Your job contains 1 sequence.
>026724
MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG
GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR
YFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAG
PSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY
The BLAST search returned 13 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026724
(234 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 693 2.0e-77 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 173 4.7e-18 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 174 5.0e-18 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 174 5.1e-18 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 178 2.5e-17 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 170 6.0e-17 2
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 167 8.4e-17 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 156 9.8e-17 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 163 1.6e-16 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 159 1.0e-15 3
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 160 2.0e-15 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 165 4.0e-15 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 163 4.4e-15 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 144 5.5e-15 3
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 161 9.3e-15 3
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 153 1.5e-14 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 153 1.9e-14 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 163 5.8e-14 2
FB|FBgn0025790 - symbol:TBPH "TAR DNA-binding protein-43 ... 172 6.1e-14 2
UNIPROTKB|F1LW17 - symbol:F1LW17 "Uncharacterized protein... 149 8.3e-14 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 154 8.9e-14 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 154 9.7e-14 2
UNIPROTKB|F1LUE7 - symbol:F1LUE7 "Uncharacterized protein... 149 1.1e-13 2
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 149 2.9e-13 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 144 3.1e-13 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 152 3.2e-13 2
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 156 3.7e-13 2
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 152 6.6e-13 2
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 138 7.9e-13 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 141 7.9e-13 2
GENEDB_PFALCIPARUM|PF11_0083 - symbol:PF11_0083 "nucleic ... 179 8.2e-13 1
UNIPROTKB|Q8IIT2 - symbol:PF11_0083 "Nucleic acid binding... 179 8.2e-13 1
UNIPROTKB|F8VYN5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 100 8.3e-13 2
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 152 8.3e-13 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 145 8.4e-13 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 166 9.1e-13 2
UNIPROTKB|B4DJ45 - symbol:TARDBP "cDNA FLJ58188, highly s... 164 9.2e-13 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 152 9.6e-13 2
UNIPROTKB|I3L7S7 - symbol:LOC100621383 "Uncharacterized p... 163 1.1e-12 2
UNIPROTKB|Q2KJ45 - symbol:TARDBP "Uncharacterized protein... 164 1.2e-12 2
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 151 1.2e-12 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 138 1.2e-12 2
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 152 1.3e-12 2
UNIPROTKB|E2QS43 - symbol:TARDBP "Uncharacterized protein... 167 1.4e-12 2
UNIPROTKB|G3MX91 - symbol:TARDBP "Uncharacterized protein... 167 1.4e-12 2
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 138 1.4e-12 2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 127 1.5e-12 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 141 1.6e-12 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 141 1.7e-12 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 141 1.7e-12 2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 141 1.7e-12 2
UNIPROTKB|E2RBV8 - symbol:HNRNPA0 "Uncharacterized protei... 141 1.8e-12 2
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 144 1.8e-12 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 151 1.9e-12 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 151 1.9e-12 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 151 1.9e-12 2
UNIPROTKB|F1M6S2 - symbol:F1M6S2 "Uncharacterized protein... 145 2.0e-12 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 140 2.3e-12 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 150 2.7e-12 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 136 3.4e-12 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 151 3.6e-12 3
UNIPROTKB|F1RH94 - symbol:HNRNPA0 "Uncharacterized protei... 139 3.7e-12 2
UNIPROTKB|G3V162 - symbol:TARDBP "TAR DNA-binding protein... 161 3.8e-12 2
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 138 4.2e-12 2
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 138 4.6e-12 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 140 5.2e-12 2
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 138 5.4e-12 2
ZFIN|ZDB-GENE-030131-3777 - symbol:tardbp "TAR DNA bindin... 164 5.6e-12 2
UNIPROTKB|Q13148 - symbol:TARDBP "TAR DNA-binding protein... 164 5.7e-12 2
MGI|MGI:2387629 - symbol:Tardbp "TAR DNA binding protein"... 164 5.7e-12 2
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 137 6.0e-12 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 136 6.3e-12 2
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 148 7.8e-12 2
UNIPROTKB|F1M3H8 - symbol:F1M3H8 "Uncharacterized protein... 125 8.1e-12 2
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 130 8.9e-12 2
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 144 9.7e-12 2
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 126 1.3e-11 2
UNIPROTKB|I3LNA4 - symbol:LOC100621383 "Uncharacterized p... 163 1.3e-11 2
UNIPROTKB|F1NBY1 - symbol:TARDBP "TAR DNA-binding protein... 163 1.3e-11 2
UNIPROTKB|Q5ZLN5 - symbol:TARDBP "TAR DNA-binding protein... 163 1.3e-11 2
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p... 132 1.4e-11 3
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p... 132 1.4e-11 3
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 154 1.5e-11 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 154 1.5e-11 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 154 1.5e-11 2
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 144 1.9e-11 2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 126 2.0e-11 2
UNIPROTKB|F1LZZ2 - symbol:F1LZZ2 "Uncharacterized protein... 140 2.6e-11 2
UNIPROTKB|F1M6C7 - symbol:F1M6C7 "Uncharacterized protein... 126 3.2e-11 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 138 3.2e-11 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 151 3.8e-11 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 141 3.8e-11 2
FB|FBgn0036496 - symbol:CG7804 species:7227 "Drosophila m... 166 4.2e-11 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 151 4.2e-11 2
UNIPROTKB|F1PGQ0 - symbol:F1PGQ0 "Uncharacterized protein... 129 4.2e-11 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 151 4.3e-11 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 151 4.3e-11 2
RGD|1310906 - symbol:Tardbp "TAR DNA binding protein" spe... 154 5.1e-11 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 149 5.1e-11 2
UNIPROTKB|F1NCI5 - symbol:HNRNPA0 "Uncharacterized protei... 136 6.0e-11 2
WARNING: Descriptions of 447 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 693 (249.0 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 133/183 (72%), Positives = 152/183 (83%)
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR-IGKKIFVGRLPQEATAEDL 118
GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R IG KIFVGRLPQEA+ +DL
Sbjct: 197 GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDL 256
Query: 119 RRYFSRFGRILDVYVPK---RTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 175
R YF RFG I D Y+PK R+GHRGFGFVTFAE VADRV+RRSHEICGQ+VAIDSATP
Sbjct: 257 RDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATP 316
Query: 176 LDDAGPSQ--NFMMNAA--ETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
LD+AGPS + M++++ E FGGYGGPMR +GRMYG + DDWGYGM + RPSR D RY
Sbjct: 317 LDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWGYGMPNARPSRPDRRY 376
Query: 232 RPY 234
RPY
Sbjct: 377 RPY 379
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 79/115 (68%), Positives = 87/115 (75%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP----VGR 56
MPKD SK HRGIGFITF+SADSVE+LM DTH+LGG+TV VDRATPKEDD P V R
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181
Query: 57 MSH------------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 99
MS GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTR 236
Score = 170 (64.9 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 36/105 (34%), Positives = 54/105 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG---HRGFGFVTFAEEVVADRVSRR 159
+IFV R+P + D R +F R+G I D+Y+PK HRG GF+TF+ + +
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 160 SHEICGQQVAIDSATPLDDAGPSQ-----NFMMNAAETFGGYGGP 199
+H++ G VA+D ATP +D P + GG+G P
Sbjct: 152 THDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAP 196
Score = 105 (42.0 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
KD+ + RG G++TFASA+ +N + H LG + V ATPKE+ +P +++
Sbjct: 36 KDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVT 91
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 173 (66.0 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 49/142 (34%), Positives = 66/142 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 158 RRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 212
++ H + G + I A P + G N G GG +++ + YG+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSG-GGQSQSWNQGYGNYWN 272
Query: 213 DDWGYGMGSGRPSRGDWRYRPY 234
+GY G G P G + Y PY
Sbjct: 273 QGYGYQQGYG-PGYGGYDYSPY 293
Score = 115 (45.5 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 68 (29.0 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
Score = 62 (26.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 180 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 231
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 258 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 311
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 174 (66.3 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 49/142 (34%), Positives = 69/142 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYV-PKRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF +FG I +++ + PK RGF F+TF EE +V
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 158 RRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 212
++ H + G + I A P + G N G GG +++ + YG+
Sbjct: 218 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSG-GGQSQSWNQGYGNYWN 276
Query: 213 DDWGYGMGSGRPSRGDWRYRPY 234
+GY G G P G + Y PY
Sbjct: 277 QGYGYQQGYG-PGYGGYDYSPY 297
Score = 114 (45.2 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 135 KEHRLDGRVI 144
Score = 67 (28.6 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 164
Score = 62 (26.9 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 180 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 231
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 262 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 315
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 174 (66.3 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 49/142 (34%), Positives = 69/142 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYV-PKRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF +FG I +++ + PK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 158 RRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 212
++ H + G + I A P + G N G GG +++ + YG+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSG-GGQSQSWNQGYGNYWN 277
Query: 213 DDWGYGMGSGRPSRGDWRYRPY 234
+GY G G P G + Y PY
Sbjct: 278 QGYGYQQGYG-PGYGGYDYSPY 298
Score = 114 (45.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
Score = 67 (28.6 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165
Score = 62 (26.9 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 180 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 231
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 263 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 316
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 178 (67.7 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 49/137 (35%), Positives = 70/137 (51%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG LP T E+ R+YF +G + DV + + T RGFGFV+F E D V
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 159 RS-HEICGQQVAIDSATPLD--DAGPSQNFMMNAAETFGGYGGPMRTY-GRMYGSLDFDD 214
++ H++ G+QV + A P D G ++ + + GYGG +Y GRM +
Sbjct: 170 KTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQH 229
Query: 215 WGYGMGSGRPSRGDWRY 231
+G+G PS G Y
Sbjct: 230 --QSVGNGLPSYGSSGY 244
Score = 126 (49.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 32/97 (32%), Positives = 51/97 (52%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSRR 159
K+FVG + E + LR +F+ +G + V K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 160 SHEICGQQVAIDSATPLDDAGPS-QNFMMNAAETFGG 195
H I ++V + A ++ S + +N + + GG
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGG 103
Score = 121 (47.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR-MSHGG 61
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+ + GR M GG
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 203
Query: 62 YGAYNAY 68
G Y Y
Sbjct: 204 SGGYQGY 210
Score = 106 (42.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 34/104 (32%), Positives = 47/104 (45%)
Query: 140 RGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLD--DAGPSQNFMMNAAETFGGY 196
RGFGFV+F E D V ++ H++ G+QV + A P D G ++ + + GY
Sbjct: 151 RGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGY 210
Query: 197 GGPMRTY-GRM------------YGSLDFDDWGYGMGSGRPSRG 227
GG +Y GRM G + GYG G G S G
Sbjct: 211 GGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGNGSNG 254
Score = 61 (26.5 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD--FRPVGRMSHG 60
+D+ + RG GF+ F+ ++ ++ + H + V V RA +E+ G ++
Sbjct: 39 RDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTS 98
Query: 61 GYGAYNAYISAATRYAALGAPTLYD 85
+AY + PTL D
Sbjct: 99 RSSGGDAYNKTKKIFVGGLPPTLTD 123
Score = 59 (25.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 193 FGGYGGPMRTYGRM----YGSLDFDDWGYGMGSGRPSRGDW 229
+GGY G YG YG+ + GYG +G R W
Sbjct: 260 YGGYTGSAGGYGAGATAGYGATNIPGAGYGSSTGVAPRNSW 300
Score = 47 (21.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 188 NAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
N +GGY G YG YG+ GRPS G
Sbjct: 339 NQGYGYGGYSGSDSGYGNQAA--------YGVVGGRPSGG 370
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 170 (64.9 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 48/140 (34%), Positives = 67/140 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L E T E +R YF FG I + +P K + RGF F+TF EE ++
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG---GYGGPMRTYGRMYGSLDFDD 214
++ H +CG + I A P + Q F G G GGP +++ + Y + + +
Sbjct: 189 KKYHNVCGSKCEIKIAQP-KEIYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNN--YWN 245
Query: 215 WGYGMGSGRPSRGDWRYRPY 234
GYG G G G Y Y
Sbjct: 246 QGYG-GQGYGYGGQQGYGGY 264
Score = 135 (52.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YFS+FG ++D + + TG RGFGF+ F E DRV +
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 159 RSHEICGQQV 168
+ H + G+Q+
Sbjct: 106 KEHRLDGRQI 115
Score = 68 (29.0 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F +DSV+ ++ H L G + RA + + PV ++ GG
Sbjct: 79 DSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKE--PVKKIFVGG 135
Score = 59 (25.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 195 GYGGPMRTYGRM--YGSLDFDDWGYGMGSG 222
GYGG + YG YG+ D+ YG GSG
Sbjct: 254 GYGG-QQGYGGYGGYGNYDYSSGYYGYGSG 282
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 167 (63.8 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
Identities = 42/105 (40%), Positives = 56/105 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KK+F+G L +T ED+++YF +G++ D + K T HRGFGFVTF + VAD+V
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRT 202
HEI G+ V A P + P Q AA YG P T
Sbjct: 194 IHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYGMPPET 238
Score = 139 (54.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVA 153
SQ GK +F+G L + TAE+LR YF RFG + + V P RGFGF+TF +
Sbjct: 41 SQDPGK-MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSV 99
Query: 154 DRV-SRRSHEICGQQVAIDSATP 175
D+V + R HE+ G+++ A P
Sbjct: 100 DKVLNNREHELDGKKIDPKVAFP 122
Score = 78 (32.5 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GFITF SV+ ++ + HEL G + A PK + V +
Sbjct: 78 RDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVF 137
Query: 62 YGAYNA 67
G +A
Sbjct: 138 IGGLSA 143
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 156 (60.0 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 51/139 (36%), Positives = 63/139 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + G + I A P + Q F G YGG R GR G Y
Sbjct: 144 KKFHNVSGSKCEIKVAQP-KEVYQQQQFSSGGGR--GSYGGRGRG-GRGGGQ---GSANY 196
Query: 218 GMGSGRPSRGDWR--YRPY 234
G P RG + Y+PY
Sbjct: 197 GK---TPRRGGHQNNYKPY 212
Score = 113 (44.8 bits), Expect = 0.00011, P = 0.00011
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG + D + + TG RGFGF+ F E ++V +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 61 KEHRLDGRLI 70
Score = 64 (27.6 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F SVE ++ H L G + +A + D PV ++ GG
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKD--PVKKIFVGG 90
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 163 (62.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 46/123 (37%), Positives = 61/123 (49%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG LP T E+ + YF +FG I DV V T RGFGF+TF + DRV
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 159 RS-HEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ HE+ G+ V + A P + P N A YGG RM + F+++
Sbjct: 170 KTFHELNGKLVEVKRAVP-KEISPVSNIRSPLASGVN-YGGGSN---RMPANSYFNNFAP 224
Query: 218 GMG 220
G G
Sbjct: 225 GPG 227
Score = 139 (54.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSRR 159
K+F+G + + E LR YFS +G +++ + + TG RGFGF+ FA+ V++RV
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 160 SHEICGQQVAIDSATPLDD 178
H I G+ V A P DD
Sbjct: 67 KHIIDGRTVEAKKAVPRDD 85
Score = 92 (37.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
+D+ + RG GFI FA E +++D H + G TV +A P++D P+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98
Query: 57 MS--HGGYG 63
MS HGG G
Sbjct: 99 MSPVHGGGG 107
Score = 40 (19.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRT--------YGRMYGS 209
D AGP N ++ G +G P + +GR YG+
Sbjct: 321 DTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGT 361
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 159 (61.0 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRVSRR 159
KIFVG + QEAT +D +++F +FGR++D + + K TG RGFGFVTF E + R
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 160 SHEICGQQVAIDSATP 175
EI G+ + + A P
Sbjct: 255 PLEILGKTIEVKKAQP 270
Score = 121 (47.7 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSRR 159
K+F+G L E T + L+ YFS+FG + + V + TG RGFGF+TF + + V +
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 160 SHEICGQQVAIDSATPLDD 178
H + G+ + A P D+
Sbjct: 171 EHYLDGKIIDPKRAIPRDE 189
Score = 84 (34.6 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D + RG GF+TF +V +MV H L G + RA P+ D+ ++ GG
Sbjct: 143 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPR-DEQEKTSKIFVGG 200
Score = 39 (18.8 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 182 SQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
S N M + GG GGP Y + + F+ Y R + + + PY
Sbjct: 430 SGNMNMGSNYAGGGRGGP--GYNA-HEQIAFEQQKYEQQQARRAMENRAFSPY 479
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 160 (61.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 50/134 (37%), Positives = 64/134 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED++ YF +FG I D + K+T HRGFGFVTF E V D+V
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM---YGSLDFDD 214
HEI + V A P + P+ N A Y M G + + + +
Sbjct: 178 IHFHEINNKMVECKKAQPKEVMLPA-NLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAYAA 236
Query: 215 WGYGMG-SGRPSRG 227
+ G G SG PS G
Sbjct: 237 YAAGRGYSGYPSFG 250
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/119 (31%), Positives = 61/119 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + + E LR YF R+G I + V P RGFGFVTF++ D+V ++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 211
+HE+ G++V A P A P + + F GG P +++Y +G ++
Sbjct: 90 GTHELDGKKVDPKVAFPRR-AHPKM--VTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIE 145
Score = 83 (34.3 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR 107
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 165 (63.1 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 49/147 (33%), Positives = 71/147 (48%)
Query: 102 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV- 156
KKIFVG L P+ T E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 157 SRRSHEICGQQVAIDSATPLD-------DAGP--SQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H + G + I A P + +G ++N + GG GG +++ + Y
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY 272
Query: 208 GSLDFDDWGYGMGSGRPSRGDWRYRPY 234
G+ +GY G G P G + Y PY
Sbjct: 273 GNYWNQGYGYQQGYG-PGYGGYDYSPY 298
Score = 115 (45.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 130 KEHRLDGRVI 139
Score = 68 (29.0 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 103 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 159
Score = 62 (26.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 180 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 231
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 263 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 316
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 163 (62.4 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 46/124 (37%), Positives = 58/124 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + G + I A P + Q F G YGG R GR G +W
Sbjct: 144 KKFHNVSGSKCEIKVAQP-KEVYQQQQFSSGGGR--GSYGGRGRG-GR--GGAQSQNWNQ 197
Query: 218 GMGS 221
G G+
Sbjct: 198 GYGN 201
Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG + D + + TG RGFGF+ F E ++V +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 61 KEHRLDGRLI 70
Score = 64 (27.6 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F SVE ++ H L G + +A + D PV ++ GG
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKD--PVKKIFVGG 90
Score = 55 (24.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 182 SQNFMMNAAETFG-GYG----GPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 231
SQN+ + GYG G + YG YG D+ +GY G G G S+G Y
Sbjct: 192 SQNWNQGYGNYWNQGYGNQGYGYQQGYGG-YGGYDYSGYGYYGYGPGYDYSQGSANY 247
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 144 (55.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSRR 159
KIF+G L ++ T ++F ++G I D + + TG RGFGF+TFA+ V D+V
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 195
+H I G+QV I P AG +Q+ + + F G
Sbjct: 80 THVINGKQVEIKRTIP-KGAGGNQSKDIKTKKIFVG 114
Score = 142 (55.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 42/127 (33%), Positives = 70/127 (55%)
Query: 94 GESSQRIG-KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTF-A 148
G S+ I KKIFVG +P T ++L+ +F+++G +++ V + T RGFGFV F +
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Query: 149 EEVVADRVSRRSH-EICGQQVAIDSATP---LDDAGPSQNFM---MNAAETFGGYGGPMR 201
EEVV + +S+ + ++ QV I A P L+ + PS ++ +++ YGGP
Sbjct: 160 EEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Query: 202 TYGRMYG 208
+ YG
Sbjct: 220 GFDGGYG 226
Score = 92 (37.4 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
+D+ + RG GFITFA V+ ++ DTH + G V + R PK
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK 96
Score = 63 (27.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/57 (35%), Positives = 22/57 (38%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRMY--GSLDFDDWGYGMGSGRPSRGDWRYRPY 234
G + E +GGYGGP YG Y G G G GR RY PY
Sbjct: 302 GAYLGYPRGGGEGYGGYGGP--GYGGAYESGGPGGSYEGAGGPYGRGYSSSSRYHPY 356
Score = 57 (25.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 194 GGYG---GPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
GGYG GP+R++G S +GYG GS P G
Sbjct: 223 GGYGHPPGPIRSHGGP-ASRYAGGYGYGRGSVGPEFG 258
Score = 42 (19.8 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GY YG +G + G G G P G Y Y
Sbjct: 279 GYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGY 318
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 161 (61.7 bits), Expect = 9.3e-15, Sum P(3) = 9.3e-15
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTF-AEE 150
+S KKIFVG +P +LR YF+RFG + +V Y ++ RGFGF+TF AE+
Sbjct: 106 KSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQ 165
Query: 151 VVADRVSRRSHEICGQQVAIDSATPLDDAGPS 182
V V+ H+I G++V + A P D P+
Sbjct: 166 SVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPA 197
Score = 118 (46.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAE-EV 151
+ IGK +FVG L T E LR YFS++G ++D + K T RGFGFV F +
Sbjct: 6 AGDEIGK-LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNC 64
Query: 152 VADRVSRRSHEICGQQVAIDSATP 175
V + + H + G+ + TP
Sbjct: 65 VRTVLDTKPHNLDGRNIDPKPCTP 88
Score = 113 (44.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 36/115 (31%), Positives = 54/115 (46%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D + RG GFITF + SV+ + + H++ G V V +A P++ G++ +
Sbjct: 147 DAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQW 206
Query: 63 GAYNAYISAATRYAALGAPTL---YDHPGSFYGRGESSQRIGKKIFVGR-LPQEA 113
G A ISAA +AA APT Y G + G+ G + GR P +A
Sbjct: 207 GP-RAIISAANGWAAQPAPTWQQSYGPQGVWVSTGQPLAGYGPPLPAGRGAPAQA 260
Score = 63 (27.2 bits), Expect = 9.3e-15, Sum P(3) = 9.3e-15
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT--HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ DT H L G + TP+
Sbjct: 44 KDKSTNQSRGFGFVKFKDPNCVRTVL-DTKPHNLDGRNIDPKPCTPR 89
Score = 45 (20.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 165 GQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGS 221
G + P P F++ A T GG+G P + Y + G +GY G+
Sbjct: 247 GPPLPAGRGAPAQAPSPFNAFLVAAPPT-GGFGAP-QGYPQQ-GFSTQPQFGYSFGT 300
Score = 39 (18.8 bits), Expect = 9.3e-15, Sum P(3) = 9.3e-15
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 172 SATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
+ TP D + + + + GYG + +G + Y PS G
Sbjct: 328 ATTPSQDLSKAAPAQPDFSYSQYGYGQDLSAFGHSFADPSQPTASYAAAPSAPSSG 383
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 153 (58.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSRR 159
KIFVG L +E T+ + ++F ++G I D + K +TG RGFGFVT+A+ V D+V +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 160 SHEICGQQVAIDSATP 175
+H I G+QV I P
Sbjct: 103 NHIIIGKQVEIKRTIP 118
Score = 146 (56.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 45/138 (32%), Positives = 66/138 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG +P ++ + +F +FG + + + + TG RGFGFVT+ E + D +
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 159 RSH--EICGQQVAIDSATPLDDAG---PSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFD 213
+ + E+ G QV I A P PS+ F + + GGYG YG +G
Sbjct: 190 KGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDG---YGGGHGG---- 242
Query: 214 DWGYGMGSGRPSRGDWRY 231
GYG G G P + Y
Sbjct: 243 --GYG-GPGGPYKSGGGY 257
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKEDDF--RPVGRMS 58
+D + RG GF+T+ S D V++L+ + EL G+ V + +A PK+ + P R
Sbjct: 163 RDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFG 222
Query: 59 H------GGYG-AYNAYISAATRYAALGAPTLYDHPGSFYGRGES 96
GGYG Y Y G P Y G YG G S
Sbjct: 223 DSRSNFGGGYGDGYGGGHGGG--YGGPGGP--YKSGGG-YGGGRS 262
Score = 88 (36.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWR 230
GP + + E GGYGGP +YG YGS GYG G G G +R
Sbjct: 322 GPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIG--GYGGGMGGAGGGGYR 370
Score = 80 (33.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
KD+ + RG GF+T+A + V+ ++ D H + G V + R P+
Sbjct: 75 KDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPR 119
Score = 57 (25.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGD 228
GGYGG YG +G + GYG G G P RG+
Sbjct: 263 GGYGG----YGGEFGG--YGGGGYGGGVG-PYRGE 290
Score = 53 (23.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 194 GGYGG-PMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG P YG YG GYG SG
Sbjct: 317 GGYGGGPGDMYGGSYGE---PGGGYGGPSG 343
Score = 48 (22.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GGYGG + Y R +L + YG G G +RG +
Sbjct: 278 GGYGGGVGPY-RGEPALGYSG-RYGGGGGGYNRGGY 311
Score = 44 (20.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GGYG G G F G G G G G RY PY
Sbjct: 386 GGYGAG----GGGNGGGSFYGGGGGRG-GYGGGGSGRYHPY 421
Score = 42 (19.8 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 60 GGYGA--YNAYISAATRYAALGAPTLYDHPGSFYGRG 94
GGYG Y + ALG Y G Y RG
Sbjct: 273 GGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRG 309
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 153 (58.9 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 41/122 (33%), Positives = 62/122 (50%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEV 151
ES+ +GK +F+G + + E L+ YF ++G +++ + + TG RGFGF+ FA+
Sbjct: 9 ESASDLGK-LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67
Query: 152 VADRVSRRSHEICGQQVAIDSATPLDDAGPSQNF---MMNAAETFGGYGGPMRTYGRMYG 208
VA+RV H I G+ V A P DD + M + + GG GG RT G
Sbjct: 68 VAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVG 127
Query: 209 SL 210
L
Sbjct: 128 GL 129
Score = 151 (58.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG LP T + + YF +FG I DV V T RGFGF+TF E D V
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 159 RS-HEICGQQVAIDSATP--LDDAGPSQNFMMNAAETFG 194
++ HE+ G+ V + A P L P+++ ++ +G
Sbjct: 182 KTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYG 220
Score = 108 (43.1 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 31/75 (41%), Positives = 38/75 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE R GY
Sbjct: 156 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGY 215
Query: 63 GAYNAYISAATRYAA 77
G N Y R +A
Sbjct: 216 G--NNYGVVPNRSSA 228
Score = 91 (37.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF---RPVGRM-- 57
+D+ + RG GFI FA E +++D H + G TV +A P++D R M
Sbjct: 48 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHL 107
Query: 58 ---SHGGYG 63
SHGG G
Sbjct: 108 ISPSHGGNG 116
Score = 43 (20.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 177 DDAGPSQNFMMNAAETFGGYG-----GPMRTYGRMYGS 209
D +GP N ++ G +G YGR YG+
Sbjct: 327 DSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGA 364
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 163 (62.4 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 38/128 (29%), Positives = 62/128 (48%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAEEVVADRVS 157
G K+F+G LP T DLR +F+R+G++ +V Y ++ RGFGF++F EE + V+
Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154
Query: 158 RRSH-EICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 216
+ + G+QV I A P D +G + +G G +G + ++
Sbjct: 155 NERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQ 214
Query: 217 YGMGSGRP 224
G G P
Sbjct: 215 NGQMGGPP 222
Score = 132 (51.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFAEEVVADRVSRR 159
K+FVG L E T E+L RYF RFG I+D V K +G RGFGFVTFA+ + V +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 160 S-HEICGQQV 168
H + G+ +
Sbjct: 68 GPHTLDGRTI 77
Score = 66 (28.3 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ D PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI--D---PKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYI 69
Y ++
Sbjct: 95 --GYKVFL 100
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 172 SATPLDDAGPSQNFMMNAAETFGGYGGPMRT----YGRMYGSLDFDDWGYGMG 220
+ T D +Q + T G GG RT GS ++D GYG G
Sbjct: 329 AGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGS-EYDYGGYGSG 380
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 172 (65.6 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 45/137 (32%), Positives = 72/137 (52%)
Query: 62 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+G+Y+A + T R+ G P S +G Q + K+FVGR ++ ++DLR
Sbjct: 155 FGSYDAQMRVLTNRHLIDGRWCEVKVPNS---KGMGHQ-VPCKVFVGRCTEDINSDDLRE 210
Query: 121 YFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAG 180
YFS+FG + DV++P+ R F FVTF + VA + H I G V + +A P +
Sbjct: 211 YFSKFGEVTDVFIPRP--FRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQN 268
Query: 181 PSQ---NFMMNAAETFG 194
+Q ++ N+A +FG
Sbjct: 269 RNQQVQSYNYNSANSFG 285
Score = 39 (18.8 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 182 SQNFMMNAAETFGGYGGP 199
+QN N A FGG GP
Sbjct: 471 AQNGGHNNANNFGGRKGP 488
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 149 (57.5 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 43/133 (32%), Positives = 68/133 (51%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK++VG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D++ +
Sbjct: 116 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQ 175
Query: 159 RSHEICGQQVAIDS--ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 216
+ H I G + + + AG SQ A+ F G GG GR +G G
Sbjct: 176 KHHAINGNNCEVGKVLSKEMQSAG-SQRGRGGASGNFMGRGGNFG--GRNFGGRG----G 228
Query: 217 YGMGSGRPSRGDW 229
YG G G SRG +
Sbjct: 229 YG-GGGGGSRGSY 240
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 45/147 (30%), Positives = 70/147 (47%)
Query: 91 YGRGESSQRIGK---KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTF 147
+G G+ S K K+F+G L E T + LR +F ++G + D KR+ RGFGF+T+
Sbjct: 18 WGTGKHSPGTEKELRKLFIGGLSFETTDDSLREHFEKWGTLTDCG-NKRS--RGFGFLTY 74
Query: 148 A--EEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----M 200
+ EEV A V R H+ + V + + D P + M+ GG +
Sbjct: 75 SCVEEVDA-AVCARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYV-GGIKEDTEEYNL 132
Query: 201 RTYGRMYGSLDFDDWGYGMGSGRPSRG 227
R Y + YG ++ + G SG+ RG
Sbjct: 133 RGYFKKYGKIETIEVMEGRQSGK-KRG 158
Score = 74 (31.1 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
D G+K RG GF+T++ + V+ + VV RA +ED +P
Sbjct: 60 DCGNKRSRGFGFLTYSCVEEVDAAVCARPHKAAVRVVGKRAVSREDSVKP 109
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 154 (59.3 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 48/148 (32%), Positives = 67/148 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 158 RRSHEICG-QQVAIDSATPLDDAGPSQNFMMNAAETF----------GGYGGPMRTYGRM 206
++ H I G ++ + PL ++ E GG G +++ +
Sbjct: 144 KKFHTISGSKRCGLGVGLPLQLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWNQG 203
Query: 207 YGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
YG+ +GY G G P G + Y PY
Sbjct: 204 YGNYWNQGYGYQQGYG-PGYGGYDYSPY 230
Score = 115 (45.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 61 KEHRLDGRVI 70
Score = 68 (29.0 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 34 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 90
Score = 60 (26.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 231
GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 211 GYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 248
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 154 (59.3 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 50/141 (35%), Positives = 69/141 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG LP T+++ R YF +G + D + + + T RGFGFV+F E D V
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 159 RS-HEICGQQVAIDSATPLDDAGPS----QNFMMNAAETFGGYGGPMRTYGRMY-GSLDF 212
++ H++ G+QV + A P DA P A F GYGG + G Y G +D
Sbjct: 170 KTFHDLNGKQVEVKRALP-KDANPGIASGGGRGSGGAGGFPGYGG---SGGSGYEGRVDS 225
Query: 213 DDW--GYGMGSGRPSRGDWRY 231
+ + GSG P G Y
Sbjct: 226 NRYMQPQNTGSGYPPYGGSGY 246
Score = 153 (58.9 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 40/112 (35%), Positives = 57/112 (50%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSRR 159
K+F+G + + LR YFS FG +L V V K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 160 SHEICGQQVAIDSATPLDDAGPS-QNFMMNAAETFGGYGGPMRTYGRMYGSL 210
H I + V + A ++ P+ ++ NA+ F G +RT G L
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDS-GANVRTKKIFVGGL 117
Score = 107 (42.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
DQ ++ RG GF++F S DSV+ ++ T H+L G V V RA PK D P G S GG
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK--DANP-GIASGGGR 200
Query: 63 GAYNA 67
G+ A
Sbjct: 201 GSGGA 205
Score = 78 (32.5 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+++ + RG GF+ F+ ++ ++ D H + V V RA +E+ P GR G +
Sbjct: 39 REKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQ-SPAGRS--GTF 95
Query: 63 GAYNAYISAA 72
A + S A
Sbjct: 96 NASRNFDSGA 105
Score = 56 (24.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 193 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
FGGYG P G YG+ G G GSG P R W
Sbjct: 262 FGGYGNPA---GAPYGNPSVP--GAGFGSG-P-RSSW 291
Score = 56 (24.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 188 NAAETFGGYGGP-MRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
NAA +GG GGP G+ S + GYG G S G
Sbjct: 306 NAAP-WGGSGGPGSAVMGQAGASAGYGSQGYGYGGNDSSYG 345
Score = 45 (20.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 190 AETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSR 226
A+ G GG YG G+ +G G GSGR ++
Sbjct: 370 ADALDGSGG----YGNHQGNNGQAGYGGGYGSGRQAQ 402
Score = 45 (20.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 168 VAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG----YGMGSGR 223
V +A P +G + +M A GYG + YG YG D +G YG GR
Sbjct: 302 VGYGNAAPWGGSGGPGSAVMGQAGASAGYGS--QGYG--YGGND-SSYGTPSAYGAVGGR 356
Score = 44 (20.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 182 SQNFMM--NAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPS 225
S +M N + YGG G YGS G+G G G P+
Sbjct: 225 SNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFG-GYGNPA 269
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 149 (57.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 43/133 (32%), Positives = 68/133 (51%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK++VG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D++ +
Sbjct: 86 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQ 145
Query: 159 RSHEICGQQVAIDS--ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 216
+ H I G + + + AG SQ A+ F G GG GR +G G
Sbjct: 146 KHHAINGNNCEVGKVLSKEMQSAG-SQRGRGGASGNFMGRGGNFG--GRNFGGRG----G 198
Query: 217 YGMGSGRPSRGDW 229
YG G G SRG +
Sbjct: 199 YG-GGGGGSRGSY 210
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 41/133 (30%), Positives = 65/133 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFA--EEVVADRVSRR 159
+K+F+G L E T + LR +F ++G + D KR+ RGFGF+T++ EEV A V R
Sbjct: 2 RKLFIGGLSFETTDDSLREHFEKWGTLTDCG-NKRS--RGFGFLTYSCVEEVDA-AVCAR 57
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLDFDD 214
H+ + V + + D P + M+ GG +R Y + YG ++ +
Sbjct: 58 PHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYV-GGIKEDTEEYNLRGYFKKYGKIETIE 116
Query: 215 WGYGMGSGRPSRG 227
G SG+ RG
Sbjct: 117 VMEGRQSGK-KRG 128
Score = 74 (31.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
D G+K RG GF+T++ + V+ + VV RA +ED +P
Sbjct: 30 DCGNKRSRGFGFLTYSCVEEVDAAVCARPHKAAVRVVGKRAVSREDSVKP 79
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 149 (57.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 43/134 (32%), Positives = 64/134 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDV--YVPKRTGH-RGFGFVTFAEEVVADRVS- 157
KK+FVG L + + +R YF FG I+D+ + K TG RGF FV F + D+V
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H++ G+ V + A P QN GG GGP G G++ ++G
Sbjct: 182 QKQHQLNGKMVDVKKALP------KQNDQQGGG---GGRGGPGGRAGGNRGNMGGGNYGN 232
Query: 218 GMGSGRPSRG--DW 229
G G + G +W
Sbjct: 233 QNGGGNWNNGGNNW 246
Score = 134 (52.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSR 158
+K+F+G L T E+L+ +F ++G I+DV V K RT RGFGF+T++ + D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 159 -RSHEICGQQVAIDSATPLDD 178
R H+I G+ V A P D
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQD 111
Score = 79 (32.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
KD +K RG GFIT++ + ++ H++ G V RA P++D
Sbjct: 64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
Score = 42 (19.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDD-WGYGMGSGRPSRG--DW 229
++ G + N+ N+ FGG GG YG S ++ W G G G G +W
Sbjct: 248 NNRGGNDNWGNNS---FGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNW 300
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 144 (55.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 45/141 (31%), Positives = 65/141 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 163
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG G
Sbjct: 164 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGGNFGRGGNYG 222
Query: 208 GSLDFDDWGYGMGSGRPSRGD 228
G + G G G G P G+
Sbjct: 223 GGPGYSSRG-GYGGGGPGYGN 242
Score = 117 (46.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 71
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 72 CARPHKVDGRVVEPKRAVSREDS 94
Score = 83 (34.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 46 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97
Score = 47 (21.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 293 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 322
Score = 45 (20.9 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG G GYG G G
Sbjct: 231 GGYGGGGPGYGNQGG-------GYGGGGG 252
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 152 (58.6 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +FG++ D + K T HRGFGFVTF E V ++V
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 115 (45.5 bits), Expect = 0.00022, P = 0.00022
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + T E L+ YF +FG + + V P RGFGFVTF ++ D+V ++
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 159 RSHEICGQQVAIDSATP 175
HE+ + + A P
Sbjct: 81 TRHELDSKTIDPKVAFP 97
Score = 73 (30.8 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
+D +K RG GF+TF V+ ++ T HEL T+ A P+
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPR 98
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 156 (60.0 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 50/146 (34%), Positives = 69/146 (47%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFA 148
G+ E ++ KKIFVG L + E L+ YFS+FG I V K TG RGFGFV F
Sbjct: 88 GKPEMLAKV-KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFD 146
Query: 149 EEVVADR-VSRRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFG-GYGGPMRTY 203
+ AD+ V + H ICG +V + A + G + G G+GG R
Sbjct: 147 DNDSADKAVVMKFHSICGHKVEVKKALTKQEMQSTGGGRGGRGGRGMGRGSGFGGGGR-- 204
Query: 204 GRMYGSLDFDDWGYGMGSGRPSRGDW 229
G Y + + G+G SG S+ +
Sbjct: 205 GGYYNDYGYQNNGFGNNSGYDSQNGY 230
Score = 116 (45.9 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKRTGHRG--FGFVTFAEEVVADR-VSR 158
K+FVG L + T E LR +F ++G++ D V V + R FGFVT++ AD +S
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 159 RSHEICGQQVAIDSATPLDDAG 180
R H + G V + A +DAG
Sbjct: 67 RPHIVDGNNVDLKRAVAREDAG 88
Score = 63 (27.2 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+Q + R GF+T++S + + M H + G+ V + RA +ED +P
Sbjct: 40 NQPLQRSRCFGFVTYSSTEEADAAMSARPHIVDGNNVDLKRAVAREDAGKP 90
Score = 37 (18.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 177 DDAGPSQN-FMMNAA-ETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGD 228
+D G N F N+ ++ GYGG Y G GYG G+G G+
Sbjct: 209 NDYGYQNNGFGNNSGYDSQNGYGGG---YSDQMGG------GYGNGNGYSDFGE 253
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 152 (58.6 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 40/113 (35%), Positives = 62/113 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG + Q+ +AE+++ YFS+FG + + + + ++T HRGFGFVTF E V DRV
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTY-GRMYGS 209
H I ++V A P + P+ + G G + T G++ G+
Sbjct: 351 IHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRI-MLGTLGVQLPTAPGQLIGA 402
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEE 150
G S K+FVG L + +++ L+ YF+ FG + DV + P RGFGF+TF E
Sbjct: 195 GSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEP 254
Query: 151 VVADRVSRRS-HEICGQQVAIDSATP 175
++V + H + G+++ ATP
Sbjct: 255 CTVEKVLKVPIHTLDGKKIDPKHATP 280
Score = 79 (32.9 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47
KD ++ RG GFITF +VE ++ V H L G + ATPK
Sbjct: 236 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPK 281
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 138 (53.6 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 44/135 (32%), Positives = 67/135 (49%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 103 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 162
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM + FGG GG +GR
Sbjct: 163 QKYHTINGHNCEVKKALSKQEMQSAGSQRGCGGGSGNFMGHGGN-FGGGGG---NFGRG- 217
Query: 208 GSLDFDDWGYGMGSG 222
G+ + + G G G G
Sbjct: 218 GNSGYGNQGGGYGGG 232
Score = 128 (50.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 37/120 (30%), Positives = 59/120 (49%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSR 158
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ E V +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 159 RSHEICGQQVAIDSATPLDDA-GPSQN------FMMNAAETFGGYGGPMRTYGRMYGSLD 211
R H++ G+ V A +D+ P + F+ E G Y +R Y YG ++
Sbjct: 73 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYN--LRDYFEKYGKIE 130
Score = 78 (32.5 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ S + V+ M H++ G V RA +ED +P
Sbjct: 46 RDPQTKRSRGFGFVTY-SCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 96
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 141 (54.7 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 48/142 (33%), Positives = 68/142 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 208 GSLDFDDWGYGMGSGRPSRGDW 229
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 117 (46.2 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 83 (34.3 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 47 (21.6 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 291 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 320
>GENEDB_PFALCIPARUM|PF11_0083 [details] [associations]
symbol:PF11_0083 "nucleic acid binding factor,
putative" species:5833 "Plasmodium falciparum" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014186 RefSeq:XP_001347758.2 ProteinModelPortal:Q8IIT2
EnsemblProtists:PF11_0083:mRNA GeneID:810634 KEGG:pfa:PF11_0083
EuPathDB:PlasmoDB:PF3D7_1107100 HOGENOM:HOG000282219
ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 179 (68.1 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH---RGFGFVTFAEEVVADRVSRR 159
+IF RLP EA+ +DL +YFS+FG+I+D+YV + + +GFGFV+F ++ ++V +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSRNISNNKNKGFGFVSFEKQESMNKVLKE 286
Query: 160 S-HEICGQQVAIDSATPLDDAG------PSQNFMM 187
H ICG+++ +D A+ DD PS+N++M
Sbjct: 287 KLHIICGKEIVVDVASMRDDKYKHLFHMPSENYLM 321
Score = 139 (54.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFAE- 149
G+ + G K+FV +L T E LR YF +FG I+D+Y+P T RG FVTF +
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMPNDVYTNRPRGIAFVTFLDN 553
Query: 150 EVVADRVS--RRSHEICGQQVAIDSATP 175
E V + +S H I G++V +D A P
Sbjct: 554 ESVKNILSDEHSKHIIDGKEVVLDLADP 581
Score = 73 (30.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 10 HRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
++G GF++F +S+ ++ + H + G +VVD A+ ++D ++ + M Y
Sbjct: 266 NKGFGFVSFEKQESMNKVLKEKLHIICGKEIVVDVASMRDDKYKHLFHMPSENY 319
>UNIPROTKB|Q8IIT2 [details] [associations]
symbol:PF11_0083 "Nucleic acid binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014186 RefSeq:XP_001347758.2
ProteinModelPortal:Q8IIT2 EnsemblProtists:PF11_0083:mRNA
GeneID:810634 KEGG:pfa:PF11_0083 EuPathDB:PlasmoDB:PF3D7_1107100
HOGENOM:HOG000282219 ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 179 (68.1 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH---RGFGFVTFAEEVVADRVSRR 159
+IF RLP EA+ +DL +YFS+FG+I+D+YV + + +GFGFV+F ++ ++V +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSRNISNNKNKGFGFVSFEKQESMNKVLKE 286
Query: 160 S-HEICGQQVAIDSATPLDDAG------PSQNFMM 187
H ICG+++ +D A+ DD PS+N++M
Sbjct: 287 KLHIICGKEIVVDVASMRDDKYKHLFHMPSENYLM 321
Score = 139 (54.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFAE- 149
G+ + G K+FV +L T E LR YF +FG I+D+Y+P T RG FVTF +
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMPNDVYTNRPRGIAFVTFLDN 553
Query: 150 EVVADRVS--RRSHEICGQQVAIDSATP 175
E V + +S H I G++V +D A P
Sbjct: 554 ESVKNILSDEHSKHIIDGKEVVLDLADP 581
Score = 73 (30.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 10 HRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
++G GF++F +S+ ++ + H + G +VVD A+ ++D ++ + M Y
Sbjct: 266 NKGFGFVSFEKQESMNKVLKEKLHIICGKEIVVDVASMRDDKYKHLFHMPSENY 319
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 100 (40.3 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIFVG + ++ LR YF ++G+I +++ + +G RGF FVT
Sbjct: 48 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 107
Query: 147 F 147
F
Sbjct: 108 F 108
Score = 91 (37.1 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 2 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 53
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 152 (58.6 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 136 IHFHEINNKMVECKKAQPKEVMSPT 160
Score = 68 (29.0 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 20 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 74
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 145 (56.1 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 33/78 (42%), Positives = 44/78 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L ED+++YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 159 -RSHEICGQQVAIDSATP 175
HEI + V A P
Sbjct: 170 IHFHEINNKMVECKKAQP 187
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA 148
G SQ K+F+G L + + + LR YF +FG I + V P RGFGF+TFA
Sbjct: 11 GSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFA 70
Query: 149 EEVVADRV-SRRSHEICGQQVAIDSATP 175
+ D+V ++ HE+ + + A P
Sbjct: 71 DVSSVDKVLAQPHHELDSKTIDPKVAFP 98
Score = 81 (33.6 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GFITFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTR 108
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 166 (63.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 43/113 (38%), Positives = 58/113 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSRR 159
K+F+G + + E L+ YFS FG +++ + K TG RGFGFV FA+ VA+ V
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFM--MNAAETFGGYGGPMRTYGRMYGSL 210
H I G+ V A P DD QN + N++ G GGP RT G L
Sbjct: 67 KHNIDGRLVEAKKAVPRDD----QNMVNRSNSSSIQGSPGGPGRTRKIFVGGL 115
Score = 149 (57.5 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 36/98 (36%), Positives = 54/98 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSR 158
+KIFVG LP T D + YF +FG DV V T RGFGF+T+ E ++V
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 159 RS-HEICGQQVAIDSATPLD-DAGPSQNFMMNAAETFG 194
++ HE+ G+ V + A P + GPS++ + A ++G
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRS-PLGAGYSYG 204
Score = 79 (32.9 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
>UNIPROTKB|B4DJ45 [details] [associations]
symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
Uniprot:B4DJ45
Length = 298
Score = 164 (62.8 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 39/125 (31%), Positives = 67/125 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A
Sbjct: 75 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQ------- 125
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 126 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 184
Query: 221 SGRPS 225
+ + S
Sbjct: 185 NNQGS 189
Score = 44 (20.5 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 21 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 54
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 152 (58.6 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 149 IHFHEINNKMVECKKAQPKEVMSPT 173
Score = 122 (48.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 61 SRHELDSKTIDPKVAFP 77
Score = 68 (29.0 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 33 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 87
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 163 (62.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 39/125 (31%), Positives = 68/125 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++L+++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 124 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 174
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 175 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 233
Query: 221 SGRPS 225
+ + S
Sbjct: 234 NNQGS 238
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 34 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQV 92
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 93 KVMSQRHMIDGR 104
Score = 43 (20.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 70 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 103
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 164 (62.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 37/109 (33%), Positives = 62/109 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++LR++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGG-PMRTYGRMYG 208
+CG+ + I + + +A P N E G +GG P+ +YG
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPVHLISNVYG 289
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 43 (20.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 151 (58.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED++ YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 136 IHFHEINNKMVECKKAQPKEVMSPT 160
Score = 68 (29.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 20 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 74
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 138 (53.6 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 48/142 (33%), Positives = 68/142 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 100 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 159
Query: 158 RRSHEICGQQVAIDSATPLDDA---------GPSQNFMMNAAETFGGYGGPMRTYGRMYG 208
++ H I G + A + G S NFM FGG GG +GR G
Sbjct: 160 QKYHTINGHNCEVKKALSKQEMQTASSQRGKGGSGNFMGRG--NFGGGGG---NFGR--G 212
Query: 209 SLDFDDWGYGMGSGRP-SRGDW 229
GYG G G SRG +
Sbjct: 213 GNFGGRGGYGGGGGGGGSRGSF 234
Score = 122 (48.0 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 67
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
S R H++ G+ V A +D+
Sbjct: 68 SARPHKVDGRVVEPKRAVSREDS 90
Score = 83 (34.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 42 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 93
Score = 48 (22.0 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GG GG ++G G F D YG GSG
Sbjct: 225 GGGGGSRGSFGGGDGYNGFGDGNYG-GSG 252
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 152 (58.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 68 (29.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 167 (63.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 40/125 (32%), Positives = 68/125 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++LR++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 300
Query: 221 SGRPS 225
+ + S
Sbjct: 301 NNQGS 305
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 43 (20.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 167 (63.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 40/125 (32%), Positives = 68/125 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++LR++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 300
Query: 221 SGRPS 225
+ + S
Sbjct: 301 NNQGS 305
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 43 (20.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 138 (53.6 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 44/138 (31%), Positives = 63/138 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGHRGFGFVTFAEEVVADR-VSR 158
KK+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V +
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKRGFGFVTFDDHDPVDKIVLQ 159
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAET--FGGYGGPMRTYGRMYGSLDFDDWG 216
+ H G + A + QN T FG G G GS +F
Sbjct: 160 KYHTKNGHNAEVRKALSRQEMQEVQNSRSGRPRTLLFGDSRGGGGNSGPGPGS-NFRGGS 218
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 219 DGYGSGR-GFGDG-YNGY 234
Score = 128 (50.1 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 39/120 (32%), Positives = 58/120 (48%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVSR 158
K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 159 RSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 211
R H I G+ V A +++G P + + + F GG +R Y YG +D
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 127
Score = 84 (34.6 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVVEPKRAVAREESGKP 93
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 127 (49.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ LR YF ++G+ ++++ + +G RGF FVTF + D+ V
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVI 157
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + G + A P + G S + GG+GG +GR G +F G
Sbjct: 158 QKYHTVNGHNCEVRKA-PSNQRGRSGSGNFGGGRG-GGFGGN-DNFGR--GG-NFSGRG- 210
Query: 218 GMGSGRPSRG 227
G G R G
Sbjct: 211 GFGGSRGGGG 220
Score = 127 (49.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 43/136 (31%), Positives = 64/136 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 65
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 211
+ R H++ G+ V A +D+ ++ GG +R Y YG +
Sbjct: 66 NARPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTE 125
Query: 212 FDDWGYGMGSGRPSRG 227
+ GSG+ RG
Sbjct: 126 VIEIVTDRGSGK-KRG 140
Score = 92 (37.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 40 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVNGRVVEPKRAVSREDSQRP 91
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 141 (54.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 48/142 (33%), Positives = 68/142 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 208 GSLDFDDWGYGMGSGRPSRGDW 229
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 83 (34.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 53 (23.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 349 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 378
Score = 45 (20.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG G GYG G G
Sbjct: 287 GGYGGGGPGYGNQGG-------GYGGGGG 308
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 141 (54.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 48/142 (33%), Positives = 68/142 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 208 GSLDFDDWGYGMGSGRPSRGDW 229
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 83 (34.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 53 (23.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 350 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 379
Score = 45 (20.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG G GYG G G
Sbjct: 287 GGYGGGGPGYGNQGG-------GYGGGGG 308
Score = 38 (18.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GGYGG Y +F YG G G++
Sbjct: 301 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 336
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 141 (54.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 48/142 (33%), Positives = 68/142 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 208 GSLDFDDWGYGMGSGRPSRGDW 229
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 83 (34.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 53 (23.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 350 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 379
Score = 45 (20.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG G GYG G G
Sbjct: 287 GGYGGGGPGYGNQGG-------GYGGGGG 308
Score = 38 (18.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GGYGG Y +F YG G G++
Sbjct: 301 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 336
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 141 (54.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 48/142 (33%), Positives = 68/142 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 208 GSLDFDDWGYGMGSGRPSRGDW 229
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 83 (34.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 53 (23.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 351 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 380
Score = 41 (19.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
GGYG YG G D + G G G G
Sbjct: 295 GGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGG 328
Score = 39 (18.8 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 193 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRP 224
+ G+GG YG G + G G G G P
Sbjct: 267 YNGFGGDGGNYG---GGPGYSSRG-GYGGGGP 294
Score = 38 (18.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GGYGG Y +F YG G G++
Sbjct: 302 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 337
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 141 (54.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 45/132 (34%), Positives = 63/132 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ H I G +V + A P +D S + + GG GG R GR L G
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIH-SGGGGGGSRSSRGGRGGRGRGGGRDQNGLS--KGGG 214
Query: 218 GMGSGRPSRGDW 229
G G G S G +
Sbjct: 215 GGGGGYNSYGGY 226
Score = 99 (39.9 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEV 151
E+SQ K+F+G L + + LR +F FG + D V P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 152 VADRVSRRS-HEICGQQVAIDSATPLDDA 179
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 79 (32.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 47 (21.6 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 194 GGYGGPMRTYGRMYGSLDF--DDWGYGMGS-GRPSRGDWRYRP 233
GG GG YG G + D+G G G G S+ Y P
Sbjct: 230 GGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 272
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 144 (55.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 46/137 (33%), Positives = 69/137 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 110 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 169
Query: 158 RRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG-SLDFD 213
++ H I G + A + AG SQ + F G+GG G +G +F
Sbjct: 170 QKYHTINGHNCEVKKALSKQEMQSAG-SQRGCGGGSGNFMGHGGNFGGGGGNFGRGGNFG 228
Query: 214 D-WGYGMGSGRPSRGDW 229
GYG G G SRG +
Sbjct: 229 GRGGYG-GGGGGSRGSY 244
Score = 78 (32.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ S + V+ M H++ G V RA +ED +P
Sbjct: 53 RDPQTKRSRGFGFVTY-SCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 103
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 151 (58.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED++ YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 68 (29.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 151 (58.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED++ YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 68 (29.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 151 (58.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED++ YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 68 (29.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 145 (56.1 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 39/124 (31%), Positives = 62/124 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D++ +
Sbjct: 109 KKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQ 168
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYG 218
+ H I G + A + S FGG GG +G +G + +GYG
Sbjct: 169 KYHTINGHNYEVKKAVSKQEM-QSAGSQRGRGGNFGGGGG---NFG--HGG---NGYGYG 219
Query: 219 MGSG 222
G G
Sbjct: 220 DGGG 223
Score = 61 (26.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 3 KDQGSKAHRGIGFI-TFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D K R GF+ T++ V+ M H++ G V RA +ED +P
Sbjct: 50 RDLQIKRSRSFGFVSTYSCVKEVDAAMCARPHKVDGHVVEPKRAVSREDSVKP 102
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 140 (54.3 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 45/136 (33%), Positives = 66/136 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 158 RRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H I G + A + AG SQ + F G GG G +F
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAG-SQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGG 244
Query: 215 -WGYGMGSGRPSRGDW 229
GYG G G SRG +
Sbjct: 245 RGGYG-GGGGGSRGSY 259
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 83 (34.3 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 53 (23.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG +YG Y D YG G G SRG +
Sbjct: 250 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 288
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 349 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 378
Score = 45 (20.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG G GYG G G
Sbjct: 286 GGYGGGGPGYGNQGG-------GYGGGGG 307
Score = 38 (18.4 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GGYGG Y +F YG G G++
Sbjct: 300 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 335
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 150 (57.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 45/130 (34%), Positives = 66/130 (50%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R ++S+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 133 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 190
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 198
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 191 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 248
Query: 199 PMRTYGRMYG 208
P T+ + YG
Sbjct: 249 PPPTWQQGYG 258
Score = 126 (49.4 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 41/134 (30%), Positives = 64/134 (47%)
Query: 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RT 137
GAP+ H S R +++Q +K+FVG L T E LR YFS++G ++D + K +T
Sbjct: 37 GAPS---H-SSVSAR-KAAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 91
Query: 138 GH--RGFGFVTFAE-EVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG 194
+ RGFGFV F + V ++ R H + G+ + P D S +
Sbjct: 92 TNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNC 151
Query: 195 GYGGPMRTYGRMYG 208
G +R Y + +G
Sbjct: 152 GET-ELREYFKKFG 164
Score = 59 (25.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDD 50
KD+ + RG GF+ F + V ++ H L G + + P+ D+
Sbjct: 88 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSDN 136
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 136 (52.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 42/130 (32%), Positives = 62/130 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 112 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 171
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H I G + A S+ M A+ G GG GR G+ G
Sbjct: 172 QKYHTINGHNCEVKKAL-------SKQEMQTASSQRGRGGGSGNFMGR--GNFGGGGGGG 222
Query: 218 GMGSGRPSRG 227
G G G P G
Sbjct: 223 GPGYGNPGGG 232
Score = 122 (48.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 79
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
S R H++ G+ V A +D+
Sbjct: 80 SARPHKVDGRVVEPKRAVSREDS 102
Score = 83 (34.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 54 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 105
Score = 51 (23.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 193 FGGYGGPMRT-YGRMYGSLDFDD--------WGYGMGSGRPSRGDWRY 231
FG Y G ++ YG M G F GYG GSG G R+
Sbjct: 263 FGNYSGQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGSGGYGGRRF 310
Score = 43 (20.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GYG P YG G D + G G G G Y +
Sbjct: 225 GYGNPGGGYGGGGGGYDGYNEGGNFGGGNYG-GSGNYNDF 263
Score = 40 (19.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG Y +F YG GSG
Sbjct: 231 GGYGGGGGGYDGYNEGGNFGGGNYG-GSG 258
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 151 (58.2 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 47/137 (34%), Positives = 67/137 (48%)
Query: 87 PGSFYGRGE-SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGF 142
P + +G S KIFVG +P +LR YF +FG + +V Y ++ RGF
Sbjct: 87 PKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 146
Query: 143 GFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDA----GP---SQ---NFMMNAAE 191
GF+TF +E D+ V+ H+I G++V + A P D GP SQ M +AA
Sbjct: 147 GFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWGSRIMPSAAN 206
Query: 192 TFGGYGGPMRTYGRMYG 208
G G P T+ + YG
Sbjct: 207 --GWAGQPPPTWQQGYG 221
Score = 120 (47.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVVADRVSR 158
K+FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V ++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 159 RSHEICGQQVAIDSATP 175
R H + G+ + TP
Sbjct: 61 RPHTLDGRNIDPKPCTP 77
Score = 57 (25.1 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 33 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 78
Score = 43 (20.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 180 GPSQNFMMNAAETFGGYGGP 199
GP Q + A + GGYG P
Sbjct: 221 GP-QGMWVPAGQAIGGYGPP 239
Score = 38 (18.4 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
GYG + +G+ + YG S +PS G
Sbjct: 342 GYGQDLSGFGQGFSDPSQQPPPYGGPSVQPSSG 374
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 139 (54.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 45/137 (32%), Positives = 66/137 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 162
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD------ 211
+ H I G +V + A P +D S + + GG GG R GR L
Sbjct: 163 VKFHPIQGHRVEVKKAVPKEDIH-SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGG 221
Query: 212 FDDWG-YGMGSGRPSRG 227
++ +G YG G G + G
Sbjct: 222 YNSYGGYGGGGGYNAYG 238
Score = 99 (39.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEV 151
E+SQ K+F+G L + + LR +F FG + D V P+ R FGFVT++
Sbjct: 7 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 64
Query: 152 VADRVSRRS-HEICGQQVAIDSATPLDDA 179
AD S H + G V + A +D+
Sbjct: 65 EADAAMAASPHAVDGNTVELKRAVSREDS 93
Score = 79 (32.9 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 49 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 96
Score = 50 (22.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 192 TFGGYGGP--MRTYGRMYGSLDF--DDWGYGMGS-GRPSRGDWRYRP 233
++GGYGG YG G + D+G G G G S+ Y P
Sbjct: 224 SYGGYGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 270
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 161 (61.7 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 36/109 (33%), Positives = 61/109 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGG-PMRTYGRMYG 208
+CG+ + I + + +A P N E G +GG P+ +YG
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPVHLISNVYG 289
Score = 127 (49.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 195
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 160 KVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
Score = 44 (20.5 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 138 (53.6 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 45/138 (32%), Positives = 62/138 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG- 216
+ H I G +V + A P +D S + + GG GG R GR L G
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIY-SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGG 216
Query: 217 YGMGSGRPSRGDWRYRPY 234
Y G G Y Y
Sbjct: 217 YNSYGGYGGGGGGGYNAY 234
Score = 99 (39.9 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEV 151
E+SQ K+F+G L + + LR +F FG + D V P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 152 VADRVSRRS-HEICGQQVAIDSATPLDDA 179
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 79 (32.9 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 47 (21.6 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 194 GGYGGPMRTYGRMYGSLDF--DDWGYGMGS-GRPSRGDWRYRP 233
GG GG YG G + D+G G G G S+ Y P
Sbjct: 225 GGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 267
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 138 (53.6 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 44/132 (33%), Positives = 64/132 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 162
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD------ 211
+ H I G +V + A P +D S + + GG GG R GR L
Sbjct: 163 VKFHPIQGHRVEVKKAVPKEDIH-SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGG 221
Query: 212 FDDWG-YGMGSG 222
++ +G YG G G
Sbjct: 222 YNSYGGYGGGGG 233
Score = 79 (32.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 49 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 96
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 140 (54.3 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRVSRR 159
K+FVG +P + T E+ R +F++FGR+LD + + K TG RGFGFVT+ E + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 160 SH-EICGQQVAIDSATP 175
+ I G+ V + ATP
Sbjct: 308 PYITIHGKPVEVKRATP 324
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSRR 159
K+F+G L E T + LR YF +FG +LD V + TG RGFGF+TF + V +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 160 SHEICGQQVAIDSATPLDD 178
H + G+ + A P ++
Sbjct: 224 EHHLDGKIIDPKRAIPREE 242
Score = 83 (34.3 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D + RG GF+TF + V +M H L G + RA P+E+ + +M GG
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK-TAKMFVGG 253
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 138 (53.6 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 45/138 (32%), Positives = 64/138 (46%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFA 148
G+ E+ ++ KKIF+G L + + LR FS+FG + +V K TG RGFGFV F
Sbjct: 92 GKPEALAKV-KKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFE 150
Query: 149 EEVVADR-VSRRSHEICGQQVAIDSATPLDD--AGPSQNFMMNAAETFGGYGGPMRTYGR 205
+ AD+ V + H I G +V + A + A S+ G G P YG
Sbjct: 151 DNDSADKAVVLKFHMINGHKVEVKKALTKQEMQAAGSRGGGRGGRGGGRGMGRPQNGYGG 210
Query: 206 MYGSL-DFDDWGYGMGSG 222
G ++ GYG G
Sbjct: 211 RGGGYGNYGGGGYGGNDG 228
Score = 114 (45.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG---HRGFGFVTFAEEVVADR-VSR 158
K+FVG L + T + LR +F ++G++ D V + R FGFVT++ AD +S
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 159 RSHEICGQQVAIDSATPLDDAG 180
R H + G V + A +DAG
Sbjct: 71 RPHILDGNNVELKRAVAREDAG 92
Score = 83 (34.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 36/108 (33%), Positives = 45/108 (41%)
Query: 130 DVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDD--AGPSQNF 185
+V K TG RGFGFV F + AD+ V + H I G +V + A + A S+
Sbjct: 131 EVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQAAGSRGG 190
Query: 186 ----------MMNAAETFGGYGGPMRTYGRM-YGSLDFDDWGYGMGSG 222
M +GG GG YG YG D GYG G G
Sbjct: 191 GRGGRGGGRGMGRPQNGYGGRGGGYGNYGGGGYGGNDGYGGGYGGGYG 238
Score = 78 (32.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
++Q K R GF+T++S D ++ M H L G+ V + RA +ED +P
Sbjct: 43 QNQQLKRSRCFGFVTYSSPDEADSAMSARPHILDGNNVELKRAVAREDAGKP 94
Score = 63 (27.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGM-GSGR-PSRGDWRYR---PY 234
GGYG M YG G DF GYG SG P +G++ R PY
Sbjct: 243 GGYGDQMEGYGGGNGYNDFGS-GYGQQSSGYGPMKGNYSGRSNAPY 287
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 216 GYGMGSGRPSRG 227
G G G GRP G
Sbjct: 196 GGGRGMGRPQNG 207
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 164 (62.8 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVT 146
P S G E + +K+FVGR ++ TA++LR++F ++G + DV++PK R F FVT
Sbjct: 184 PNSKQGIDEPMR--SRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKP--FRAFAFVT 239
Query: 147 FAEEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG-GYGG 198
FA++ VA + I G V I +A P + + MM A FG G+GG
Sbjct: 240 FADDQVAAALCGEDLIIKGVSVHISNAEPKHN---NTRQMMERAGRFGNGFGG 289
Score = 44 (20.5 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 11 RGIGFITFASADSVENLMVDTHELGG 36
+G GF+ F ++ +M H + G
Sbjct: 151 KGFGFVRFGDWETQSKVMTQRHMIDG 176
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 164 (62.8 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 39/125 (31%), Positives = 67/125 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 300
Query: 221 SGRPS 225
+ + S
Sbjct: 301 NNQGS 305
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 195
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 160 KVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 164 (62.8 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 39/123 (31%), Positives = 67/123 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TAE+L+++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 300
Query: 221 SGR 223
+ +
Sbjct: 301 NNQ 303
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 137 (53.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 44/138 (31%), Positives = 66/138 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 124 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 183
Query: 158 RRSHEICGQQVAIDSATPLDD--AGPSQNFMMNAAETF---GGYGGPMRTYGRMYGSLDF 212
++ H I G + A + SQ + F G +GG +GR G
Sbjct: 184 QKYHTINGHNCEVKKALSKQEMQTASSQRGRGGGSGNFMGRGNFGGGGGNFGR--GGNFG 241
Query: 213 DDWGYGMGSGRP-SRGDW 229
GYG G G SRG +
Sbjct: 242 GRGGYGGGGGGGGSRGSF 259
Score = 122 (48.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 91
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
S R H++ G+ V A +D+
Sbjct: 92 SARPHKVDGRVVEPKRAVSREDS 114
Score = 83 (34.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 66 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 117
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 49 DDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG 94
D + G + G YG Y S Y G P Y +PG YG G
Sbjct: 263 DGYNGFGDVKGGNYGGGPGYGSRGG-YGGGGGPG-YGNPGGGYGGG 306
Score = 51 (23.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 193 FGGYGGPMRT-YGRMYGSLDFDD--------WGYGMGSGRPSRGDWRY 231
FG Y G ++ YG M G F GYG GSG G R+
Sbjct: 333 FGNYSGQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGSGGYGGRRF 380
Score = 48 (22.0 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 194 GGYGGPMRTYGRMYGSLDFDD---WGYGMGSGRPSRGDW 229
GG GG ++G G F D YG G G SRG +
Sbjct: 250 GGGGGSRGSFGGGDGYNGFGDVKGGNYGGGPGYGSRGGY 288
Score = 43 (20.2 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GYG P YG G D + G G G G Y +
Sbjct: 295 GYGNPGGGYGGGGGGYDGYNEGGNFGGGNYG-GSGNYNDF 333
Score = 42 (19.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
G YGG G YGS G G G G P G
Sbjct: 274 GNYGG-----GPGYGSRGGYGGGGGPGYGNPGGG 302
Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG Y +F YG GSG
Sbjct: 301 GGYGGGGGGYDGYNEGGNFGGGNYG-GSG 328
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 136 (52.9 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 45/140 (32%), Positives = 64/140 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D+ V
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 163
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG G
Sbjct: 164 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGGNFXRGGNFG 222
Query: 208 GSLDFDDWGYGMGSGRPSRG 227
G +G G G R S G
Sbjct: 223 GK---GXYGGGGGGXRSSYG 239
Score = 117 (46.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 71
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 72 CARPHKVDGRVVEPKRAVSREDS 94
Score = 83 (34.3 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 46 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97
Score = 59 (25.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG +YG Y D YG GSG SRG +
Sbjct: 229 GGGGGXRSSYGGGDGGYNGFGGDGGNYGGGSGSSSRGGY 267
Score = 47 (21.6 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 231
G +GG R+ G YG GYG G G G R+
Sbjct: 328 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 357
Score = 45 (20.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG G GYG G G
Sbjct: 265 GGYGGGGPGYGNQGG-------GYGGGGG 286
Score = 44 (20.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 193 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
+ G+GG YG GS +G G G G ++G
Sbjct: 245 YNGFGGDGGNYGGGSGSSSRGGYGGG-GPGYGNQG 278
Score = 38 (18.4 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GGYGG Y +F YG G G++
Sbjct: 279 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 314
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 148 (57.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 44/128 (34%), Positives = 61/128 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + T E LR YF +G I + +P K RGF FVTFA EE V +
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY---GGPMRTYGRMYGSLDFDD 214
R H+I + I A P + QN GG+ GG + + + Y + +
Sbjct: 175 NRYHQIGSGKCEIKVAQPKEVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNYYGQN 234
Query: 215 WGYGMGSG 222
+G G G+G
Sbjct: 235 YGGGYGNG 242
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 36/128 (28%), Positives = 59/128 (46%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGF 144
GS ++ + GK +F+G L + + +DL Y SRFG +LD + TG RGFGF
Sbjct: 17 GSKINASKNQEDDGK-MFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGF 75
Query: 145 VTFAEEVVADRVSRRS-HEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTY 203
V F + DRV + H++ G+ + A + P + + +R Y
Sbjct: 76 VLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSP-DITEEQLREY 134
Query: 204 GRMYGSLD 211
+YG ++
Sbjct: 135 FGVYGEIE 142
Score = 62 (26.9 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRA 44
RG GF+ F A+SV+ ++ T H+L G + RA
Sbjct: 71 RGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRA 105
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 125 (49.1 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAV 157
Query: 159 -RSHEICGQQVAIDSATPLDD 178
+ H I G +V + A P +D
Sbjct: 158 VKFHPIQGHRVEVKKAVPKED 178
Score = 79 (32.9 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G+TV + RA +ED RP
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 130 (50.8 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 39/125 (31%), Positives = 61/125 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF + D++
Sbjct: 90 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVF 149
Query: 159 RSHEI-----CGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFD 213
+ H C + A+ S + AGP + + F G GG G YG+
Sbjct: 150 QEHHAINRHNCEVKKAV-SKQEMQSAGPQRGHG-GGSGNFMGRGGNFGRGGPGYGN---Q 204
Query: 214 DWGYG 218
GYG
Sbjct: 205 GGGYG 209
Score = 75 (31.5 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRP 53
D ++ RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 33 DPQTEHSRGFGFVTYSCVEEVDAAMCAWPHKVDGRVVEPKRAVSREDSVKP 83
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 144 (55.7 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 53/150 (35%), Positives = 69/150 (46%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFA 148
GR E+ ++ KKIFVG L + +DL +FS+FG I +V K TG RGFGFV F
Sbjct: 90 GRPEALAKV-KKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFE 148
Query: 149 EEVVADR-VSRRSHEICGQQVAIDSATPLDDA------------GPSQNFMMNAAETFGG 195
+ AD+ V + H I G +V + A + G + N GG
Sbjct: 149 DNDSADKAVVLKFHMINGHKVEVKKALTKQEIQAAGGARGGRGRGGGRGMGRNQNGFGGG 208
Query: 196 YGGPMRTYGRMYGS-LDFDDWGYG--MGSG 222
GG YG YG +D GYG GSG
Sbjct: 209 RGGGYGGYGGGYGGGYGGNDGGYGGSYGSG 238
Score = 121 (47.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG---HRGFGFVTFAEEVVADR-VSR 158
K+FVG L + T + LR YF +FG + D V + R FGFVT++ AD ++
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 159 RSHEICGQQVAIDSATPLDDAG 180
R H + G+ V + A +DAG
Sbjct: 69 RPHVVDGKNVEVKRAVAREDAG 90
Score = 68 (29.0 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
DQ ++ R GF+T+++++ + M H + G V V RA +ED RP
Sbjct: 43 DQLQRS-RCFGFVTYSTSEEADAAMAARPHVVDGKNVEVKRAVAREDAGRP 92
Score = 62 (26.9 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG YG YGS + GYG G G
Sbjct: 222 GGYGGNDGGYGGSYGSGGYGG-GYGGGYG 249
Score = 58 (25.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMG---SGR-PSRGDWRY 231
GGYG M YG G D+ D+G G G SG P +G Y
Sbjct: 250 GGYGEQMGGYG---GGNDYSDFGSGYGQQSSGYGPMKGGNTY 288
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 126 (49.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/128 (30%), Positives = 59/128 (46%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIFVG + ++ LR YF ++G+I +++ + +G RGF FVT
Sbjct: 86 EDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVT 145
Query: 147 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDD---AGPSQNFMMNAAE--TFGGYGGPM 200
F + D+ V ++ H + G + A + A SQ + FG Y
Sbjct: 146 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNYNDFGNYNNQS 205
Query: 201 RTYGRMYG 208
+G M G
Sbjct: 206 SNFGPMKG 213
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 43/137 (31%), Positives = 64/137 (46%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRVS 157
K+F+ L E T E LR +F R+G + D V P RGFGFVT+ EEV A ++
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDA-AMN 66
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETFGGY------GGPMRTYGRMYGSL 210
R H++ G+ V A +D+ P + + + F G +R Y YG +
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGSIKEDTEEHHLREYFEQYGKI 124
Query: 211 DFDDWGYGMGSGRPSRG 227
+ + GSG+ RG
Sbjct: 125 EVIEIMTDRGSGQ-KRG 140
Score = 86 (35.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ + + V+ M H++ G V RA +ED RP
Sbjct: 40 RDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 91
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 163 (62.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/125 (31%), Positives = 68/125 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++L+++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 190 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 240
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 241 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG 299
Query: 221 SGRPS 225
+ + S
Sbjct: 300 NNQGS 304
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 100 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQV 158
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 159 KVMSQRHMIDGR 170
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 136 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 169
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 163 (62.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++L+++F+++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERGGRFGGNPGGFGNQGGFGNSRGGGGGLG 300
Query: 221 SGRPS 225
+ + S
Sbjct: 301 NNQGS 305
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDG 170
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 163 (62.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++L+++F+++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP--FRAFAFVTFADDQVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+CG+ + I + + +A P N E G +GG +G G + G G+G
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERGGRFGGNPGGFGNQGGFGNSRGGGGGLG 300
Query: 221 SGRPS 225
+ + S
Sbjct: 301 NNQGS 305
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDG 170
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 36/119 (30%), Positives = 55/119 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E E LR Y+ ++G++ D V P RGFGFV F+ D ++
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 211
R H I G+ VA P +++G + GG +R Y YG++D
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTID 139
Score = 120 (47.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHR-GFGFVTFAEEVVADR-VSRR 159
KK+FVG + ++ T LR YF R+G I + + +++G + FGFVTF + D+ V ++
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTAFGFVTFDDHDPVDKIVLQK 171
Query: 160 SHEICGQQVAIDSA 173
H I G ++ A
Sbjct: 172 YHTINGHHAQLEKA 185
Score = 82 (33.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D S+ RG GF+ F+S V+ M H + G V R P+E+ +P
Sbjct: 54 RDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKP 105
Score = 49 (22.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 189 AAETFGG---YGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
A +FGG YGG G Y +L G+G G G GD+
Sbjct: 256 AGGSFGGCPGYGGGYGDRGAGYSNLSS---GFGDGYGNYGGGDY 296
Score = 36 (17.7 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYG 218
GY +G YG+ D+G G
Sbjct: 276 GYSNLSSGFGDGYGNYGGGDYGEG 299
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 36/119 (30%), Positives = 55/119 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E E LR Y+ ++G++ D V P RGFGFV F+ D ++
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 211
R H I G+ VA P +++G + GG +R Y YG++D
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTID 139
Score = 120 (47.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHR-GFGFVTFAEEVVADR-VSRR 159
KK+FVG + ++ T LR YF R+G I + + +++G + FGFVTF + D+ V ++
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTAFGFVTFDDHDPVDKIVLQK 171
Query: 160 SHEICGQQVAIDSA 173
H I G ++ A
Sbjct: 172 YHTINGHHAQLEKA 185
Score = 82 (33.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D S+ RG GF+ F+S V+ M H + G V R P+E+ +P
Sbjct: 54 RDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKP 105
Score = 49 (22.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 189 AAETFGG---YGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
A +FGG YGG G Y +L G+G G G GD+
Sbjct: 256 AGGSFGGCPGYGGGYGDRGAGYSNLSS---GFGDGYGNYGGGDY 296
Score = 36 (17.7 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYG 218
GY +G YG+ D+G G
Sbjct: 276 GYSNLSSGFGDGYGNYGGGDYGEG 299
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 154 (59.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 50/151 (33%), Positives = 71/151 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R +SS+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 105 RSDSSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 162
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQNFMMNAAETFGGYGG-PM 200
E D+ V+ H+I G++V + A P D G SQ A G+ G P
Sbjct: 163 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 222
Query: 201 RTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
T+ + YG W G +G G P G
Sbjct: 223 PTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 251
Score = 122 (48.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQQVAIDSATP 175
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 154 (59.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 50/151 (33%), Positives = 71/151 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R +SS+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 106 RSDSSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQNFMMNAAETFGGYGG-PM 200
E D+ V+ H+I G++V + A P D G SQ A G+ G P
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 223
Query: 201 RTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
T+ + YG W G +G G P G
Sbjct: 224 PTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQQVAIDSATP 175
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 154 (59.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 50/151 (33%), Positives = 71/151 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R +SS+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 106 RSDSSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQNFMMNAAETFGGYGG-PM 200
E D+ V+ H+I G++V + A P D G SQ A G+ G P
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 223
Query: 201 RTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
T+ + YG W G +G G P G
Sbjct: 224 PTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQQVAIDSATP 175
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 144 (55.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +F ++ D + K T HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 68 (29.0 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 126 (49.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 10 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 68
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ R H++ G+ V A ++D+
Sbjct: 69 NARPHKVDGRVVEPKRAVSIEDS 91
Score = 120 (47.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 38/127 (29%), Positives = 61/127 (48%)
Query: 95 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKRTGH-RGFGFVTF 147
E SQR G KIFVG + ++ LR YF ++G+ ++++ + +G RGF FVTF
Sbjct: 89 EDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTF 148
Query: 148 AEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM 206
+ D+ V ++ H + G + A PS+ M +A+ + G G G
Sbjct: 149 DDRDSVDKIVIQKYHTVNGHNCEVRKA-------PSKQEMASASSSQRGRSGS----GNC 197
Query: 207 YGSLDFD 213
Y +D D
Sbjct: 198 YNGIDND 204
Score = 86 (35.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ M H++ G V RA ED RP
Sbjct: 43 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSIEDSQRP 94
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 140 (54.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 42/138 (30%), Positives = 63/138 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
+KIFVG + ++ +LR YF ++G+I ++V +++G RGF FVTF D+V +
Sbjct: 128 EKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQ 187
Query: 159 RSHEICGQQVAI------DSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 212
+ H + G + + + G S NFM FGG GG G GS
Sbjct: 188 KYHTVNGHNCEVKEQEMPSAGSQRGHGGGSGNFMGRGGN-FGGRGGYGGGGGGSRGSYGG 246
Query: 213 DDWGYGMGSGRPSRGDWR 230
D G+ G G R
Sbjct: 247 GDGGFNGFGGDAGHGGRR 264
Score = 109 (43.4 bits), Expect = 0.00078, P = 0.00078
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T LR +F ++G + D V P+R RGF FVT++ EEV A
Sbjct: 37 RKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMC 96
Query: 157 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETFGGYGGP-----MRTYGRMYGSL 210
+R H++ G V A +D+ P + M+ GG +R Y YG +
Sbjct: 97 AR-PHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFV-GGIKEDTEEYNLRDYFEKYGKI 154
Query: 211 D 211
+
Sbjct: 155 E 155
Score = 68 (29.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D K RG F+T++ + V +M H++ G V RA +ED P
Sbjct: 70 RDPQRKCSRGFSFVTYSCVEEVGAVMCARPHKVVGCVVEPKRAVSREDSIIP 121
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 126 (49.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 44/137 (32%), Positives = 65/137 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGHRGFGFVTFAEEVVADR-VSR 158
K+I VG + ++ LR YF +G+I +++ + +G + F FVTF + D+ V +
Sbjct: 96 KEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGKKEFAFVTFDDHDSVDKIVIQ 155
Query: 159 RSHEICG---QQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYG-RMYGSLDFDD 214
+ H + G + VA+ S + A SQ + FGG GGP G R YGS D
Sbjct: 156 KYHTVNGHNCETVAL-SKQEMASASSSQRGRSGSGN-FGG-GGPGYCEGSRGYGSGGQGD 212
Query: 215 WGYGMGSGRPSRGDWRY 231
G G G D RY
Sbjct: 213 GNQGSGYGGSGSYD-RY 228
Score = 84 (34.6 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ + + V+ M H++ GS V RA +ED P
Sbjct: 38 RDPNTKRSRGFGFVTYTTVEEVDAAMNARPHKVDGSFVEPKRAVSREDSQSP 89
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 138 (53.6 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 34/78 (43%), Positives = 42/78 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 158 RRSHEICGQQVAIDSATP 175
++ H I G + I A P
Sbjct: 214 KKFHTISGSKCEIKVAQP 231
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 69 (29.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 151 (58.2 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 51/153 (33%), Positives = 73/153 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R ++S+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 96 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 198
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 211
Query: 199 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
P T+ + YG W G +G G P G
Sbjct: 212 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 242
Score = 120 (47.3 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVVADRVSR 158
K+FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V ++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 159 RSHEICGQQVAIDSATP 175
R H + G+ + TP
Sbjct: 61 RPHTLDGRNIDPKPCTP 77
Score = 57 (25.1 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 33 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 78
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 141 (54.7 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 44/139 (31%), Positives = 63/139 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EA + +R YF FG I + +P K RGF F+TF EE ++
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM-RTYGRMYGSLDFDDWG 216
++ H + G + I A P + Q +FGG GG + G+ + ++ W
Sbjct: 208 KKFHNVSGSKCEIKIAQPKE---VYQQQYGGRGGSFGGRGGRGGKGQGQNWNQ-GYNYWN 263
Query: 217 YGMGS-GRPSRGDWRYRPY 234
G G+ G G Y Y
Sbjct: 264 QGYGNQGYGGYGQQGYGGY 282
Score = 119 (46.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV- 156
G K+FVG L + + +DL+ YF++FG + D + + TG RGFGF+ F + D+V
Sbjct: 63 GVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVL 122
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 211
+ H + G+ + A + P + + G +R Y +G ++
Sbjct: 123 EHKEHRLDGRLIDPKKAMAMKK-DPIKKIFVGGLNPEAGED-QIREYFETFGEIE 175
Score = 67 (28.6 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A+SV+ ++ H L G + +A + D P+ ++ GG
Sbjct: 98 DPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKD--PIKKIFVGG 154
>FB|FBgn0036496 [details] [associations]
symbol:CG7804 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
Length = 318
Score = 166 (63.5 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 62 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+G+Y+ + + R++ G P S RG +Q GK +FVGR ++ A+DLR
Sbjct: 155 FGSYDVQMHVLSKRHSIDGRWCEVKVPAS---RGMGNQEPGK-VFVGRCTEDIEADDLRE 210
Query: 121 YFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAG 180
YFS+FG ++DV++PK R F FVTF + V V H I G V + +A +
Sbjct: 211 YFSKFGEVIDVFIPKP--FRAFSFVTFLDPYVPRVVCGEKHIIKGVSVHVSTADKKNVQN 268
Query: 181 PSQNFMMN 188
+Q F N
Sbjct: 269 KNQLFQTN 276
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 35/123 (28%), Positives = 57/123 (46%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAE 149
R E+ R I +G L T +DLR YF +G ++ + K R+GH +GFGFV F
Sbjct: 99 RTEAHLRCFDLIVLG-LSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGS 157
Query: 150 EVVADRVSRRSHEICGQ--QVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
V V + H I G+ +V + ++ + + P + F+ E +R Y +
Sbjct: 158 YDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCTEDIEA--DDLREYFSKF 215
Query: 208 GSL 210
G +
Sbjct: 216 GEV 218
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 151 (58.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 51/153 (33%), Positives = 73/153 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R ++S+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 106 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 198
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 221
Query: 199 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
P T+ + YG W G +G G P G
Sbjct: 222 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQQVAIDSATP 175
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 129 (50.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGHRGFGFVTF 147
E SQR G KKIFVG + ++ LR YF ++G+I +++ + +G +GF FVTF
Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKGFAFVTF 151
Query: 148 AEEVVADR-VSRRSHEICGQQVAIDSATPLDD---AGPSQNFMMNAAETFGGYGG 198
+ D+ V ++ H + G + A + A +Q + + GG GG
Sbjct: 152 DDHDSVDKIVIQKYHPVNGHSCEVRKALSKQEMASASSTQRDLSGSGNFGGGRGG 206
Score = 82 (33.9 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG+GF+ +A+ + V+ M + G V RA +ED RP
Sbjct: 47 RDPNTKRSRGVGFLMYATVEEVDAAMNARPHVDGRVVEPKRAVSREDSQRP 97
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 151 (58.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 51/153 (33%), Positives = 73/153 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R ++S+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 106 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 198
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 221
Query: 199 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
P T+ + YG W G +G G P G
Sbjct: 222 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQQVAIDSATP 175
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 151 (58.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 51/153 (33%), Positives = 73/153 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R ++S+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 106 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 198
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 221
Query: 199 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
P T+ + YG W G +G G P G
Sbjct: 222 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQQVAIDSATP 175
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 154 (59.3 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TAE+L+++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 205
+CG+ + I + + +A P N E G +GG +GR
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGKS-PFGR 284
Score = 124 (48.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 44 (20.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 149 (57.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R E+S+ KIFVG +P +L+ YF+RFG + +V Y ++ RGFGF+TF +
Sbjct: 107 RTENSR--SNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFED 164
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA----GP--SQNFMMNAAE-TFGGYGG-PM 200
E D+ V+ H+I G++V + A P D GP S + A + T G+ G P
Sbjct: 165 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPP 224
Query: 201 RTY 203
+T+
Sbjct: 225 QTW 227
Score = 123 (48.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-E 150
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F +
Sbjct: 4 QGGDEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 151 VVADRVSRRSHEICGQQVAIDSATP 175
V ++ R H + G+ + TP
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTP 87
Score = 57 (25.1 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Score = 44 (20.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 183 QNFMMNAAETFGGYGGP 199
Q M +T GGYG P
Sbjct: 233 QGMWMPTGQTIGGYGQP 249
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 136 (52.9 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 43/132 (32%), Positives = 64/132 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL ++FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 119 KKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 178
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ H I G +V + A P +D +A + GG GG G G+ D +
Sbjct: 179 VKFHPIQGHRVEVKKAVPKEDIQAGGGG--SARPSRGGRGGGRGRGGGGSGNRDHNGLSK 236
Query: 218 GMGSGRPSRGDW 229
G G G S G +
Sbjct: 237 G-GGGYNSYGGY 247
Score = 104 (41.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 92 GRG-ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTF 147
G G E+SQ K+F+G L + T LR +F+ +G + D V P+ R FGFVT+
Sbjct: 19 GTGMENSQLC--KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTY 76
Query: 148 AEEVVADRVSRRS-HEICGQQVAIDSATPLDDA 179
+ AD S H + G V + A +D+
Sbjct: 77 SAVEEADAAMAASPHAVDGNSVELKRAVSREDS 109
Score = 72 (30.4 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+K R GF+T+++ + + M + H + G++V + RA +ED +P
Sbjct: 65 TKRSRCFGFVTYSAVEEADAAMAASPHAVDGNSVELKRAVSREDSAKP 112
Score = 46 (21.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 192 TFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
++GGYGG G YG +G G G G G
Sbjct: 243 SYGGYGGGG---GGGYGGYGGGSYGGGGGGGDYGNG 275
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 133 (51.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 40/127 (31%), Positives = 64/127 (50%)
Query: 48 EDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS--QRIGKKIF 105
EDD G+ G N A + A GA G+ G+ ++S + K+F
Sbjct: 45 EDDLNGAGQYDQG-----NGDAQAGAQGNA-GADGTAGDDGADGGQIDASKGEEDAGKMF 98
Query: 106 VGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SRRSH 161
VG L + + +DL+ YFS+FG + D + + TG RGFGF+ F E D+V +++ H
Sbjct: 99 VGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEH 158
Query: 162 EICGQQV 168
+ G+Q+
Sbjct: 159 RLDGRQI 165
Score = 132 (51.5 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L E T E +R YF FG I + +P K RGF F+TF EE ++
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 158 RRSHEICGQQVAI--DSATPLDDAGPSQNFMMNAAETFGG-YGGPMRTYGR 205
++ H + G + + + A P + + + +GG +GG R GR
Sbjct: 239 KKYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQ---QQYGGRFGGGGRGRGR 286
Score = 56 (24.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F V+ ++ H L G + +A + + PV ++ GG
Sbjct: 129 DPNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKE--PVKKIFVGG 185
Score = 53 (23.7 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 193 FGGYGGPMR-TY-GRMYGSLDFDDWGYGMGS-GR-PSRGDWR--YRPY 234
+GGYGG Y G YG D+ G S G+ P RG + Y+PY
Sbjct: 319 YGGYGGYGNYDYSGGYYGGYGGYDYNQGNTSYGKTPRRGAHQSSYKPY 366
Score = 53 (23.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 193 FGGYGGPMRTYGRM--YGSLDFDDWGYGMGSG 222
+GGYGG + YG YG+ D+ YG G G
Sbjct: 310 YGGYGG-QQGYGGYGGYGNYDYSGGYYG-GYG 339
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 136 (52.9 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 158 RRSHEICGQQVAIDSATP 175
++ H + G + I A P
Sbjct: 214 KKFHTVSGSKCEIKVAQP 231
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 68 (29.0 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 137 (53.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYV-PKRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF +FG I +++ + PK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 158 RRSHEICGQQVAIDSATP 175
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
Score = 67 (28.6 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 137 (53.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYV-PKRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF +FG I +++ + PK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 158 RRSHEICGQQVAIDSATP 175
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
Score = 67 (28.6 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 136 (52.9 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 158 RRSHEICGQQVAIDSATP 175
++ H + G + I A P
Sbjct: 214 KKFHTVSGSKCEIKVAQP 231
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 68 (29.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 123 (48.4 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 37/114 (32%), Positives = 56/114 (49%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR YF ++G+I ++V ++G RGF FVTF + D+ V
Sbjct: 99 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVD 158
Query: 158 RRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG 208
++ H I G + A + AG SQ + F G GG G +G
Sbjct: 159 QKYHIINGHNCEVKKALSKQEMQSAG-SQRGRGGGSGNFMGRGGNFGGGGGNFG 211
Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+ +G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A V
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AV 66
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 67 CARPHKVDGRVVEPKRAVSREDS 89
Score = 79 (32.9 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ + H++ G V RA +ED +P
Sbjct: 41 RDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVVEPKRAVSREDSVKP 92
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 157 (60.3 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTF-AEEVVADRVSR 158
KIFVG L E + E+++ YF +FG I++V +P +++ +GF F+TF +E+VV D +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 159 RSHEICGQQVAIDSATPLDD-------AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 211
+I G++V + ATP + G + M +GG GG + GS
Sbjct: 197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQ-GSYG 255
Query: 212 FDDWGYGMGSGRPSRGDW 229
GYG G G GD+
Sbjct: 256 GYGGGYG-GYGAGGYGDY 272
Score = 108 (43.1 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 96 SSQRIG-KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEV 151
S QR +K+FVG L E T ++LR +F ++G I ++V +TG RGF F+ F
Sbjct: 49 SGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108
Query: 152 VADRVSRRSHEI 163
D+VS I
Sbjct: 109 AIDKVSAADEHI 120
Score = 57 (25.1 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 193 FGGYG-GPMRTY--GRMYGSLDFDDWGYGMGSGRPSRG 227
+GGYG G Y G Y D+ GYG G G G
Sbjct: 261 YGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNG 298
Score = 42 (19.8 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 11 RGIGFITFASADSVENLMV-DTHELGGSTV 39
RG FI F + ++++ + D H + V
Sbjct: 97 RGFAFIVFTNTEAIDKVSAADEHIINSKKV 126
Score = 38 (18.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
GYGG G YG + G G G R G
Sbjct: 289 GYGGGFE--GNGYGGGGGGNMGGGRGGPRGGGG 319
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 137 (53.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYV-PKRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF +FG I +++ + PK RGF F+TF EE +V
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 158 RRSHEICGQQVAIDSATP 175
++ H + G + I A P
Sbjct: 232 KKFHTVSGSKCEIKVAQP 249
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + + TG RGFGF+ F + ++V +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 149 KEHRLDGRVI 158
Score = 67 (28.6 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + RG GFI F + SVE ++ H L G + +A + D PV ++ GG
Sbjct: 122 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 178
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 138 (53.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 34/78 (43%), Positives = 42/78 (53%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF FG I + +P K RGF F+TF EE +V
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 158 RRSHEICGQQVAIDSATP 175
++ H I G + I A P
Sbjct: 208 KKFHTISGSKCEIKVAQP 225
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 36/129 (27%), Positives = 59/129 (45%)
Query: 44 ATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKK 103
AT + P G S G G A A AA A G ++ + GK
Sbjct: 9 ATENGHEAAPEGE-SPAGAGT-GAAAGAGGGSAAPPAGNQNGAEGDQINASKNEEDAGK- 65
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAEEVVADRV-SRR 159
+FVG L + + +DL+ YF++FG ++D VP +GFGF+ F + ++V ++
Sbjct: 66 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQK 125
Query: 160 SHEICGQQV 168
H + G+ +
Sbjct: 126 EHRLDGRVI 134
Score = 63 (27.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+G GFI F A SVE ++ H L G + +A + D PV ++ GG
Sbjct: 105 KGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 154
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 123 (48.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 40/131 (30%), Positives = 63/131 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG + +E T + LR YF +G+I +++ + +G RGF FVTF + D++ +
Sbjct: 104 KKIFVGGI-KENTEDHLRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQ 161
Query: 159 RSHEICGQQVAIDSATPLDD-AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ H + G + A + A S + ++ + FGG G G GS G
Sbjct: 162 KYHTVNGHNCEVRKALSKQEMASASSSQSLSGSGNFGGGCGGNSGRGGFSGSRGGGGNG- 220
Query: 218 GMGSGRPSRGD 228
G G G G+
Sbjct: 221 GSGDGYSGFGN 231
Score = 82 (33.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED
Sbjct: 46 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 93
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 118 (46.6 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 43/142 (30%), Positives = 68/142 (47%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIF G + ++ LR YF ++G+I +++ + +G RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 147 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 205
F + D+ V ++ H + G + A + S + G +GG R G
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQEMA-SASCSQRGQSGSGNFGG-FRGCG- 209
Query: 206 MYGSLDFDDWGYGMGSGRPSRG 227
+G D ++G+G G+ R RG
Sbjct: 210 -FGGND--NFGHG-GNFR-GRG 226
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00093
Identities = 41/137 (29%), Positives = 63/137 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTF-AEEVVADRVS 157
+K+F+G E T E LR +F + G + D V P RGFGFVT+ A E V +
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H++ G+ V + +D+ P + + + F GG +R Y YG +
Sbjct: 74 ARPHKVDGRVVEPKRTSSKEDSQRPGAH--LTVKKIFAGGIKEDTEEHHLRDYFEQYGKI 131
Query: 211 DFDDWGYGMGSGRPSRG 227
+ + GSG+ RG
Sbjct: 132 EVIEIMTDRGSGK-KRG 147
Score = 87 (35.7 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+ + + V+ M H++ G V R + KED RP
Sbjct: 47 RDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRP 98
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 122 (48.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 43/130 (33%), Positives = 61/130 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH---RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ LR YF ++G+I + + G RGF FVTF + D+ V+
Sbjct: 55 KKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVT 114
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMM---NAAETFGGYGGPMRTYGRMYGSLDFD 213
++ H + G + PL S +F N + T GY G R YG G D
Sbjct: 115 QKYHTVNGHHKC-EVRKPLSKQEMASASFSQRGRNGSRT--GYPGGSRGYGS--GGQDCG 169
Query: 214 DWGYGMG-SG 222
+ G G G SG
Sbjct: 170 NQGSGYGGSG 179
Score = 77 (32.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+K RG GF+T S + V+ M H++ G V RA +ED RP
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRP 48
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 133 (51.9 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 39/133 (29%), Positives = 64/133 (48%)
Query: 81 PTLYDHPGSF--YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKR 136
P + H S + ++QR K+F+G L + T +DL+ YFS+FG ++D + +
Sbjct: 7 PPVVGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 66
Query: 137 TGH-RGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA---- 190
TG RGFGFV F E D+V ++ H++ G+ + A + P + +
Sbjct: 67 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 126
Query: 191 ------ETFGGYG 197
E FGG+G
Sbjct: 127 PEEKIREYFGGFG 139
Score = 130 (50.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 175 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 230
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 231 WNQGYGNYGYNSQGYGGYGGY 251
Score = 67 (28.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 71 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 121
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 149 (57.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++LR++F ++G + DV++PK R F FVTFA++ VA +
Sbjct: 197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKP--FRAFAFVTFADDQVAQSLCGEDL 254
Query: 162 EICGQQVAIDSATP 175
I G V I +A P
Sbjct: 255 IIKGTSVHISNAEP 268
Score = 44 (20.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
+D S +G GF+ F ++ +M H + G
Sbjct: 138 RDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDG 171
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 133 (51.9 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 42/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 221 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 276
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G GS G S+G Y Y
Sbjct: 277 WNQGYGSYGYNSQGYGGYGGY 297
Score = 123 (48.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E D+V +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
+ H++ G+ + A + P + + E FGG+G
Sbjct: 137 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 185
Score = 67 (28.6 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 117 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 167
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 148 (57.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQ------- 241
Query: 162 EICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPM--RTYGR 205
+CG+ + I + + +A P N E G +G + YGR
Sbjct: 242 SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGVHLISNVYGR 287
Score = 127 (49.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 195
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 160 KVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
Score = 44 (20.5 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 130 (50.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSR 158
+K+F+G L T + L+ +F ++G I+DV V PK RGFGF+T+++ + D
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 159 -RSHEICGQQVAIDSATP 175
R H+I G+ V A P
Sbjct: 84 ARPHKIDGRTVEPKRAVP 101
Score = 121 (47.7 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 44/134 (32%), Positives = 61/134 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVS- 157
KK+FVG L + E LR YF FG+I+ V + K TG RGF F+ F + D++
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIIL 174
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+++H I + + + A D M+ GG GGP R GR G D G
Sbjct: 175 QKTHSIKNKTLDVKKAIAKQD--------MDRQGGGGGRGGP-RAGGRG-GQGDRGQGGG 224
Query: 218 GMGSGRPSRG--DW 229
G G G +W
Sbjct: 225 GWGGQNRQNGGGNW 238
Score = 84 (34.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49
KD +K RG GFIT++ + ++N H++ G TV RA P+++
Sbjct: 57 KDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQE 104
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 153 (58.9 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 48/144 (33%), Positives = 68/144 (47%)
Query: 83 LYDHPGSFYGRGESSQRI----GKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPK 135
L P + GR + R KIFVG +P +LR YF +FG + +V Y +
Sbjct: 68 LASRPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE 127
Query: 136 RTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---N 184
+ RGFGF+TF +E D+ V+ H+I G++V + A P D G SQ
Sbjct: 128 KQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSR 187
Query: 185 FMMNAAETFGGYGGPMRTYGRMYG 208
+ NAA G G P T+ + YG
Sbjct: 188 VVPNAAN--GWAGQPPPTWQQGYG 209
Score = 114 (45.2 bits), Expect = 0.00010, P = 0.00010
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGH--RGFGFVTFAE-EVV 152
+ IGK +FVG L T E LR YFS++G ++D + K +T + RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 153 ADRVSRRSHEICGQ 166
++ R H + G+
Sbjct: 65 GTVLASRPHTLDGR 78
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 134 (52.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 44/146 (30%), Positives = 67/146 (45%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGH-RGFGFVTFAEEVVADR 155
+ KKIF+G + ++ +LR YF ++G+I + + +++G RGF FVTF + D+
Sbjct: 100 LAKKIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDK 159
Query: 156 -VSRRSHEICGQQVAIDSATPLDDAGPS---QNFMMNAAETFGGYGGPMRTYGRMYG-SL 210
V ++ H I + A P PS Q + F G GG R +G
Sbjct: 160 IVVQKCHTINRHNCDVKKA-PSKQEMPSVRSQRCRGGRSSNFMGRGGNFGHGRRNFGHGG 218
Query: 211 DFDDWGYGMGSGRPSRG--DWRYRPY 234
+F G G G R S G D RY +
Sbjct: 219 NFGGRGGGSGGSRGSYGGGDGRYNGF 244
Score = 59 (25.8 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP-KEDDFRPV 54
D +K R GF+T++ V+ M H++ G VV+ P +ED +PV
Sbjct: 46 DPQTKRSRVFGFVTYSCVKEVDAAMCARPHKVDGC--VVEPKRPFREDSVKPV 96
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 35/83 (42%), Positives = 46/83 (55%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH----RGFGFVTFAEEVVADR 155
I KIFVG L + ++ E L+ YFS FG + + V K T RGFGFVTF + V D
Sbjct: 104 ISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDE 163
Query: 156 VSRRSHEICGQQVAIDSATPLDD 178
V +H I G+ V I A P ++
Sbjct: 164 VILINHSIEGKNVEIRRAIPKEE 186
Score = 124 (48.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
+K+FVG LP+ T++D YFS FG I + + ++ G +GFGF+ F +E V + + +
Sbjct: 194 QKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKNGTIKGFGFICFKDESVNEIILNE 253
Query: 159 RSHEICGQQVAI 170
+ H I G++V I
Sbjct: 254 QQHIILGKRVDI 265
Score = 87 (35.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
++ SK+ RG GF+TF ++ +++ H + G V + RA PKE+
Sbjct: 142 EKASKS-RGFGFVTFVDPSVIDEVILINHSIEGKNVEIRRAIPKEE 186
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 126 (49.4 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 39/134 (29%), Positives = 64/134 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KK+FVG + ++ LR YF ++G+I +++ +++G RGFGFVTF + D+ V
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVL 159
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-----GGYGGPMRTYGRMYGSLDF 212
++ H I G + A + + Q + F +GG +GR G+ F
Sbjct: 160 QKYHAINGHHAEVRKALSIWEMQQVQGSRSRKRDPFDFSVSSSWGG---NFGRGPGT-KF 215
Query: 213 DDWGYGMGSGRPSR 226
G G+G SR
Sbjct: 216 RGEADGYGNGPRSR 229
Score = 111 (44.1 bits), Expect = 0.00056, P = 0.00056
Identities = 40/136 (29%), Positives = 62/136 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH---RGFGFVTFAEEVVADR-VS 157
+K+F+G L + T E LR+Y+ ++G + D V + RG GFVTF+ D ++
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 211
R H I G+ + A P + +G + + F GG +R Y YG +D
Sbjct: 69 ARPHSIDGRVLEPRRAIPREASG-QRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKID 127
Query: 212 FDDWGYGMGSGRPSRG 227
+ SGR RG
Sbjct: 128 AIEIITDRQSGR-KRG 142
Score = 75 (31.5 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+D S+ RG GF+TF+S V+ M H + G + RA P+E
Sbjct: 42 RDFASQRSRGCGFVTFSSVTEVDAAMAARPHSIDGRVLEPRRAIPRE 88
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 133 (51.9 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 42/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 240 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 295
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G GS G S+G Y Y
Sbjct: 296 WNQGYGSYGYNSQGYGGYGGY 316
Score = 127 (49.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 67 (28.6 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 136 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 186
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 133 (51.9 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 42/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 240 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 295
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G GS G S+G Y Y
Sbjct: 296 WNQGYGSYGYNSQGYGGYGGY 316
Score = 127 (49.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 67 (28.6 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 136 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 186
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 128 (50.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 43/144 (29%), Positives = 64/144 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 158 RRSHEI----CGQQVAI--DSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 211
++ H + C +VA+ + G F+ A G GGP + + + Y +
Sbjct: 144 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRAR---GRGGGPSQNWNQGYSNY- 199
Query: 212 FDDWGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 200 ---WNQGYGNYGYNSQGYGGYGGY 220
Score = 119 (46.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SRR 159
+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E D+V ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 160 SHEICGQQV 168
H++ G+ +
Sbjct: 61 EHKLNGKVI 69
Score = 67 (28.6 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 40 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 90
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 128 (50.1 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 43/144 (29%), Positives = 64/144 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 158 RRSHEI----CGQQVAI--DSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 211
++ H + C +VA+ + G F+ A G GGP + + + Y +
Sbjct: 145 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRAR---GRGGGPSQNWNQGYSNY- 200
Query: 212 FDDWGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 201 ---WNQGYGNYGYNSQGYGGYGGY 221
Score = 124 (48.7 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E D+V +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 159 RSHEICGQQV 168
+ H++ G+ +
Sbjct: 61 KEHKLNGKVI 70
Score = 67 (28.6 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 41 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 91
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/152 (28%), Positives = 73/152 (48%)
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLR 119
GG GA A +AA+ G+ + G+ ++ + GK +F+G L + T +DL+
Sbjct: 7 GGDGAAAAATAAASGGTEGGSA---ESEGAKIDASKNEEDEGK-MFIGGLSWDTTKKDLK 62
Query: 120 RYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATP 175
YFS+FG ++D + + TG RGFGFV F E D+V ++ H++ G+ + A
Sbjct: 63 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 122
Query: 176 LDDAGPSQNFMMNAA----------ETFGGYG 197
+ P + + E FGG+G
Sbjct: 123 MKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 154
Score = 130 (50.8 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 190 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 245
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 246 WNQGYGNYGYNSQGYGGYGGY 266
Score = 67 (28.6 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 86 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 136
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 129 (50.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 42/141 (29%), Positives = 66/141 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF +G + + +P K RGF F+TF EE ++
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-G-GYGGPMRTYGRMYGSLDFDDW 215
++ H I + + A + Q + T G G GGP + + + YG+ + +
Sbjct: 199 KKYHNIGLSKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRGRGGPNQNWNQGYGN--YWNQ 256
Query: 216 GYG-MGS-GRPSRGDWRYRPY 234
GYG G+ G ++G Y Y
Sbjct: 257 GYGNYGNYGYNNQGYGGYGGY 277
Score = 121 (47.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAE-EVVADRVSR 158
K+FVG L + T +DL+ YF++FG ++D + + TG RGFGFV F E E V +++
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 159 RSHEICGQQV 168
+ H++ G+ +
Sbjct: 115 KEHKLNGKVI 124
Score = 69 (29.3 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F A+SVE ++ H+L G + +A + PV ++ GG
Sbjct: 95 RGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTK-EPVKKIFVGG 145
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 157 (60.3 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 45/139 (32%), Positives = 69/139 (49%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT-GHRGFGFVTFAEEVV 152
+ R KK+FVG LP + + +DLR +F +FG++ D+ P K+T R F F+ F EE
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEES 163
Query: 153 ADRVSRRSHEICG-QQVAIDSATPLDDAGP-SQNFMMNAAETFGGYGGPMRTYGRMYGSL 210
AD+ S ++ + G ++ + A P P +Q M +GG GG + G G
Sbjct: 164 ADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMPGGRGMYGGRGGNNNS-GWYAGWG 222
Query: 211 DFDDWGYGMGSGRPSRGDW 229
YG +G + GDW
Sbjct: 223 QIGAMPYG-ATGA-AWGDW 239
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 136 (52.9 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFAEEVVADRVSRR 159
K+FVG + +E + E L++YFSR+G +L+ V K TG RGFGFV FA + + R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 160 SHEICGQQVAIDSA 173
+H I G+ V + A
Sbjct: 67 THFILGKPVDVRKA 80
Score = 134 (52.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFAEEVVADRVSR 158
KKIFVG L T E+ + YF RFGR DV V T RGFGFVT+ E + V +
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 159 RS-HEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY 196
+ HE+ ++V + A P + + +N ++ +
Sbjct: 180 SNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSF 218
Score = 64 (27.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
K++ + RG GF+ FA+ V + DTH + G V V +A K +
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHE 85
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 124 (48.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/153 (30%), Positives = 67/153 (43%)
Query: 87 PGSFYGRGESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKRTGH 139
P F R E SQR KKIFVG + ++ E+ YF ++G+ +++V + +G
Sbjct: 86 PKRFVSR-EDSQRPAAYLTVKKIFVGGIKEDT--EEHEDYFEQYGKFEVIEVMTDQGSGK 142
Query: 140 -RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG 197
RGF FVTF D+ V ++ H + G + A L S +F G +G
Sbjct: 143 KRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKAL-LKQEMASASFSQRGQSGSGNFG 201
Query: 198 GPMRTYGRMYGSLDFDD---WGYGMGSGRPSRG 227
G G G+ +FD W G G R G
Sbjct: 202 GGRG--GGFGGNDNFDHDNHWSRGFGGSRSGGG 232
Score = 74 (31.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
+D +K RG GF+ FA+ + V+ M +++ G + R +ED RP ++
Sbjct: 47 RDPNTKRSRGFGFVMFATVEEVDAAMNARPNKVNGRVLEPKRFVSREDSQRPAAYLT 103
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +FG++ D + K T HRGFGFVTF E + ++V
Sbjct: 41 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 100
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 101 IHFHEINNKMVECKKAQPKEVMSPT 125
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 122 (48.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 37/128 (28%), Positives = 60/128 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KK+FVG + ++ LR YF ++G+I +++ ++G RGFGF+TF + D+ V
Sbjct: 112 KKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVL 171
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG-GY-GGPMRTYGRMYGSLDFDDW 215
+++H I G + + A + Q+ G GY G G G +F
Sbjct: 172 QKNHTINGHRAEVRKALSRQERQEGQHLRSRGEGDVGLGYFHGVGGNVGAGRGR-NFRGG 230
Query: 216 GYGMGSGR 223
G G GR
Sbjct: 231 AGGYGRGR 238
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 38/129 (29%), Positives = 57/129 (44%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAE 149
RG+ K+F+G L E T E L Y+ ++G + D + P R FGF+TF+
Sbjct: 12 RGKRENEQFCKLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSS 71
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGPM-----RT 202
D ++ R H I G+ V A P +D G ++ + F GG M R
Sbjct: 72 MAELDAAMAARPHFIDGKMVMPKRAVPREDHG-KLGALITVKKLFVGGITEDMKEHHLRD 130
Query: 203 YGRMYGSLD 211
Y YG ++
Sbjct: 131 YFEKYGKIN 139
Score = 86 (35.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 34/121 (28%), Positives = 51/121 (42%)
Query: 129 LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFM 186
+++ ++G RGFGF+TF + D+ V +++H I G + + A + Q+
Sbjct: 141 IEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKALSRQERQEGQHLR 200
Query: 187 MNAAETFG-GY----GGPMRT-YGRM-------YG-SLDFDDWGYGMGSGRPSRGDWRYR 232
G GY GG + GR YG F D +G G GR G W R
Sbjct: 201 SRGEGDVGLGYFHGVGGNVGAGRGRNFRGGAGGYGRGRQFGDGSHGYG-GRAGGGSWGVR 259
Query: 233 P 233
P
Sbjct: 260 P 260
Score = 77 (32.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D S+ R GFITF+S ++ M H + G V+ RA P+ED
Sbjct: 54 RDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVMPKRAVPRED 101
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 130 (50.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 130 (50.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTF 147
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 148 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 196
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 197 G 197
G
Sbjct: 206 G 206
Score = 67 (28.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 130 (50.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 130 (50.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTF 147
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 148 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 196
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 197 G 197
G
Sbjct: 206 G 206
Score = 67 (28.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 130 (50.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 130 (50.8 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTF 147
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 148 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 196
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 197 G 197
G
Sbjct: 206 G 206
Score = 67 (28.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 130 (50.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 129 (50.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E
Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 67 (28.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 140 (54.3 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+KIFVG L T + +R ++S+FG I D+ V P RGFGFVTF+ + D +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQN 184
+R H I G+ V A P DD S++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 115 (45.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKRTGH-RGFGFVTFAE 149
R ES+ K+++V + ++ T + L YF+++G + ++ + K T RGFGFVTF +
Sbjct: 106 RSESNVST-KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG 208
D+ V ++SH + G + + D+ +Q M ET GG + G G
Sbjct: 165 HDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQ--MNRDRETRGGRSRDGQRGGYNGG 222
Query: 209 SLDFDDWGYGMGSGRP 224
WG G P
Sbjct: 223 GGGGGGWGGPAQRGGP 238
Score = 85 (35.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMS 58
+D +K RG GF+TF+ V+ M H + G TV RA P++D R +S
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVS 112
Score = 49 (22.3 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GG+GGP + +G G G G +G W
Sbjct: 292 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGW 327
Score = 46 (21.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGR 223
GG+GG + G G W + G R
Sbjct: 315 GGWGGQGQQQGGWGGQSGAQQWAHAQGGNR 344
Score = 45 (20.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGS-GRPSRGDW 229
G YGGP YG D+G G G G +G W
Sbjct: 239 GAYGGPGGGGQGGYGG----DYGGGWGQQGGGGQGGW 271
Score = 42 (19.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 229
GG+GGP + G G WG G G+ G W
Sbjct: 269 GGWGGPQQQQG---GG----GWGQQGGGGQ---GGW 294
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 125 (49.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E D+V +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
+ H++ G+ + A + P + + E FGG+G
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 110
Score = 120 (47.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 43/137 (31%), Positives = 60/137 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 146 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 194
Query: 218 GMGSGRPSRGDWRYRPY 234
G S R + Y+PY
Sbjct: 195 GKVSRRGGHQN-SYKPY 210
Score = 67 (28.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 42 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 92
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 156 (60.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 48/141 (34%), Positives = 68/141 (48%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKR-TGH-RGFGFVTFAEEVV 152
SS K+FVG + E TAE YF +FG ++D V + R TG+ RGFGFVTFA+ V
Sbjct: 60 SSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAV 119
Query: 153 ADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM------RTYGRM 206
A++V H I ++V + P D + + F G P+ + Y +
Sbjct: 120 AEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCV 179
Query: 207 YGSLDFDDWGYGMGSGRPSRG 227
YG + Y +GR SRG
Sbjct: 180 YGDIIEHQIMYDHHTGR-SRG 199
Score = 127 (49.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 44/127 (34%), Positives = 61/127 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-- 156
+KIFVG LP ++L+ YF +G I++ + TG RGFGFVTF E DR+
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDW- 215
+ HE+ +QV I A P G +F A G Y G+ + D+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEP-KRTGRDNSFRSYGAS--GKYDQEDSYSGK--ANEDYSMYS 271
Query: 216 GYGMGSG 222
GYG G G
Sbjct: 272 GYG-GYG 277
Score = 108 (43.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 36/109 (33%), Positives = 47/109 (43%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK----EDDFRPVGRM 57
D + RG GF+TF + DSV+ L D HELG V + RA PK ++ FR G
Sbjct: 191 DHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYG-- 248
Query: 58 SHGGYGAYNAYISAATR-------YAALGAPTLYD-----HPGSFYGRG 94
+ G Y ++Y A Y G Y +P FYG G
Sbjct: 249 ASGKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYG 297
Score = 67 (28.6 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
RG GF+TFA + E ++ + H + V + R P+ D
Sbjct: 107 RGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGD 145
Score = 45 (20.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 195 GYGGPMRTYGRMYGSLDFDDWGYGMG 220
GYGG M G YG+ + G G G
Sbjct: 305 GYGGQMFNMG--YGAGGYSHMGSGYG 328
Score = 43 (20.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 195 GYG-GPMRTYG--RMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GYG YG + +G+ + + G G+G G RY PY
Sbjct: 326 GYGVAAAAAYGGGKSHGNGN-NGSSSGKGNGTNGSGPDRYHPY 367
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 137 (53.3 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 47/132 (35%), Positives = 67/132 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGPMRTYGRMYGSLD--- 211
+ R H++ G+ V A +D+ P + + + F GG+GG R G GS D
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGFGGS-RGGGGYGGSGDGYN 129
Query: 212 -FDDWGYGMGSG 222
F + G G G
Sbjct: 130 GFGNDGSNFGGG 141
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 123 (48.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 41/131 (31%), Positives = 58/131 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-TGHRGFGFVTFAEEVVADRVSRRS 160
KK FVG + ++ +L+ YF ++G+I + R +G RGF F F + V V ++
Sbjct: 123 KKTFVGGIKEDTEEYNLKDYFEKYGKIETEGMENRQSGRRGFAFAIFGDHDVDKIVVQKH 182
Query: 161 HEICGQQVAIDSATP---LDDAGPSQ-------NFMMNAAETFGGYGGPMRTYGRMYGSL 210
H I G + A + AG + NFM FGG GG G GS
Sbjct: 183 HTINGHNCEVKKALSKLEMHSAGSQRGRGGGYGNFM-GCGGNFGGKGGYGGGGGGSRGSF 241
Query: 211 DFDDWGY-GMG 220
D GY G+G
Sbjct: 242 GGGDGGYNGVG 252
Score = 100 (40.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E + LR +F + G + D V P+ RGFGFVT++ EEV A +
Sbjct: 32 RKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDA-AM 90
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 195
H++ G+ V A +D+ +M +TF G
Sbjct: 91 CAWLHKVDGRVVEPKKAVSREDSVKLGAHLM-VKKTFVG 128
Score = 73 (30.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFR 52
+D +K RG GF+T++ + V+ M H++ G V +A +ED +
Sbjct: 65 RDPQTKCSRGFGFVTYSCVEEVDAAMCAWLHKVDGRVVEPKKAVSREDSVK 115
Score = 55 (24.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
GGYGG YG G G G GR RG
Sbjct: 268 GGYGGGGPGYGNQGGGSGGGGGGGSGGGGREGRG 301
Score = 50 (22.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 194 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
GG GG ++G Y + D YG G G SRG +
Sbjct: 232 GGGGGSRGSFGGGDGGYNGVGGDGGNYGGGPGYSSRGGY 270
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 109 (43.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 40/140 (28%), Positives = 68/140 (48%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYF-SRFGRI--LDVYVPKRTGH-RGFGFV 145
E SQR G KKIFVG + ++ L+ YF ++ +I +++ + +G RGF FV
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFV 152
Query: 146 TFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYG 204
TF + D+ V ++ H + G + A + + + + + + G +GG G
Sbjct: 153 TFDDHDFVDKIVIQKCHPVNGHDHEVRKALSKQEMASASSSQRSRSGS-GNFGG-----G 206
Query: 205 RMYGSLDFDDWGYGMG-SGR 223
R G D++G+G SGR
Sbjct: 207 RGGGFGGNDNFGHGGNFSGR 226
Score = 88 (36.0 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF T+A+ + V+ +M H++ G V RA +ED RP
Sbjct: 47 RDPNTKHSRGFGFTTYATREDVDAVMNARPHKMDGRVVEPKRAVSREDSQRP 98
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 133 (51.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 44/142 (30%), Positives = 64/142 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPMRTYGRMYG---SLDFD 213
R H+I + I A P + Q GG GG R GR G + F+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGA-RGRGRGQGQNWNQGFN 254
Query: 214 DW-GYGMGSGRPSRGDWRYRPY 234
++ G G+ + GD Y Y
Sbjct: 255 NYYDQGYGNYNSAYGDESYSGY 276
Score = 121 (47.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 37/111 (33%), Positives = 53/111 (47%)
Query: 76 AALGAPTLYDHPGSFYGRGESS-QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
AA AP+L S SS G K+F+G L + + +DL Y SRFG ++D +
Sbjct: 24 AARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 83
Query: 135 KR--TGH-RGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
TG RGFGFV F + D+V + H++ G+ + A L P
Sbjct: 84 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 134
Score = 58 (25.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SV+ ++ + H+L G + RA
Sbjct: 92 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 126
Score = 53 (23.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 191 ETFGGYGGPMRTYGRMYGSLDFDDWGY----GMGS--GRPSRGDWR----YRPY 234
E++ GYGG T G YGS + GY G S G+ SRG Y+PY
Sbjct: 271 ESYSGYGGYDYT-GYNYGSYGYGQ-GYTDYSGQQSTYGKASRGGGNHQNNYQPY 322
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 133 (51.9 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 44/142 (30%), Positives = 64/142 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPMRTYGRMYG---SLDFD 213
R H+I + I A P + Q GG GG R GR G + F+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGA-RGRGRGQGQNWNQGFN 254
Query: 214 DW-GYGMGSGRPSRGDWRYRPY 234
++ G G+ + GD Y Y
Sbjct: 255 NYYDQGYGNYNSAYGDESYSGY 276
Score = 121 (47.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 37/111 (33%), Positives = 53/111 (47%)
Query: 76 AALGAPTLYDHPGSFYGRGESS-QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
AA AP+L S SS G K+F+G L + + +DL Y SRFG ++D +
Sbjct: 24 AARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 83
Query: 135 KR--TGH-RGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
TG RGFGFV F + D+V + H++ G+ + A L P
Sbjct: 84 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 134
Score = 58 (25.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SV+ ++ + H+L G + RA
Sbjct: 92 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 126
Score = 53 (23.7 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 191 ETFGGYGGPMRTYGRMYGSLDFDDWGY----GMGS--GRPSRGDWR----YRPY 234
E++ GYGG T G YGS + GY G S G+ SRG Y+PY
Sbjct: 271 ESYSGYGGYDYT-GYNYGSYGYGQ-GYTDYSGQQSTYGKASRGGGNHQNNYQPY 322
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 116 (45.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 43/144 (29%), Positives = 66/144 (45%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIFVG + ++ LR YF +G+I +++ + +G+ R F FVT
Sbjct: 59 EDSQRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVT 118
Query: 147 F-AEEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 205
F A + V V ++ H + G + A L S + G +GG G
Sbjct: 119 FDAHDSVDKIVIQKYHTVNGHNCEVRKAL-LKQEMASASSSQRGQSCSGNFGGGC---GG 174
Query: 206 MYGSLDFDDWGYGMG-SGRPSRGD 228
+G + ++G G SG+ GD
Sbjct: 175 GFGGNE--NFGCGGNLSGQSGSGD 196
Score = 79 (32.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG F+T+A+ + V+ M V H++ V + +A +ED RP
Sbjct: 13 RDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDSQRP 64
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 129 (50.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 41/127 (32%), Positives = 60/127 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMM----NAAETFGGYGGPMRTYGRMY--GSLD 211
R H+I + I A P + Q NA+ GG G R G+ + G +
Sbjct: 175 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNN 234
Query: 212 FDDWGYG 218
+ D GYG
Sbjct: 235 YYDQGYG 241
Score = 113 (44.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGF 144
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + TG RGFGF
Sbjct: 17 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 75
Query: 145 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
V F + ++V + H++ G+ + A L P
Sbjct: 76 VLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEP 113
Score = 61 (26.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SVE ++ + H+L G + RA
Sbjct: 71 RGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA 105
Score = 45 (20.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 14/58 (24%), Positives = 19/58 (32%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
+ A Q++ + GY P YG Y YG S Y+PY
Sbjct: 244 NSAYSDQSYSGYGGYDYSGYNYPNYGYGPGYTDYSGQQSTYGKASRGGGNHQNNYQPY 301
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 116 (45.9 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSRR 159
KIFVG + ++A +LR YF ++G+I ++V +++G RGF FVTF + D++
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN 151
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGG 198
H I G + A + M +A + G+GG
Sbjct: 152 YHTINGHNCEVRKALSKQE--------MQSAGSQSGHGG 182
Score = 64 (27.6 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+ GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 42 QSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 85
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 131 (51.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 44/143 (30%), Positives = 63/143 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 211
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 174 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 233
Query: 212 FDDWGYGMGSGRPSRGDWRYRPY 234
+ D GYG + GD Y Y
Sbjct: 234 YYDQGYGNYNSAYG-GDQNYSGY 255
Score = 117 (46.2 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGF 144
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + TG RGFGF
Sbjct: 16 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 74
Query: 145 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
V F + D+V + H++ G+ + A L P
Sbjct: 75 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 112
Score = 58 (25.5 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SV+ ++ + H+L G + RA
Sbjct: 70 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 104
Score = 47 (21.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 247 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 301
Score = 46 (21.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 236 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 273
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 119 (46.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 43/138 (31%), Positives = 66/138 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA----EEVVAD 154
+K+F+G L E T E LR + ++G + D V P G RGFGF+T EEV A
Sbjct: 14 RKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDA- 72
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMY 207
++ R H++ G+ V A +D+ P + + +TF GG +R Y Y
Sbjct: 73 AMNARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKTFVGGIKEDTEEHHLRDYFEQY 130
Query: 208 GSLDFDDWGYGMGSGRPS 225
G ++ + GSG+ S
Sbjct: 131 GKIEVIEIMIDPGSGKRS 148
Score = 116 (45.9 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 42/146 (28%), Positives = 67/146 (45%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGHRGFGFVTF 147
E SQR G KK FVG + ++ LR YF ++G+I +++ + +G R F FVTF
Sbjct: 95 EDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGKRSFAFVTF 154
Query: 148 AEEVVADR-VSRRSHEICGQQVAIDSATPLDD--AGPSQNFMMNAAETFG---GYGGPMR 201
+ D+ V ++ H + G + A + + S + + FG G+GG
Sbjct: 155 DDHDSVDKIVIQKYHTVNGHNCEVKKALSKQEQTSVSSSQRDRSGSGNFGHGGGFGGN-D 213
Query: 202 TYGRMYGSLDFDDWGYGMGSGRPSRG 227
+GR G +F G G G + G
Sbjct: 214 NFGR--GG-NFSGGG-GFGGSQGGGG 235
Score = 77 (32.2 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 3 KDQGSKAHRGIGFITFASA--DSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GFIT +A + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKGSRGFGFITCTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 100
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 151 (58.2 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 51/153 (33%), Positives = 73/153 (47%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV---YVPKRTGHRGFGFVTFAE 149
R ++S+ KIFVG +P +LR YF +FG + +V Y ++ RGFGF+TF +
Sbjct: 49 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 106
Query: 150 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 198
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 107 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 164
Query: 199 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 227
P T+ + YG W G +G G P G
Sbjct: 165 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 195
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 129 (50.5 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 41/127 (32%), Positives = 60/127 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMM----NAAETFGGYGGPMRTYGRMY--GSLD 211
R H+I + I A P + Q NA+ GG G R G+ + G +
Sbjct: 211 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNN 270
Query: 212 FDDWGYG 218
+ D GYG
Sbjct: 271 YYDQGYG 277
Score = 113 (44.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGF 144
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + TG RGFGF
Sbjct: 53 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 111
Query: 145 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
V F + ++V + H++ G+ + A L P
Sbjct: 112 VLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEP 149
Score = 61 (26.5 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SVE ++ + H+L G + RA
Sbjct: 107 RGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA 141
Score = 46 (21.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 191 ETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+++ GYGG Y Y ++ ++GYG G
Sbjct: 286 QSYSGYGG----YD--YSGYNYPNYGYGPG 309
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 150 (57.9 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 48/126 (38%), Positives = 60/126 (47%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRVS 157
G +IFVG L E T DL R FSRFG ILD + + + TG RGFGF+TFA+ D
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
R H G+ D ++ A P + E+ G GG Y + G F G
Sbjct: 66 REMH---GRDFG-DRVISVNRAEPKLG--RDDGESHGSRGGRDSGYS-IAGKGSFG--GG 116
Query: 218 GMGSGR 223
G G GR
Sbjct: 117 GGGGGR 122
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 152 (58.6 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 62/228 (27%), Positives = 97/228 (42%)
Query: 13 IGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA 72
IG ++F + D E+L + G T V P R G +++ G +A + A
Sbjct: 42 IGGLSFETTD--ESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDAR 99
Query: 73 TRYAALGAPTLYDHPGSFYGRGESSQ----RIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
+ G P R +SS+ KK+FVG + ++ E LR YF +FG+I
Sbjct: 100 P-HKVDGRAV---EPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKI 155
Query: 129 --LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQN 184
+++ K + RGF F+TF + DR V ++ H + G + A ++
Sbjct: 156 DEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREEMN---R 212
Query: 185 FMMNAAETFGGYGGPMR-TYGRMYGSLDFDDWG--YGMGSGRPSRGDW 229
MN+ GG GG +GR G +G YG G GR G +
Sbjct: 213 VSMNSRGGRGGGGGSGGGNFGRGGGGGGGGGYGGGYGGGGGRGGGGGY 260
Score = 114 (45.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR +F ++G + D V P RGFGFVT++ D +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 158 RRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 98 ARPHKVDGRAVEPKRAVSREDS 119
Score = 51 (23.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 194 GGYGGPMRTYG--RMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GGYGG YG R YGS G G G+ G Y Y
Sbjct: 274 GGYGGGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNY 316
Score = 51 (23.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 182 SQNF-MMNAAETFGGYGGPMRT----YGRMYGSLDFDDWGYGMGSG 222
S N+ M GG GG R+ YG YG GYG GSG
Sbjct: 351 SSNYGPMKGGNYGGGGGGGGRSGGGPYGGGYGGGSGGGGGYGGGSG 396
Score = 49 (22.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GGYGG G G GYG GSG
Sbjct: 379 GGYGGGSGGGGGYGGGSGGGGGGYGGGSG 407
Score = 46 (21.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 193 FGGYGGPMRTYGRMYGSLDFD-DWGYGMGSGRPSRGDW 229
+ GYGG YG G ++ + GYG G G G +
Sbjct: 266 YNGYGGGNGGYGG--GGPNYGGNRGYGSGGGGGGGGGY 301
Score = 44 (20.5 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRM---YGSLDFDDWGYGMGSG 222
G N+ N GG GG YG YG +D++ G G
Sbjct: 278 GGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNYNNNGGGG 323
Score = 39 (18.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 193 FGGYGGPMRTYGRM-------YGSLDFDDWGYGMGSGRPSRG 227
FGG GG +G YG + ++G G G G S G
Sbjct: 334 FGG-GGDYNDFGNYNNQSSSNYGPMKGGNYGGGGGGGGRSGG 374
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWG 216
GG GG G G D++D+G
Sbjct: 322 GGGGGGNFGGGNFGGGGDYNDFG 344
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 47/131 (35%), Positives = 62/131 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L ED+++YF +FG++ D + K T HRGFGFVTF E V ++V
Sbjct: 49 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 108
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 206
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 109 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 168
Query: 207 YGSLDFDDWGY 217
Y +GY
Sbjct: 169 YPGFA-PSYGY 178
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 138 (53.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TAE+L+++F ++G ++DV++PK R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQ------- 241
Query: 162 EICGQQVAI 170
+CG+ + I
Sbjct: 242 SLCGEDLII 250
Score = 124 (48.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQ 166
+V + H I G+
Sbjct: 160 KVMSQRHMIDGR 171
Score = 44 (20.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
KD + +G GF+ F ++ +M H + G
Sbjct: 137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 124 (48.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/147 (30%), Positives = 69/147 (46%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIF G + ++ LR YF G+I +++ +G RGF FVT
Sbjct: 89 EGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVT 148
Query: 147 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 205
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 149 FDDHDSVDKTVIQKYHTVNGHNREVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 202
Query: 206 MYGSLDFDDWGYG-MGSGRPSRGDWRY 231
G +++G+G GSG SRG RY
Sbjct: 203 GGGFGGNENFGHGGNGSGG-SRGGGRY 228
Score = 63 (27.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D +K RG F+T+A+ + V+ M H++ V R +E RP
Sbjct: 44 DPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRP 94
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 115 (45.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 41/130 (31%), Positives = 60/130 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
KKIFVG + ++ +LR YF ++G+ + + RGF FVTF ++ D+ V ++
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGKTETIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQK 186
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGM 219
H I G + A S+ M A G GG GR G+ + GYG
Sbjct: 187 HHTINGHNCEVKRAL-------SKQEMPCAGSQRGRGGGSSNFMGRG-GNFGGRE-GYG- 236
Query: 220 GSGRPSRGDW 229
G G SRG +
Sbjct: 237 GGGGGSRGSY 246
Score = 112 (44.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F + G + D V + +T H RGFGFVT + EEV A +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDA-AM 94
Query: 157 SRRSHEICGQQVAIDSATPLDDA-GPSQNFMM 187
R H++ G+ V A +D+ P + M+
Sbjct: 95 CARPHKVDGRVVEPKRAVSREDSVKPGAHLMV 126
Score = 77 (32.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T + + V+ M H++ G V RA +ED +P
Sbjct: 69 RDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Score = 58 (25.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 180 GPSQNFM-----MNAAETFGGYGGPMR-TYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
G S NFM E +GG GG R +YG Y D YG G SRG +
Sbjct: 217 GGSSNFMGRGGNFGGREGYGGGGGGSRGSYGGSGDRYHGFGGDGGNYGGGPSYSSRGSY 275
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 115 (45.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 41/130 (31%), Positives = 60/130 (46%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
KKIFVG + ++ +LR YF ++G+ + + RGF FVTF ++ D+ V ++
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGKTETIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQK 186
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGM 219
H I G + A S+ M A G GG GR G+ + GYG
Sbjct: 187 HHTINGHNCEVKRAL-------SKQEMPCAGSQRGRGGGSSNFMGRG-GNFGGRE-GYG- 236
Query: 220 GSGRPSRGDW 229
G G SRG +
Sbjct: 237 GGGGGSRGSY 246
Score = 112 (44.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F + G + D V + +T H RGFGFVT + EEV A +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDA-AM 94
Query: 157 SRRSHEICGQQVAIDSATPLDDA-GPSQNFMM 187
R H++ G+ V A +D+ P + M+
Sbjct: 95 CARPHKVDGRVVEPKRAVSREDSVKPGAHLMV 126
Score = 77 (32.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T + + V+ M H++ G V RA +ED +P
Sbjct: 69 RDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Score = 58 (25.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 180 GPSQNFM-----MNAAETFGGYGGPMR-TYGRM---YGSLDFDDWGYGMGSGRPSRGDW 229
G S NFM E +GG GG R +YG Y D YG G SRG +
Sbjct: 217 GGSSNFMGRGGNFGGREGYGGGGGGSRGSYGGSGDRYHGFGGDGGNYGGGPSYSSRGSY 275
Score = 36 (17.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 195 GYGGPMRTYGRMYGSLDFD--DWGYGMGSGRPSRGD 228
G GG + G G +D D G G G G GD
Sbjct: 283 GTGGRVGVGGVDVGGVDVGGVDVGGGGGDGDGGDGD 318
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 127 (49.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 120 (47.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 43/137 (31%), Positives = 60/137 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 240 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 288
Query: 218 GMGSGRPSRGDWRYRPY 234
G S R + Y+PY
Sbjct: 289 GKVSRRGGHQN-SYKPY 304
Score = 67 (28.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 136 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 186
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 130 (50.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTF 147
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 148 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 196
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 197 G 197
G
Sbjct: 206 G 206
Score = 120 (47.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 43/137 (31%), Positives = 60/137 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 290
Query: 218 GMGSGRPSRGDWRYRPY 234
G S R + Y+PY
Sbjct: 291 GKVSRRGGHQN-SYKPY 306
Score = 67 (28.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
RG GF+ F ++SV+ +M H+L G + RA + PV ++ GG
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 150 (57.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 62/218 (28%), Positives = 94/218 (43%)
Query: 13 IGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA 72
IG ++F + D ++L + G T V P R G +++ NA + A
Sbjct: 37 IGGLSFETTD--DSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDAR 94
Query: 73 TRYAALGAPTLYDHPGSFYGRGESSQRIG----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
+ G L + P R +SS+ KKIFVG + + LR YF +FG+I
Sbjct: 95 P-HKVDGR--LVE-PKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKI 150
Query: 129 --LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQN 184
+++ V +TG+ RGF FVTF + DR V ++ H + G + A + N
Sbjct: 151 EVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKALSKQEMA---N 207
Query: 185 FMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
GG GG YG G + +D+G G G G
Sbjct: 208 TGRGGGGGGGGGGGNFNRYGNN-GGYN-NDFGGGGGGG 243
Score = 113 (44.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P RGFGFVT++ +EV A +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNAS-M 91
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 92 DARPHKVDGRLVEPKRAVSREDS 114
Score = 52 (23.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 194 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
GG GG Y G+ ++G G G G S G Y +
Sbjct: 328 GGGGGGYNNYNNGNGNFGGGNFGGGGGGGGNSGGGGNYNDF 368
Score = 47 (21.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 14/35 (40%), Positives = 14/35 (40%)
Query: 193 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 227
FGG G YG YG G G G G S G
Sbjct: 385 FGGGGRNSGPYGGGYGGGSSGSGGGGSGYGGGSGG 419
Score = 47 (21.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 188 NAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
N + G YGG G G + + G G G G G Y Y
Sbjct: 291 NGGGSPGNYGGNRGYGGGGGGGHGYGNQGGGYGGGNSGGGGGGYNNY 337
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 193 FGGYGGPMRTYGRMYGSLDF---DDWGYGMGSGRPSRG 227
FG Y YG M G+ + YG G G S G
Sbjct: 368 FGNYNSQQSNYGPMKGNFGGGGRNSGPYGGGYGGGSSG 405
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 148 (57.2 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 47/131 (35%), Positives = 62/131 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L ED+++YF +FG++ D + K T HRGFGFVTF E V ++V
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 206
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 148 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 207
Query: 207 YGSLDFDDWGY 217
Y +GY
Sbjct: 208 YPGFA-PSYGY 217
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SRR 159
+F+G L + + + LR YFS+FG I + V P RGFGFVTFA+ D+V +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 160 SHEICGQQVAIDSATP 175
HE+ + + A P
Sbjct: 61 HHELDSKTIDPKVAFP 76
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 148 (57.2 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 47/131 (35%), Positives = 62/131 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L ED+++YF +FG++ D + K T HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 206
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 229
Query: 207 YGSLDFDDWGY 217
Y +GY
Sbjct: 230 YPGFA-PSYGY 239
Score = 127 (49.8 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA 148
G SQ K+F+G L + + + LR YFS+FG I + V P RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 149 EEVVADRV-SRRSHEICGQQVAIDSATP 175
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 131 (51.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 44/143 (30%), Positives = 63/143 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 211
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 212 FDDWGYGMGSGRPSRGDWRYRPY 234
+ D GYG + GD Y Y
Sbjct: 353 YYDQGYGNYNSAYG-GDQNYSGY 374
Score = 117 (46.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGF 144
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + TG RGFGF
Sbjct: 135 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 145 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
V F + D+V + H++ G+ + A L P
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 231
Score = 58 (25.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SV+ ++ + H+L G + RA
Sbjct: 189 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 47 (21.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 366 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 355 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 392
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 131 (51.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 44/143 (30%), Positives = 63/143 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 211
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 212 FDDWGYGMGSGRPSRGDWRYRPY 234
+ D GYG + GD Y Y
Sbjct: 353 YYDQGYGNYNSAYG-GDQNYSGY 374
Score = 117 (46.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGF 144
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + TG RGFGF
Sbjct: 135 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 145 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
V F + D+V + H++ G+ + A L P
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 231
Score = 58 (25.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SV+ ++ + H+L G + RA
Sbjct: 189 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 47 (21.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 366 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 355 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 392
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 131 (51.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 44/143 (30%), Positives = 63/143 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 211
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 212 FDDWGYGMGSGRPSRGDWRYRPY 234
+ D GYG + GD Y Y
Sbjct: 353 YYDQGYGNYNSAYG-GDQNYSGY 374
Score = 117 (46.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGF 144
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + TG RGFGF
Sbjct: 135 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 145 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 181
V F + D+V + H++ G+ + A L P
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 231
Score = 58 (25.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRA 44
RG GF+ F A SV+ ++ + H+L G + RA
Sbjct: 189 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 47 (21.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 180 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 234
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 366 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 46 (21.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 355 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 392
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 122 (48.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 46/142 (32%), Positives = 65/142 (45%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VS 157
KKIFVG + ++ +LR F +G+I ++V +++G RG FVTF + D+ V
Sbjct: 57 KKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVV 116
Query: 158 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 207
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 117 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 170
Query: 208 GSLDFDDWGYGMGSGRPSRGDW 229
G GYG G G SRG +
Sbjct: 171 GGNFGGRGGYG-GGGGGSRGSY 191
Score = 64 (27.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++ + V+ M H+ V RA +ED +P
Sbjct: 2 RDPKTKRSRGFGFVTYSCVEEVDAAMYARPHK---RVVEPKRAVSREDSVKP 50
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 148 (57.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 47/131 (35%), Positives = 62/131 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L ED+++YF +FG++ D + K T HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 206
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 229
Query: 207 YGSLDFDDWGY 217
Y +GY
Sbjct: 230 YPGFA-PSYGY 239
Score = 130 (50.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFG 143
PG+ G SQ K+F+G L + + + LR YFS+FG I + V P RGFG
Sbjct: 7 PGTS-GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 144 FVTFAEEVVADRV-SRRSHEICGQQVAIDSATP 175
FVTFA+ D+V + HE+ + + A P
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFP 98
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 126 (49.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSRR 159
K+F+G L + T ++LR YF ++G + D+ + K TG RGFGF++F + D V +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 216
H + G+ + A P D+ + + GG G +R + + F WG
Sbjct: 220 QHILDGKVIDPKRAIPRDEQDKTGKIFV------GGIGPDVRP--KEFEEF-FSQWG 267
Score = 108 (43.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRVSRR 159
KIFVG + + ++ +FS++G I+D + + K TG RGFGFVT+ DRV +
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 160 SH-EICGQQVAIDSATPLD-DAGPSQNFMMNAAETF---GGYGGPMRTYGRMY 207
+ +++ I A P S N N GG G + +MY
Sbjct: 304 KFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNGGNNMNRRGGNFGNQGDFNQMY 356
Score = 88 (36.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF++F SV+ ++ H L G + RA P+++ + G++ GG
Sbjct: 192 KDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDK-TGKIFVGGI 250
Query: 63 G 63
G
Sbjct: 251 G 251
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 118 (46.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 40/134 (29%), Positives = 63/134 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVS- 157
KKIFVG + ++ +L+ YF ++G+I +DV +++G RGF FVTF + D+++
Sbjct: 113 KKIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAV 172
Query: 158 RRSHEICGQQVAID---SATPLDDAGPSQNF------MMNAAETFGGYGGPMRTYGRMYG 208
++ H I G + S + AG + +M F G GG G G
Sbjct: 173 QKYHTINGHNCEMKKVLSKQGMQSAGSQRGRGGGSGNLMGRGGNFEGGGGNSGHGGNFSG 232
Query: 209 SLDFDDWGYGMGSG 222
+ G G GSG
Sbjct: 233 RGGYSSRG-GYGSG 245
Score = 65 (27.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 12 GIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
G GF+T++ + V+ M H++ G VV RA +ED +P
Sbjct: 65 GFGFVTYSCVEEVDAAMCARPHKVDGR-VVGPRAVSREDSVKP 106
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 146 (56.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR 158
KKIFVG L ED+++YF +FG++ D + K T HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 159 -RSHEICGQQVAIDSATP 175
HEI + V A P
Sbjct: 170 IHFHEINNKMVECKKAQP 187
Score = 126 (49.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA 148
G SQ K+F+G L + + + LR YFS+FG I + V P RGFGFVTFA
Sbjct: 11 GSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 149 EEVVADRV-SRRSHEICGQQVAIDSATP 175
+ D+V ++ HE+ + + A P
Sbjct: 71 DAASVDKVLAQPHHELDSKTIDPKVAFP 98
Score = 37 (18.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 220 GSGRPSRGDWRYRPY 234
GSGR +RG Y Y
Sbjct: 263 GSGRGARGRGGYAAY 277
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 148 (57.2 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 62/202 (30%), Positives = 92/202 (45%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
D + +G GF+ F D E T E+ G V + P +H Y
Sbjct: 212 DANTGHSKGYGFVRFG--DESERSRAMT-EMNG--VYCSSRAMRIGVATPKKPSAHEQYS 266
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
+ +S YA+ GA T H GS G+SS IFVG L E T E+LR+ F+
Sbjct: 267 SQAVILSGG--YASNGAAT---H-GS-QSDGDSSNTT---IFVGGLDSEVTDEELRQSFN 316
Query: 124 RFGRILDVYVPKRTGHRGFGFVTFAEEVVA-DRVSRRSHEICGQQ-VAID-SATPLD--- 177
+FG ++ V +P G +G GFV F++ A + + + S I G+Q V + +P +
Sbjct: 317 QFGEVVSVKIP--AG-KGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQM 373
Query: 178 --DAGPSQNFMMNAAETFGGYG 197
D+G N N + +GGYG
Sbjct: 374 RTDSGSQWNGGYNGRQNYGGYG 395
Score = 138 (53.6 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 54/166 (32%), Positives = 80/166 (48%)
Query: 58 SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAED 117
+H Y + +S YA+ GA T H GS G+SS IFVG L E T E+
Sbjct: 261 AHEQYSSQAVILSGG--YASNGAAT---H-GS-QSDGDSSNTT---IFVGGLDSEVTDEE 310
Query: 118 LRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVA-DRVSRRSHEICGQQVAIDSATPL 176
LR+ F++FG ++ V +P G +G GFV F++ A + + + S I G+Q A+ +
Sbjct: 311 LRQSFNQFGEVVSVKIP--AG-KGCGFVQFSDRSSAQEAIQKLSGAIIGKQ-AVRLSWGR 366
Query: 177 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG-YGMGS 221
A Q + ++ GGY G G YG+ D G Y G+
Sbjct: 367 SPAN-KQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA 411
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVSRR 159
K F+G +PQ T++ + YF ++G + V + + T +RGF FVT A + +R+ R
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 160 SHEICGQQVAI---DSATPLD 177
+HE+ G++V + ++ TP D
Sbjct: 175 THELNGKRVDVREENNTTPSD 195
Score = 105 (42.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 33/80 (41%), Positives = 42/80 (52%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY--VPKRTGH-RGFGFVTFAEE-VVADR 155
I +KIFVG L T + L YFS FG I DV V +G R FGFV F+ E VA
Sbjct: 196 IQRKIFVGGLNYYWTKDTLESYFSTFGEI-DVVQIVLDSSGRSRCFGFVVFSNENSVAKV 254
Query: 156 VSRRSHEICGQQVAIDSATP 175
+ + H+I + V + A P
Sbjct: 255 LKHKRHKIYDKMVEVRKAEP 274
Score = 84 (34.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVV---DRATPKE 48
+D +K +RG F+T AS + E ++ DTHEL G V V + TP +
Sbjct: 147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSD 195
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVSRR 159
K F+G +PQ T++ + YF ++G + V + + T +RGF FVT A + +R+ R
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 160 SHEICGQQVAI---DSATPLD 177
+HE+ G++V + ++ TP D
Sbjct: 175 THELNGKRVDVREENNTTPSD 195
Score = 105 (42.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 33/80 (41%), Positives = 42/80 (52%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY--VPKRTGH-RGFGFVTFAEE-VVADR 155
I +KIFVG L T + L YFS FG I DV V +G R FGFV F+ E VA
Sbjct: 196 IQRKIFVGGLNYYWTKDTLESYFSTFGEI-DVVQIVLDSSGRSRCFGFVVFSNENSVAKV 254
Query: 156 VSRRSHEICGQQVAIDSATP 175
+ + H+I + V + A P
Sbjct: 255 LKHKRHKIYDKMVEVRKAEP 274
Score = 84 (34.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVV---DRATPKE 48
+D +K +RG F+T AS + E ++ DTHEL G V V + TP +
Sbjct: 147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSD 195
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 127 (49.8 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 43/130 (33%), Positives = 64/130 (49%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFA--EEVVADRVS 157
K+F+G L + E L + FS++G+I +V V K T RGFGFVTF ++ ++
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY--GGPMRTYG-RMYGSLDFDD 214
+ G+Q+ +D A +G + + G+ GG R G R YGS FD+
Sbjct: 66 MNGKAVDGRQIRVDQAGK--SSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDN 123
Query: 215 --WGYGMGSG 222
GYG SG
Sbjct: 124 RSGGYGGSSG 133
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 122 (48.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI-LD---VYVPKRTG-HRG--FGFVTFAEEVVAD 154
KKIFVG L T ED+++YF +F ++ +D + K T HRG FGFVTF E + +
Sbjct: 202 KKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVE 261
Query: 155 RVSR-RSHEICGQQVAID--SATPLDDAGPS 182
+V HEI + V ++ A P + P+
Sbjct: 262 KVCEIHFHEINNKMVQVECKKAQPKEVMSPT 292
Score = 66 (28.3 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVD 42
RG GF+TF V+ ++ + HEL TV +D
Sbjct: 150 RGFGFVTFMDQAGVDKVLAQSRHELDSKTVQID 182
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 126 (49.4 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 99 RIGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFA-EEVVA 153
RIG+++ FV ++P A + +LR +F++FG + VP K TG HRG G+V F+ EE +
Sbjct: 15 RIGRRVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHRGMGWVHFSSEEDLQ 74
Query: 154 DRVSRRSHEICGQQVAIDSATP 175
+ + + H I G ++ I + P
Sbjct: 75 NALQQEKHIIDGVKLHIQARRP 96
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 126 (49.4 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA 148
G SQ K+F+G L + + + LR YFS+FG I + V P RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 149 EEVVADRVSRRSH 161
+ D+V + H
Sbjct: 71 DPASVDKVLGQPH 83
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 126 (49.4 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 43/130 (33%), Positives = 64/130 (49%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTF--AEEVVADRVS 157
K+F+G L E + L + F+++GRI +V V K T RGFGFVTF ++ ++
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY--GGPMRTYG-RMYGSLDFDD 214
+ G+Q+ +D A +G + + G+ GG R G R YGS FD+
Sbjct: 66 MNGKSVDGRQIRVDQAGK--SSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDN 123
Query: 215 --WGYGMGSG 222
GYG SG
Sbjct: 124 RSGGYGGSSG 133
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 125 (49.1 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 41/122 (33%), Positives = 57/122 (46%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTG-HRGFGFVTFAEEVVADRVSR- 158
KIFVG L E L+ F FG+I+D V + + +G RGFGFVT+ VA+ +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-YGSLDFDDWG 216
++ E+ G+ + + P D G GGYGG Y R +G F G
Sbjct: 97 MQNKELDGRIIGVH---PADSGGGGGG---GGFARRGGYGGGRGGYARGGFGRGGFGGGG 150
Query: 217 YG 218
YG
Sbjct: 151 YG 152
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 124 (48.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRV--SR 158
G ++FVG L A D+ ++F +GRI ++++ GFGFV F + AD
Sbjct: 3 GCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKN-----GFGFVEFEDHRDADDAIYEL 57
Query: 159 RSHEICGQQVAIDSATPLDDAGP-SQNFMMNAAETFGGYGGPMRTYGRM 206
E+C ++V I+ A G +Q F + YG P+RT R+
Sbjct: 58 NGKELCDERVTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRI 106
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 124 (48.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SR 158
K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E D+V +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 159 RSHEICGQQV 168
+ H++ G+ +
Sbjct: 139 KEHKLNGKVI 148
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 124 (48.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 43/136 (31%), Positives = 63/136 (46%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEE-VVADRVSR 158
+ FVG L EDL+R FS+FG ++D + + +G RGFGFVTF +E + D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 159 RS-HEICGQQVAIDSATPLDDAGPSQNFMMNA----AETFGGY-GGPMRTY-GRMYGSLD 211
+ E+ G+ + ++ A G + + GGY GG Y G G +
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYE 126
Query: 212 FDDWGYGMGSGRPSRG 227
GYG G G RG
Sbjct: 127 RRSGGYGSGGGGGGRG 142
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 112 (44.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIF G + ++ LR YF + G+I +++ +G RGF FVT
Sbjct: 88 EGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVT 147
Query: 147 FAEEVVADR-VSRRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPM 200
F + D+ V ++ H + G + + G N N FGG GG
Sbjct: 148 FDDHDSVDKTVIQKYHTVNGHNRERGRSGSGNFGGGRGGGDGYNGFGNDGSNFGG-GGSY 206
Query: 201 RTYGRM------YGSLDFDDWGYGMGSGRPSRGDWRY 231
+G +G + +++G G SG P G RY
Sbjct: 207 SDFGNYNNRSSNFGPVKGENFG-GRSSG-PDGGGGRY 241
Score = 63 (27.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D +K RG F+T+A+ + V+ M H++ V R +E RP
Sbjct: 43 DPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRP 93
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 122 (48.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 49/133 (36%), Positives = 63/133 (47%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAE-EVVADRVSR 158
K+FVG L + L +FS FG I +V V K T RGFGF+TF E +D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 159 RSHE-ICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 212
+ E + G+Q+ +D A G S A FGG G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGSRGGA--FGGRG---RSYSRGGGDQGYGSGRY 115
Query: 213 DD--WGYGMGSGR 223
D GYG G GR
Sbjct: 116 DSRPGGYGYGYGR 128
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 140 (54.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 60/198 (30%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 52 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHVTVKK 109
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 110 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 169
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + QN FG +G G +G GS +F
Sbjct: 170 YHTINGHNAEVRKALSRQEMQEVQNSRSGRGGNFG-FGDARGGGGNFGPGPGS-NFRGGA 227
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 228 DGYGSGR-GFGDG-YNGY 243
Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 77 ARPHTIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 134
Query: 211 D 211
D
Sbjct: 135 D 135
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 121 (47.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSRR 159
KIFVG LP T LR+YF FG I + V ++TG RG+GFVT A+ A+R +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 160 SHEIC-GQQVAIDSA 173
+ I G++ ++ A
Sbjct: 72 PNPIIDGRKANVNLA 86
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 121 (47.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 43/126 (34%), Positives = 58/126 (46%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTGHR--GFGFVTFA--EEVVADRVS 157
K+FVG L E T E L + FS++G++ +V V K R R GFGFVTF E+ ++
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ G+Q+ +D A G S N GG G + G D GY
Sbjct: 67 MNGKSVDGRQIRVDQA------GKSSNDRRGGYR--GGSSGGRGFFRGGRGRGGGGDRGY 118
Query: 218 GMGSGR 223
G GS R
Sbjct: 119 G-GSSR 123
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 121 (47.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 48/133 (36%), Positives = 60/133 (45%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSR- 158
K+FVG L + L +FS FG I +V V K T RGFGF+TF A V R
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 212
+ G+Q+ +D A G S A FG +G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGAHGRG-RSYSRGGGDQGYGSGRY 117
Query: 213 DD--WGYGMGSGR 223
D GYG G GR
Sbjct: 118 DSRPGGYGYGYGR 130
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 140 (54.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 58/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G++ +++ +++G RGFGF TF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQK 173
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG---GYGGPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +GG +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSHGGG-GNFGPGPGS-NFRGGS 231
Query: 217 YGMGSGRPSRGDWRYRPY 234
YG GSGR GD Y Y
Sbjct: 232 YGYGSGR-GFGDG-YNGY 247
Score = 129 (50.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKV 138
Query: 211 D 211
D
Sbjct: 139 D 139
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 120 (47.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVADRV-SRR 159
+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F E D+V ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 197
H++ G+ + A + P + + E FGG+G
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 108
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 120 (47.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + + + LR YFS+FG I + V P RGFGFVTFA+ D+V +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 159 RSHEICGQQVAIDSATP 175
HE+ + + A P
Sbjct: 78 PHHELDSKTIDPKVAFP 94
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 120 (47.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 43/137 (31%), Positives = 60/137 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 34 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 94 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 142
Query: 218 GMGSGRPSRGDWRYRPY 234
G S R + Y+PY
Sbjct: 143 GKVSRRGGHQN-SYKPY 158
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 120 (47.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 48/133 (36%), Positives = 63/133 (47%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAE-EVVADRVSR 158
K+FVG L + L +FS FG I +V V K T RGFGF+TF E +D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 159 RSHE-ICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 212
+ E + G+Q+ +D A G S A FG +G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGAHGRG-RSYSRGGGDQGYGSGRY 117
Query: 213 DD--WGYGMGSGR 223
D GYG G GR
Sbjct: 118 DSRPGGYGYGYGR 130
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 134 (52.2 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 80 APTLYDHPGSFYGRGESSQR--IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PK 135
AP+++ P + SQ+ KIFVG LP T LR+YF FG I + V +
Sbjct: 8 APSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 67
Query: 136 RTGH-RGFGFVTFAEEVVADRVSRRSHEIC-GQQVAIDSA 173
+TG RG+GFVT A+ ADR + + I G++ ++ A
Sbjct: 68 QTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLA 107
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 137 (53.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 65/230 (28%), Positives = 96/230 (41%)
Query: 2 PKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
PK+ IG ++F + D E+L + G T V P R G +++
Sbjct: 7 PKEPEQLRKLFIGALSFETTD--ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG-----KKIFVGRLPQEATAE 116
+A ++A R + + P R E SQR G KKIFVG + +E T
Sbjct: 65 VEEVDAAMNA--RPQKVNGRVV--EPKRAVSR-EDSQRPGAHLTVKKIFVGGI-KEDTEH 118
Query: 117 DLRRYFSRFGR--ILDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDS 172
LR YF ++G+ ++++ + G RGF FVTF + D+ V ++ H + G
Sbjct: 119 HLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETRV 178
Query: 173 ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
+ A SQ + FG Y G R YG GYG GSG
Sbjct: 179 KQDMASASSSQRGRSGSGN-FG-YSGGSRGYGSGGQGYGNQGSGYG-GSG 225
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 43/137 (31%), Positives = 65/137 (47%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP----MRTYGRMYGSL 210
+ R ++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPQKVNGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEHHLRDYFEQYGKT 130
Query: 211 DFDDWGYGMGSGRPSRG 227
+ + G G+ RG
Sbjct: 131 EVIEIMTDRGRGK-KRG 146
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 130 (50.8 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 41/141 (29%), Positives = 61/141 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 28 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 87
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 88 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 143
Query: 215 WGYGMGS-GRPSRGDWRYRPY 234
W G G+ G S+G Y Y
Sbjct: 144 WNQGYGNYGYNSQGYGGYGGY 164
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 118 (46.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQV 168
+ R H++ G+ V
Sbjct: 73 NARPHKVDGRVV 84
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 130 (50.8 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 41/142 (28%), Positives = 61/142 (42%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 29 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 88
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 214
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 89 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQG 148
Query: 215 WG-YGMGS-GRPSRGDWRYRPY 234
+G YG S G G + Y Y
Sbjct: 149 YGNYGYNSPGYGGYGGYDYTGY 170
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 136 (52.9 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 64/236 (27%), Positives = 99/236 (41%)
Query: 2 PKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
PK+ IG ++F + D E+L + G T V P R G +++
Sbjct: 7 PKEPEQLRKLFIGGLSFETTD--ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG-----KKIFVGRLPQEATAE 116
+A ++ T + G P R E SQR G KKIFVG + ++
Sbjct: 65 VEEVDAAMNT-TPHKVDGRVV---EPKRAVSR-EDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 117 DLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDS 172
LR YF ++G+I +++ + +G RGF FVTF + D+ V ++ H + G +
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRK 179
Query: 173 ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG-SGRPSRG 227
A P + S + G +GG GR G D++G G SGR G
Sbjct: 180 ALPKQEMA-SASSSQRGRRGSGNFGG-----GRGDGFGGNDNFGRGGNFSGRGGFG 229
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 132 (51.5 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 41/125 (32%), Positives = 56/125 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 17 KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAV 76
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ H I G +V + A P +D A GG GG G G D G
Sbjct: 77 VKFHPIQGHRVEVKKAVPKEDIHAGGG---GARAARGGRGGGRGRGGGGGGGGGRDQNGL 133
Query: 218 GMGSG 222
G G
Sbjct: 134 AKGGG 138
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 131 (51.2 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 44/143 (30%), Positives = 63/143 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 29 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 88
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 211
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 89 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 148
Query: 212 FDDWGYGMGSGRPSRGDWRYRPY 234
+ D GYG + GD Y Y
Sbjct: 149 YYDQGYGNYNSAYG-GDQNYSGY 170
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTGHR--GFGFVTFAEEVVADRVSRR 159
KIFV RLP E L+ +FS+FG I D YV R R GFGFV F +
Sbjct: 5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64
Query: 160 SHEICGQQVAIDSATPLD 177
+EI G+++ ++ A D
Sbjct: 65 DNEINGRKLVVNEALAKD 82
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 47/136 (34%), Positives = 59/136 (43%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSR- 158
K+FVG L L +FS FG I +V V K T RGFGF+TF A R
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY----GGPMRTYGRMYGSLDFD 213
+ G+Q+ +D A G S A FGGY G P + YGS +D
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGSRGGA--FGGYERGRGYPRGGGDQGYGSGRYD 118
Query: 214 D------WGYGMGSGR 223
+ +GYG G GR
Sbjct: 119 NRPGAYGFGYGYGYGR 134
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 42/129 (32%), Positives = 64/129 (49%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFA--EEVVADRVS 157
K+FVG L + + L + FS++G+I +V V K T RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 218 GMGSGRPSR 226
G G+ SR
Sbjct: 124 G-GNRFESR 131
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + T E L+ YF +FG + + V P RGFGFVT+ ++ D+V ++
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKVLAQ 82
Query: 159 RSHEICGQQVA 169
HE+ + V+
Sbjct: 83 NRHELDSKTVS 93
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 135 (52.6 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 58/191 (30%), Positives = 84/191 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG-----K 102
P + S G +G + Y S + AA+ A P D P R E S + G K
Sbjct: 48 PANKRSRG-FG-FVTYSSVSEVDAAMTARPHKVDGRVVEPKRAVSR-EDSNKPGAHLTVK 104
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSR 158
KIFVG + ++ +R YF +G+I +D+ + TG RGF FVTF + D+ V++
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQN--FMMNAAETFGGYGGPMRT--YGRMYGSLD-FD 213
+ H I + A P + S N + F G GG YG G D ++
Sbjct: 165 KYHTINSHNCEVRKALPKQEMQSSSNQRYRGGGGGNFTGRGGNFGRGGYGGGRGGGDGYN 224
Query: 214 DWG--YGMGSG 222
+G YG G G
Sbjct: 225 GFGGNYGGGPG 235
Score = 116 (45.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T + LR +F ++G++ D V P RGFGFVT++ D ++
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 158 RRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDS 94
Score = 86 (35.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T++S V+ M H++ G V RA +ED +P
Sbjct: 46 RDPANKRSRGFGFVTYSSVSEVDAAMTARPHKVDGRVVEPKRAVSREDSNKP 97
Score = 74 (31.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 31/110 (28%), Positives = 43/110 (39%)
Query: 129 LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQN-- 184
+D+ + TG RGF FVTF + D+ V+++ H I + A P + S N
Sbjct: 133 IDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQEMQSSSNQR 192
Query: 185 FMMNAAETF---------GGYGGPMRT---YGRMYGSLDFDDWGYGMGSG 222
+ F GGYGG Y G+ GYG G G
Sbjct: 193 YRGGGGGNFTGRGGNFGRGGYGGGRGGGDGYNGFGGNYGGGPGGYGGGRG 242
Score = 52 (23.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 193 FGGYGGPMRTYGRMYG-------SLDFDDWGYGMGSG 222
FG YGG +G M G S + GYG G G
Sbjct: 265 FGNYGGQQSNFGPMKGNNFGGRNSGPYGGGGYGSGGG 301
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 194 GGYGGPMRTYGRMYG 208
GGYGG YG G
Sbjct: 235 GGYGGGRGGYGNFGG 249
>UNIPROTKB|F1LXW0 [details] [associations]
symbol:F1LXW0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00212167 Ensembl:ENSRNOT00000008039
Uniprot:F1LXW0
Length = 293
Score = 93 (37.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
+D +K RG GF+T+A+ + V+ +M H++ G V RA +ED RP
Sbjct: 45 RDPNTKRSRGFGFVTYATVEEVDAVMNARPHKVDGRVVEPKRAVSREDSQRP 96
Score = 83 (34.3 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 36/132 (27%), Positives = 52/132 (39%)
Query: 95 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEE 150
E SQR G KIFVG + ++ LR Y + G+ + KR GF VTF
Sbjct: 91 EDSQRPGAHLAVKIFVGGIKEDTEEHHLRDYSEQNGKKQRQWKKKR----GFALVTFDAH 146
Query: 151 VVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSL 210
D++ + + G + A + + + + + GY G R YG
Sbjct: 147 DSVDKIVIQKYHTNGHSCEVRKALWKQEMTSASS----KQKGYPGYSGGSRGYGSGGQGY 202
Query: 211 DFDDWGYGMGSG 222
GYG GSG
Sbjct: 203 GNQGSGYG-GSG 213
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 110 (43.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 39/112 (34%), Positives = 50/112 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEV--VADRV 156
KKIFVG P EAT ++ R F FG I + +P K RGF F+TF EE V +
Sbjct: 156 KKIFVGLNP-EATEKN--RDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVL 212
Query: 157 SRRSHEICGQQVAIDSATPLDD-----AGPSQNFMMNAAETFGGYGGPMRTY 203
++ H I G++ I A P +D G N G GG Y
Sbjct: 213 EKKFHTISGRKCEIKVAQPKEDYQQQQCGSGGRGNRNGGNRGSGSGGGSTNY 264
Score = 108 (43.1 bits), Expect = 0.00092, P = 0.00092
Identities = 46/171 (26%), Positives = 76/171 (44%)
Query: 44 ATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ-RIGK 102
AT + P G G A + A + A LG P PG+ R E Q ++ K
Sbjct: 14 ATENRHEAAPEGESLPGSAPAPGSLPQRALK-AGLG-PA----PGN-QNRIEGEQIKVSK 66
Query: 103 ------KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVVA 153
K+FVG L +DL+ YF++FG ++D + + TG RGFGFV +
Sbjct: 67 NVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASV 126
Query: 154 DRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFM-MNAAET-----FGGYG 197
+++ ++ H + G + + A + + + F+ +N T FG +G
Sbjct: 127 EKILDQKEHRLNGDVIDPEKAKVMKNDPVKKIFVGLNPEATEKNRDFGEFG 177
Score = 62 (26.9 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHG 60
D + RG GF+ A SVE ++ H L G + ++A ++D PV ++ G
Sbjct: 106 DPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKAKVMKND--PVKKIFVG 161
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 135 (52.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 40/100 (40%), Positives = 51/100 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRT--GH-RGFGFVTFAEEVVADRVSRR 159
KIFVG L TA+DLRRYF +FG+++D V T G +G+GF+TF + V R +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 160 SHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGY 196
S I ID T L AG QN MN G +
Sbjct: 73 SKPI------IDGRTTNCNLASAGAKQN--MNHPNLNGSF 104
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 125 (49.1 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 44/146 (30%), Positives = 69/146 (47%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVT 146
E SQR G KKIFVG + ++ LR YF ++G+I +++ + +G RGF FVT
Sbjct: 57 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTGRGSGKKRGFAFVT 116
Query: 147 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 205
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 117 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 170
Query: 206 MYGSLDFDDWGYGMG-SGRPSRGDWR 230
G D++G G SGR G R
Sbjct: 171 GGGFGGNDNFGRGGNFSGRGGFGGSR 196
Score = 43 (20.2 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 32 HELGGSTVVVDRATPKEDDFRP 53
H++ G V RA +ED RP
Sbjct: 41 HKVDGRVVEPKRAVSREDSQRP 62
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 131 (51.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 44/143 (30%), Positives = 63/143 (44%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L + + E ++ YF FG I ++ +P K RGF F+T+ EE V +
Sbjct: 25 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 84
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 211
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 85 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 144
Query: 212 FDDWGYGMGSGRPSRGDWRYRPY 234
+ D GYG + GD Y Y
Sbjct: 145 YYDQGYGNYNSAYG-GDQNYSGY 166
Score = 80 (33.2 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSH 59
+P D + RG FIT+ + V+ L+ H++G + A PKE +R +
Sbjct: 56 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEV-YRQQQQQQK 114
Query: 60 GGYGA 64
GG GA
Sbjct: 115 GGRGA 119
Score = 53 (23.7 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYG 92
GYG YN+ Y+ G YD+ G YG
Sbjct: 149 GYGNYNSAYGGDQNYSGYGG---YDYTGYNYG 177
Score = 45 (20.9 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 191 ETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 220
+ + GYGG Y Y ++ ++GYG G
Sbjct: 202 QNYSGYGG----YD--YTGYNYGNYGYGQG 225
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 134 (52.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 4 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 61
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 62 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 121
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 122 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 179
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 180 DGYGSGR-GFGDG-YNGY 195
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 135 (52.6 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 59/198 (29%), Positives = 88/198 (44%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 44 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 101
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF+ +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 102 LFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 162 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 219
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 220 DGYGSGR-GFGDG-YNGY 235
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/121 (31%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L + T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFAEYGKI 126
Query: 211 D 211
D
Sbjct: 127 D 127
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 124 (48.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 45/137 (32%), Positives = 64/137 (46%)
Query: 102 KKIFVGRLPQEATAED-LRRYFSRFGRILDVYVPKRTGH---RGFGFVTFAEEVVADR-V 156
KKIFVG + QE T E LR F ++G+I D+ + G RGF F TF + D+ V
Sbjct: 99 KKIFVGGI-QEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIV 156
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTY---GRMYGSLDFD 213
++ H + G + A S+ M +A+ + GGYGG Y G+ +
Sbjct: 157 IQKYHTVNGHNCEVREAL-------SKQEMASASSSGGGYGGSGDGYNGFGKKHRGYGSG 209
Query: 214 DWGYG-MGSGRPSRGDW 229
GYG GSG G +
Sbjct: 210 GQGYGNQGSGYGGSGSY 226
Score = 43 (20.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 7 SKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
+K RG GF+T S+ + H++ V R + D RP
Sbjct: 46 TKHSRGFGFVTKPWWRSLAAMNARPHKVDERVVEPKRDVSRGDSQRP 92
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 130 (50.8 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTF 147
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + + TG RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 148 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 196
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 197 G 197
G
Sbjct: 206 G 206
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 134 (52.2 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 55 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 112
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 113 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 172
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 173 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 230
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 231 DGYGSGR-GFGDG-YNGY 246
Score = 130 (50.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 137
Query: 211 D 211
D
Sbjct: 138 D 138
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 135 (52.6 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 HHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 211 D 211
D
Sbjct: 139 D 139
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 131 (51.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 80 APTLYDHPGSFYGRGESSQR--IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PK 135
+P+++ P + SQ+ KIFVG LP T LR+YF FG I + V +
Sbjct: 8 SPSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 67
Query: 136 RTGH-RGFGFVTFAEEVVADRVSRRSHEIC-GQQVAIDSA 173
+TG RG+GFVT A+ ADR + + I G++ ++ A
Sbjct: 68 QTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLA 107
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 63/227 (27%), Positives = 92/227 (40%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGG 61
D + +G GF+ FA M + + L ST + + ATPK++
Sbjct: 151 DPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN------------ 198
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G Y++ A Y P+ P Y S I V L Q T E+L++
Sbjct: 199 VGVQQQYVTKAV-YPVT-VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKA 256
Query: 122 FSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQ-VAID-SATPLDD 178
FS+ G ++ V +P +G+G+V F A+ V R ++ GQQ V I S P D
Sbjct: 257 FSQLGEVIYVKIPAT---KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQD 313
Query: 179 AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSL-DFDDWGYGMGSGRP 224
+Q N + GYG Y YG+ D + YG G G P
Sbjct: 314 GWVTQADP-NQWNGYYGYGQGYDAYA--YGATQDPSVYAYG-GYGYP 356
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 99 RIGK---KIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKRTG-HRGFGFVTFAEEVV 152
++GK +IFVG LP ++LR YF FGR++ +V KRTG +G+GFV+F
Sbjct: 9 KVGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTA 68
Query: 153 ADRV-SRRSHEICGQQVAIDSA 173
+++ + + H + G + I +
Sbjct: 69 LEKIENEQKHILEGNYLNIQKS 90
>UNIPROTKB|Q32P59 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
Uniprot:Q32P59
Length = 111
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/90 (32%), Positives = 52/90 (57%)
Query: 93 RGESSQR--IGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVT 146
RG + R IG+ + FV ++P A + +LR +F++FG + VP K TG H+G G++
Sbjct: 7 RGAMALRTNIGRPVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHKGMGWIH 66
Query: 147 FA-EEVVADRVSRRSHEICGQQVAIDSATP 175
F+ EE + + + + +H I G ++ + P
Sbjct: 67 FSSEEELHNALQQENHVIDGVKLHVQPQRP 96
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 46/132 (34%), Positives = 58/132 (43%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSR- 158
K+FVG L + L +FS FG I +V V K T RGFGF+TF A R
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG-GPMRTYGRM-YGSLDFDD- 214
+ G+Q+ +D A G S A FG G G R G YG+ +D
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGARGRGYSRGGGDQGYGNGRYDSR 118
Query: 215 ---WGYGMGSGR 223
+GYG G GR
Sbjct: 119 PGGYGYGYGYGR 130
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 44 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 101
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 162 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 219
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 220 DGYGSGR-GFGDG-YNGY 235
Score = 130 (50.8 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 126
Query: 211 D 211
D
Sbjct: 127 D 127
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 45/137 (32%), Positives = 60/137 (43%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSR 158
KK+FVG L + DL +FS+FG + ++ K++G RGFGFV F AD+ +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAV 157
Query: 159 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 217
+ H I G +V + A P +D A GG GG R G G D G
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIHAGGG---GARAARGGRGGG-RGRGGGGGGGGRDQNGL 213
Query: 218 GMGSGRPSRGDWRYRPY 234
G G G Y Y
Sbjct: 214 AKGGGGGGGGYNSYGGY 230
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 55 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 112
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 113 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 172
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 173 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 230
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 231 DGYGSGR-GFGDG-YNGY 246
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 137
Query: 211 D 211
D
Sbjct: 138 D 138
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 211 D 211
D
Sbjct: 139 D 139
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 211 D 211
D
Sbjct: 139 D 139
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 211 D 211
D
Sbjct: 139 D 139
>UNIPROTKB|K7EJM5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000473118 Uniprot:K7EJM5
Length = 201
Score = 127 (49.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 195
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 160 KVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/130 (32%), Positives = 57/130 (43%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHR---GFGFVTFAEEVVADRVSRR 159
K+FVG L + L +FS FG I +V V K R GFGF+TF A R
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 160 SH--EICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDD--- 214
++ + G+Q+ +D A G S A G+G + YGS +D
Sbjct: 67 TNGESLDGRQIHVDHA------GKSARGTRGGAFEAHGHGYSRGRGHQSYGSSRYDSLPG 120
Query: 215 -WGYGMGSGR 223
+GYG G GR
Sbjct: 121 GYGYGYGYGR 130
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 131 (51.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + + V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPS--QNFMMNAAE-TFGGYGGPMRTYGRMYGSLDFD 213
+ R H++ G+ V + A +D+ + F+ E T Y +R Y YG ++
Sbjct: 73 NARPHKVDGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHY---LRDYSEQYGKIEVI 129
Query: 214 DWGYGMGSGRPSRG 227
+ GSG+ RG
Sbjct: 130 EIMTDRGSGK-KRG 142
Score = 121 (47.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 56/224 (25%), Positives = 91/224 (40%)
Query: 2 PKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
PK+ IG +TF + D E+L + G T V P R G +++
Sbjct: 7 PKEPEQLRKLFIGGLTFETTD--ESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYAT 64
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+A ++A + G P R E S + KIFVG + ++ LR Y
Sbjct: 65 VEEVDAAMNARP-HKVDGRVV---EPERAVSR-EDSHSLTVKIFVGGIKEDTEEHYLRDY 119
Query: 122 FSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDD 178
++G+I +++ + +G RGF FVTF + D++ R + + A
Sbjct: 120 SEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNCVRKAL---- 175
Query: 179 AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSG 222
S+ M +A+ + G G YGR S +D + G G G
Sbjct: 176 ---SKQEMASASSSQRGRSGSGNGYGR---SSSYDSYNNGGGGG 213
>UNIPROTKB|Q9GZT3 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
CTD:81892 eggNOG:NOG291073 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 EMBL:AY860853 EMBL:AJ272055 EMBL:AF253980
EMBL:AF271779 EMBL:BC017895 IPI:IPI00009922 RefSeq:NP_001254792.1
RefSeq:NP_001254793.1 RefSeq:NP_112487.1 UniGene:Hs.655105
ProteinModelPortal:Q9GZT3 SMR:Q9GZT3 IntAct:Q9GZT3 STRING:Q9GZT3
PhosphoSite:Q9GZT3 DMDM:74762723 PaxDb:Q9GZT3 PeptideAtlas:Q9GZT3
PRIDE:Q9GZT3 DNASU:81892 Ensembl:ENST00000557342 GeneID:81892
KEGG:hsa:81892 UCSC:uc001xue.4 GeneCards:GC14P078175
HGNC:HGNC:20495 HPA:HPA020291 MIM:610211 neXtProt:NX_Q9GZT3
PharmGKB:PA134892132 InParanoid:Q9GZT3 PhylomeDB:Q9GZT3
ChiTaRS:SLIRP GenomeRNAi:81892 NextBio:72246 ArrayExpress:Q9GZT3
Bgee:Q9GZT3 CleanEx:HS_C14orf156 Genevestigator:Q9GZT3
GermOnline:ENSG00000119705 Uniprot:Q9GZT3
Length = 109
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 93 RGESSQR--IGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVT 146
RG ++ R I + + FV R+P A + L+ +F++FG + +P K TG HRG G+V
Sbjct: 7 RGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQ 66
Query: 147 FA-EEVVADRVSRRSHEICGQQVAIDSATP 175
F+ EE + + + + +H I G +V + + P
Sbjct: 67 FSSEEGLRNALQQENHIIDGVKVQVHTRRP 96
>RGD|1585290 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1585290 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473982 CTD:81892
GeneTree:ENSGT00390000008624 OrthoDB:EOG4Z62Q4 IPI:IPI00365864
RefSeq:NP_001102977.1 UniGene:Rn.65910 Ensembl:ENSRNOT00000016479
GeneID:688717 KEGG:rno:688717 UCSC:RGD:1585290 NextBio:737107
Uniprot:D4A4W6
Length = 111
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 99 RIGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFA-EEVVA 153
R G+ I F+ ++P A + +LR +F++FG + VP K TG HRG G+V F+ +E +
Sbjct: 15 RTGRPIAFIRKIPWTAASSELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQ 74
Query: 154 DRVSRRSHEICGQQVAIDSATP 175
+ + H I G ++ + P
Sbjct: 75 NALQEEHHIIDGVEIHVQPQKP 96
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/108 (31%), Positives = 54/108 (50%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFAEEVV 152
S + + K+FVG L L++ F+ FG + + V + TG RGFGFV+F+ E
Sbjct: 29 SLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDS 88
Query: 153 ADRVSRR--SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGG 198
A+ + E+ G+Q+ ++ AT A P +F +GG GG
Sbjct: 89 ANNAIKEMDGKELNGRQIRVNLATERSSA-PRSSF--GGGGGYGGGGG 133
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 129 (50.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 45/138 (32%), Positives = 68/138 (49%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 91
Query: 157 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 209
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 92 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 149
Query: 210 LDFDDWGYGMGSGRPSRG 227
++ + GSG+ RG
Sbjct: 150 IEVIEIMTDRGSGK-KRG 166
Score = 126 (49.4 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 56/209 (26%), Positives = 88/209 (42%)
Query: 2 PKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
PK+ IG ++F + D E+L + G T V P R G +++
Sbjct: 26 PKEPEQLRKLFIGGLSFETTD--ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 83
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG-----KKIFVGRLPQEATAE 116
+A ++A + G P R E SQR G KKIFVG + ++
Sbjct: 84 VEEVDAAMNARP-HKVDGRVV---EPKRAVSR-EDSQRPGAHLTVKKIFVGGIKEDTEEH 138
Query: 117 DLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDS 172
LR YF ++G+I +++ + +G RGF FVTF + D+ V ++ H + G +
Sbjct: 139 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 198
Query: 173 ATPLDD---AGPSQNFMMNAAETFGGYGG 198
A + A SQ + GG GG
Sbjct: 199 ALSKQEMASASSSQRGRSGSGNFGGGRGG 227
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 58/198 (29%), Positives = 87/198 (43%)
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 103
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADRVS-RR 159
+FVG + ++ LR YF +G+I +++ +++G RGFGFVTF + D++ ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQK 173
Query: 160 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 216
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 217 YGMGSGRPSRGDWRYRPY 234
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADR-VS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 210
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 211 D 211
D
Sbjct: 139 D 139
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 127 (49.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 43/134 (32%), Positives = 66/134 (49%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRVS 157
K+F+G L + T E LR +F ++G + D V P RGFGFVT+A EEV A ++
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AMN 66
Query: 158 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETFGGYGGP---MRTYGRMYGSLDFD 213
R H++ G+ V A +D+ P + + + F G +R Y YG ++
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSRRPGAH--LTVKKIFVGEDTEEHHLRDYFEQYGKIEVI 124
Query: 214 DWGYGMGSGRPSRG 227
+ GSG+ RG
Sbjct: 125 EIMTDRGSGK-KRG 137
Score = 114 (45.2 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 56/207 (27%), Positives = 90/207 (43%)
Query: 13 IGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA 72
IG ++F + D E+L + G T V P R G +++ +A ++A
Sbjct: 11 IGGLSFKTTD--ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 73 TRYAALGAPTLYDHPGSFYGRGESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGR 127
+ G P R E S+R G KKIFVG +E LR YF ++G+
Sbjct: 69 P-HKVDGRVV---EPKRAVSR-EDSRRPGAHLTVKKIFVGEDTEE---HHLRDYFEQYGK 120
Query: 128 I--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDD-AGPS 182
I +++ + +G RGF FVTF + D+ V ++ H + G + A + A S
Sbjct: 121 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS 180
Query: 183 QNFMMNAAETFGGYGGPMRTYGRMYGS 209
+ + ++ GYGG + YGS
Sbjct: 181 SSQRGRSGQSGRGYGGSSSSSS--YGS 205
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 107 (42.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 40/149 (26%), Positives = 63/149 (42%)
Query: 95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKRT-GHRGFGFVT 146
E SQR G KK+ VG + ++ LR YF +G+ ++++ + + RGF FVT
Sbjct: 90 EKSQRPGAPLTMKKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVT 149
Query: 147 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDD---AGPSQNFMMNAAETFGGYGGPMRT 202
F + D+ V ++ H + G + A + A SQ + GG GG +
Sbjct: 150 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQERASASSSQRGRSGSGNFGGGRGGGFGS 209
Query: 203 YGRMYGSLDF---DDWGYGMGSGRPSRGD 228
+F D+G G G GD
Sbjct: 210 NDNFGSGGNFCGHGDFGGSHGGGGYGGGD 238
Score = 64 (27.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRAT-PKEDDFRP 53
+D +K RG GF+ + + + V+ M H++GG V R + E RP
Sbjct: 43 RDPNTKRSRGFGFVPYTTVEEVDATMNARPHKVGGRVVGPKRVSCGMEKSQRP 95
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 129 (50.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFA-EE 150
ESS G + + LP +A DLR F RFG + D+Y+P+ TG RGFGFV + E
Sbjct: 42 ESSGPSG--LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAE 99
Query: 151 VVADRVSRRSHEICG-QQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 205
A+ + R +H++ G +++AI A + P + M T G +G RT R
Sbjct: 100 DAAEAMKRMNHKVIGGREIAIVFAEE-NRKTPQE--MRTTNGTSGRHGDYKRTSHR 152
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 125 (49.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFG 143
PG+ +G + + KIFVG LP T LR+YF FG I + V ++TG RG+G
Sbjct: 21 PGAMHGSQKDTTFT--KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYG 78
Query: 144 FVTFAEEVVADRVSRRSH-EICGQQVAIDSA 173
FVT A+ A+R + + I G++ ++ A
Sbjct: 79 FVTMADRAAAERACKDPNPNIDGRKANVNLA 109
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 113 (44.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 41/120 (34%), Positives = 55/120 (45%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TGH-RGFGFVTFAEEVVADRV--S 157
K+F+G L T + LR FSR+G I + V K T RGFGFV FA E AD +
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 158 RRSHEICGQQVAIDSAT--PLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDW 215
+ E G+ + +D A+ P G Q + GGY G G G+L + W
Sbjct: 63 MNNQEFDGRIIRVDKASERPAARNGGFQGRGGYNSPADGGYRG-----GGAGGTLPYLPW 117
>UNIPROTKB|I3LKV0 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000008624 OMA:SNELREH Ensembl:ENSSSCT00000031620
Uniprot:I3LKV0
Length = 102
Score = 113 (44.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 100 IGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFA-EEVVAD 154
+G+ + FV ++P A + +LR +F++FG I VP K TG HRG G++ F+ EE + +
Sbjct: 7 VGRPVAFVRKIPWTAASNELREHFAQFGHIRKCIVPFDKETGFHRGMGWIQFSSEEELHN 66
Query: 155 RVSRRSHEICGQQVAIDS 172
+ + +H I G ++ + +
Sbjct: 67 VLQQENHVIDGVKLHVQA 84
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 128 (50.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTGHRGFGFVTFAEEVVADRVSRRS 160
K++ V +P DLR+ F +FG+ILDV + G +GFGFVTF ADR +
Sbjct: 121 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 180
Query: 161 HE--ICGQQVAIDSAT 174
H + G+++ +++AT
Sbjct: 181 HGTVVEGRKIEVNNAT 196
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 128 (50.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 35/99 (35%), Positives = 52/99 (52%)
Query: 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKR 136
G P PG+ +G + + KIFVG LP T LR+YF FG I + V ++
Sbjct: 13 GFPRPLAAPGAMHGSQKDTTFT--KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ 70
Query: 137 TGH-RGFGFVTFAEEVVADRVSRRSHEIC-GQQVAIDSA 173
TG RG+GFVT A+ A+R + + I G++ ++ A
Sbjct: 71 TGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 109
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 130 (50.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 44/136 (32%), Positives = 68/136 (50%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSR 158
+K+F+G L E T E LR +F ++G + D V + T H RGFGFVT+A D +
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD--AA 71
Query: 159 RSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 211
RSH++ G+ V A +D+ P + + + F GG +R Y + YG ++
Sbjct: 72 RSHKVDGRVVEPKRAVSREDSQRPGAH--LTVRKIFVGGIKEDTEEHHLRDYFKQYGKIE 129
Query: 212 FDDWGYGMGSGRPSRG 227
+ GSG+ RG
Sbjct: 130 VIEIMTDRGSGK-KRG 144
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 129 (50.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRVSR 158
KKIFVG L T ED+++YF +FG++ + ++ R FGFVTF E + ++V
Sbjct: 20 KKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCE 79
Query: 159 -RSHEICGQQVAIDSATPLDDAGPS 182
HEI + V A P + P+
Sbjct: 80 IHFHEINNKMVECKKAQPKEVMSPT 104
>MGI|MGI:1916394 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=IGI] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1916394 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
HOGENOM:HOG000276232 CTD:81892 eggNOG:NOG291073
GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 ChiTaRS:SLIRP EMBL:AJ293625 EMBL:AK007699
EMBL:BC100567 IPI:IPI00318935 IPI:IPI00462115 RefSeq:NP_081234.2
UniGene:Mm.355701 ProteinModelPortal:Q9D8T7 SMR:Q9D8T7
STRING:Q9D8T7 PhosphoSite:Q9D8T7 PaxDb:Q9D8T7 PRIDE:Q9D8T7
Ensembl:ENSMUST00000160488 Ensembl:ENSMUST00000161023 GeneID:380773
KEGG:mmu:380773 UCSC:uc007oje.2 InParanoid:Q9D8T7 NextBio:401221
Bgee:Q9D8T7 CleanEx:MM_1810035L17RIK Genevestigator:Q9D8T7
GermOnline:ENSMUSG00000021040 Uniprot:Q9D8T7
Length = 112
Score = 112 (44.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 93 RGESSQR--IGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVT 146
+G S+ R G+ I FV ++P A A +LR +F++FG + VP K TG HRG G+V
Sbjct: 7 KGLSALRSSTGRPIAFVRKIPWTAAASELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQ 66
Query: 147 FA-EEVVADRVSRRSHEICGQQVAIDS 172
F+ +E + + + + H I G ++ + +
Sbjct: 67 FSSQEELQNALQQEHHIIDGVKIHVQA 93
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 43/139 (30%), Positives = 64/139 (46%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKRTGH-RGFGFVTFA-EEVVADRV-S 157
+ FVG L + L+ FS++G ++D + + TG RGFGFVTFA +E + + +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 158 RRSHEICGQQVAIDSA-TPLDDAGPS-----QNFMMNAAETFGG-YGGPMRTYG--RM-- 206
++ G+ + ++ A + D G + E GG YGG YG R
Sbjct: 67 MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSGG 126
Query: 207 ---YGSLDFDDWGYGMGSG 222
YGS D GYG G G
Sbjct: 127 GGGYGSRDGGGGGYGGGGG 145
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 129 (50.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 45/138 (32%), Positives = 68/138 (49%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 209
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 210 LDFDDWGYGMGSGRPSRG 227
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
WARNING: HSPs involving 297 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 234 234 0.00087 113 3 11 22 0.41 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 547
No. of states in DFA: 592 (63 KB)
Total size of DFA: 176 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.69u 0.23s 18.92t Elapsed: 00:00:01
Total cpu time: 18.73u 0.23s 18.96t Elapsed: 00:00:01
Start: Sat May 11 03:23:20 2013 End: Sat May 11 03:23:21 2013
WARNINGS ISSUED: 2