BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026724
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 92/224 (41%), Gaps = 66/224 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 109 -----AHPKMVTR--------------------------TKKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 177
F +FG I D + K+T HRGFGFVTF E V D+V HEI + V A P +
Sbjct: 138 FEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
Query: 178 DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGS 221
P+ N A+T R G +D+ +G+G+
Sbjct: 198 VMLPA-----NLAKT------------RAAGRSAYDNIMWGLGT 224
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + + E LR YF R+G I + V P RGFGFVTF++ D+V ++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 159 RSHEICGQQVAIDSATP 175
+HE+ G++V A P
Sbjct: 90 GTHELDGKKVDPKVAFP 106
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 49/215 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDV---YVPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSATPLD 177
F+R+G++ +V Y ++ RGFGF++F EE + V+ + + G+QV I A P D
Sbjct: 116 FNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD 175
Query: 178 DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 212
+G + +G G +G + ++
Sbjct: 176 GSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINM 210
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG---HRGFGFVTFAEEVVADRVSRR 159
K+FVG L E T E+L RYF RFG I+D V K RGFGFVTFA+ + V +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 160 -SHEICGQQVAIDSATP 175
H + G+ + P
Sbjct: 68 GPHTLDGRTIDPKPCNP 84
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 32/171 (18%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ ++ ++ + H + V V RA +E+ + G G N S
Sbjct: 47 RGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREE------QQVSGRTGNLNTSRS 100
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ G Y + KKIFVG LP T E+ R+YF +G + D
Sbjct: 101 SG---------------GDAYNKT-------KKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Query: 131 V---YVPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLD 177
V Y RGFGFV+F E D V ++ H++ G+QV + A P D
Sbjct: 139 VAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTGH-RGFGFVTFAEEVVADRVSRR 159
K+FVG + E + LR +F+ +G + V K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 160 SHEICGQQVAIDSA 173
H I ++V + A
Sbjct: 67 KHSIDTREVDVKRA 80
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 52/177 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF + V +M H L G + RA P+E+
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREE------------- 242
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q K+FVG +P + T E+ R +F
Sbjct: 243 -----------------------------------QEKTAKMFVGGVPGDCTEEEFRNFF 267
Query: 123 SRFGRILD--VYVPKRTGH-RGFGFVTFAEE-VVADRVSRRSHEICGQQVAIDSATP 175
++FGR+LD + + K TG RGFGFVT+ E V +S+ I G+ V + ATP
Sbjct: 268 NQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG---HRGFGFVTFAEEVVADRVSRR 159
K+F+G L E T + LR YF +FG +LD V + + RGFGF+TF + V +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 160 SHEICGQQVAIDSATPLDD 178
H + G+ + A P ++
Sbjct: 224 EHHLDGKIIDPKRAIPREE 242
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSH 59
M KD G RG GF+T+ + +VE M + + G V V RATPK R H
Sbjct: 280 MDKDTGRP--RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQH 337
Query: 60 GGYGAYNAY 68
G +G N Y
Sbjct: 338 GYHGNANPY 346
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 73/180 (40%), Gaps = 49/180 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRT---- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L ED+++Y
Sbjct: 110 ----------------------------------------KKIFVGGLSANTVVEDVKQY 129
Query: 122 FSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 177
F +FG++ D + K T HRGFGFVTF E V ++V HEI + V A P +
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA 148
G SQ K+F+G L + + + LR YFS+FG I + V P RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 149 EEVVADRV-SRRSHEICGQQVAIDSATP 175
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 73/180 (40%), Gaps = 49/180 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRT---- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L ED+++Y
Sbjct: 110 ----------------------------------------KKIFVGGLSANTVVEDVKQY 129
Query: 122 FSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 177
F +FG++ D + K T HRGFGFVTF E V ++V HEI + V A P +
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA 148
G SQ K+F+G L + + + LR YFS+FG I + V P RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 149 EEVVADRV-SRRSHEICGQQVAIDSATP 175
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 49/185 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKQY 128
Query: 122 FSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 177
F +FG++ D + K T HRGFGFVTF E + ++V HEI + V A P +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 178 DAGPS 182
P+
Sbjct: 189 VMSPT 193
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ +AE+LR++FS++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPK--PFRAFAFVTFADDQVAQSLCGEDL 248
Query: 162 EICGQQVAIDSATP 175
I G V + +A P
Sbjct: 249 IIKGVSVHVSTAEP 262
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVADRVSRRS 160
+ V LP + T +DL+ YFS FG ++ V V K +TGH +GFGFV FA+ +V +
Sbjct: 107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQR 166
Query: 161 HEICG 165
H I G
Sbjct: 167 HMIDG 171
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 49/185 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKHY 128
Query: 122 FSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 177
F +FG++ D + K T HRGFGFVTF E + ++V HEI + V A P +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 178 DAGPS 182
P+
Sbjct: 189 VMSPT 193
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 49/185 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKHY 128
Query: 122 FSRFGRILDVYV--PKRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 177
F +FG++ D + K T HRGFGFVTF E + ++V HEI + V A P +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 178 DAGPS 182
P+
Sbjct: 189 VMSPT 193
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSRR 159
K+F+G L + T E LR YF +FG + + V P RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 160 S-HEICGQQVAIDSATP 175
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TAE+L+++F ++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--PFRAFAFVTFADDKVAQSLCGEDL 248
Query: 162 EICGQQVAIDSATP 175
I G V I +A P
Sbjct: 249 IIKGISVHISNAEP 262
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAGPSQ 183
+V + H I G+ D P P +
Sbjct: 160 KVMSQRHMIDGRWC--DCKLPNSKQSPDE 186
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 37/181 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR-------------- 88
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRG-ESSQRIGKKIFVGRLPQEATAEDLRR 120
G P + +G S KIFVG +P +LR
Sbjct: 89 -----------------GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 121 YFSRFGRILDV---YVPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPL 176
YF +FG + +V Y ++ RGFGF+TF +E D+ V+ H+I G++V + A P
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Query: 177 D 177
D
Sbjct: 192 D 192
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RTGHRGFGFVTFAE-EVVADRVSR 158
K+FVG L T E LR YFS++G ++D + K RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 159 RSHEICGQQVAIDSATP 175
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 11 RGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF SV+ + + H++ G V V RA P++ + G+ +G+
Sbjct: 154 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS-RVVP 212
Query: 70 SAATRYAALGAPT 82
+AA +A PT
Sbjct: 213 NAANGWAGQPPPT 225
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ TA++L+++F+++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP--FRAFAFVTFADDQVAQSLCGEDL 248
Query: 162 EICGQQVAIDSATP 175
I G V I +A P
Sbjct: 249 IIKGISVHISNAEP 262
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQV 159
Query: 155 RVSRRSHEICGQQVAIDSATPLDDAGPSQ 183
+V + H I G+ D P P +
Sbjct: 160 KVMSQRHMIDGRWC--DCKLPNSKQSPDE 186
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A +
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGEDL 248
Query: 162 EICGQQVAIDSATP 175
I G V I +A P
Sbjct: 249 IIKGISVHISNAEP 262
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICG 165
+V + H I G
Sbjct: 160 KVMSQRHMIDG 170
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A +
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGEDL 248
Query: 162 EICGQQVAIDSATP 175
I G V I +A P
Sbjct: 249 IIKGISVHISNAEP 262
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTGH-RGFGFVTFAEEVVAD 154
Q+ I +G LP + T +DL+ YFS FG +L V V K +TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 159
Query: 155 RVSRRSHEICG 165
+V + H I G
Sbjct: 160 KVMSQRHMIDG 170
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 37/181 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR-------------- 88
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRG-ESSQRIGKKIFVGRLPQEATAEDLRR 120
G P + +G S KIFVG +P +LR
Sbjct: 89 -----------------GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131
Query: 121 YFSRFGRILDV---YVPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPL 176
YF +FG + +V Y ++ RGFGF+TF +E D+ V+ H+I G++V + A P
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Query: 177 D 177
D
Sbjct: 192 D 192
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RTGHRGFGFVTFAE-EVVADRVSR 158
K+FVG L T E LR YFS++G ++D + K RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 159 RSHEICGQQVAIDSATP 175
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF SV+ + + H++ G V V RA P++ + G+ +G+ A
Sbjct: 154 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVA-P 212
Query: 70 SAATRYAALGAPTL 83
SAA +A PT
Sbjct: 213 SAANGWAGQPPPTW 226
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD+ + RG GF+ F + V ++ H L G + TP+ +P G
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR--GMQPERSRPREG 100
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+ R E+S+ KIFVG +P +L+ Y
Sbjct: 101 WQQKEP-------------------------RTENSR--SNKIFVGGIPHNCGETELKEY 133
Query: 122 FSRFGRILDV---YVPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 177
F+RFG + +V Y ++ RGFGF+TF +E D+ V+ H+I G++V + A P D
Sbjct: 134 FNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRD 193
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RTGHRGFGFVTFAE-EVVADRVSR 158
K+FVG L T E LR YFS++G ++D + K RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 159 RSHEICGQQVAIDSATP 175
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 11 RGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGA 64
RG GFITF SV+ + + H++ G V V RA P++ + G +G+
Sbjct: 155 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGS 209
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTF-AEEVVADRVSR 158
KIFVG L E + E+++ YF +FG I++V +P +++ +GF F+TF +E+VV D +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 159 RSHEICGQQVAIDSATP 175
+I G++V + ATP
Sbjct: 197 PKQKIAGKEVDVKRATP 213
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSR 158
+K+FVG L E T ++LR +F ++G I + V P+ RGF F+ F D+VS
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 159 RSHEICGQQ 167
I +
Sbjct: 116 ADEHIINSK 124
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47
MP D+ +G FITF S V +L+ ++ G V V RATPK
Sbjct: 167 MPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L EAT E +R YF +FG I + + PK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 158 RRSHEICGQQVAIDSATP 175
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + P RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 159 RSHEICGQQV 168
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+ + V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 177
F +G+I ++ K++G RGFGFVTF + D+ V ++ H I G + A
Sbjct: 120 FEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179
Query: 178 DAGPSQNFMMNAAETFG 194
+ QN N FG
Sbjct: 180 EMQDVQNTRNNRGGNFG 196
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR ++ ++G++ D V P RGFGFVTF+ EV A +
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA-AM 67
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
S R H I G+ V A +++
Sbjct: 68 SARPHTIDGRVVEPKRAVAREES 90
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 47/178 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M T H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATP 175
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A P
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALP 182
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ H++ G+ V A +D+
Sbjct: 73 NTTPHKVDGRVVEPKRAVSREDS 95
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A PK++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+ + V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 177
F +G+I +++ K++G RGF FVTF + D+ V ++ H I G + A
Sbjct: 120 FEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179
Query: 178 DAGPSQNFMMNAAETFG 194
+ QN N FG
Sbjct: 180 EMQDVQNTRNNRGGNFG 196
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR Y+ ++G + D V P RGFGFVTF+ EV A +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA-AM 67
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ R H I G+ V A +++
Sbjct: 68 ATRPHTIDGRVVEPKRAVAREES 90
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + P RGFGFV F E
Sbjct: 91 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEI----CGQQVAI 170
++ H + C +VA+
Sbjct: 242 KKYHNVGLSKCEIKVAM 258
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + P RGFGFV F E
Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 158 RRSHEI----CGQQVAI 170
++ H + C +VA+
Sbjct: 242 KKYHNVGLSKCEIKVAM 258
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVV 152
++QR K+F+G L + T +DL+ YFS+FG ++D + P RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 153 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 197
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRV-S 157
KKIFVG L + E +R YF FG + + +P K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 158 RRSHEI----CGQQVAI 170
++ H + C +VA+
Sbjct: 240 KKYHNVGLSKCEIKVAM 256
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 102 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV- 156
KKIFVG L P+ T E +R YF FG I + + PK RGF F+TF EE +V
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 157 SRRSHEICGQQVAIDSATPLD 177
++ H + G + I A P +
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKE 233
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+FVG L + + +DL+ YF++FG ++D + P RGFGF+ F + ++V +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 159 RSHEICGQQVAIDSATPL 176
+ H + G+ + A +
Sbjct: 130 KEHRLDGRVIDPKKAMAM 147
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVS 157
+KIFVG L T + +R ++S+FG I D+ V P RGFGFVTF+ + D +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQN 184
+R H I G+ V A P DD S++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 49/198 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF+ V+ M H + G TV RA P++D R +S
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVS--- 112
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+++V + ++ T + L Y
Sbjct: 113 ---------------------------------------TKRLYVSGVREDHTEDMLTEY 133
Query: 122 FSRFGRIL--DVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 177
F+++G + ++ + K T RGFGFVTF + D+ V ++SH + G + + D
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKD 193
Query: 178 DAGPSQNFMMNAAETFGG 195
+ +Q M ET GG
Sbjct: 194 EMSKAQ--MNRDRETRGG 209
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 47/178 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ A V++ H++ G V RA P+ +
Sbjct: 50 KDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTE------------ 97
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
GR E+ + KK+FVG + +E DLR Y
Sbjct: 98 -----------------------------IGRPEAGATV-KKLFVGGIKEEMEENDLRDY 127
Query: 122 FSRFGRILD--VYVPKRT-GHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 175
F ++G ++ + V K T RGF FV F + D++ R+H+I G+ + + A P
Sbjct: 128 FKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALP 185
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAE-EVVADRVS 157
+K+F+G L T E L+++F ++G I+DV V PK RGFGF+T++ +V D +
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM-----RTYGRMYGSL 210
R H++ G+ V A P + G + GG M R Y + YG++
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTV 134
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 46/158 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T+ S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ + LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEDHLREY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADRV 156
F ++G+I +++ + +G RGF FVTF + D++
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTF-AEEVVADRVS 157
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+ + + V ++
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 158 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLDF 212
R H++ G+ V A +D+ + GG +R Y YG ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEV 133
Query: 213 DDWGYGMGSGR 223
+ GSG+
Sbjct: 134 IEIMTDRGSGK 144
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQE 185
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 47/177 (26%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAY 65
+K R GF+T+++ + + M + H + G+TV + RA +ED RP GA+
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP---------GAH 94
Query: 66 NAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF 125
KK+FVG L + DL +FS+F
Sbjct: 95 AKV---------------------------------KKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 126 GRI--LDVYVPKRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPLDD 178
G + ++ K++G RGFGFV F AD+ + + H I G +V + A P +D
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEV 151
E+SQ K+F+G L + + LR +F FG + D V P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 152 VADRVSRRS-HEICGQQVAIDSATPLDDA 179
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKED 49
D+ S RG GF+ F + D+ + +V H + G V V +A PKED
Sbjct: 132 DKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 47/178 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ + ++ H++ G V RA P++D P
Sbjct: 64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSP-------- 115
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
NA GA KK+FVG L + + +R Y
Sbjct: 116 ----NA-----------GATV-------------------KKLFVGALKDDHDEQSIRDY 141
Query: 122 FSRFGRILD--VYVPKRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 175
F FG I+D + + K TG RGF FV F + D+V ++ H++ G+ V + A P
Sbjct: 142 FQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALP 199
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRVSR 158
+K+F+G L T E+L+ +F ++G I+DV V P+ RGFGF+T++ + D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 159 -RSHEICGQQVAIDSATPLDD 178
R H+I G+ V A P D
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQD 111
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDD 50
D+ + RG F+ F D V+ +++ H+L G V V +A PK++D
Sbjct: 156 DKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQND 203
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 47/177 (26%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAY 65
+K R GF+T+++ + + M + H + G+TV + RA +ED RP GA+
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP---------GAH 94
Query: 66 NAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF 125
KK+FVG L + DL +FS+F
Sbjct: 95 AKV---------------------------------KKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 126 GRI--LDVYVPKRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPLDD 178
G + ++ K++G RGFGFV F AD+ + + H I G +V + A P +D
Sbjct: 122 GAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEV 151
E+SQ K+F+G L + + LR +F FG + D V P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 152 VADRVSRRS-HEICGQQVAIDSATPLDDA 179
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKED 49
D+ S RG GF+ F S D+ + +V H + G V V +A PKED
Sbjct: 132 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L E T E +++YF FG I ++ +P K RGF FVT+ EE V +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 158 RRSHEICGQQVAIDSATPLD 177
R H+I + I A P +
Sbjct: 171 SRFHQIGTGKCEIKVAQPKE 190
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + + +DL Y SRFG ++D + P RGFGFV F + V D+V
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 197
+ H++ G+ + A L P + + + FGG+G
Sbjct: 87 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG F+T+ + V+ L+ H++G + A PKE
Sbjct: 142 LPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPKE 190
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I ++V +++G RGF FVTF + D+ V ++ H I G + A
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I ++V +++G RGF FVTF + D+ V ++ H I G + A
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I ++V +++G RGF FVTF + D+ V ++ H I G + A
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T + LR +F ++G + D V P+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L E T E +++YF FG I ++ +P K RGF FVT+ EE V +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 158 RRSHEICGQQVAIDSATP 175
R H+I + I +A P
Sbjct: 171 SRFHQIGTGKCEIKAAQP 188
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV-SR 158
K+F+G L + + +DL Y SRFG +LD + P RGFGFV F + V D+V
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 159 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 197
H++ G+ + A L P + + + FGG+G
Sbjct: 87 NEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG F+T+ + V+ L+ H++G + A PKE
Sbjct: 142 LPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPKE 190
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAE-EVVADRVS 157
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A E V ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 158 RRSHEICGQQVAIDSATPLDDA 179
R H++ G+ V A +D+
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS 95
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF +SV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 119
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F+ +G+I +++ +++G RGFGFVTF + D+ V ++ H I G + A
Sbjct: 120 FAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVS 157
+K+F+G L + T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 158 RRSHEICGQQVAIDSATPLDDAG 180
R H I G+ V A +++G
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESG 91
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDA 179
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQE 185
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F +G+I +++ +++G RGFGFVTF + D+ V ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG 180
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFA-EEVVADRVS 157
KK+FVG L E T E +++YF FG I ++ +P K RGF FVT+ EE V +
Sbjct: 119 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
Query: 158 RRSHEICGQQVAIDSATP 175
R H+I + I +A P
Sbjct: 179 SRFHQIGTGKCEIKAAQP 196
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVADRV 156
I K+F+G L + + +DL Y SRFG +LD + P RGFGFV F + V D+V
Sbjct: 32 IRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 91
Query: 157 -SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 197
+ H++ G+ + A L P + + + FGG+G
Sbjct: 92 LETKEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 143
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG F+T+ + V+ L+ H++G + A PKE
Sbjct: 150 LPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 47/187 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 119
Query: 122 FSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 177
F +G+I +++ +++G RGFGFVTF + D+ V ++ H I G + A
Sbjct: 120 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 179
Query: 178 DAGPSQN 184
+ Q+
Sbjct: 180 EMQEVQS 186
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 158 RRSHEICGQQVAIDSATPLDDAG 180
R H I G+ V A +++G
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESG 91
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F ++G+I +++ + +G RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFA--EEVVADRV 156
+K+F+G L E T E LR +F ++G + D V P RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 157 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 211
+ R H++ G+ V A +D+ + GG +R Y YG ++
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 212 FDDWGYGMGSGR 223
+ GSG+
Sbjct: 133 VIEIMTDRGSGK 144
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--PKRTG-H 139
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V + KRTG
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQ 160
Query: 140 RGFGFVTFAEEVVADRVSRRSH 161
+G FV +A ADR R H
Sbjct: 161 QGCCFVKYATSKDADRAIRALH 182
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 91 YGRGESSQRIGK---KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRT--GHRGFGFV 145
Y GE +RIG K+FVG L ++AT +++ F +FG + DVY+ + RG GFV
Sbjct: 198 YADGER-ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFV 256
Query: 146 TFAEEVVA 153
++ + A
Sbjct: 257 KYSSKETA 264
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F +G+I +++ +++G RGFGFVTF + D+ V ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG 180
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 47/176 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRI--LDVYVPKRTGH-RGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 173
F +G+I +++ +++G RGFGFVTF + D+ V ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRTGHRGFGFVTFAEEVVAD-RVS 157
+K+F+G L E T E LR Y+ ++G++ D V P RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 158 RRSHEICGQQVAIDSATPLDDAG 180
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,702,699
Number of Sequences: 539616
Number of extensions: 4336373
Number of successful extensions: 11292
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 420
Number of HSP's that attempted gapping in prelim test: 10200
Number of HSP's gapped (non-prelim): 1284
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)