875
No 112
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=41.53 E-value=15 Score=29.51 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhc
Q 026723 76 QAVLAHELGHLKC 88 (234)
Q Consensus 76 ~aVlaHElgHi~~ 88 (234)
..|+-||+||..-
T Consensus 10 ~~v~iHElGH~~~ 22 (182)
T cd06163 10 ILIFVHELGHFLV 22 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 3588999999864
No 113
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=39.31 E-value=78 Score=25.19 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCCCc-----EEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAPD-----LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p~-----v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+.+++|++.-+ .+-++ ...|+|..+..|.+.|+......++++.+..+|.
T Consensus 105 ~~ll~~l~~~Lgi~~gett~DG~ftL~----~~~ClG~C~~AP~~~Vn~~~~~~lt~e~v~~il~ 165 (169)
T PRK07571 105 AAILEDLENELGIKAGETTADGKLSLL----TARCLGACGIAPAVVFDGKVAGKQTPESVLEKVQ 165 (169)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE----EecccCccCCCCeEEECCEEeCCCCHHHHHHHHH
Confidence 56788888999986432 22222 3446777777899999999999999999998886
No 114
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=38.10 E-value=21 Score=29.06 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhhc
Q 026723 73 KELQAVLAHELGHLKC 88 (234)
Q Consensus 73 ~El~aVlaHElgHi~~ 88 (234)
-.+-.++.||+||..-
T Consensus 20 ~~~l~t~~HE~gHal~ 35 (200)
T PF13398_consen 20 FRLLVTFVHELGHALA 35 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566799999999864
No 115
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=38.08 E-value=7.6 Score=33.55 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhh
Q 026723 76 QAVLAHELGHLK 87 (234)
Q Consensus 76 ~aVlaHElgHi~ 87 (234)
-+|++||+||..
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 599999999954
No 116
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=37.17 E-value=22 Score=28.57 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhh
Q 026723 74 ELQAVLAHELGHLK 87 (234)
Q Consensus 74 El~aVlaHElgHi~ 87 (234)
=+..+..||+||..
T Consensus 40 l~~~l~iHElgH~~ 53 (183)
T cd06160 40 LLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 35678899999986
No 117
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.79 E-value=79 Score=26.98 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=20.7
Q ss_pred EEEEcHHHHhhcCHHHHHHHHHHHHhhhhcC
Q 026723 59 FVVVHTSLVELLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 59 ~I~i~~~ll~~l~~~El~aVlaHElgHi~~~ 89 (234)
+|++.-+ ...|..++.++||||.-|..+-
T Consensus 126 ki~l~l~--p~~~~~~v~aliaHE~HH~~R~ 154 (280)
T COG5504 126 KIMLWLV--PSSTITSVPALIAHEYHHNCRL 154 (280)
T ss_pred eEEEEEe--cCCCccchHHHHHHHHHhhhee
Confidence 4555432 2267889999999999987653
No 118
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=35.36 E-value=1.3e+02 Score=20.38 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCC------cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAP------DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p------~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+.+.++++.. .+.+. .+.++|..+..|.+.|.......++++.+..++.
T Consensus 18 ~~ll~~l~~~l~~~~g~~~~dg~~~l~-----~~~ClG~C~~gP~~~v~~~~~~~~~~e~i~~il~ 78 (80)
T cd03081 18 EALAAHIKARLGIDFHETTADGSVTLE-----PVYCLGLCACSPAAMIDGEVHGRVDPEKFDALLA 78 (80)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE-----EeeecCccCCCCEEEECCEEECCCCHHHHHHHHH
Confidence 3456666666665421 23332 4457777777889999988888899998887764
No 119
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=35.05 E-value=32 Score=27.35 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=25.0
Q ss_pred cccCCCCEEEEcHHHHhhcCHHHHHHHHHH
Q 026723 52 AISGKKPFVVVHTSLVELLTRKELQAVLAH 81 (234)
Q Consensus 52 g~~g~~~~I~i~~~ll~~l~~~El~aVlaH 81 (234)
|+.+..|.++|..|++-.|+++++..+|..
T Consensus 152 g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 152 GFDPDRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp TT-TTSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CCCCCCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 666788999999999999999999998864
No 120
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=34.33 E-value=24 Score=30.22 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhh
Q 026723 72 RKELQAVLAHELGHLK 87 (234)
Q Consensus 72 ~~El~aVlaHElgHi~ 87 (234)
......|+.||+||-.
T Consensus 213 ~~~~~~v~vHE~GHsf 228 (264)
T PF09471_consen 213 NPSFKQVVVHEFGHSF 228 (264)
T ss_dssp STTHHHHHHHHHHHHT
T ss_pred cccccceeeeeccccc
Confidence 3368899999999954
No 121
>PRK10911 oligopeptidase A; Provisional
Probab=34.17 E-value=29 Score=33.84 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHHHHhhhhcCc
Q 026723 70 LTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 70 l~~~El~aVlaHElgHi~~~h 90 (234)
|+-+|+. .|.||+||..|+-
T Consensus 459 L~~~~v~-tlfHEfGHalH~~ 478 (680)
T PRK10911 459 FTHDEVI-TLFHEFGHGLHHM 478 (680)
T ss_pred cCHHHHH-HHHHHHhHHHHHH
Confidence 3557776 6889999998743
No 122
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=33.95 E-value=26 Score=30.01 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhh
Q 026723 74 ELQAVLAHELGHLK 87 (234)
Q Consensus 74 El~aVlaHElgHi~ 87 (234)
=+-+|+.||+||..
T Consensus 117 L~isv~iHElgHa~ 130 (263)
T cd06159 117 LVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 35678999999986
No 123
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=33.65 E-value=10 Score=36.49 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=24.6
Q ss_pred CEEEEcHHHHhhc------CHHHHHHHHHHHHhhhh
Q 026723 58 PFVVVHTSLVELL------TRKELQAVLAHELGHLK 87 (234)
Q Consensus 58 ~~I~i~~~ll~~l------~~~El~aVlaHElgHi~ 87 (234)
....+++|+.... .+.|..-++|||+||--
T Consensus 369 ~~~sLNtGi~T~~NYg~~Vp~kvs~lt~AHEiGHNf 404 (764)
T KOG3658|consen 369 KKRSLNTGISTSVNYGKRVPTKVSDLTLAHEIGHNF 404 (764)
T ss_pred ceEEeecceeeeeecCCccCcchhheeehhhhcccc
Confidence 4678899988754 47899999999999965
No 124
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=33.26 E-value=23 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=16.8
Q ss_pred EEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCc
Q 026723 59 FVVVHTSLVELLTRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 59 ~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h 90 (234)
.|.|...--+. --+--|+||++|+-+-.
T Consensus 67 ~i~IDP~~~~K----GC~~TL~HEL~H~WQ~R 94 (141)
T PHA02456 67 WIEIDPDYANK----GCRDTLAHELNHAWQFR 94 (141)
T ss_pred EEEECCccccc----chHHHHHHHHHHHHhhh
Confidence 55555443332 33445799999987643
No 125
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=33.01 E-value=30 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHHhhhhcCcHH
Q 026723 70 LTRKELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 70 l~~~El~aVlaHElgHi~~~h~~ 92 (234)
.++.|-.++++|++||+..+|-.
T Consensus 127 ~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 127 LNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred cCchHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999998854
No 126
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=32.59 E-value=1.3e+02 Score=25.56 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=47.9
Q ss_pred eecCCCCchHHHHHHHHHHHHcCCCC-CcEEEecCCCCc-----E-EEecccCCCCEEEEcHHHHhhcCHHHHHHHHHH
Q 026723 10 VLVSKNQLPELHQLMTEAAEILNLEA-PDLYVRQSPVPN-----A-YTLAISGKKPFVVVHTSLVELLTRKELQAVLAH 81 (234)
Q Consensus 10 ~~v~~~~~p~l~~~v~~l~~~~~~~~-p~v~v~~~~~~n-----A-~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaH 81 (234)
.++=+-+.|++.+.=+++.++.+... .....+..+ .+ + -..|+.+.+|.++|..|++-.|+++++..++..
T Consensus 105 ~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~D-l~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~ 182 (260)
T TIGR00027 105 TRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVD-LRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAF 182 (260)
T ss_pred CeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccC-chhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHH
Confidence 45556688888877777777777653 333333221 11 1 123666678999999999999999998887753
No 127
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=32.43 E-value=22 Score=28.64 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCCCchHHHHHHHHHHHHcCCC-CC----cEEE--ecCCCCcEEE-ecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHh
Q 026723 13 SKNQLPELHQLMTEAAEILNLE-AP----DLYV--RQSPVPNAYT-LAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 84 (234)
Q Consensus 13 ~~~~~p~l~~~v~~l~~~~~~~-~p----~v~v--~~~~~~nA~~-~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElg 84 (234)
++.+...|.+.+++..+..-++ .| .-|| .... ..++ +|..|++..|-+.. ..+ ...+++.||++
T Consensus 15 ~~~~~~~I~~A~~~~~~~TCirF~~~~~~~~yi~~~~~~--gC~S~vG~~gg~q~i~l~~---~~C---~~~G~i~HEl~ 86 (182)
T cd04283 15 SENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRS--GCWSYIGRQGGRQTVSLQK---QGC---MYKGIIQHELL 86 (182)
T ss_pred CHHHHHHHHHHHHHHHhCCceeeEECCCCCcEEEEEcCC--CceEecCccCCceeEecCC---CCc---CccchHHHHHH
Confidence 3444556777777776654433 11 2233 2222 2222 35444433444431 112 12589999999
Q ss_pred hhhc
Q 026723 85 HLKC 88 (234)
Q Consensus 85 Hi~~ 88 (234)
|..-
T Consensus 87 HaLG 90 (182)
T cd04283 87 HALG 90 (182)
T ss_pred HHhC
Confidence 9873
No 128
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=32.22 E-value=1.7e+02 Score=23.43 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhh-cCc
Q 026723 74 ELQAVLAHELGHLK-CDH 90 (234)
Q Consensus 74 El~aVlaHElgHi~-~~h 90 (234)
-+.-...||+||.. ..|
T Consensus 124 R~~k~~~HElGH~lGL~H 141 (179)
T PRK13267 124 RVRKEVTHELGHTLGLEH 141 (179)
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 34555899999994 344
No 129
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=31.76 E-value=1.6e+02 Score=19.91 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=25.6
Q ss_pred EEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHH
Q 026723 48 AYTLAISGKKPFVVVHTSLVELLTRKELQAVLAH 81 (234)
Q Consensus 48 A~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaH 81 (234)
..++|.....|.+.|..-+...++++.+..++.+
T Consensus 46 ~gClG~C~~~P~v~V~~~~y~~v~~~~v~~iv~~ 79 (80)
T cd03083 46 TSCTGLCDQGPALLINNRVFTRLTPGRIDQIAEL 79 (80)
T ss_pred eceecCcCCCCeEEECCEEECCCCHHHHHHHHhc
Confidence 3466766677899998777777899888877753
No 130
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=31.76 E-value=42 Score=31.64 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=18.8
Q ss_pred EEEEcHHHHhhcCHHHHHHHHHHHHhhhhcCcH
Q 026723 59 FVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 59 ~I~i~~~ll~~l~~~El~aVlaHElgHi~~~h~ 91 (234)
.|-|....+.....+...-++.||++|+.--..
T Consensus 194 ~in~~p~~i~~~~~~~~~~~~~HEi~HaLGFs~ 226 (521)
T PF01457_consen 194 VININPSYIPSFYFQEFFRTVIHEIAHALGFSS 226 (521)
T ss_dssp EEE--GGG---S--HHHHHHHHHHHHHHTT-SH
T ss_pred EEEEchhHccchhhhcccceeeeeeeeeeeecc
Confidence 344555555444567888899999999986544
No 131
>PRK11767 SpoVR family protein; Provisional
Probab=31.63 E-value=63 Score=30.28 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHcCCC-CC-cEEEecCC-CCcEEE-------------------------ecccCCCCEEEEcH-HHHh
Q 026723 18 PELHQLMTEAAEILNLE-AP-DLYVRQSP-VPNAYT-------------------------LAISGKKPFVVVHT-SLVE 68 (234)
Q Consensus 18 p~l~~~v~~l~~~~~~~-~p-~v~v~~~~-~~nA~~-------------------------~g~~g~~~~I~i~~-~ll~ 68 (234)
.+..+.+.++|+.+|+. -| .+-|++.. ...+++ .|..|---=|||++ +.+.
T Consensus 18 ~~~~~~I~~iA~~~GLD~yp~~~EIi~~eqml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnPciA 97 (498)
T PRK11767 18 QRYLDEIERVAKEYGLDTYPNQIEVITAEQMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNPCIA 97 (498)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEECHHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCchHHH
Confidence 34567788888999998 34 44466533 344433 23322111256654 3333
Q ss_pred ----hcCHHHHHHHHHH-HHhhhh
Q 026723 69 ----LLTRKELQAVLAH-ELGHLK 87 (234)
Q Consensus 69 ----~l~~~El~aVlaH-ElgHi~ 87 (234)
.-+.-.-..|+|| ++||.-
T Consensus 98 yLme~Ntl~~q~LViAHv~yGHnd 121 (498)
T PRK11767 98 YLMEENTMTMQALVIAHACYGHNS 121 (498)
T ss_pred HHhccCcHHHHHHHHHHHHHhhhh
Confidence 3355678899999 699964
No 132
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=31.47 E-value=30 Score=29.87 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhc
Q 026723 75 LQAVLAHELGHLKC 88 (234)
Q Consensus 75 l~aVlaHElgHi~~ 88 (234)
+-+|+.||+||...
T Consensus 135 ~isvvvHElgHal~ 148 (277)
T cd06162 135 LISGVVHEMGHGVA 148 (277)
T ss_pred HHHHHHHHHHHHHH
Confidence 67899999999864
No 133
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=31.44 E-value=23 Score=28.95 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhhcC
Q 026723 76 QAVLAHELGHLKCD 89 (234)
Q Consensus 76 ~aVlaHElgHi~~~ 89 (234)
.+++.|||+|..--
T Consensus 88 ~Gti~HEl~HaLGf 101 (200)
T cd04281 88 FGIVVHELGHVIGF 101 (200)
T ss_pred CchHHHHHHHHhcC
Confidence 48999999998743
No 134
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=31.21 E-value=1.8e+02 Score=26.08 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCC-C--CcEEEec-----CCCCcEEEecccCCCCEEEEcHHHHhh-------cCHHHHHHHHHHHH
Q 026723 19 ELHQLMTEAAEILNLE-A--PDLYVRQ-----SPVPNAYTLAISGKKPFVVVHTSLVEL-------LTRKELQAVLAHEL 83 (234)
Q Consensus 19 ~l~~~v~~l~~~~~~~-~--p~v~v~~-----~~~~nA~~~g~~g~~~~I~i~~~ll~~-------l~~~El~aVlaHEl 83 (234)
.+...++.+++.++-. - ..+|--+ ++..-||+. +. ...|+.=...+.. +.......++-||+
T Consensus 229 ~Va~~f~aIA~Ec~s~~~g~~t~~C~D~~~~C~~~vlAYT~--p~-~~~I~~Cp~ff~~lp~~~~~C~~qDqatt~LHE~ 305 (359)
T PF02102_consen 229 TVASRFNAIASECSSTSSGSTTYYCTDPYGYCSSGVLAYTL--PS-QNQIVNCPIFFSDLPALSNRCHAQDQATTTLHEM 305 (359)
T ss_dssp HHHHHHHHHHHHHT-SB-SS-EEESS-SSS---TT--EEEE--GG-GTEEEE-HHHHHH--SS--STT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCceEEEEECCCCccCCCeEEEEE--cC-CCeEEECchhhccCCCccccccCCCccchhhhhh
Confidence 4667778888877643 2 2233222 123445555 33 3466665555543 34567889999999
Q ss_pred hhhhc
Q 026723 84 GHLKC 88 (234)
Q Consensus 84 gHi~~ 88 (234)
.|...
T Consensus 306 TH~~~ 310 (359)
T PF02102_consen 306 THAPA 310 (359)
T ss_dssp HT-TT
T ss_pred hcccc
Confidence 99974
No 135
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=30.81 E-value=94 Score=29.20 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcC
Q 026723 21 HQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~ 89 (234)
.+.-..+++.+|+....-.+-. ..-.|+.|+++ ..|-|++..-+.--..-| +=..||.||..-.
T Consensus 210 ~~~~~~~~~~~G~d~~~grld~--s~HPFt~~~~~--~DvRiTTry~e~d~~~~l-~s~iHE~GHalYE 273 (494)
T PF02074_consen 210 KAFSRELLEYLGFDFDRGRLDE--SAHPFTTGFGP--NDVRITTRYDEDDFLSAL-FSTIHETGHALYE 273 (494)
T ss_dssp HHHHHHHHHHHT--GCGEEEEE---SS-EEEEEET--TEEEEEE--BTTBTHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceEEec--CCCCCCCCCCC--CceeeecccccccHHHHH-HHHHHHHHHHHHH
Confidence 4455678888999877766633 44556666533 368888875543222333 3345999998744
No 136
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=30.57 E-value=65 Score=25.66 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=29.4
Q ss_pred cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHH
Q 026723 37 DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQA 77 (234)
Q Consensus 37 ~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~a 77 (234)
.-.|++++.+||=..|+ . -+|+..+++.|.++|-..
T Consensus 41 QC~iyDs~~~~ArLIGv--E---YiISe~lf~tLP~eEkkl 76 (171)
T PF06884_consen 41 QCLIYDSNEPNARLIGV--E---YIISEKLFETLPEEEKKL 76 (171)
T ss_pred EEEEecCCCCCcceeee--e---EEEcHHHHhhCCHHHHhc
Confidence 34568899999999987 2 479999999999998653
No 137
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=28.86 E-value=42 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=22.6
Q ss_pred EEEEcHHHHhhc---CHHHHHHHHHHHHhhhhcC
Q 026723 59 FVVVHTSLVELL---TRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 59 ~I~i~~~ll~~l---~~~El~aVlaHElgHi~~~ 89 (234)
.++|....+..- +.+...+.||||+=|+.+-
T Consensus 120 ~~YiD~~~~~~~~~~~~~~~~sTlAHEfQHmInf 153 (366)
T PF10460_consen 120 YFYIDSETLYLGGNSGPDTVYSTLAHEFQHMINF 153 (366)
T ss_pred EEEEecHHhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 556666655322 3678999999999999853
No 138
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=25 Score=32.04 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhc
Q 026723 76 QAVLAHELGHLKC 88 (234)
Q Consensus 76 ~aVlaHElgHi~~ 88 (234)
.++++|||+|..-
T Consensus 160 ~G~i~HEl~HaLG 172 (411)
T KOG3714|consen 160 FGTIVHELMHALG 172 (411)
T ss_pred CchhHHHHHHHhh
Confidence 8999999999873
No 139
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=27.84 E-value=41 Score=28.76 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhh
Q 026723 72 RKELQAVLAHELGH 85 (234)
Q Consensus 72 ~~El~aVlaHElgH 85 (234)
+-++..||||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 45799999999999
No 140
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=36 Score=33.43 Aligned_cols=16 Identities=50% Similarity=0.594 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 026723 72 RKELQAVLAHELGHLK 87 (234)
Q Consensus 72 ~~El~aVlaHElgHi~ 87 (234)
....+.|+||||||..
T Consensus 320 ~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNL 335 (716)
T ss_pred chhHHHHHHHHHHhhc
Confidence 5678999999999986
No 141
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=26.76 E-value=1.4e+02 Score=27.15 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=48.2
Q ss_pred eecCCCCchH---HHHHHHHHHHHcCCCCCcEEEecCC---CCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHH
Q 026723 10 VLVSKNQLPE---LHQLMTEAAEILNLEAPDLYVRQSP---VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAH 81 (234)
Q Consensus 10 ~~v~~~~~p~---l~~~v~~l~~~~~~~~p~v~v~~~~---~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaH 81 (234)
++|.-...-. =.++++.|++++|+..-+ ...+. -....|+|.++.-|.+.|+..+...|+++.+.-+|..
T Consensus 93 I~VC~~t~C~l~Ga~~ll~~le~~Lgik~Ge--TT~DG~FTLe~veCLGaC~~APv~~Ind~~y~~LTpe~v~~IL~~ 168 (400)
T PRK12373 93 IQVCGTTPCMLRGSEALMAVCKSKIHAHPHE--LNADGTLSWEEVECLGACVNAPMVQIGKDYYEDLTPERLEEIIDA 168 (400)
T ss_pred EEEcCChHHHhCChHHHHHHHHHHhCCCCCC--cCCCCeEEEEeeeecCccCCCCeEEECCEEeCCCCHHHHHHHHHH
Confidence 5555543332 356788889999987432 11111 1134477887888999999999999999999988863
No 142
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.55 E-value=1.8e+02 Score=25.26 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=50.6
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCCC-cEEEecCCC-----CcE-EEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHh
Q 026723 12 VSKNQLPELHQLMTEAAEILNLEAP-DLYVRQSPV-----PNA-YTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 84 (234)
Q Consensus 12 v~~~~~p~l~~~v~~l~~~~~~~~p-~v~v~~~~~-----~nA-~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElg 84 (234)
+=+-+.|++.+.=.++....+..+| ++..+..+- .-+ -..|+...+|..+|-.||+..|+++++..++..=-.
T Consensus 118 vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~ 197 (297)
T COG3315 118 VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAA 197 (297)
T ss_pred EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHH
Confidence 3344688888777777777776655 444332111 111 125777788999999999999999998887765444
Q ss_pred hh
Q 026723 85 HL 86 (234)
Q Consensus 85 Hi 86 (234)
|.
T Consensus 198 ~~ 199 (297)
T COG3315 198 LS 199 (297)
T ss_pred hC
Confidence 44
No 143
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=26.43 E-value=43 Score=26.82 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q 026723 75 LQAVLAHELGHLK 87 (234)
Q Consensus 75 l~aVlaHElgHi~ 87 (234)
+-++..||+||..
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999986
No 144
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=25.81 E-value=1.3e+02 Score=20.29 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEe
Q 026723 16 QLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTL 51 (234)
Q Consensus 16 ~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~ 51 (234)
..+..+...-.+++.+|++.|+..++......+|++
T Consensus 41 ~~~~nE~~~~~lA~~~Gi~v~~~~l~~~~~~~~l~v 76 (81)
T PF07805_consen 41 DLVENEYACMRLARAAGIPVPETRLIRFGDRPALAV 76 (81)
T ss_dssp THHHHHHHHHHHHHHTT-----EEEEEETTEEEEEE
T ss_pred chHHHHHHHHHHHHHcCCCcCceEEEEECCeEEEEE
Confidence 456677788889999999999888877666566654
No 145
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=25.07 E-value=11 Score=31.46 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=19.9
Q ss_pred EEEcHHHHhhcC--HHHHHHHHHHHHhhhh-cCcH
Q 026723 60 VVVHTSLVELLT--RKELQAVLAHELGHLK-CDHG 91 (234)
Q Consensus 60 I~i~~~ll~~l~--~~El~aVlaHElgHi~-~~h~ 91 (234)
|+|....+-.-+ +-.+.-++.||+||+. ..|+
T Consensus 120 vvi~~~~~~~~~~~~~n~g~t~~HEvGH~lGL~Ht 154 (225)
T cd04275 120 VVINPSSLPGGSAAPYNLGDTATHEVGHWLGLYHT 154 (225)
T ss_pred EEEeccccCCCCcccccccceeEEeccceeeeeee
Confidence 555555443322 2356679999999987 3454
No 146
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=24.93 E-value=31 Score=31.90 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHHHHhhhhcC
Q 026723 70 LTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 70 l~~~El~aVlaHElgHi~~~ 89 (234)
|+-+|+. .|.||+||..|.
T Consensus 244 L~~~~v~-TLfHEfGHalH~ 262 (458)
T cd06457 244 LSPHEVE-TLFHEMGHAMHS 262 (458)
T ss_pred cCHHHHH-HHHHHHhHHHHH
Confidence 5677776 589999999883
No 147
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=24.38 E-value=42 Score=29.38 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhh-cCc
Q 026723 74 ELQAVLAHELGHLK-CDH 90 (234)
Q Consensus 74 El~aVlaHElgHi~-~~h 90 (234)
....+++||+||-. .+|
T Consensus 192 s~~~~f~HE~GH~~GL~H 209 (305)
T PF10462_consen 192 SYGNEFSHELGHNFGLGH 209 (305)
T ss_dssp -SHHHHHHHHHHTTT--S
T ss_pred CccceeehhhhhhcCCCC
Confidence 46789999999976 455
No 148
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=23.15 E-value=40 Score=28.28 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhc
Q 026723 76 QAVLAHELGHLKC 88 (234)
Q Consensus 76 ~aVlaHElgHi~~ 88 (234)
.+++.|||+|..-
T Consensus 121 ~Gti~HEl~HalG 133 (230)
T cd04282 121 KATVEHEFLHALG 133 (230)
T ss_pred CchHHHHHHHHhC
Confidence 4899999999874
No 149
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=23.13 E-value=40 Score=28.88 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhhhhcCc
Q 026723 71 TRKELQAVLAHELGHLKCDH 90 (234)
Q Consensus 71 ~~~El~aVlaHElgHi~~~h 90 (234)
+..---+.++||+||+..+-
T Consensus 199 da~~yyaTl~HElghwtgh~ 218 (316)
T COG4227 199 DAINYYATLLHELGHWTGHE 218 (316)
T ss_pred chHhHHHHHHHHhccccCch
Confidence 55678899999999997643
No 150
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=22.99 E-value=2.3e+02 Score=21.85 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCC------cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAP------DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p------~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+.+.++++.. .+.+. ...|+|..+..|.+.|+......++++.+..++.
T Consensus 91 ~~l~~~l~~~L~i~~g~tt~dg~~~l~-----~~~ClG~C~~gPvv~V~~~~y~~vt~e~v~~il~ 151 (154)
T PRK07539 91 EAILAALKKKLGIKPGETTADGRFTLL-----EVECLGACDNAPVVMINDDTYEDLTPEKIDELLD 151 (154)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE-----EccccCccCCCCEEEECCEEeCCCCHHHHHHHHH
Confidence 3456666666665422 12222 2346676667889999988888889998888774
No 151
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=22.80 E-value=36 Score=31.71 Aligned_cols=14 Identities=50% Similarity=0.695 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhh
Q 026723 74 ELQAVLAHELGHLK 87 (234)
Q Consensus 74 El~aVlaHElgHi~ 87 (234)
.|..|.+||+||..
T Consensus 210 ~l~~Va~HEiGH~L 223 (469)
T KOG1565|consen 210 DLFLVAAHEIGHAL 223 (469)
T ss_pred hhHHHhhhhccccc
Confidence 58899999999987
No 152
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=22.28 E-value=1.8e+02 Score=27.22 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhcC
Q 026723 22 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 89 (234)
Q Consensus 22 ~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~~ 89 (234)
+.-..+.+.+|++..+=.+ +..+-.||.|++++ -|-||+.- +.-+...-.+=+-||.||..-.
T Consensus 211 ~~~~~vl~~lGfdf~~GRl--D~S~HPF~~g~~~~--DVRITTRy-~~~df~~aL~g~iHE~GHAlYE 273 (497)
T COG2317 211 ALGLRVLELLGFDFERGRL--DVSVHPFTTGLPIN--DVRITTRY-NEQDFRSALFGTIHETGHALYE 273 (497)
T ss_pred HHHHHHHHHhCCCccCccc--cCCCCCccCCCCCC--ceeEEeec-CCccHHHHHHHHHHhhhhHHHH
Confidence 3445566777777543333 45667899998643 57777762 2334444445556999998754
No 153
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.92 E-value=2.1e+02 Score=25.55 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCcEEE-ecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHHHHHhhhhc
Q 026723 16 QLPELHQLMTEAAEILNLEAPDLYV-RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 88 (234)
Q Consensus 16 ~~p~l~~~v~~l~~~~~~~~p~v~v-~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVlaHElgHi~~ 88 (234)
+.+.+-+.++++..+.|++...+.. +++ ++... +.|-++ +.|+++||+.-+-||.+|+.-
T Consensus 56 d~~av~~~Lk~ala~~gi~~k~aa~AVP~---s~ait------k~i~vp----~~lde~eL~~~V~~ea~~y~P 116 (354)
T COG4972 56 DYDAVASALKRALAKLGIKSKNAATAVPG---SAAIT------KTIPVP----DELDEKELEDQVESEASRYIP 116 (354)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCc---cceee------EEeccC----CcccHHHHHHHHHHHHhhcCC
Confidence 4568888999999999987664433 111 11111 123333 348999999999999999875
No 154
>PLN02709 nudix hydrolase
Probab=21.13 E-value=1.2e+02 Score=25.30 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=43.9
Q ss_pred ecCCCCchHHHHHHHHHHHHcCCCCCcEEEecCCCCcEEEecccCCCCEEEEcH---HHHhhcCHHHHHHHHHHHHhhhh
Q 026723 11 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHT---SLVELLTRKELQAVLAHELGHLK 87 (234)
Q Consensus 11 ~v~~~~~p~l~~~v~~l~~~~~~~~p~v~v~~~~~~nA~~~g~~g~~~~I~i~~---~ll~~l~~~El~aVlaHElgHi~ 87 (234)
++.+++...+...++++.+..|++...+.++..-..-.-..|+. -.|+|.+-. ..--..+++|++.|+-==|.++.
T Consensus 75 ~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~-V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll 153 (222)
T PLN02709 75 KRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMS-VAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFL 153 (222)
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCE-EEEEEEEecCCCCccccCChhhhheeEEecHHHHh
Confidence 45565555679999999999999877777764211100011110 134454332 11113588898877665555555
Q ss_pred c
Q 026723 88 C 88 (234)
Q Consensus 88 ~ 88 (234)
.
T Consensus 154 ~ 154 (222)
T PLN02709 154 K 154 (222)
T ss_pred C
Confidence 4
No 155
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=21.04 E-value=28 Score=32.34 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=10.7
Q ss_pred HHHHHHhhhhcCc
Q 026723 78 VLAHELGHLKCDH 90 (234)
Q Consensus 78 VlaHElgHi~~~h 90 (234)
|+||||+|-...-
T Consensus 340 VvAHElTHGvtq~ 352 (507)
T COG3227 340 VVAHELTHGVTQQ 352 (507)
T ss_pred eehhhhcchhhhh
Confidence 8999999976554
No 156
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=20.76 E-value=1e+02 Score=18.01 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=11.7
Q ss_pred HHHhhcCHHHHHHHHH
Q 026723 65 SLVELLTRKELQAVLA 80 (234)
Q Consensus 65 ~ll~~l~~~El~aVla 80 (234)
.+++.||.++|..||-
T Consensus 5 RlLE~Ld~~qL~~lL~ 20 (38)
T PF14483_consen 5 RLLETLDKDQLQSLLQ 20 (38)
T ss_dssp HHHTTS-HHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHH
Confidence 5788888888888763
No 157
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=20.39 E-value=37 Score=25.53 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhcCcH
Q 026723 74 ELQAVLAHELGHLKCDHG 91 (234)
Q Consensus 74 El~aVlaHElgHi~~~h~ 91 (234)
++..+++||.-|.-+..-
T Consensus 3 ~~l~l~sHEffH~Wnvkr 20 (122)
T PF05299_consen 3 RFLGLLSHEFFHSWNVKR 20 (122)
T ss_pred chhhhhhhhccccccceE
Confidence 467899999999987653
No 158
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=20.39 E-value=50 Score=30.13 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhc
Q 026723 76 QAVLAHELGHLKC 88 (234)
Q Consensus 76 ~aVlaHElgHi~~ 88 (234)
..|+-||+||+..
T Consensus 15 ~~v~~HE~gH~~~ 27 (420)
T TIGR00054 15 VLIFVHELGHFLA 27 (420)
T ss_pred HHHHHHhHHHHHH
Confidence 3578899999863
No 159
>PF10964 DUF2766: Protein of unknown function (DUF2766); InterPro: IPR020262 This entry contains proteins with no known function.
Probab=20.37 E-value=1.5e+02 Score=19.90 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 026723 126 LRAAELTCDRAALLVSQDPKVVISVLMKLA 155 (234)
Q Consensus 126 sR~~E~~AD~~a~~~~~~~~~~~~aL~kl~ 155 (234)
.-..|...|..|.+++- ......+..++
T Consensus 6 t~~~ELvSDlVACQLVI--KQILDVidvIA 33 (79)
T PF10964_consen 6 TEDQELVSDLVACQLVI--KQILDVIDVIA 33 (79)
T ss_pred cchHHHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 34579999999998863 34444444443
No 160
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=20.32 E-value=2.9e+02 Score=21.10 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCC------cEEEecCCCCcEEEecccCCCCEEEEcHHHHhhcCHHHHHHHHH
Q 026723 21 HQLMTEAAEILNLEAP------DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 80 (234)
Q Consensus 21 ~~~v~~l~~~~~~~~p------~v~v~~~~~~nA~~~g~~g~~~~I~i~~~ll~~l~~~El~aVla 80 (234)
.+.++.+.+.+|++.- .+.+. ...|+|..+..|.+.|+......++++.+.-++.
T Consensus 85 ~~v~~~l~~~L~i~~g~~t~dg~~~l~-----~~~ClG~C~~aP~v~V~~~~y~~vt~e~v~~il~ 145 (148)
T TIGR01958 85 EALLKYLENKLGIKPGETTPDGRFTLV-----EVECLGACGNAPVMMINDDYYEFLTPEKLDELLE 145 (148)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEE-----EcCccCccCCCCEEEECCEEeCCCCHHHHHHHHH
Confidence 4566667777776532 12222 2336666667789999988888899999888875
No 161
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=20.06 E-value=87 Score=25.63 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHHHhhhhcCcHH
Q 026723 70 LTRKELQAVLAHELGHLKCDHGV 92 (234)
Q Consensus 70 l~~~El~aVlaHElgHi~~~h~~ 92 (234)
+++++..-+.-||.||..-.+..
T Consensus 23 ~~~~~~~~~A~HEAGhAvva~~l 45 (213)
T PF01434_consen 23 LSEEEKRRIAYHEAGHAVVAYLL 45 (213)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999876643
No 162
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=20.03 E-value=53 Score=26.94 Aligned_cols=31 Identities=26% Similarity=0.137 Sum_probs=20.5
Q ss_pred CEEEEcHHHHhhc------C-HHHHHHHHHHHHhhhhc
Q 026723 58 PFVVVHTSLVELL------T-RKELQAVLAHELGHLKC 88 (234)
Q Consensus 58 ~~I~i~~~ll~~l------~-~~El~aVlaHElgHi~~ 88 (234)
..|+|+..=...- + ..=-+.||=||.||..-
T Consensus 115 ~~VvIN~~RWv~Ga~~f~gdl~~YRqYvINHEVGH~LG 152 (203)
T PF11350_consen 115 GRVVINLARWVRGAPAFGGDLASYRQYVINHEVGHALG 152 (203)
T ss_pred CeEEEehHHhhccCcccCCcHHHHHHHhhhhhhhhhcc
Confidence 4678876544332 1 13467899999999883
Done!