Query 026724
Match_columns 234
No_of_seqs 382 out of 2208
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.2E-30 1.8E-34 213.2 20.9 131 1-179 139-278 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 3.9E-29 8.4E-34 194.0 14.7 144 1-179 94-241 (321)
3 TIGR01648 hnRNP-R-Q heterogene 99.9 2E-25 4.3E-30 196.0 20.8 128 4-179 175-310 (578)
4 TIGR01645 half-pint poly-U bin 99.9 1.3E-25 2.7E-30 197.7 17.5 142 1-179 139-287 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.6E-25 1.4E-29 186.1 19.2 80 99-178 267-351 (352)
6 KOG0117 Heterogeneous nuclear 99.9 2.2E-24 4.9E-29 177.8 17.8 176 1-181 115-336 (506)
7 TIGR01622 SF-CC1 splicing fact 99.9 5.3E-24 1.1E-28 186.5 16.4 139 1-175 121-265 (457)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.7E-24 1.7E-28 179.6 16.3 129 1-177 35-172 (352)
9 KOG0144 RNA-binding protein CU 99.9 3E-24 6.6E-29 176.3 9.0 134 1-181 66-211 (510)
10 KOG0131 Splicing factor 3b, su 99.9 1.8E-23 3.8E-28 153.8 10.1 133 1-180 41-181 (203)
11 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-22 2.3E-27 182.5 14.8 133 1-179 32-170 (562)
12 KOG0145 RNA-binding protein EL 99.9 4.8E-23 1E-27 159.5 10.6 129 1-177 73-210 (360)
13 KOG4205 RNA-binding protein mu 99.9 2E-22 4.3E-27 164.4 11.6 140 1-182 38-182 (311)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-21 2.8E-26 173.6 17.8 153 5-176 217-375 (509)
15 TIGR01628 PABP-1234 polyadenyl 99.9 5.8E-22 1.3E-26 177.7 14.0 146 2-178 211-366 (562)
16 PLN03134 glycine-rich RNA-bind 99.9 4.9E-21 1.1E-25 141.5 16.2 82 98-179 31-117 (144)
17 KOG0127 Nucleolar protein fibr 99.9 6E-22 1.3E-26 167.1 12.7 156 1-178 37-198 (678)
18 KOG0127 Nucleolar protein fibr 99.9 8.8E-21 1.9E-25 160.1 15.7 177 1-178 149-380 (678)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4.5E-20 9.8E-25 162.2 17.4 155 10-176 312-480 (481)
20 TIGR01648 hnRNP-R-Q heterogene 99.8 8.1E-21 1.8E-25 167.1 12.4 122 1-177 90-223 (578)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 3E-19 6.5E-24 157.0 16.4 131 9-176 36-174 (481)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5.1E-19 1.1E-23 157.1 15.2 155 1-175 327-501 (509)
23 KOG0123 Polyadenylate-binding 99.8 3.7E-19 8.1E-24 150.0 12.5 124 1-181 30-158 (369)
24 KOG0145 RNA-binding protein EL 99.8 3E-18 6.6E-23 133.0 15.9 174 1-176 159-358 (360)
25 KOG0124 Polypyrimidine tract-b 99.8 4.2E-19 9.1E-24 143.7 11.0 139 2-177 146-291 (544)
26 KOG0110 RNA-binding protein (R 99.8 9.4E-19 2E-23 152.1 10.5 130 9-177 558-694 (725)
27 TIGR01622 SF-CC1 splicing fact 99.8 1.9E-17 4E-22 145.2 17.1 173 1-175 218-447 (457)
28 KOG0147 Transcriptional coacti 99.8 1.8E-18 3.9E-23 146.6 7.3 142 1-176 211-358 (549)
29 KOG0109 RNA-binding protein LA 99.7 1.4E-17 3.1E-22 131.0 8.8 117 10-181 35-155 (346)
30 KOG0105 Alternative splicing f 99.7 4.3E-17 9.3E-22 120.6 10.7 77 99-175 4-82 (241)
31 KOG0107 Alternative splicing f 99.7 2.3E-16 4.9E-21 115.8 13.1 79 100-180 9-89 (195)
32 KOG0149 Predicted RNA-binding 99.7 4E-17 8.7E-22 125.2 8.1 77 98-174 9-89 (247)
33 KOG0125 Ataxin 2-binding prote 99.7 3.9E-16 8.4E-21 124.9 10.0 79 98-176 93-174 (376)
34 TIGR01659 sex-lethal sex-letha 99.7 8.8E-16 1.9E-20 128.9 11.6 80 97-176 103-187 (346)
35 PLN03120 nucleic acid binding 99.6 1.7E-15 3.7E-20 119.9 10.9 76 101-176 4-80 (260)
36 KOG0122 Translation initiation 99.6 3.9E-15 8.5E-20 114.8 11.1 79 98-176 186-269 (270)
37 PF00076 RRM_1: RNA recognitio 99.6 2.2E-15 4.9E-20 97.5 8.1 66 104-169 1-70 (70)
38 KOG0121 Nuclear cap-binding pr 99.6 2.5E-15 5.5E-20 104.8 7.1 81 98-178 33-118 (153)
39 KOG4211 Splicing factor hnRNP- 99.6 8.1E-14 1.8E-18 117.2 14.2 134 4-174 42-180 (510)
40 PLN03213 repressor of silencin 99.6 1.6E-14 3.4E-19 121.5 9.6 78 98-176 7-88 (759)
41 PLN03121 nucleic acid binding 99.6 3.1E-14 6.8E-19 111.0 10.3 75 100-174 4-79 (243)
42 KOG0123 Polyadenylate-binding 99.6 2.2E-14 4.8E-19 121.2 10.0 126 10-176 115-246 (369)
43 KOG4207 Predicted splicing fac 99.5 3.2E-14 6.9E-19 107.2 9.4 81 95-175 7-92 (256)
44 PF14259 RRM_6: RNA recognitio 99.5 5.9E-14 1.3E-18 91.0 8.0 66 104-169 1-70 (70)
45 KOG0113 U1 small nuclear ribon 99.5 4.5E-13 9.8E-18 106.2 13.5 82 98-179 98-184 (335)
46 KOG0146 RNA-binding protein ET 99.5 2.1E-13 4.5E-18 106.7 11.0 83 98-180 282-369 (371)
47 TIGR01645 half-pint poly-U bin 99.5 1.2E-13 2.5E-18 122.5 10.0 78 98-175 104-186 (612)
48 KOG0111 Cyclophilin-type pepti 99.5 6.3E-14 1.4E-18 106.6 5.6 81 98-178 7-92 (298)
49 KOG0130 RNA-binding protein RB 99.5 2.3E-13 5E-18 95.9 7.3 83 96-178 67-154 (170)
50 smart00362 RRM_2 RNA recogniti 99.4 1E-12 2.2E-17 84.7 8.9 69 103-171 1-72 (72)
51 KOG0114 Predicted RNA-binding 99.4 1.2E-12 2.5E-17 88.2 8.7 80 98-177 15-96 (124)
52 KOG0147 Transcriptional coacti 99.4 2.5E-12 5.5E-17 109.6 12.3 170 1-173 310-525 (549)
53 KOG4206 Spliceosomal protein s 99.4 6.3E-12 1.4E-16 96.4 13.3 160 5-174 46-220 (221)
54 KOG0116 RasGAP SH3 binding pro 99.4 2.6E-12 5.5E-17 109.2 12.2 79 101-179 288-370 (419)
55 KOG0131 Splicing factor 3b, su 99.4 6.5E-13 1.4E-17 98.3 6.5 78 98-175 6-88 (203)
56 KOG0148 Apoptosis-promoting RN 99.4 1.2E-12 2.6E-17 102.6 7.5 77 101-177 62-143 (321)
57 KOG0126 Predicted RNA-binding 99.4 6.4E-14 1.4E-18 103.6 0.4 76 98-173 32-112 (219)
58 KOG0105 Alternative splicing f 99.4 7E-11 1.5E-15 87.9 15.8 124 10-159 44-169 (241)
59 KOG0109 RNA-binding protein LA 99.4 1E-12 2.2E-17 104.0 5.9 70 102-176 3-74 (346)
60 KOG0117 Heterogeneous nuclear 99.4 8.5E-12 1.9E-16 104.0 11.2 75 99-173 81-161 (506)
61 KOG4212 RNA-binding protein hn 99.4 1.3E-11 2.7E-16 102.8 12.0 79 99-177 42-125 (608)
62 smart00360 RRM RNA recognition 99.3 6E-12 1.3E-16 80.7 7.8 66 106-171 1-71 (71)
63 COG0724 RNA-binding proteins ( 99.3 7.6E-12 1.6E-16 101.7 9.7 75 101-175 115-194 (306)
64 KOG0144 RNA-binding protein CU 99.3 3.9E-12 8.6E-17 105.5 7.7 82 98-179 31-120 (510)
65 KOG0110 RNA-binding protein (R 99.3 1.4E-11 3.1E-16 107.9 10.9 160 14-174 424-596 (725)
66 cd00590 RRM RRM (RNA recogniti 99.3 2.2E-11 4.9E-16 78.7 9.4 70 103-172 1-74 (74)
67 KOG0108 mRNA cleavage and poly 99.3 5.6E-12 1.2E-16 107.8 8.0 79 102-180 19-102 (435)
68 KOG0106 Alternative splicing f 99.3 7.1E-12 1.5E-16 97.0 6.1 132 10-174 34-169 (216)
69 KOG0153 Predicted RNA-binding 99.3 2.6E-11 5.5E-16 98.2 9.0 80 95-177 222-304 (377)
70 KOG1457 RNA binding protein (c 99.3 9E-11 1.9E-15 89.8 11.3 153 5-158 71-266 (284)
71 KOG4205 RNA-binding protein mu 99.3 6.5E-12 1.4E-16 103.0 5.3 81 100-180 5-89 (311)
72 PF13893 RRM_5: RNA recognitio 99.2 6.1E-11 1.3E-15 73.3 7.8 54 118-173 1-56 (56)
73 KOG0146 RNA-binding protein ET 99.2 2E-11 4.4E-16 95.6 5.5 81 100-180 18-105 (371)
74 KOG4212 RNA-binding protein hn 99.2 4.6E-10 1E-14 93.6 13.1 170 3-173 79-291 (608)
75 KOG4211 Splicing factor hnRNP- 99.2 2.5E-09 5.5E-14 90.5 16.4 71 101-172 281-354 (510)
76 KOG0415 Predicted peptidyl pro 99.2 5.4E-11 1.2E-15 96.6 6.2 79 98-176 236-319 (479)
77 smart00361 RRM_1 RNA recogniti 99.1 1.9E-10 4.2E-15 74.4 7.2 56 115-170 2-69 (70)
78 KOG1190 Polypyrimidine tract-b 99.1 1.9E-09 4.1E-14 89.3 13.5 149 12-175 336-490 (492)
79 KOG0124 Polypyrimidine tract-b 99.1 9.3E-11 2E-15 95.7 4.7 75 100-174 112-191 (544)
80 PLN03134 glycine-rich RNA-bind 99.1 2.1E-10 4.5E-15 84.8 5.9 49 1-49 66-116 (144)
81 KOG4206 Spliceosomal protein s 99.1 7.8E-10 1.7E-14 85.0 8.4 79 100-178 8-92 (221)
82 KOG0132 RNA polymerase II C-te 99.1 4.9E-10 1.1E-14 99.2 8.1 80 98-180 418-499 (894)
83 KOG0120 Splicing factor U2AF, 99.0 1.1E-09 2.4E-14 94.5 8.1 150 1-174 321-490 (500)
84 KOG4661 Hsp27-ERE-TATA-binding 99.0 5.1E-09 1.1E-13 90.2 10.6 80 98-177 402-486 (940)
85 KOG0120 Splicing factor U2AF, 99.0 1.6E-09 3.4E-14 93.5 7.6 146 7-177 219-370 (500)
86 KOG0149 Predicted RNA-binding 98.9 5.8E-10 1.3E-14 86.1 2.9 46 1-46 44-90 (247)
87 KOG4210 Nuclear localization s 98.9 5.2E-09 1.1E-13 85.6 8.3 137 4-179 123-267 (285)
88 KOG0226 RNA-binding proteins [ 98.9 2.3E-09 5E-14 83.6 5.6 128 8-177 137-271 (290)
89 KOG4208 Nucleolar RNA-binding 98.9 9.3E-09 2E-13 78.0 8.0 79 98-176 46-130 (214)
90 smart00361 RRM_1 RNA recogniti 98.9 3.8E-09 8.2E-14 68.3 4.8 40 2-41 26-69 (70)
91 KOG4207 Predicted splicing fac 98.8 2.4E-09 5.1E-14 81.2 3.6 45 1-45 45-91 (256)
92 KOG0106 Alternative splicing f 98.8 6.4E-09 1.4E-13 80.7 5.4 71 102-177 2-74 (216)
93 KOG1365 RNA-binding protein Fu 98.8 2.2E-09 4.8E-14 88.2 1.4 152 6-174 201-360 (508)
94 KOG0533 RRM motif-containing p 98.8 4.1E-08 8.8E-13 77.8 8.3 80 98-177 80-163 (243)
95 COG0724 RNA-binding proteins ( 98.7 6.9E-08 1.5E-12 78.3 9.8 108 1-134 147-258 (306)
96 KOG0111 Cyclophilin-type pepti 98.7 8.1E-09 1.7E-13 79.0 3.5 49 1-49 42-92 (298)
97 KOG4209 Splicing factor RNPS1, 98.7 1.1E-07 2.4E-12 75.4 9.3 79 98-176 98-180 (231)
98 KOG1548 Transcription elongati 98.7 4.9E-07 1.1E-11 73.7 13.0 157 8-176 180-352 (382)
99 KOG1457 RNA binding protein (c 98.7 2.5E-07 5.3E-12 71.2 9.6 84 98-181 31-123 (284)
100 KOG1456 Heterogeneous nuclear 98.6 2.5E-06 5.5E-11 70.4 14.0 124 11-177 67-200 (494)
101 KOG0113 U1 small nuclear ribon 98.6 1.2E-07 2.7E-12 75.7 6.1 56 1-56 133-190 (335)
102 KOG4454 RNA binding protein (R 98.5 3.8E-08 8.2E-13 75.4 2.3 75 98-173 6-84 (267)
103 KOG0151 Predicted splicing reg 98.5 2.5E-07 5.4E-12 81.8 7.3 78 98-175 171-256 (877)
104 KOG4208 Nucleolar RNA-binding 98.5 1.2E-07 2.7E-12 72.0 4.1 46 2-47 83-130 (214)
105 KOG1190 Polypyrimidine tract-b 98.5 3.8E-06 8.2E-11 70.1 13.0 72 101-174 297-371 (492)
106 KOG1456 Heterogeneous nuclear 98.4 7.5E-06 1.6E-10 67.6 13.3 143 11-165 325-474 (494)
107 KOG0126 Predicted RNA-binding 98.4 5.7E-08 1.2E-12 72.4 0.9 47 1-47 67-115 (219)
108 KOG4660 Protein Mei2, essentia 98.4 2.3E-07 4.9E-12 80.0 4.6 70 98-169 72-143 (549)
109 KOG1548 Transcription elongati 98.4 1.6E-06 3.5E-11 70.8 8.2 78 98-175 131-220 (382)
110 PF13893 RRM_5: RNA recognitio 98.4 9.6E-07 2.1E-11 54.3 5.3 34 11-44 21-56 (56)
111 KOG1365 RNA-binding protein Fu 98.4 2.9E-06 6.3E-11 70.2 9.2 134 7-173 98-240 (508)
112 KOG1995 Conserved Zn-finger pr 98.3 6.7E-06 1.5E-10 67.6 9.5 81 98-178 63-156 (351)
113 KOG0108 mRNA cleavage and poly 98.3 9.2E-07 2E-11 76.1 4.6 49 1-49 50-100 (435)
114 smart00360 RRM RNA recognition 98.3 1.6E-06 3.5E-11 54.9 4.7 41 2-42 29-71 (71)
115 PF14259 RRM_6: RNA recognitio 98.3 1.3E-06 2.8E-11 56.2 4.2 38 2-40 31-70 (70)
116 PF00076 RRM_1: RNA recognitio 98.2 1.2E-06 2.7E-11 56.0 3.8 35 6-40 34-70 (70)
117 KOG0128 RNA-binding protein SA 98.2 1.2E-06 2.5E-11 79.1 4.7 106 6-175 704-814 (881)
118 KOG0129 Predicted RNA-binding 98.2 2.2E-05 4.9E-10 67.4 12.1 75 98-172 367-450 (520)
119 KOG0125 Ataxin 2-binding prote 98.2 9.1E-07 2E-11 71.7 3.4 41 8-48 133-175 (376)
120 KOG4307 RNA binding protein RB 98.2 6.6E-06 1.4E-10 72.9 8.1 159 3-171 344-509 (944)
121 KOG0130 RNA-binding protein RB 98.2 1.9E-06 4E-11 61.3 3.5 47 3-49 106-154 (170)
122 PF11608 Limkain-b1: Limkain b 98.1 1.6E-05 3.4E-10 52.0 7.2 68 102-176 3-77 (90)
123 PF04059 RRM_2: RNA recognitio 98.1 2.8E-05 6E-10 53.1 8.8 74 102-175 2-86 (97)
124 KOG0107 Alternative splicing f 98.1 2.2E-06 4.8E-11 63.7 3.0 41 9-49 45-87 (195)
125 PLN03120 nucleic acid binding 98.0 7.1E-06 1.5E-10 65.6 5.1 44 1-47 36-80 (260)
126 KOG0226 RNA-binding proteins [ 98.0 2E-06 4.2E-11 67.5 1.6 48 1-48 222-271 (290)
127 PF08777 RRM_3: RNA binding mo 98.0 9.6E-06 2.1E-10 56.5 4.5 68 102-172 2-76 (105)
128 KOG0121 Nuclear cap-binding pr 98.0 9E-06 1.9E-10 57.4 4.0 44 3-46 70-115 (153)
129 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.7E-05 1E-09 46.1 5.7 52 102-157 2-53 (53)
130 smart00362 RRM_2 RNA recogniti 97.9 2.4E-05 5.3E-10 49.5 4.7 35 8-42 36-72 (72)
131 KOG0415 Predicted peptidyl pro 97.9 1.1E-05 2.3E-10 66.4 3.1 49 1-49 271-321 (479)
132 KOG4849 mRNA cleavage factor I 97.8 9E-05 2E-09 60.9 7.0 71 100-170 79-156 (498)
133 PLN03213 repressor of silencin 97.7 4.4E-05 9.6E-10 65.4 4.1 40 5-46 44-87 (759)
134 PLN03121 nucleic acid binding 97.7 6.8E-05 1.5E-09 59.2 4.7 43 1-46 37-80 (243)
135 cd00590 RRM RRM (RNA recogniti 97.7 0.00011 2.4E-09 46.7 5.0 39 4-43 34-74 (74)
136 KOG2193 IGF-II mRNA-binding pr 97.6 5.8E-06 1.3E-10 69.3 -2.2 117 11-177 37-158 (584)
137 KOG0115 RNA-binding protein p5 97.5 0.00019 4.1E-09 56.7 5.7 73 102-174 32-112 (275)
138 KOG4454 RNA binding protein (R 97.5 2E-05 4.4E-10 60.6 0.3 94 1-157 41-142 (267)
139 KOG0129 Predicted RNA-binding 97.5 0.00046 1E-08 59.6 8.1 60 98-158 256-324 (520)
140 KOG0112 Large RNA-binding prot 97.5 0.0001 2.2E-09 67.3 4.2 116 8-176 410-531 (975)
141 KOG4307 RNA binding protein RB 97.4 0.00051 1.1E-08 61.4 7.6 70 103-172 869-943 (944)
142 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00083 1.8E-08 46.2 7.1 74 100-174 5-90 (100)
143 COG5175 MOT2 Transcriptional r 97.4 0.00045 9.7E-09 56.7 6.5 77 99-175 112-202 (480)
144 KOG1855 Predicted RNA-binding 97.3 0.0012 2.7E-08 55.8 7.8 60 98-157 228-303 (484)
145 PF04059 RRM_2: RNA recognitio 97.3 0.00047 1E-08 47.1 4.2 46 1-46 35-86 (97)
146 KOG4209 Splicing factor RNPS1, 97.2 0.00038 8.1E-09 55.5 3.8 46 1-46 133-179 (231)
147 KOG0128 RNA-binding protein SA 97.1 1.5E-05 3.3E-10 72.1 -5.7 107 13-157 616-726 (881)
148 KOG0114 Predicted RNA-binding 97.1 0.0012 2.5E-08 45.1 4.4 42 6-47 52-95 (124)
149 PF08952 DUF1866: Domain of un 97.0 0.0051 1.1E-07 45.0 7.4 74 99-177 25-108 (146)
150 KOG4676 Splicing factor, argin 96.9 0.0011 2.4E-08 55.4 4.0 71 102-172 8-85 (479)
151 KOG2314 Translation initiation 96.7 0.003 6.5E-08 55.3 5.0 73 99-171 56-139 (698)
152 PF07292 NID: Nmi/IFP 35 domai 96.6 0.0046 1E-07 41.3 4.8 70 14-122 1-73 (88)
153 KOG3152 TBP-binding protein, a 96.6 0.0015 3.4E-08 51.6 2.5 68 100-167 73-157 (278)
154 KOG1996 mRNA splicing factor [ 96.6 0.0077 1.7E-07 48.7 6.4 59 115-173 300-364 (378)
155 PF08675 RNA_bind: RNA binding 96.4 0.027 5.9E-07 37.0 7.1 52 100-157 8-59 (87)
156 KOG2202 U2 snRNP splicing fact 96.4 0.0019 4.2E-08 51.1 2.0 58 117-174 84-146 (260)
157 PF10309 DUF2414: Protein of u 96.4 0.035 7.5E-07 34.5 7.0 54 101-159 5-61 (62)
158 KOG0153 Predicted RNA-binding 96.2 0.006 1.3E-07 50.4 3.8 37 10-46 263-302 (377)
159 KOG2416 Acinus (induces apopto 96.2 0.0067 1.4E-07 53.5 4.2 76 97-175 440-521 (718)
160 KOG4661 Hsp27-ERE-TATA-binding 96.0 0.0074 1.6E-07 53.1 3.9 45 2-46 438-484 (940)
161 KOG2193 IGF-II mRNA-binding pr 95.9 0.0059 1.3E-07 51.8 2.7 74 102-180 2-80 (584)
162 PF15023 DUF4523: Protein of u 95.9 0.06 1.3E-06 39.1 7.3 74 98-175 83-161 (166)
163 KOG0132 RNA polymerase II C-te 95.8 0.012 2.6E-07 53.5 4.2 42 9-50 455-498 (894)
164 KOG2135 Proteins containing th 94.7 0.026 5.7E-07 48.6 2.8 72 102-176 373-446 (526)
165 PF11608 Limkain-b1: Limkain b 94.7 0.069 1.5E-06 35.2 4.1 36 10-45 38-75 (90)
166 KOG2591 c-Mpl binding protein, 94.7 0.11 2.3E-06 45.9 6.5 69 98-171 172-247 (684)
167 KOG4676 Splicing factor, argin 94.6 0.017 3.8E-07 48.5 1.6 55 102-158 152-207 (479)
168 KOG0112 Large RNA-binding prot 94.5 0.0097 2.1E-07 54.9 -0.3 76 98-173 369-448 (975)
169 KOG4285 Mitotic phosphoprotein 93.9 0.45 9.8E-06 39.0 8.1 72 101-176 197-270 (350)
170 KOG1995 Conserved Zn-finger pr 93.6 0.051 1.1E-06 45.3 2.3 47 2-48 107-155 (351)
171 KOG2068 MOT2 transcription fac 93.5 0.027 5.8E-07 46.6 0.6 77 100-176 76-163 (327)
172 KOG2314 Translation initiation 93.0 0.11 2.4E-06 45.9 3.6 42 1-43 96-140 (698)
173 PRK11634 ATP-dependent RNA hel 92.3 4.6 0.0001 37.4 13.3 69 102-176 487-563 (629)
174 KOG4210 Nuclear localization s 92.1 0.07 1.5E-06 44.0 1.2 50 1-50 217-267 (285)
175 KOG0116 RasGAP SH3 binding pro 91.6 0.21 4.6E-06 43.3 3.6 39 8-46 327-366 (419)
176 PF04847 Calcipressin: Calcipr 91.3 0.94 2E-05 34.8 6.6 61 114-177 8-72 (184)
177 KOG4660 Protein Mei2, essentia 91.3 0.33 7.2E-06 42.9 4.5 142 4-175 105-249 (549)
178 KOG2253 U1 snRNP complex, subu 91.2 0.17 3.8E-06 45.5 2.8 69 98-172 37-107 (668)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 90.4 0.35 7.7E-06 36.9 3.5 75 100-174 6-96 (176)
180 KOG0921 Dosage compensation co 90.4 0.54 1.2E-05 44.4 5.2 17 7-23 898-914 (1282)
181 KOG0533 RRM motif-containing p 89.4 0.8 1.7E-05 36.8 4.9 44 7-50 120-165 (243)
182 PF14111 DUF4283: Domain of un 89.4 0.24 5.1E-06 36.6 1.8 84 9-134 53-138 (153)
183 PF08952 DUF1866: Domain of un 88.5 0.78 1.7E-05 33.7 3.9 34 13-46 72-106 (146)
184 KOG2202 U2 snRNP splicing fact 87.1 0.4 8.7E-06 38.3 1.9 37 9-45 108-146 (260)
185 KOG2891 Surface glycoprotein [ 85.9 1.7 3.6E-05 35.4 4.7 34 101-134 149-194 (445)
186 PF07576 BRAP2: BRCA1-associat 85.6 10 0.00022 26.6 8.9 63 101-163 13-79 (110)
187 KOG4574 RNA-binding protein (c 85.4 0.6 1.3E-05 43.5 2.3 76 103-181 300-379 (1007)
188 PF03880 DbpA: DbpA RNA bindin 82.9 10 0.00022 24.3 7.1 65 103-173 2-74 (74)
189 PF03468 XS: XS domain; Inter 82.3 1.5 3.3E-05 31.0 2.9 48 103-150 10-66 (116)
190 PF05172 Nup35_RRM: Nup53/35/4 81.0 3.7 7.9E-05 28.2 4.3 36 10-45 53-90 (100)
191 PF07530 PRE_C2HC: Associated 79.8 6.1 0.00013 25.0 4.7 60 116-176 2-65 (68)
192 smart00596 PRE_C2HC PRE_C2HC d 79.3 5.2 0.00011 25.3 4.2 59 116-175 2-64 (69)
193 PF14605 Nup35_RRM_2: Nup53/35 76.3 2.7 5.8E-05 25.2 2.2 19 10-28 35-53 (53)
194 PF02714 DUF221: Domain of unk 75.4 3 6.5E-05 34.9 3.2 37 14-50 1-37 (325)
195 PF02714 DUF221: Domain of unk 71.6 4.3 9.4E-05 34.0 3.2 35 143-177 1-35 (325)
196 KOG4410 5-formyltetrahydrofola 71.5 13 0.00028 30.5 5.6 47 101-150 330-377 (396)
197 KOG0804 Cytoplasmic Zn-finger 71.3 20 0.00044 31.4 7.0 64 101-164 74-141 (493)
198 COG5175 MOT2 Transcriptional r 71.2 5.2 0.00011 33.5 3.4 31 15-45 169-201 (480)
199 KOG4849 mRNA cleavage factor I 70.2 6 0.00013 33.3 3.6 38 4-41 117-156 (498)
200 PF11767 SET_assoc: Histone ly 68.5 8.6 0.00019 24.2 3.3 26 15-40 37-64 (66)
201 PF15513 DUF4651: Domain of un 67.3 15 0.00033 22.8 4.0 19 116-134 9-27 (62)
202 KOG0151 Predicted splicing reg 67.1 4.9 0.00011 37.0 2.7 38 8-45 216-255 (877)
203 PRK14548 50S ribosomal protein 65.8 31 0.00067 22.8 5.7 55 103-157 22-78 (84)
204 PF08777 RRM_3: RNA binding mo 65.4 9 0.0002 26.5 3.2 31 13-43 39-76 (105)
205 KOG4483 Uncharacterized conser 59.2 26 0.00057 30.2 5.4 58 100-161 390-448 (528)
206 CHL00123 rps6 ribosomal protei 56.6 60 0.0013 22.0 6.9 65 102-168 9-90 (97)
207 PF09707 Cas_Cas2CT1978: CRISP 55.7 29 0.00063 23.1 4.2 48 101-148 25-72 (86)
208 KOG4008 rRNA processing protei 54.8 13 0.00028 29.6 2.8 35 98-132 37-71 (261)
209 PF11767 SET_assoc: Histone ly 54.7 52 0.0011 20.7 6.2 53 112-170 11-65 (66)
210 PF07292 NID: Nmi/IFP 35 domai 53.6 24 0.00053 23.6 3.6 29 143-171 1-32 (88)
211 KOG4019 Calcineurin-mediated s 53.0 16 0.00034 28.0 2.8 75 101-178 10-92 (193)
212 PF10567 Nab6_mRNP_bdg: RNA-re 50.7 26 0.00056 29.0 3.9 75 100-174 14-106 (309)
213 KOG2591 c-Mpl binding protein, 50.4 8.4 0.00018 34.6 1.2 28 15-42 216-247 (684)
214 TIGR03636 L23_arch archaeal ri 45.5 83 0.0018 20.4 5.5 55 103-157 15-71 (77)
215 PRK11558 putative ssRNA endonu 44.3 43 0.00092 22.9 3.6 50 101-150 27-76 (97)
216 KOG4285 Mitotic phosphoprotein 42.4 35 0.00075 28.4 3.5 47 2-48 223-271 (350)
217 COG4371 Predicted membrane pro 42.3 51 0.0011 26.7 4.3 6 109-114 10-15 (334)
218 PF11411 DNA_ligase_IV: DNA li 39.4 24 0.00051 19.3 1.5 16 111-126 19-34 (36)
219 PF08206 OB_RNB: Ribonuclease 38.2 24 0.00053 21.3 1.6 36 9-45 6-44 (58)
220 KOG2135 Proteins containing th 36.6 21 0.00045 31.5 1.5 35 13-47 411-446 (526)
221 PRK15464 cold shock-like prote 35.2 20 0.00044 22.8 0.9 12 9-20 14-25 (70)
222 PF14893 PNMA: PNMA 34.4 51 0.0011 28.0 3.5 50 100-150 17-72 (331)
223 PRK14998 cold shock-like prote 33.9 25 0.00054 22.5 1.2 12 9-20 11-22 (73)
224 PRK09937 stationary phase/star 33.5 26 0.00056 22.5 1.3 11 9-19 11-21 (74)
225 PF03108 DBD_Tnp_Mut: MuDR fam 33.0 47 0.001 20.5 2.4 29 146-174 9-37 (67)
226 PRK15463 cold shock-like prote 32.9 24 0.00052 22.4 1.0 12 9-20 14-25 (70)
227 PRK09507 cspE cold shock prote 31.7 25 0.00055 22.2 1.0 12 9-20 13-24 (69)
228 PRK10943 cold shock-like prote 31.2 25 0.00055 22.2 0.9 12 9-20 13-24 (69)
229 TIGR01873 cas_CT1978 CRISPR-as 30.4 99 0.0022 20.6 3.6 48 101-149 25-74 (87)
230 COG0030 KsgA Dimethyladenosine 30.4 83 0.0018 25.7 3.9 33 102-134 96-128 (259)
231 PF13046 DUF3906: Protein of u 29.4 65 0.0014 20.1 2.4 33 113-145 30-63 (64)
232 TIGR02381 cspD cold shock doma 29.3 34 0.00074 21.5 1.3 12 9-20 11-22 (68)
233 PF03439 Spt5-NGN: Early trans 29.3 79 0.0017 20.7 3.1 22 9-30 42-63 (84)
234 KOG2068 MOT2 transcription fac 29.3 15 0.00033 30.8 -0.4 34 14-47 128-163 (327)
235 KOG1996 mRNA splicing factor [ 29.2 43 0.00093 27.8 2.1 23 14-39 332-354 (378)
236 PRK09890 cold shock protein Cs 28.9 30 0.00065 21.9 1.0 12 9-20 14-25 (70)
237 PTZ00191 60S ribosomal protein 28.9 2.4E+02 0.0052 20.8 5.8 53 103-155 83-137 (145)
238 PRK10354 RNA chaperone/anti-te 28.7 30 0.00066 21.8 1.0 11 9-19 14-24 (70)
239 PRK10590 ATP-dependent RNA hel 28.0 4.2E+02 0.0092 23.4 8.6 8 140-147 342-349 (456)
240 KOG2318 Uncharacterized conser 24.9 1.3E+02 0.0029 27.4 4.5 37 98-134 171-212 (650)
241 COG1512 Beta-propeller domains 23.9 1.3E+02 0.0028 24.7 4.0 8 108-115 119-126 (271)
242 PRK12448 dihydroxy-acid dehydr 23.7 1.3E+02 0.0029 27.8 4.4 37 140-177 448-484 (615)
243 cd04458 CSP_CDS Cold-Shock Pro 23.6 48 0.001 20.3 1.2 11 10-20 11-21 (65)
244 PF00313 CSD: 'Cold-shock' DNA 23.6 65 0.0014 19.7 1.8 12 10-21 11-22 (66)
245 PF00398 RrnaAD: Ribosomal RNA 23.5 71 0.0015 25.9 2.5 31 101-131 97-129 (262)
246 TIGR00110 ilvD dihydroxy-acid 23.4 1.4E+02 0.003 27.2 4.4 38 139-177 382-419 (535)
247 KOG4213 RNA-binding protein La 23.4 1.1E+02 0.0025 23.4 3.3 52 102-158 112-168 (205)
248 KOG3424 40S ribosomal protein 23.1 2.4E+02 0.0052 20.1 4.6 43 112-155 34-84 (132)
249 PF10281 Ish1: Putative stress 22.6 86 0.0019 17.0 2.0 17 112-128 3-19 (38)
250 KOG2416 Acinus (induces apopto 22.1 1E+02 0.0022 28.4 3.2 35 11-45 481-520 (718)
251 COG1278 CspC Cold shock protei 22.0 39 0.00085 21.3 0.5 37 9-45 11-54 (67)
252 PF15407 Spo7_2_N: Sporulation 21.9 30 0.00065 21.8 -0.0 26 98-123 24-49 (67)
253 PRK00911 dihydroxy-acid dehydr 21.8 1.6E+02 0.0034 27.0 4.4 38 139-177 397-434 (552)
254 KOG2295 C2H2 Zn-finger protein 21.4 19 0.00041 32.4 -1.3 58 100-157 230-293 (648)
255 COG0129 IlvD Dihydroxyacid deh 21.1 1.7E+02 0.0036 26.9 4.4 38 139-177 414-451 (575)
256 PF04847 Calcipressin: Calcipr 21.1 1.6E+02 0.0034 22.7 3.8 36 12-47 32-71 (184)
257 cd00027 BRCT Breast Cancer Sup 21.0 1.8E+02 0.0038 16.9 3.5 27 102-128 2-28 (72)
258 KOG4365 Uncharacterized conser 20.9 19 0.0004 31.5 -1.4 72 102-174 4-80 (572)
259 PHA01632 hypothetical protein 20.1 1.2E+02 0.0026 18.3 2.3 19 106-124 21-39 (64)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=8.2e-30 Score=213.22 Aligned_cols=131 Identities=22% Similarity=0.353 Sum_probs=112.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|+++||||||+|+++++|++||+ ++..|.+++|+|.++.+...
T Consensus 139 i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~----------------------------- 189 (346)
T TIGR01659 139 IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE----------------------------- 189 (346)
T ss_pred EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc-----------------------------
Confidence 46899999999999999999999999994 68899999999998764321
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~ 155 (234)
....++|||+|||+++|+++|+++|++||.|+.|.|+ +.++ +++||||+|.+.++|++
T Consensus 190 -------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 190 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQE 250 (346)
T ss_pred -------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 1235689999999999999999999999999999998 4466 89999999999999999
Q ss_pred HHh--cCCccCC--eEeEEEeCCCCCCC
Q 026724 156 VSR--RSHEICG--QQVAIDSATPLDDA 179 (234)
Q Consensus 156 A~~--~~~~~~g--~~i~v~~a~~~~~~ 179 (234)
||+ +...+.+ ++|+|.++......
T Consensus 251 Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 251 AISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHhCCCccCCCceeEEEEECCccccc
Confidence 984 6666655 78999999876543
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.9e-29 Score=193.95 Aligned_cols=144 Identities=26% Similarity=0.405 Sum_probs=119.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
||||..|++|||||||.|.+.++|+.|| +++..|.+|.|+-.||..|........ ..+.
T Consensus 94 virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~-----------------ltfd-- 154 (321)
T KOG0148|consen 94 VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP-----------------LTFD-- 154 (321)
T ss_pred EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC-----------------ccHH--
Confidence 6899999999999999999999999999 589999999999999987752111000 0000
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
..-.+...+.++|||+|++..+||++|++.|++||.|.+|+|.++ +||+||.|++.|+|..||.
T Consensus 155 -------------eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 155 -------------EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred -------------HHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHH
Confidence 000112567899999999999999999999999999999999986 7999999999999999984
Q ss_pred --cCCccCCeEeEEEeCCCCCCC
Q 026724 159 --RSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 159 --~~~~~~g~~i~v~~a~~~~~~ 179 (234)
|+.+|.|+.|++.|.+.....
T Consensus 219 ~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HhcCceeCceEEEEeccccCCCC
Confidence 778999999999998865543
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=2e-25 Score=196.05 Aligned_cols=128 Identities=25% Similarity=0.381 Sum_probs=107.0
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHhc----CceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~~----~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
+..+++++|||||+|++.++|.+|+.. ...|.|+.|.|.|+.++......
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------------------- 228 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------------------- 228 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc--------------------------
Confidence 345678999999999999999999942 34789999999999765432110
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhc--CceeEEEeecCCCCcceEEEEEcChHHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKRTGHRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 157 (234)
.....++|||+||++++++++|+++|++| |.|+.|.++ ++||||+|++.++|++|+
T Consensus 229 -----------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 229 -----------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred -----------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHH
Confidence 02345789999999999999999999999 999999875 579999999999999998
Q ss_pred --hcCCccCCeEeEEEeCCCCCCC
Q 026724 158 --RRSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 158 --~~~~~~~g~~i~v~~a~~~~~~ 179 (234)
+++.+|+|+.|+|.|++|+...
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 4778999999999999987543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.3e-25 Score=197.69 Aligned_cols=142 Identities=18% Similarity=0.393 Sum_probs=114.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|+++||||||+|.+.++|++||. ++..|+|+.|+|.++..........
T Consensus 139 I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~------------------------ 194 (612)
T TIGR01645 139 MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPII------------------------ 194 (612)
T ss_pred EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccccc------------------------
Confidence 46899999999999999999999999994 7889999999998543221100000
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~ 155 (234)
+ .........++|||+|||+++++++|+++|+.||.|.+|+|+ +.++ ++|||||+|.+.++|.+
T Consensus 195 ------~-------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 195 ------D-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ------c-------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 0 000012245799999999999999999999999999999998 3456 89999999999999999
Q ss_pred HH--hcCCccCCeEeEEEeCCCCCCC
Q 026724 156 VS--RRSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 156 A~--~~~~~~~g~~i~v~~a~~~~~~ 179 (234)
|| +|+..|+|+.|+|.++.+....
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 98 4777999999999999875443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=6.6e-25 Score=186.11 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
..+.+|||+|||+++++++|+++|++||.|.+|+|+ +.++ ++|||||+|.+.++|.+|| +++..|+|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 344579999999999999999999999999999999 4477 9999999999999999998 4788999999999999
Q ss_pred CCCCC
Q 026724 174 TPLDD 178 (234)
Q Consensus 174 ~~~~~ 178 (234)
.++..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 88764
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=177.80 Aligned_cols=176 Identities=22% Similarity=0.336 Sum_probs=121.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCcee-CCcEEEEeeccCCCC----------CC----------------
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHEL-GGSTVVVDRATPKED----------DF---------------- 51 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i-~gr~i~v~~a~~~~~----------~~---------------- 51 (234)
|++|+.+|.+||||||+|.+.++|++||. |+++| .|+.|.|+.+..+.. ..
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvd 194 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVD 194 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeE
Confidence 57899999999999999999999999994 67766 689999987654322 10
Q ss_pred -----CCCccCCCCCCCCCCccchhhhhhh----hcCCCCccCCCC------CCCCCCCCCCCCCCEEEEeCCCCCCCHH
Q 026724 52 -----RPVGRMSHGGYGAYNAYISAATRYA----ALGAPTLYDHPG------SFYGRGESSQRIGKKIFVGRLPQEATAE 116 (234)
Q Consensus 52 -----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 116 (234)
.+....-+.++......+..+.... ....-.++.... ......+......+.|||.||+.++||+
T Consensus 195 Vivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE 274 (506)
T KOG0117|consen 195 VIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEE 274 (506)
T ss_pred EEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHH
Confidence 0011111111111111122111111 111112222221 1222233345567889999999999999
Q ss_pred HHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCCCCCCCC
Q 026724 117 DLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPLDDAGP 181 (234)
Q Consensus 117 ~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~~~~~~~ 181 (234)
.|+++|++||.|+.|+.++ -||||+|.+.++|.+|+. |+.+|+|..|+|.+|+|..+..-
T Consensus 275 ~lk~~F~~~G~veRVkk~r-----DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKPR-----DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred HHHHHHHhccceEEeeccc-----ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 9999999999999998864 599999999999999994 78899999999999999765543
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=5.3e-24 Score=186.52 Aligned_cols=139 Identities=24% Similarity=0.440 Sum_probs=113.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
|++|+.|+++||||||+|.+.++|++|| +++..|.|++|.|..+............
T Consensus 121 i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~----------------------- 177 (457)
T TIGR01622 121 CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAAT----------------------- 177 (457)
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhccc-----------------------
Confidence 5689999999999999999999999999 5788999999999876433221100000
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A 156 (234)
.. ........+|||+|||..+++++|+++|++||.|..|.|+ ..++ ++|||||+|.+.++|.+|
T Consensus 178 --~~-----------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 178 --HQ-----------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred --cc-----------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 00 0001236899999999999999999999999999999988 4455 899999999999999999
Q ss_pred H--hcCCccCCeEeEEEeCCC
Q 026724 157 S--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 157 ~--~~~~~~~g~~i~v~~a~~ 175 (234)
+ +++..|.|+.|.|.++..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 8 477899999999999874
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=7.7e-24 Score=179.59 Aligned_cols=129 Identities=26% Similarity=0.469 Sum_probs=111.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.||+|||||||+|.+.++|++||+ ++..|.|++|.|.++.+...
T Consensus 35 i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~----------------------------- 85 (352)
T TIGR01661 35 LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD----------------------------- 85 (352)
T ss_pred EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc-----------------------------
Confidence 46899999999999999999999999994 78899999999999865432
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~ 155 (234)
....++|||+|||..+++++|+++|++||.|..+.++ ..++ ++|||||+|++.++|+.
T Consensus 86 -------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 86 -------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred -------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 2235689999999999999999999999999999888 3355 89999999999999999
Q ss_pred HH--hcCCccCC--eEeEEEeCCCCC
Q 026724 156 VS--RRSHEICG--QQVAIDSATPLD 177 (234)
Q Consensus 156 A~--~~~~~~~g--~~i~v~~a~~~~ 177 (234)
|| +++..+.+ .+|.|.++....
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCC
Confidence 98 46666666 678999987654
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3e-24 Score=176.34 Aligned_cols=134 Identities=26% Similarity=0.458 Sum_probs=112.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhc---CceeCC--cEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhh
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVD---THELGG--STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY 75 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~---~~~i~g--r~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
||||+.|+.|||||||+|.+.++|++|+.. ...|.| .+|.|++|....+.
T Consensus 66 l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er------------------------- 120 (510)
T KOG0144|consen 66 LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER------------------------- 120 (510)
T ss_pred eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc-------------------------
Confidence 689999999999999999999999999954 446655 67888888754332
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec-CCC-CcceEEEEEcChHHH
Q 026724 76 AALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTG-HRGFGFVTFAEEVVA 153 (234)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~-~~~-~~g~afV~f~~~~~a 153 (234)
....++|||+-|+..+||.+++++|++||.|++|.|++ ..+ +||||||.|.+.+.|
T Consensus 121 ----------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A 178 (510)
T KOG0144|consen 121 ----------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMA 178 (510)
T ss_pred ----------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHH
Confidence 22467899999999999999999999999999999994 445 999999999999999
Q ss_pred HHHHhcCC---ccCC--eEeEEEeCCCCCCCCC
Q 026724 154 DRVSRRSH---EICG--QQVAIDSATPLDDAGP 181 (234)
Q Consensus 154 ~~A~~~~~---~~~g--~~i~v~~a~~~~~~~~ 181 (234)
..||+.++ .+.| .+|.|+||.++.++..
T Consensus 179 ~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 179 VAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 99985432 5555 6899999999887653
No 10
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1.8e-23 Score=153.84 Aligned_cols=133 Identities=26% Similarity=0.540 Sum_probs=114.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
||+|+.|...+|||||+|.++|||+-|+ +++..|.|++|+|..+......
T Consensus 41 iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~n---------------------------- 92 (203)
T KOG0131|consen 41 IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN---------------------------- 92 (203)
T ss_pred cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccccc----------------------------
Confidence 6899999999999999999999999999 4888999999999988722111
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEE-Eee--cCCC-CcceEEEEEcChHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVP--KRTG-HRGFGFVTFAEEVVAD 154 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~--~~~~-~~g~afV~f~~~~~a~ 154 (234)
...+.+|||+||.++++|..|.+.|+.||.+... .++ .+++ +++|+||.|++.+.+.
T Consensus 93 -------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 93 -------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred -------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 2345789999999999999999999999998663 444 5667 9999999999999999
Q ss_pred HHH--hcCCccCCeEeEEEeCCCCCCCC
Q 026724 155 RVS--RRSHEICGQQVAIDSATPLDDAG 180 (234)
Q Consensus 155 ~A~--~~~~~~~g~~i~v~~a~~~~~~~ 180 (234)
+|+ +++..++.++|.|.++..+...+
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCCc
Confidence 998 47889999999999998776544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=1.1e-22 Score=182.48 Aligned_cols=133 Identities=23% Similarity=0.376 Sum_probs=112.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|++|+|||||+|.+.++|++||. +...|.|++|+|.|+.......
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~--------------------------- 84 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR--------------------------- 84 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc---------------------------
Confidence 46899999999999999999999999995 5678999999999875321110
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A 156 (234)
.....+|||+|||.++++++|+++|+.||.|.+|.|+ ..++ ++|||||+|.+.++|.+|
T Consensus 85 -------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 85 -------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred -------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHH
Confidence 1124579999999999999999999999999999998 4556 999999999999999999
Q ss_pred Hh--cCCccCCeEeEEEeCCCCCCC
Q 026724 157 SR--RSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 157 ~~--~~~~~~g~~i~v~~a~~~~~~ 179 (234)
+. ++..+.++.|.|....++.++
T Consensus 146 i~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 146 IQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred HHHhcccEecCceEEEecccccccc
Confidence 84 677999999999877665544
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.8e-23 Score=159.45 Aligned_cols=129 Identities=25% Similarity=0.474 Sum_probs=113.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|+||+.||.|-||+||.|.+++||++||. |+-.|..+.|+|.+|.|...
T Consensus 73 LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~----------------------------- 123 (360)
T KOG0145|consen 73 LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD----------------------------- 123 (360)
T ss_pred eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh-----------------------------
Confidence 68999999999999999999999999994 78899999999999987544
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~ 155 (234)
......|||.+||..+|..+|+++|++||.|..-+|. ..++ ++|.+||.|+..++|+.
T Consensus 124 -------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 124 -------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred -------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHH
Confidence 3456789999999999999999999999999777766 6678 99999999999999999
Q ss_pred HH--hcCCccCC--eEeEEEeCCCCC
Q 026724 156 VS--RRSHEICG--QQVAIDSATPLD 177 (234)
Q Consensus 156 A~--~~~~~~~g--~~i~v~~a~~~~ 177 (234)
|| ++++.-.| .+|.|+||....
T Consensus 185 AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 185 AIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHhccCCCCCCCCCCeEEEecCCcc
Confidence 98 47775554 589999997553
No 13
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=2e-22 Score=164.45 Aligned_cols=140 Identities=38% Similarity=0.678 Sum_probs=123.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
+.+|+.|+++|||+||+|++++.+.++|. ..|.|+++.|.++.+.++........
T Consensus 38 vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~------------------------ 93 (311)
T KOG4205|consen 38 VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGR------------------------ 93 (311)
T ss_pred EeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccccc------------------------
Confidence 46899999999999999999999999996 48899999999999998876654332
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A 156 (234)
.....+|||++||.++++++|+++|++||.|..+.++ ..+. +++|+||+|.+++++.++
T Consensus 94 ------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 94 ------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 2257899999999999999999999999999888888 4555 999999999999999999
Q ss_pred H-hcCCccCCeEeEEEeCCCCCCCCCC
Q 026724 157 S-RRSHEICGQQVAIDSATPLDDAGPS 182 (234)
Q Consensus 157 ~-~~~~~~~g~~i~v~~a~~~~~~~~~ 182 (234)
+ +..|.|+++.++|+.|.|++...+.
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cccceeeecCceeeEeeccchhhcccc
Confidence 8 5789999999999999999876643
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.3e-21 Score=173.61 Aligned_cols=153 Identities=13% Similarity=0.227 Sum_probs=109.3
Q ss_pred CCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCc
Q 026724 5 QGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (234)
..+.+++|||||+|.+.++|++|| +++..|.|++|.|.................... .... ....
T Consensus 217 ~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~ 282 (509)
T TIGR01642 217 VNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKN---PDDN-----------AKNV 282 (509)
T ss_pred EEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCC---Cccc-----------cccc
Confidence 345678999999999999999999 478899999999976543321110000000000 0000 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--h
Q 026724 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--R 158 (234)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~ 158 (234)
..............+|||+|||+.+++++|+++|+.||.|..+.|+ ..++ ++|||||+|.+.++|..|| +
T Consensus 283 -----~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 283 -----EKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred -----ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 0000001113356799999999999999999999999999999988 4467 9999999999999999998 4
Q ss_pred cCCccCCeEeEEEeCCCC
Q 026724 159 RSHEICGQQVAIDSATPL 176 (234)
Q Consensus 159 ~~~~~~g~~i~v~~a~~~ 176 (234)
++..|.|+.|.|.++...
T Consensus 358 ~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 358 NGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CCCEECCeEEEEEECccC
Confidence 788999999999998654
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=5.8e-22 Score=177.72 Aligned_cols=146 Identities=27% Similarity=0.481 Sum_probs=113.7
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeC----CcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhh
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELG----GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY 75 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~----gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
++| .+++++|||||+|++.++|.+|++ ++..|. ++.|.|.++..+......... ..
T Consensus 211 ~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~-----------------~~ 272 (562)
T TIGR01628 211 MKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRR-----------------KF 272 (562)
T ss_pred EEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHh-----------------hH
Confidence 345 468999999999999999999994 677888 999999888665432111000 00
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHH
Q 026724 76 AALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVA 153 (234)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a 153 (234)
.... ..........+|||+||++.+++++|+++|++||.|++|.|+ +.++ ++|||||+|.+.++|
T Consensus 273 ~~~~-------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 273 EELQ-------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred Hhhh-------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHH
Confidence 0000 000013356789999999999999999999999999999998 5566 999999999999999
Q ss_pred HHHHh--cCCccCCeEeEEEeCCCCCC
Q 026724 154 DRVSR--RSHEICGQQVAIDSATPLDD 178 (234)
Q Consensus 154 ~~A~~--~~~~~~g~~i~v~~a~~~~~ 178 (234)
.+|+. ++..|.|++|.|.+|..+..
T Consensus 340 ~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 340 NRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred HHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99984 67799999999999987653
No 16
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=4.9e-21 Score=141.50 Aligned_cols=82 Identities=32% Similarity=0.589 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
...+++|||+|||++++|++|+++|++||.|.+|.|+ +.++ +++||||+|.+.++|++||. +++.|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999998 4566 99999999999999999994 67899999999999
Q ss_pred CCCCCCC
Q 026724 173 ATPLDDA 179 (234)
Q Consensus 173 a~~~~~~ 179 (234)
+.++...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876554
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=6e-22 Score=167.10 Aligned_cols=156 Identities=26% Similarity=0.438 Sum_probs=118.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
++.++.++.+||||||+|+-.||++.|+. +...|.|+.|.|..|..+........... .+ .
T Consensus 37 vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~------------~~-----v 99 (678)
T KOG0127|consen 37 VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGEN------------KA-----V 99 (678)
T ss_pred EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccc------------hh-----h
Confidence 35788899999999999999999999995 46689999999999887655431100000 00 0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCCCcceEEEEEcChHHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTGHRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~A 156 (234)
..+..... ........+..+|.|.||||.+.+.+|+.+|+.||.|.+|.|+ .+.+-.|||||+|....+|..|
T Consensus 100 eK~~~q~~-----~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~A 174 (678)
T KOG0127|consen 100 EKPIEQKR-----PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKA 174 (678)
T ss_pred hcccccCC-----cchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHH
Confidence 00000000 0001113447899999999999999999999999999999999 3344559999999999999999
Q ss_pred Hh--cCCccCCeEeEEEeCCCCCC
Q 026724 157 SR--RSHEICGQQVAIDSATPLDD 178 (234)
Q Consensus 157 ~~--~~~~~~g~~i~v~~a~~~~~ 178 (234)
|. |++.|.||+|-|.||.++..
T Consensus 175 l~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 175 LEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred HHhccCceecCceeEEeeeccccc
Confidence 94 88999999999999988753
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=8.8e-21 Score=160.12 Aligned_cols=177 Identities=22% Similarity=0.336 Sum_probs=117.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCc----------------c-CCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVG----------------R-MSHGG 61 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~----------------~-~~~~~ 61 (234)
||+.+.++.+ |||||+|.+..+|.+||+ |++.|+||+|.|.||.++........ . ....+
T Consensus 149 IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~ 227 (678)
T KOG0127|consen 149 IPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDG 227 (678)
T ss_pred cccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccc
Confidence 6777776666 999999999999999995 79999999999999988754322110 0 00000
Q ss_pred CCCCCc---cchhhhhhhhc---------CCCCccCCCCCC--CCCC-----------CCCCCCCCEEEEeCCCCCCCHH
Q 026724 62 YGAYNA---YISAATRYAAL---------GAPTLYDHPGSF--YGRG-----------ESSQRIGKKIFVGRLPQEATAE 116 (234)
Q Consensus 62 ~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~-----------~~~~~~~~~l~v~nl~~~~~~~ 116 (234)
-..... ..+........ ......+...+. .+.. ........+|||.|||+++|++
T Consensus 228 ~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEE 307 (678)
T KOG0127|consen 228 KDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEE 307 (678)
T ss_pred cccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHH
Confidence 000000 00000000000 000000000000 0000 0112334799999999999999
Q ss_pred HHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhcC--------CccCCeEeEEEeCCCCCC
Q 026724 117 DLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRRS--------HEICGQQVAIDSATPLDD 178 (234)
Q Consensus 117 ~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~~--------~~~~g~~i~v~~a~~~~~ 178 (234)
+|.++|++||+|..+.|+ ++|+ ++|.|||.|.+..+|.+||+.- ..|.||.|.|..|.++.+
T Consensus 308 el~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 308 ELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999998887 8889 9999999999999999998532 478999999999987653
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.85 E-value=4.5e-20 Score=162.23 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=105.2
Q ss_pred ccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccc-hhhhhhhhcCCCCccCC
Q 026724 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI-SAATRYAALGAPTLYDH 86 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (234)
.+|||||+|.+.++|++|| ++++.|.|++|+|.++........... ....+......+. ....++.. +...
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~r~~~---~~~~-- 385 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG-QLDDGLTSYKDYSSSRNHRFKK---PGSA-- 385 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC-cCcCCCcccccccCCccccCCC---cccc--
Confidence 4799999999999999999 478899999999998765432111000 0000000000000 00000000 0000
Q ss_pred CCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCc--eeEEEeecC-CCCcceEEEEEcChHHHHHHH--hcCC
Q 026724 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKR-TGHRGFGFVTFAEEVVADRVS--RRSH 161 (234)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~--~~~~ 161 (234)
.......++.+|||+|||+++++++|+++|+.||. |+.|++... ++.+++|||+|++.++|..|| ++++
T Consensus 386 ------~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~ 459 (481)
T TIGR01649 386 ------NKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHH 459 (481)
T ss_pred ------cccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCC
Confidence 00011346789999999999999999999999998 788888733 236899999999999999998 4677
Q ss_pred ccCCeE------eEEEeCCCC
Q 026724 162 EICGQQ------VAIDSATPL 176 (234)
Q Consensus 162 ~~~g~~------i~v~~a~~~ 176 (234)
.|.++. |+|.+++++
T Consensus 460 ~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 460 QLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ccCCCCCCccceEEEEeccCC
Confidence 998885 999999764
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.85 E-value=8.1e-21 Score=167.12 Aligned_cols=122 Identities=26% Similarity=0.456 Sum_probs=98.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCcee-CCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhh
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHEL-GGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAA 77 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i-~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
|++| .||+|||||||+|.+.|+|++||+ ++..| .++.|.|.++.
T Consensus 90 l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-------------------------------- 136 (578)
T TIGR01648 90 LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-------------------------------- 136 (578)
T ss_pred EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------------------------------
Confidence 4678 789999999999999999999995 55566 47777665432
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEee---cCCC-CcceEEEEEcChHH
Q 026724 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP---KRTG-HRGFGFVTFAEEVV 152 (234)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~---~~~~-~~g~afV~f~~~~~ 152 (234)
..++|||+|||+++++++|.++|++++. ++++.+. .+.+ +++||||+|+++++
T Consensus 137 ----------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 137 ----------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred ----------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 2578999999999999999999999864 4444443 2334 89999999999999
Q ss_pred HHHHHhc----CCccCCeEeEEEeCCCCC
Q 026724 153 ADRVSRR----SHEICGQQVAIDSATPLD 177 (234)
Q Consensus 153 a~~A~~~----~~~~~g~~i~v~~a~~~~ 177 (234)
|.+|+.. ...+.|+.|.|+|+.++.
T Consensus 195 Aa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 195 AAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHHHHHhhccceEecCceEEEEeecccc
Confidence 9999743 236889999999998764
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.82 E-value=3e-19 Score=157.02 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=101.4
Q ss_pred CccceEEEEEcCHHHHHHHHh----cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCcc
Q 026724 9 AHRGIGFITFASADSVENLMV----DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~----~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (234)
++||||||+|++.++|++||. ++..|.|++|.|.++..+........ .
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~----~------------------------ 87 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS----D------------------------ 87 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC----c------------------------
Confidence 367999999999999999995 46799999999999975532111000 0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCc
Q 026724 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHE 162 (234)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~ 162 (234)
. .........+|||.||++.+|+++|+++|+.||.|++|.|+++. .+++|||+|.+.++|.+|+ +++..
T Consensus 88 -~-------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~-~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 88 -F-------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN-NVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred -c-------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC-CceEEEEEECCHHHHHHHHHHhcCCc
Confidence 0 00001234579999999999999999999999999999888432 3579999999999999998 47778
Q ss_pred cCC--eEeEEEeCCCC
Q 026724 163 ICG--QQVAIDSATPL 176 (234)
Q Consensus 163 ~~g--~~i~v~~a~~~ 176 (234)
|.+ +.|+|.|+++.
T Consensus 159 i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPT 174 (481)
T ss_pred ccCCceEEEEEEecCC
Confidence 865 58999998764
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.81 E-value=5.1e-19 Score=157.07 Aligned_cols=155 Identities=16% Similarity=0.240 Sum_probs=108.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.||+++|||||+|.+.++|++||+ ++..|.|+.|.|.++............. ..... . .
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~---~~~~~------~-----~ 392 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSN---GMAPV------T-----L 392 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccc---ccccc------c-----c
Confidence 46888999999999999999999999994 7889999999999986543221111000 00000 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCC----------CHHHHHHHHhhcCceeEEEeecC-----CC-Ccce
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKR-----TG-HRGF 142 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~~~-----~~-~~g~ 142 (234)
....... ........++.+|+|.||.... ..++|+++|++||.|+.|.|++. ++ ..|+
T Consensus 393 ~~~~~~~------~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 393 LAKALSQ------SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred ccccchh------hhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce
Confidence 0000000 0000013356789999996421 23679999999999999999832 23 5799
Q ss_pred EEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 143 GFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 143 afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
+||+|.+.++|++|| +++..|+|+.|.|.|...
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999998 477799999999998753
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.7e-19 Score=149.97 Aligned_cols=124 Identities=19% Similarity=0.370 Sum_probs=108.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|.+|. | |-|||||.|.++++|++||. |-..|.|++|+|-|+...
T Consensus 30 vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd------------------------------- 75 (369)
T KOG0123|consen 30 VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD------------------------------- 75 (369)
T ss_pred EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-------------------------------
Confidence 46788 7 99999999999999999995 566999999999988632
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCCCcceEEEEEcChHHHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTGHRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~ 157 (234)
...|||.||+++++..+|.++|+.||.|++|++. +..+++|| ||+|+++++|.+|+
T Consensus 76 ----------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 76 ----------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred ----------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 1129999999999999999999999999999999 44559999 99999999999998
Q ss_pred --hcCCccCCeEeEEEeCCCCCCCCC
Q 026724 158 --RRSHEICGQQVAIDSATPLDDAGP 181 (234)
Q Consensus 158 --~~~~~~~g~~i~v~~a~~~~~~~~ 181 (234)
+++..+.+++|.|.....++++..
T Consensus 133 ~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 133 EKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred HHhcCcccCCCeeEEeeccchhhhcc
Confidence 477899999999999888777653
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=3e-18 Score=132.96 Aligned_cols=174 Identities=24% Similarity=0.297 Sum_probs=119.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCC--cEEEEeeccCCCCCCCCC--cc---CCCCCCCCCCccchh
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGG--STVVVDRATPKEDDFRPV--GR---MSHGGYGAYNAYISA 71 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~g--r~i~v~~a~~~~~~~~~~--~~---~~~~~~~~~~~~~~~ 71 (234)
|..|..||.|||.|||.|...++|+.||. |++.-.| .+|.|+++.......... .. .+......+ ....
T Consensus 159 iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp--~hh~ 236 (360)
T KOG0145|consen 159 ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGP--MHHQ 236 (360)
T ss_pred hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCc--ccch
Confidence 45789999999999999999999999994 7776554 679999986543221100 00 000011110 1111
Q ss_pred hhhh-----------hhcCCCCccCCCCCCCCCC-CCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC--C
Q 026724 72 ATRY-----------AALGAPTLYDHPGSFYGRG-ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--T 137 (234)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~--~ 137 (234)
..++ .....|...+......+.. +.......+|||-||.++++|..|.++|.+||.|..|+|+++ +
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt 316 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT 316 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc
Confidence 1111 1111222222222222211 122445789999999999999999999999999999999933 3
Q ss_pred C-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCC
Q 026724 138 G-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 138 ~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~ 176 (234)
. .|||+||++.+.++|..|| +++..+.++.|.|.|...+
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 4 9999999999999999998 5888999999999987654
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=4.2e-19 Score=143.66 Aligned_cols=139 Identities=17% Similarity=0.380 Sum_probs=110.0
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
--|+.|+++||||||+|+-+|.|+-|++ |+..+.||.|+|.+...-...+ ...+....
T Consensus 146 SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQ---------------piID~vqe----- 205 (544)
T KOG0124|consen 146 SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ---------------PIIDMVQE----- 205 (544)
T ss_pred ccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccc---------------hHHHHHHH-----
Confidence 3489999999999999999999999995 7889999999998543211110 00111000
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A 156 (234)
....-++|||..+.++++|+||+..|+.||+|+.|.+. ...+ +|||+|++|.+..+...|
T Consensus 206 -----------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 206 -----------------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred -----------------HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 02345789999999999999999999999999999998 3333 999999999999999999
Q ss_pred H--hcCCccCCeEeEEEeCCCCC
Q 026724 157 S--RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 157 ~--~~~~~~~g~~i~v~~a~~~~ 177 (234)
| +|...+.|+-|+|-.+....
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhhcchhhcccceEecccccCCC
Confidence 8 57779999999998875443
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=9.4e-19 Score=152.06 Aligned_cols=130 Identities=29% Similarity=0.518 Sum_probs=105.9
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (234)
.|.|||||+|.++++|++|+. +++.|+|+.|.|+++..+....-.
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g--------------------------------- 604 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG--------------------------------- 604 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc---------------------------------
Confidence 477999999999999999995 588999999999998722211100
Q ss_pred CCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-c-CCC-CcceEEEEEcChHHHHHHHh--cCC
Q 026724 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-K-RTG-HRGFGFVTFAEEVVADRVSR--RSH 161 (234)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~-~~~-~~g~afV~f~~~~~a~~A~~--~~~ 161 (234)
...+.....++|+|.|||+..+..+++++|..||.|.+|+|+ + ... ++|||||+|-+..+|.+|+. ...
T Consensus 605 ------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ST 678 (725)
T KOG0110|consen 605 ------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGST 678 (725)
T ss_pred ------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccc
Confidence 000113346799999999999999999999999999999999 3 333 79999999999999999983 466
Q ss_pred ccCCeEeEEEeCCCCC
Q 026724 162 EICGQQVAIDSATPLD 177 (234)
Q Consensus 162 ~~~g~~i~v~~a~~~~ 177 (234)
.|.||.|.++||....
T Consensus 679 HlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 679 HLYGRRLVLEWAKSDN 694 (725)
T ss_pred ceechhhheehhccch
Confidence 8999999999998643
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.77 E-value=1.9e-17 Score=145.24 Aligned_cols=173 Identities=16% Similarity=0.222 Sum_probs=109.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCcc------CCCCCCCCCCccchhh
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGR------MSHGGYGAYNAYISAA 72 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (234)
|++|+.||+++|||||+|.+.++|.+||. ++..|.|++|.|.++............ ....+...........
T Consensus 218 ~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (457)
T TIGR01622 218 LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQL 297 (457)
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHH
Confidence 46788999999999999999999999994 788999999999997632211110000 0000000000000000
Q ss_pred -h---------------------hhhhcCCCCccC--C-----------CC-CCCCCCCCCCCCCCEEEEeCCCCCCC--
Q 026724 73 -T---------------------RYAALGAPTLYD--H-----------PG-SFYGRGESSQRIGKKIFVGRLPQEAT-- 114 (234)
Q Consensus 73 -~---------------------~~~~~~~~~~~~--~-----------~~-~~~~~~~~~~~~~~~l~v~nl~~~~~-- 114 (234)
. .+.......... . .. ..............+|+|.||....+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~ 377 (457)
T TIGR01622 298 MEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEE 377 (457)
T ss_pred HHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccc
Confidence 0 000000000000 0 00 00000111235678999999954443
Q ss_pred --------HHHHHHHHhhcCceeEEEee-cCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 115 --------AEDLRRYFSRFGRILDVYVP-KRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 115 --------~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
.+||++.|++||.|+.|.|. +. ..|++||+|.++++|.+|+ +++..++|+.|.|.+...
T Consensus 378 ~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~--~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 378 EPNFDNEILDDVKEECSKYGGVVHIYVDTKN--SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred cchHHHHHHHHHHHHHHhcCCeeEEEEeCCC--CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 36899999999999999887 32 5799999999999999998 578899999999998754
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=1.8e-18 Score=146.58 Aligned_cols=142 Identities=25% Similarity=0.447 Sum_probs=112.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
||.|+.+++|||.|||+|.+.+....|| +.+..+.|.+|.|+.....+..........
T Consensus 211 iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~--------------------- 269 (549)
T KOG0147|consen 211 IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPAL--------------------- 269 (549)
T ss_pred eeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhccccc---------------------
Confidence 6889999999999999999999999999 589999999999987654332211000000
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC--CC-CcceEEEEEcChHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~--~~-~~g~afV~f~~~~~a~~A 156 (234)
. ......+..+|||+||.+++++++|+.+|+.||.|..|.++.+ +| ++||+||+|.+.++|.+|
T Consensus 270 ----~---------~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 270 ----Q---------GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred ----c---------ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 0 0000222334999999999999999999999999999999944 88 999999999999999999
Q ss_pred H--hcCCccCCeEeEEEeCCCC
Q 026724 157 S--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 157 ~--~~~~~~~g~~i~v~~a~~~ 176 (234)
+ +|+.+|.|+.|+|.....+
T Consensus 337 ~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHhccceecCceEEEEEeeee
Confidence 7 4788999999999865443
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=131.04 Aligned_cols=117 Identities=20% Similarity=0.409 Sum_probs=103.6
Q ss_pred ccceEEEEEcCHHHHHHHHhc--CceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCC
Q 026724 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~~--~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (234)
=|.||||..++...|+.||.| +.+|+|..|.|+.+++|
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK---------------------------------------- 74 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK---------------------------------------- 74 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecceEEEEEecccc----------------------------------------
Confidence 367999999999999999976 44999999999988765
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCC
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICG 165 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g 165 (234)
+..+.+|+|+||.+.++.++|+..|++||.|.+|.|+ ++|+||.|+-.++|..|+ +++.++.|
T Consensus 75 ----------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 75 ----------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred ----------CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhccccccccc
Confidence 2357899999999999999999999999999999997 469999999999999999 57889999
Q ss_pred eEeEEEeCCCCCCCCC
Q 026724 166 QQVAIDSATPLDDAGP 181 (234)
Q Consensus 166 ~~i~v~~a~~~~~~~~ 181 (234)
++++|..+..+-...+
T Consensus 140 k~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRTAP 155 (346)
T ss_pred ceeeeeeeccccccCC
Confidence 9999999987665444
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=4.3e-17 Score=120.59 Aligned_cols=77 Identities=23% Similarity=0.493 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 175 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~ 175 (234)
..+++|||+|||.++.+.+|+++|.+||.|.+|.|....+...||||+|++..+|+.||. ++..++|..|+|+++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 357899999999999999999999999999999987444467899999999999999994 78899999999999874
No 31
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=2.3e-16 Score=115.79 Aligned_cols=79 Identities=29% Similarity=0.569 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~~ 177 (234)
..++|||+||+..+++.||+.+|..||+|..|.|... +.|||||+|++..+|+.|+ +++..|+|..|+|++..-+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4789999999999999999999999999999988753 5799999999999999997 78999999999999987665
Q ss_pred CCC
Q 026724 178 DAG 180 (234)
Q Consensus 178 ~~~ 180 (234)
...
T Consensus 87 r~~ 89 (195)
T KOG0107|consen 87 RGS 89 (195)
T ss_pred ccc
Confidence 543
No 32
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=4e-17 Score=125.16 Aligned_cols=77 Identities=40% Similarity=0.669 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhcCC-ccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~~~-~~~g~~i~v~~a 173 (234)
+..-++|||++|+|.+..++|+++|++||+|++..|+ +.++ +|||+||+|.|.++|.+|+++.. .|+||+..|++|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 4566899999999999999999999999999998888 7788 99999999999999999998765 999999999876
Q ss_pred C
Q 026724 174 T 174 (234)
Q Consensus 174 ~ 174 (234)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 33
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=3.9e-16 Score=124.88 Aligned_cols=79 Identities=32% Similarity=0.596 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
....++|+|.|||+...+.||+.+|++||.|.+|.|+ .+.|+|||+||+|++.+||++|- +++..|.||+|+|..|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 5567899999999999999999999999999999999 77779999999999999999996 46779999999999987
Q ss_pred CC
Q 026724 175 PL 176 (234)
Q Consensus 175 ~~ 176 (234)
++
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=8.8e-16 Score=128.89 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=72.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEE
Q 026724 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAID 171 (234)
Q Consensus 97 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~ 171 (234)
.....++|||+|||+++|+++|+++|+.||.|++|+|+ ..++ ++|||||+|.++++|++|| +++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 35578899999999999999999999999999999998 4566 9999999999999999998 47789999999999
Q ss_pred eCCCC
Q 026724 172 SATPL 176 (234)
Q Consensus 172 ~a~~~ 176 (234)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 35
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=119.89 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~~~ 176 (234)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+...++||||+|.+.++|+.|| +++..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 579999999999999999999999999999999854446799999999999999998 5888999999999998643
No 36
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.9e-15 Score=114.79 Aligned_cols=79 Identities=28% Similarity=0.428 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|-|.||+.+++|++|+++|.+||.|..|.|. +.|| +||||||+|.+.++|++|| ++++-++.--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4467889999999999999999999999999999888 7889 9999999999999999998 588899999999999
Q ss_pred CCCC
Q 026724 173 ATPL 176 (234)
Q Consensus 173 a~~~ 176 (234)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 37
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=2.2e-15 Score=97.54 Aligned_cols=66 Identities=35% Similarity=0.758 Sum_probs=60.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCceeEEEeec-CCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeE
Q 026724 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVA 169 (234)
Q Consensus 104 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~-~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~ 169 (234)
|||+|||+++|+++|+++|++||.|..+.+.. .++ .+++|||+|.+.++|++|+. ++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999884 555 89999999999999999984 67899999875
No 38
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.5e-15 Score=104.77 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=71.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
...+++|||+||++.++|++|.++|+.+|.|..|.+- +.+. +.|||||+|.+.++|+.|+ .++..++.+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4568999999999999999999999999999988665 5566 8999999999999999998 478899999999999
Q ss_pred CCCCCC
Q 026724 173 ATPLDD 178 (234)
Q Consensus 173 a~~~~~ 178 (234)
...-.+
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 865443
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.57 E-value=8.1e-14 Score=117.20 Aligned_cols=134 Identities=20% Similarity=0.314 Sum_probs=102.4
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCC
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (234)
.+.+|+..|-|||+|++.||+++||++ ...+..|.|.|-.+...+.......
T Consensus 42 ~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~--------------------------- 94 (510)
T KOG4211|consen 42 PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRP--------------------------- 94 (510)
T ss_pred eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccC---------------------------
Confidence 456899999999999999999999974 5688889999987765543211100
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE-EEee-cCCC-CcceEEEEEcChHHHHHHHh-
Q 026724 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVP-KRTG-HRGFGFVTFAEEVVADRVSR- 158 (234)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~-~~~~-~~g~afV~f~~~~~a~~A~~- 158 (234)
..+........|-+.+||+.||++||.++|+..-.|.. |.++ ...+ +.|-|||+|++.+.|++||.
T Consensus 95 ----------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 95 ----------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ----------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 00001235678899999999999999999998866655 4444 3334 88999999999999999996
Q ss_pred cCCccCCeEeEEEeCC
Q 026724 159 RSHEICGQQVAIDSAT 174 (234)
Q Consensus 159 ~~~~~~g~~i~v~~a~ 174 (234)
+...|..|-|+|..+.
T Consensus 165 hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHhhccceEEeehhH
Confidence 5668888889997664
No 40
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.6e-14 Score=121.49 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcCh--HHHHHHH--hcCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEE--VVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
.....+||||||++.+++++|+.+|+.||.|..|.|++.++ ||||||+|.+. .++.+|| +++..+.|+.|+|..|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 34567999999999999999999999999999999997777 99999999987 6788888 5888999999999999
Q ss_pred CCC
Q 026724 174 TPL 176 (234)
Q Consensus 174 ~~~ 176 (234)
+|.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 863
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=111.04 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~ 174 (234)
...+|||+||++.+|+++|+++|+.||.|.+|.|+++...++||||+|.+.++|+.|+ +++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999966556789999999999999997 69999999999998654
No 42
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.2e-14 Score=121.16 Aligned_cols=126 Identities=25% Similarity=0.451 Sum_probs=106.4
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (234)
|||| ||+|+++++|++||. |+..+.+++|.|.....+.....+...
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~------------------------------- 162 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE------------------------------- 162 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-------------------------------
Confidence 9999 999999999999994 788999999999988776654433211
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCcc
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEI 163 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~ 163 (234)
.......+||.|++.+++++.|.++|..+|.|..+.++ +..+ +++|+||.|.++++|..|+. ++..+
T Consensus 163 ---------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 163 ---------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred ---------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcC
Confidence 02345679999999999999999999999999999999 5555 89999999999999999985 56678
Q ss_pred CCeEeEEEeCCCC
Q 026724 164 CGQQVAIDSATPL 176 (234)
Q Consensus 164 ~g~~i~v~~a~~~ 176 (234)
.+..+.|..+..+
T Consensus 234 ~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 234 GDKELYVGRAQKK 246 (369)
T ss_pred Cccceeecccccc
Confidence 8888888888764
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=3.2e-14 Score=107.21 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=72.1
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeE
Q 026724 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVA 169 (234)
Q Consensus 95 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~ 169 (234)
++.......|-|-||.+.++.++|+.+|++||.|-+|.|+ +-|. ++|||||.|.+..+|+.|+ +++..|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 3335567789999999999999999999999999999999 5567 9999999999999999998 578899999999
Q ss_pred EEeCCC
Q 026724 170 IDSATP 175 (234)
Q Consensus 170 v~~a~~ 175 (234)
|.+|+=
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 998863
No 44
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=5.9e-14 Score=91.04 Aligned_cols=66 Identities=41% Similarity=0.737 Sum_probs=56.9
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC-CC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeE
Q 026724 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-TG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVA 169 (234)
Q Consensus 104 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~ 169 (234)
|||+|||+++++++|.++|+.||.|..+.+... .+ .+++|||+|.+.++|..|+. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999832 25 89999999999999999984 45799999875
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.5e-13 Score=106.21 Aligned_cols=82 Identities=24% Similarity=0.429 Sum_probs=73.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..+-++|||+-|+++++|..|+..|+.||.|+.|+|+ +.|+ ++|||||+|++..+..+|.. .+..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3567899999999999999999999999999999999 5688 99999999999999999984 57799999999999
Q ss_pred CCCCCCC
Q 026724 173 ATPLDDA 179 (234)
Q Consensus 173 a~~~~~~ 179 (234)
-..+...
T Consensus 178 ERgRTvk 184 (335)
T KOG0113|consen 178 ERGRTVK 184 (335)
T ss_pred ccccccc
Confidence 8766543
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.1e-13 Score=106.68 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=74.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....|+|||-.||.+..+.+|.++|-.||.|.+.+|. +.|. +|.|+||.|+++.+|+.|| +|+..|.=++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 5678999999999999999999999999999988776 7777 9999999999999999998 577889889999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
.+|+....
T Consensus 362 KRPkdanR 369 (371)
T KOG0146|consen 362 KRPKDANR 369 (371)
T ss_pred cCccccCC
Confidence 99987654
No 47
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=1.2e-13 Score=122.47 Aligned_cols=78 Identities=24% Similarity=0.482 Sum_probs=70.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|++|+ +++..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3456899999999999999999999999999999998 4567 9999999999999999998 478899999999986
Q ss_pred CCC
Q 026724 173 ATP 175 (234)
Q Consensus 173 a~~ 175 (234)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.3e-14 Score=106.61 Aligned_cols=81 Identities=32% Similarity=0.550 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhc--CCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~ 172 (234)
....++|||++|..+++|.-|...|-+||.|.+|.++ -.++ ++||+||+|+..|+|.+||.| ..+|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4567899999999999999999999999999999999 4455 999999999999999999965 5599999999999
Q ss_pred CCCCCC
Q 026724 173 ATPLDD 178 (234)
Q Consensus 173 a~~~~~ 178 (234)
|+|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998653
No 49
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=2.3e-13 Score=95.88 Aligned_cols=83 Identities=28% Similarity=0.421 Sum_probs=75.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 96 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
+.+.....|||.++...++|++|.+.|..||+|+++.+- +.|+ .||||.|+|++.+.|++|+ +|+..|.++.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 336678899999999999999999999999999999887 7788 9999999999999999998 4788999999999
Q ss_pred EeCCCCCC
Q 026724 171 DSATPLDD 178 (234)
Q Consensus 171 ~~a~~~~~ 178 (234)
.|+.-+.+
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99976544
No 50
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=1e-12 Score=84.72 Aligned_cols=69 Identities=39% Similarity=0.769 Sum_probs=61.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEE
Q 026724 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 171 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~ 171 (234)
+|||.|||..+++++|+++|++||.|..+.+....+ ++++|||+|.+.++|+.|+. ++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999998884435 78999999999999999984 5678899998873
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=88.17 Aligned_cols=80 Identities=18% Similarity=0.387 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
......|||.|||+.+|.++..++|.+||.|..|+|-....-+|.|||.|++..+|.+|+ +.+..++++.+.|-+-.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345678999999999999999999999999999999733336899999999999999998 467799999999988766
Q ss_pred CC
Q 026724 176 LD 177 (234)
Q Consensus 176 ~~ 177 (234)
..
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 43
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.42 E-value=2.5e-12 Score=109.62 Aligned_cols=170 Identities=17% Similarity=0.265 Sum_probs=104.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccC--------CCCCCCCCCccch
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRM--------SHGGYGAYNAYIS 70 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 70 (234)
|++|..||++||||||+|.+.++|.+|++ |+.+|.|+.|+|.....+.......... .....+... ...
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g-~~Q 388 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGG-RNQ 388 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccccccc-HHH
Confidence 56888999999999999999999999984 7889999999998765543322110000 000000000 001
Q ss_pred hhhhhhhcCC---CC--------------ccCCCCCC--CCC-----CCCCCCCCCEEEEeCC--CCCCC--------HH
Q 026724 71 AATRYAALGA---PT--------------LYDHPGSF--YGR-----GESSQRIGKKIFVGRL--PQEAT--------AE 116 (234)
Q Consensus 71 ~~~~~~~~~~---~~--------------~~~~~~~~--~~~-----~~~~~~~~~~l~v~nl--~~~~~--------~~ 116 (234)
.......... +. ........ ... .+.-..++.++.+.|+ |...| .+
T Consensus 389 l~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~e 468 (549)
T KOG0147|consen 389 LMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIRE 468 (549)
T ss_pred HHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHH
Confidence 1111100000 00 00000000 000 1111256677778877 22212 35
Q ss_pred HHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 117 DLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 117 ~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
|+.+.+.+||.|..|.|.+. +-|+.||.|.+.+.|..|+. ++..|.|+.|.+.|-
T Consensus 469 dV~Eec~k~g~v~hi~vd~n--s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 469 DVIEECGKHGKVCHIFVDKN--SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHhcCCeeEEEEccC--CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 77788899999999988654 45999999999999999984 666999999999875
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.42 E-value=6.3e-12 Score=96.45 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCC-
Q 026724 5 QGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP- 81 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (234)
-.|.+.||-|||.|.+.+.|..|+ +++..+.|++++|++|..+........... ..........+......+
T Consensus 46 ~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~-----v~~~~k~~~~~~~~~~~~~ 120 (221)
T KOG4206|consen 46 FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTF-----VEKEKKINGEILARIKQPL 120 (221)
T ss_pred cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCcee-----ccccCccccccccccCCcc
Confidence 357899999999999999999999 478899999999999987665432211000 000000000000000000
Q ss_pred ---------CccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHH
Q 026724 82 ---------TLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVV 152 (234)
Q Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~ 152 (234)
...+.+... . .....+...||+.|||..++.+.|..+|.+|.-..+|+++.. .++.|||+|.+...
T Consensus 121 ~~ng~~~~~~~~~~p~p~--~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--~~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 121 DTNGHFYNMNRMNLPPPF--L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--RSGIAFVEFLSDRQ 195 (221)
T ss_pred cccccccccccccCCCCc--c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--CCceeEEecchhhh
Confidence 000000000 1 233667889999999999999999999999999999999843 36899999999887
Q ss_pred HHHHHh--cCC-ccCCeEeEEEeCC
Q 026724 153 ADRVSR--RSH-EICGQQVAIDSAT 174 (234)
Q Consensus 153 a~~A~~--~~~-~~~g~~i~v~~a~ 174 (234)
|..|.. .+. .-....+.|.+++
T Consensus 196 a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 196 ASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hHHHhhhhccceeccCceEEecccC
Confidence 777753 222 3336777777764
No 54
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-12 Score=109.18 Aligned_cols=79 Identities=28% Similarity=0.482 Sum_probs=67.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cC--CCCcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KR--TGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 176 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~--~~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~~~ 176 (234)
...|||.|||.++++++|+++|.+||.|+...|. +. .....||||+|.+.++++.||+ +...|++++|.|+..++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 3459999999999999999999999999998877 33 2244999999999999999996 567999999999987765
Q ss_pred CCC
Q 026724 177 DDA 179 (234)
Q Consensus 177 ~~~ 179 (234)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 544
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=6.5e-13 Score=98.32 Aligned_cols=78 Identities=24% Similarity=0.502 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
.....+|||+||+..++++.|.++|-+.|+|.++.++ +.+. .+|||||+|.++++|+-|+ +++..|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3457899999999999999999999999999999999 5566 8999999999999999996 588899999999999
Q ss_pred CCC
Q 026724 173 ATP 175 (234)
Q Consensus 173 a~~ 175 (234)
+..
T Consensus 86 as~ 88 (203)
T KOG0131|consen 86 ASA 88 (203)
T ss_pred ccc
Confidence 873
No 56
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.2e-12 Score=102.58 Aligned_cols=77 Identities=30% Similarity=0.483 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
...+||+.|...++-++|++.|.+||+|.+++|++ .|+ +|||+||.|-+.++|+.|| +++.-|.+|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 46799999999999999999999999999999994 355 9999999999999999999 578899999999999977
Q ss_pred CC
Q 026724 176 LD 177 (234)
Q Consensus 176 ~~ 177 (234)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 57
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=6.4e-14 Score=103.57 Aligned_cols=76 Identities=28% Similarity=0.534 Sum_probs=68.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
-..+.-|||+|||+.+||.||.-+|++||+|++|.++ +.|| ++||||+.|++..+..-|+ +|+..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3457789999999999999999999999999999999 6788 9999999999999888888 467799999999985
Q ss_pred C
Q 026724 173 A 173 (234)
Q Consensus 173 a 173 (234)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=7e-11 Score=87.89 Aligned_cols=124 Identities=22% Similarity=0.320 Sum_probs=90.4
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (234)
.-.||||+|+++.||+.||. ++..++|..|+|+++..-.........-+..+.+..
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGg---------------------- 101 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGG---------------------- 101 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCC----------------------
Confidence 34699999999999999994 788999999999998754322111111110100000
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhc
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRR 159 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 159 (234)
.......++......+|.|.+||++.+|+||+++..+-|.|....+.++ +.+.|+|...|+.+-||.+
T Consensus 102 g~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 102 GGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----GVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred CCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----cceeeeeeehhhHHHHHHh
Confidence 0011122333556788999999999999999999999999988888765 7999999999999999843
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1e-12 Score=103.95 Aligned_cols=70 Identities=29% Similarity=0.657 Sum_probs=64.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcC--CccCCeEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~--~~~~g~~i~v~~a~~~ 176 (234)
.+|||+|||.++++.+|+.+|++||+|++|.|++ .|+||..++...|+.||.|. ..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-----ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999999999999984 69999999999999999754 4999999999998877
No 60
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=8.5e-12 Score=103.96 Aligned_cols=75 Identities=27% Similarity=0.565 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCcc-CCeEeEEEe
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEI-CGQQVAIDS 172 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~-~g~~i~v~~ 172 (234)
...+.|||+.||.++.|++|.-+|++.|+|-+++|+ +.++ +||||||+|.+.++|+.||. |.++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 568899999999999999999999999999999999 5788 99999999999999999984 56655 577777765
Q ss_pred C
Q 026724 173 A 173 (234)
Q Consensus 173 a 173 (234)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 5
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=1.3e-11 Score=102.76 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=69.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYF-SRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
...+.+||.|||+++.|++|+++| ++.|+|+.|.+. ...+ ++|||.|+|+++|.+++|++ +.++++||+|.|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345569999999999999999999 568999999988 6666 99999999999999999984 678999999999876
Q ss_pred CCCC
Q 026724 174 TPLD 177 (234)
Q Consensus 174 ~~~~ 177 (234)
...+
T Consensus 122 ~d~q 125 (608)
T KOG4212|consen 122 HDEQ 125 (608)
T ss_pred Cchh
Confidence 5544
No 62
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=6e-12 Score=80.71 Aligned_cols=66 Identities=39% Similarity=0.719 Sum_probs=57.7
Q ss_pred EeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEE
Q 026724 106 VGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 171 (234)
Q Consensus 106 v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~ 171 (234)
|+|||..+++++|+++|++||.|..+.+. +.++ ++++|||+|.+.++|..|+. +...+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999888 3345 89999999999999999984 5568889988873
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=7.6e-12 Score=101.68 Aligned_cols=75 Identities=37% Similarity=0.721 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 175 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~ 175 (234)
..+|||+|||+.+++++|.++|.+||.|..+.+. +.++ ++|||||+|.+.++|..|+. ++..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999888 3467 99999999999999999984 56799999999999654
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.9e-12 Score=105.52 Aligned_cols=82 Identities=27% Similarity=0.522 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh---cCCccCC--eEeE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR---RSHEICG--QQVA 169 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~---~~~~~~g--~~i~ 169 (234)
+...-+|||+-+|..++|.||+++|++||.|.+|.|+ +.++ ++|||||.|.+.++|.+|+. |...|-| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4567799999999999999999999999999999999 5577 99999999999999999873 4556666 5889
Q ss_pred EEeCCCCCCC
Q 026724 170 IDSATPLDDA 179 (234)
Q Consensus 170 v~~a~~~~~~ 179 (234)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9999876655
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=107.90 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=98.2
Q ss_pred EEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCCC---
Q 026724 14 GFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG--- 88 (234)
Q Consensus 14 aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 88 (234)
|.|+|.++.+|.+|+. +...+...++.+.|+........+....-. .............+......+...+...
T Consensus 424 aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~-~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ 502 (725)
T KOG0110|consen 424 AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLS-AESRSKMEENPSERVSAEDGQVEEDKDPTEE 502 (725)
T ss_pred eeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccc-cccccccccCcceecccccccccccCCcccc
Confidence 8999999999999995 445666777777776322111000000000 0000000001111111111111111110
Q ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCC--C--CcceEEEEEcChHHHHHHHh--cC
Q 026724 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT--G--HRGFGFVTFAEEVVADRVSR--RS 160 (234)
Q Consensus 89 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~--~--~~g~afV~f~~~~~a~~A~~--~~ 160 (234)
+............++|||.||++++|.++|..+|...|.|.++.|. ++. . +.|||||+|.+.++|+.|+. ++
T Consensus 503 ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 503 SSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred ccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC
Confidence 0000011112223349999999999999999999999999999888 221 2 66999999999999999984 57
Q ss_pred CccCCeEeEEEeCC
Q 026724 161 HEICGQQVAIDSAT 174 (234)
Q Consensus 161 ~~~~g~~i~v~~a~ 174 (234)
+.|+|+.|.|+++.
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 89999999999998
No 66
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=2.2e-11 Score=78.74 Aligned_cols=70 Identities=34% Similarity=0.700 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC-C-CCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-T-GHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~-~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
+|+|+|||..+++++|+++|+.+|.|..+.+... . ..+++|||+|.+.++|..|+. +...++++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988833 2 268999999999999999985 45568999998864
No 67
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=5.6e-12 Score=107.76 Aligned_cols=79 Identities=32% Similarity=0.595 Sum_probs=72.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~ 176 (234)
+.|||+|+|+++++++|.++|+..|.|.+++++ +++| ++||+|++|.+.++|..|+ +++.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999998 7788 9999999999999999998 4778999999999999766
Q ss_pred CCCC
Q 026724 177 DDAG 180 (234)
Q Consensus 177 ~~~~ 180 (234)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5443
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.1e-12 Score=96.96 Aligned_cols=132 Identities=23% Similarity=0.397 Sum_probs=97.2
Q ss_pred ccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCC
Q 026724 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (234)
-.||+||+|.+.-+|+.|| +++..|.+..+.|.++.......... .++... .
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~-------~~g~r~--------------~----- 87 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP-------RGGDRR--------------S----- 87 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC-------CCCCcc--------------c-----
Confidence 3579999999999999999 57888888888888887543322000 000000 0
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCC
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICG 165 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g 165 (234)
....-.....+.+.|.|.+|+..+.+.+|.+.|.++|++....+ ..+++||+|++.++|..|+. .+..+.+
T Consensus 88 --~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 88 --DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNG 160 (216)
T ss_pred --hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcC
Confidence 00001112556789999999999999999999999999965544 36899999999999999984 6779999
Q ss_pred eEeEEEeCC
Q 026724 166 QQVAIDSAT 174 (234)
Q Consensus 166 ~~i~v~~a~ 174 (234)
+.|.+.+..
T Consensus 161 ~~l~~~~~~ 169 (216)
T KOG0106|consen 161 RRISVEKNS 169 (216)
T ss_pred ceeeecccC
Confidence 999995443
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=2.6e-11 Score=98.24 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=70.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh---cCCccCCeEeEEE
Q 026724 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR---RSHEICGQQVAID 171 (234)
Q Consensus 95 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~---~~~~~~g~~i~v~ 171 (234)
++.+....+|||++|...++|.+|+++|.+||+|+++++... +++|||+|.+.++|+.|.+ +...|+|++|.|.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 344667889999999999999999999999999999999843 5799999999999999974 4558999999999
Q ss_pred eCCCCC
Q 026724 172 SATPLD 177 (234)
Q Consensus 172 ~a~~~~ 177 (234)
|..++.
T Consensus 299 Wg~~~~ 304 (377)
T KOG0153|consen 299 WGRPKQ 304 (377)
T ss_pred eCCCcc
Confidence 999843
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.26 E-value=9e-11 Score=89.80 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=89.1
Q ss_pred CCCCCccceEEEEEcCHHHHHHHHh--cCceeC---CcEEEEeeccCCCCCCCCCccCCCCC--CCCCCccchhhhhhh-
Q 026724 5 QGSKAHRGIGFITFASADSVENLMV--DTHELG---GSTVVVDRATPKEDDFRPVGRMSHGG--YGAYNAYISAATRYA- 76 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~---gr~i~v~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~- 76 (234)
+....++=+|||+|.+..+|.+|+. |+..++ +..|+|++|++..+..+.......+. ......+...+....
T Consensus 71 k~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~ 150 (284)
T KOG1457|consen 71 KGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSAD 150 (284)
T ss_pred CCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccch
Confidence 3334456799999999999999993 777775 67899999876544333222111110 000000000000000
Q ss_pred -----------hcCC----CCccCCC--------------CC------CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHH
Q 026724 77 -----------ALGA----PTLYDHP--------------GS------FYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121 (234)
Q Consensus 77 -----------~~~~----~~~~~~~--------------~~------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 121 (234)
.... +.+.... .. .............+|||.||..+++|++|+.+
T Consensus 151 ~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~ 230 (284)
T KOG1457|consen 151 DQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQL 230 (284)
T ss_pred hhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHH
Confidence 0000 0000000 00 00001112334568999999999999999999
Q ss_pred HhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh
Q 026724 122 FSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 122 f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
|+.|--...++|.... ....|||+|++.+.|..|+.
T Consensus 231 ~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 231 LSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred HHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHH
Confidence 9999887777776222 34689999999999999973
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.26 E-value=6.5e-12 Score=103.01 Aligned_cols=81 Identities=43% Similarity=0.672 Sum_probs=73.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 175 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~~ 175 (234)
..++|||++|+|+++++.|+++|.+||+|.+|.++ +.++ +++|+||+|++.+....+|. ..|.|+|+.|.++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57899999999999999999999999999999999 5567 99999999999999888885 57899999999999998
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 87544
No 72
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=6.1e-11 Score=73.28 Aligned_cols=54 Identities=30% Similarity=0.562 Sum_probs=47.5
Q ss_pred HHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 118 LRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 118 l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
|.++|++||.|..+.+.+.. +++|||+|.+.++|..|+. ++..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998542 5999999999999999984 788999999999986
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2e-11 Score=95.64 Aligned_cols=81 Identities=27% Similarity=0.486 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec-CCC-CcceEEEEEcChHHHHHHHhcCC---ccCC--eEeEEEe
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTG-HRGFGFVTFAEEVVADRVSRRSH---EICG--QQVAIDS 172 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~-~~~-~~g~afV~f~~~~~a~~A~~~~~---~~~g--~~i~v~~ 172 (234)
..++|||+-|...-.|+|++.+|..||.|.+|.+.+ ..+ +|||+||.|.+..+|..||...| .+-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999983 344 99999999999999999985433 4544 5799999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+....++.
T Consensus 98 ADTdkER~ 105 (371)
T KOG0146|consen 98 ADTDKERT 105 (371)
T ss_pred ccchHHHH
Confidence 98776654
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.19 E-value=4.6e-10 Score=93.62 Aligned_cols=170 Identities=20% Similarity=0.325 Sum_probs=103.0
Q ss_pred CCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCcc-C-----------------CCCCC
Q 026724 3 KDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGR-M-----------------SHGGY 62 (234)
Q Consensus 3 rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~-~-----------------~~~~~ 62 (234)
.|. +|++||+|.|+|+++|.+++|++ +.+.+.||+|.|+.....+..+..... . .....
T Consensus 79 ~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g 157 (608)
T KOG4212|consen 79 FDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGG 157 (608)
T ss_pred ccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccC
Confidence 343 59999999999999999999995 688999999999865443222211000 0 00000
Q ss_pred --CCCC--ccch----hhhh----------hhhcCCCCccCCCCCCC-CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHh
Q 026724 63 --GAYN--AYIS----AATR----------YAALGAPTLYDHPGSFY-GRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123 (234)
Q Consensus 63 --~~~~--~~~~----~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 123 (234)
+... .... ...+ ....+...+........ ....-..+...++||.||.+.+....|++.|.
T Consensus 158 ~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg 237 (608)
T KOG4212|consen 158 GGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG 237 (608)
T ss_pred CCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc
Confidence 0000 0000 0000 00000000000000000 00111244567899999999999999999999
Q ss_pred hcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 124 RFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 124 ~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
-.|.|..|.+- ...+ ++||+.++|..+-+|..|| ++..-+..++..+...
T Consensus 238 mAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 238 MAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred cceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 99999988776 4445 9999999999988888887 3444555666666553
No 75
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=2.5e-09 Score=90.50 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=55.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEe
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 172 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~ 172 (234)
...++..+||+..++.+|..+|+..-.+ .|.|. ..++ ..|-|+|+|.+.++|..|+. +...+..+-|++..
T Consensus 281 g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 281 GHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFL 354 (510)
T ss_pred CceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecc
Confidence 3778899999999999999999886555 44444 4455 88999999999999999995 44466666666544
No 76
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.4e-11 Score=96.62 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
.++.+.|||.-|.+-++.++|+-+|+.||.|.+|.|+ +.|+ +..||||+|++.+++++|. +....|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 5567899999999999999999999999999999999 6677 9999999999999999997 455689999999999
Q ss_pred CCCC
Q 026724 173 ATPL 176 (234)
Q Consensus 173 a~~~ 176 (234)
+++-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8643
No 77
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.9e-10 Score=74.42 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=47.9
Q ss_pred HHHHHHHHh----hcCceeEEE-ee--cCC--C-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 115 AEDLRRYFS----RFGRILDVY-VP--KRT--G-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 115 ~~~l~~~f~----~~G~v~~~~-~~--~~~--~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
+++|+++|+ +||.|.+|. |+ +.+ + ++||+||+|.+.++|.+|+ +++..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 43 444 6 9999999999999999998 4788999999986
No 78
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.12 E-value=1.9e-09 Score=89.27 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=104.6
Q ss_pred ceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCCCC
Q 026724 12 GIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 89 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (234)
=-|.|++.+...|+-|++ +++.|.|++|+|.+++...-. .......+...+.....+.-.|+.........+.
T Consensus 336 d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq--lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--- 410 (492)
T KOG1190|consen 336 DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ--LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--- 410 (492)
T ss_pred cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc--CCCCCCccccccccCCCCchhhccCccccccccc---
Confidence 369999999999999994 899999999999887544322 1111112222233333444555554444444333
Q ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE-EEeecCCCCcceEEEEEcChHHHHHHHhcC--CccCCe
Q 026724 90 FYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQ 166 (234)
Q Consensus 90 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~~~--~~~~g~ 166 (234)
.+++.+|++.|+|.+++|++|+.+|..-|-... ..+... .+.++.+.+++.|+|..|+... |.+...
T Consensus 411 --------~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k--d~kmal~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 411 --------FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK--DRKMALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred --------CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC--CcceeecccCChhHhhhhccccccccCCCC
Confidence 456789999999999999999999988775543 344321 3679999999999999998544 566544
Q ss_pred -EeEEEeCCC
Q 026724 167 -QVAIDSATP 175 (234)
Q Consensus 167 -~i~v~~a~~ 175 (234)
.++|+|++.
T Consensus 481 ~hlRvSFSks 490 (492)
T KOG1190|consen 481 HHLRVSFSKS 490 (492)
T ss_pred ceEEEEeecc
Confidence 889999874
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=9.3e-11 Score=95.68 Aligned_cols=75 Identities=25% Similarity=0.524 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
-.++|||+.+.+++.|+.|+..|..||+|++|.+. ..|+ +||||||+|+-+|.|+-|++ |+..+.||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 46899999999999999999999999999999888 5577 99999999999999999984 7789999999997443
No 80
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.08 E-value=2.1e-10 Score=84.84 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=44.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|+++||||||+|++.++|++||+ +++.|+|++|+|+++.++..
T Consensus 66 i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 46899999999999999999999999995 68899999999999976654
No 81
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.07 E-value=7.8e-10 Score=85.04 Aligned_cols=79 Identities=28% Similarity=0.473 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHH----HHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 100 IGKKIFVGRLPQEATAEDLRR----YFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
+..+|||.||+..+..++|+. +|++||.|.+|...+..+.+|-|||.|.+.+.|..|+ +++..+.|+.++|.||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 344999999999999999888 9999999999988755558999999999999999998 4777999999999999
Q ss_pred CCCCC
Q 026724 174 TPLDD 178 (234)
Q Consensus 174 ~~~~~ 178 (234)
+.+..
T Consensus 88 ~s~sd 92 (221)
T KOG4206|consen 88 KSDSD 92 (221)
T ss_pred cCccc
Confidence 87643
No 82
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=4.9e-10 Score=99.22 Aligned_cols=80 Identities=20% Similarity=0.412 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~ 175 (234)
...+++|||+.|+.+++|.||..+|+.||+|.+|.++. +++||||.+....+|.+|+. +.+.+..+.|+|.|+..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 45678999999999999999999999999999998875 47999999999999999985 56689999999999987
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+..+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 76554
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.1e-09 Score=94.54 Aligned_cols=150 Identities=19% Similarity=0.288 Sum_probs=100.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
+++|..||-|+||||.+|.++...+.|+. |+..+.+++|.|..|..............+.
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~------------------ 382 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS------------------ 382 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc------------------
Confidence 46899999999999999999999999994 7889999999999987654433322210000
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCC--CCCC-CH-------HHHHHHHhhcCceeEEEeecC--C---C-Ccce
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRL--PQEA-TA-------EDLRRYFSRFGRILDVYVPKR--T---G-HRGF 142 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~-~~-------~~l~~~f~~~G~v~~~~~~~~--~---~-~~g~ 142 (234)
+.+..... .......++..|.+.|+ |.++ ++ ++++..+.+||.|..|.+++. . . ..|.
T Consensus 383 ~~~~i~~~------~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~Gk 456 (500)
T KOG0120|consen 383 QVPGIPLL------MTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGK 456 (500)
T ss_pred ccccchhh------hcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCccc
Confidence 00000000 00011233444544444 1111 22 345667789999999999833 1 1 5678
Q ss_pred EEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 143 GFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 143 afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
.||+|.+.+++++|+ +.+..+.+|.|...|-.
T Consensus 457 VFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 457 VFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred EEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 899999999999998 46779999999988764
No 84
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.97 E-value=5.1e-09 Score=90.16 Aligned_cols=80 Identities=26% Similarity=0.572 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee---cCCCCcceEEEEEcChHHHHHHHhcCC--ccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~~~--~~~g~~i~v~~ 172 (234)
....++|||.+|+..+...+|+.+|++||.|+-..|+ +..+.+.|+||++.+.++|.+||.+.| +|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4456889999999999999999999999999988888 444488999999999999999997765 99999999999
Q ss_pred CCCCC
Q 026724 173 ATPLD 177 (234)
Q Consensus 173 a~~~~ 177 (234)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87643
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.6e-09 Score=93.53 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=106.2
Q ss_pred CCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 7 SKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
....+.||||+|.+.++|..|+. +...+.|+++.+.................+ ...
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~-----------------------~~~ 275 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ-----------------------LGK 275 (500)
T ss_pred ecccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhcc-----------------------ccc
Confidence 45678899999999999999994 677889999888655433322111000000 000
Q ss_pred CCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcC
Q 026724 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRS 160 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~ 160 (234)
. ..............++||++||..+++++++++...||.+....++ ..++ +++|||.+|-+......|+ +++
T Consensus 276 ~--~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG 353 (500)
T KOG0120|consen 276 V--GLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG 353 (500)
T ss_pred c--CCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch
Confidence 0 0000011114456789999999999999999999999999988887 4556 9999999999999888887 578
Q ss_pred CccCCeEeEEEeCCCCC
Q 026724 161 HEICGQQVAIDSATPLD 177 (234)
Q Consensus 161 ~~~~g~~i~v~~a~~~~ 177 (234)
..+.+..|.|..|.+..
T Consensus 354 m~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 354 MQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhhcCceeEeehhhccc
Confidence 89999999999886544
No 86
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=5.8e-10 Score=86.10 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=42.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a~~ 46 (234)
||.|+.|++|||||||+|.|.|.|.+|+++ ...|+||+..|++|.-
T Consensus 44 vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 44 VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 578999999999999999999999999987 5699999999998864
No 87
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.91 E-value=5.2e-09 Score=85.64 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=104.1
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHh-cC-ceeCCcEEEEeeccCCCCCCC-CCccCCCCCCCCCCccchhhhhhhhcCC
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMV-DT-HELGGSTVVVDRATPKEDDFR-PVGRMSHGGYGAYNAYISAATRYAALGA 80 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~-~~-~~i~gr~i~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
......++|++.|.|+..+.+..|++ .. +.+.++.+............. +..+
T Consensus 123 ~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~------------------------ 178 (285)
T KOG4210|consen 123 LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSR------------------------ 178 (285)
T ss_pred hccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcc------------------------
Confidence 34567899999999999999999995 33 466777665554443321100 0000
Q ss_pred CCccCCCCCCCCCCCCCCCCCCEEE-EeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHH
Q 026724 81 PTLYDHPGSFYGRGESSQRIGKKIF-VGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A 156 (234)
.......++| |++|+..+++++|+.+|..+|.|..++++ +.++ .++|++|.|.+...+..+
T Consensus 179 ---------------~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 179 ---------------LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ---------------cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 0022344555 99999999999999999999999999999 5666 999999999999999999
Q ss_pred Hh-cCCccCCeEeEEEeCCCCCCC
Q 026724 157 SR-RSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 157 ~~-~~~~~~g~~i~v~~a~~~~~~ 179 (234)
+. ..+.+.++++.+.+..+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 244 LNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhcccCcccCcccccccCCCCccc
Confidence 87 566899999999998877654
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.91 E-value=2.3e-09 Score=83.64 Aligned_cols=128 Identities=23% Similarity=0.360 Sum_probs=96.7
Q ss_pred CCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
+.-++++|+.|.....-.++- .++..+.-++|++......++. .+.+
T Consensus 137 ~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP-------------------------------sl~e 185 (290)
T KOG0226|consen 137 QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP-------------------------------SLAE 185 (290)
T ss_pred CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc-------------------------------cccc
Confidence 567889999988777666665 2455666666655444333221 1111
Q ss_pred CCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcC
Q 026724 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRS 160 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~ 160 (234)
......+||++.|..+++++.|-..|.+|-.....+++ +.|+ ++||+||.|.+..++..|+ +++
T Consensus 186 -----------w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 186 -----------WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred -----------CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 14567899999999999999999999999888777777 4466 9999999999999999998 478
Q ss_pred CccCCeEeEEEeCCCCC
Q 026724 161 HEICGQQVAIDSATPLD 177 (234)
Q Consensus 161 ~~~~g~~i~v~~a~~~~ 177 (234)
..++.+.|++.....++
T Consensus 255 kyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 255 KYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccchhHhhhhhHHh
Confidence 89999999888766554
No 89
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=9.3e-09 Score=78.02 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=67.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc-CceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~ 171 (234)
.....-+||..+|..+.+.+|..+|.+| |.|..+++. +.|| ++|||||+|++.+.|.-|. +|..-+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 5556779999999999999999999988 777888885 6788 9999999999999999997 46668889999988
Q ss_pred eCCCC
Q 026724 172 SATPL 176 (234)
Q Consensus 172 ~a~~~ 176 (234)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87665
No 90
>smart00361 RRM_1 RNA recognition motif.
Probab=98.87 E-value=3.8e-09 Score=68.32 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=35.4
Q ss_pred CCCCCC--CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEE
Q 026724 2 PKDQGS--KAHRGIGFITFASADSVENLMV--DTHELGGSTVVV 41 (234)
Q Consensus 2 ~rD~~t--g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v 41 (234)
+.|+.| +++||||||+|.+.++|.+|+. ++..+.|+.|.+
T Consensus 26 ~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 26 YIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred EeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 456666 9999999999999999999994 788999999976
No 91
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.84 E-value=2.4e-09 Score=81.17 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=42.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~ 45 (234)
||+|+-|+.++|||||.|.+..||+.|| +++.+|+|+.|+|+.|.
T Consensus 45 IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 45 IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 7999999999999999999999999999 47889999999999875
No 92
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=6.4e-09 Score=80.67 Aligned_cols=71 Identities=32% Similarity=0.716 Sum_probs=63.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~~ 177 (234)
.++||++||+.+.+.+|+.+|..||.|..|.+. .+|+||+|++..+|..|+ ++..+|.+..+.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 479999999999999999999999999998884 589999999999999998 57889999888888887654
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=2.2e-09 Score=88.20 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCcc
Q 026724 6 GSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (234)
..|+..|=|||.|+.+++|+.||. +...|.-|.|.+-.+...+-.+-...... . .... ....+...
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s-~-pLi~-----------~~~sp~~p 267 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVS-E-PLIP-----------GLTSPLLP 267 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcc-c-cccC-----------CCCCCCCC
Confidence 358899999999999999999995 45567777777765543222110000000 0 0000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCc-eeE--EEee-cCCC-CcceEEEEEcChHHHHHHHhc
Q 026724 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILD--VYVP-KRTG-HRGFGFVTFAEEVVADRVSRR 159 (234)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~--~~~~-~~~~-~~g~afV~f~~~~~a~~A~~~ 159 (234)
.. .....+......+|-+++||+..+.++|.++|..|-. |.. |.++ ...| ..|-|||+|.+.++|.+|..+
T Consensus 268 ~~----p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk 343 (508)
T KOG1365|consen 268 GG----PARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQK 343 (508)
T ss_pred CC----ccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHH
Confidence 00 0011112334678999999999999999999998864 333 5555 5566 889999999999999999754
Q ss_pred CC--ccCCeEeEEEeCC
Q 026724 160 SH--EICGQQVAIDSAT 174 (234)
Q Consensus 160 ~~--~~~g~~i~v~~a~ 174 (234)
.| ....|-|+|--+.
T Consensus 344 ~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 344 CHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHHhhcccceEEEeecc
Confidence 33 3347788886553
No 94
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.76 E-value=4.1e-08 Score=77.84 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
.....+|+|.|||+.++++||+++|..|+.++.+.|. ...+ +.|.|-|.|...++|.+|+. ++..++|+.|++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3345789999999999999999999999988888888 6667 99999999999999999985 667999999998876
Q ss_pred CCCC
Q 026724 174 TPLD 177 (234)
Q Consensus 174 ~~~~ 177 (234)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5443
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.75 E-value=6.9e-08 Score=78.26 Aligned_cols=108 Identities=23% Similarity=0.391 Sum_probs=75.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccC--CCCCCCCCccCCCCCCCCCCccchhhhhhh
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP--KEDDFRPVGRMSHGGYGAYNAYISAATRYA 76 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
|+.|+.|++++|||||+|.+.++|..|++ ++..|.|++|.|.++.. ......... . ......
T Consensus 147 ~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~---~~~~~~ 212 (306)
T COG0724 147 LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN-----------L---DASFAK 212 (306)
T ss_pred eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc-----------c---chhhhc
Confidence 46788899999999999999999999995 56799999999999754 111100000 0 000000
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee
Q 026724 77 ALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
...............+++.+++..++..++..+|..++.+..+.+.
T Consensus 213 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 213 ------------KLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ------------cccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 0000111124567889999999999999999999999999776665
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.1e-09 Score=79.04 Aligned_cols=49 Identities=35% Similarity=0.584 Sum_probs=44.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
||-|-.++++||||||+|+..|||.+||. |..+|.||.|+|.+|.|..-
T Consensus 42 iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 42 IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred cccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 57889999999999999999999999994 56699999999999987654
No 97
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=1.1e-07 Score=75.41 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
..+...+||+|+.+.+|.++++.+|+.||.|..+.|+ +..+ +++|+||+|.+.+.++.|+. ++..|.++.+.|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 5677899999999999999999999999999988887 5565 89999999999999999985 889999999999887
Q ss_pred CCC
Q 026724 174 TPL 176 (234)
Q Consensus 174 ~~~ 176 (234)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 655
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.70 E-value=4.9e-07 Score=73.74 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=100.3
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
|+-||=|.|.|-..|+++-|++ +...|.|+.|+|+.|.-............ ......-.+...++.... +
T Consensus 180 G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~-------k~k~~~~kk~~k~q~k~~-d 251 (382)
T KOG1548|consen 180 GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKE-------KGKCKDKKKLKKQQQKLL-D 251 (382)
T ss_pred CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCccccc-------ccccccHHHHHHHHHhhc-c
Confidence 6789999999999999999994 78889999999998864322111110000 000000001111111100 0
Q ss_pred CCCCCCCCCCCCCCCCCEEEEeCCC----CCCC-------HHHHHHHHhhcCceeEEEee-cCCCCcceEEEEEcChHHH
Q 026724 86 HPGSFYGRGESSQRIGKKIFVGRLP----QEAT-------AEDLRRYFSRFGRILDVYVP-KRTGHRGFGFVTFAEEVVA 153 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~nl~----~~~~-------~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a 153 (234)
..... ..+......++|.|.||= ...+ +++|.+-+++||.|..|.|. +. +.|.+-|.|.+.++|
T Consensus 252 w~pd~--~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h--PdGvvtV~f~n~eeA 327 (382)
T KOG1548|consen 252 WRPDR--DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH--PDGVVTVSFRNNEEA 327 (382)
T ss_pred cCCCc--cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC--CCceeEEEeCChHHH
Confidence 00000 111224456789999882 2223 45677789999999999887 33 579999999999999
Q ss_pred HHHH--hcCCccCCeEeEEEeCCCC
Q 026724 154 DRVS--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 154 ~~A~--~~~~~~~g~~i~v~~a~~~ 176 (234)
..|| +++..+.||.|.......+
T Consensus 328 ~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 328 DQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHhcCeeecceEEEEEEeCCc
Confidence 9998 5778999999998865443
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.66 E-value=2.5e-07 Score=71.21 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=65.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee---cCCC-CcceEEEEEcChHHHHHHH--hcCCccC---CeEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRTG-HRGFGFVTFAEEVVADRVS--RRSHEIC---GQQV 168 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~---~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~---g~~i 168 (234)
....++|||.+||.++...+|..+|..|--.+.+.|. +... .+-+|||+|.+..+|.+|+ +++..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3347899999999999999999999998766666555 3333 5689999999999999997 4666554 6789
Q ss_pred EEEeCCCCCCCCC
Q 026724 169 AIDSATPLDDAGP 181 (234)
Q Consensus 169 ~v~~a~~~~~~~~ 181 (234)
+|++|+.......
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 9998876654443
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.58 E-value=2.5e-06 Score=70.37 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=89.3
Q ss_pred cceEEEEEcCHHHHHHHHh----cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCC
Q 026724 11 RGIGFITFASADSVENLMV----DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~----~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (234)
+--|.|+|++.+.|++++. +...|.|+...+.++.++.-.....
T Consensus 67 ~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~-------------------------------- 114 (494)
T KOG1456|consen 67 KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGD-------------------------------- 114 (494)
T ss_pred cceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCCC--------------------------------
Confidence 3469999999999999992 3557888888888775543211100
Q ss_pred CCCCCCCCCCCCCCCCEEEEe--CCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCc
Q 026724 87 PGSFYGRGESSQRIGKKIFVG--RLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHE 162 (234)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~--nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~ 162 (234)
....+...|.+. |--+.+|-+-|..++...|+|..|.|.+.+ ---|.|+|++.+.|++|- +|+..
T Consensus 115 ---------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 115 ---------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred ---------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--ceeeEEeechhHHHHHHHhhccccc
Confidence 012234445444 445678999999999999999999998543 345899999999999986 56665
Q ss_pred cC-C-eEeEEEeCCCCC
Q 026724 163 IC-G-QQVAIDSATPLD 177 (234)
Q Consensus 163 ~~-g-~~i~v~~a~~~~ 177 (234)
|. | ..|+|+||+|..
T Consensus 184 IYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ccccceeEEEEecCcce
Confidence 43 3 589999999864
No 101
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.2e-07 Score=75.74 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=47.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCcc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGR 56 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~ 56 (234)
||+|+.||+|||||||+|+++.+..+|.+ .+..|+|+.|.|.+-..+......+.+
T Consensus 133 lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~PRR 190 (335)
T KOG0113|consen 133 LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLPRR 190 (335)
T ss_pred EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccccccc
Confidence 68999999999999999999999999995 578999999999987766555544443
No 102
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=3.8e-08 Score=75.37 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=63.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC--CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG--HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~--~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
.....+|||+||...++|+.|.++|-+-|+|..|.|++... .| ||||.|.++.+..-|+ +++..+.++.+.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 45678999999999999999999999999999999983333 45 9999999999999886 5888888877777653
No 103
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=81.76 Aligned_cols=78 Identities=23% Similarity=0.386 Sum_probs=67.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cC----CC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KR----TG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVA 169 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~----~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~ 169 (234)
++.+++|||+||++.++++.|...|..||+|..|+|+ .. .. .+-|+||.|.+..+|++|+. ++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5678899999999999999999999999999999998 11 12 57899999999999999984 67788999999
Q ss_pred EEeCCC
Q 026724 170 IDSATP 175 (234)
Q Consensus 170 v~~a~~ 175 (234)
+-|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999843
No 104
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.50 E-value=1.2e-07 Score=71.99 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
-|++.||.|||||||+|+++|.|+-|-+ |+..|.++-|.|.+--+.
T Consensus 83 sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 83 SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 4789999999999999999999999984 677889999999876543
No 105
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.50 E-value=3.8e-06 Score=70.09 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCEEEEeCCCC-CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 101 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 101 ~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
...|.|.||.. .+|.+.|..+|.-||.|..|.|... .+--|.|+|.+...|+-|+ ++++.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n--kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN--KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec--CCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999965 5799999999999999999999943 2467999999999999998 58999999999999886
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.44 E-value=7.5e-06 Score=67.65 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=87.9
Q ss_pred cceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCc-cchhhhhhhhcCCCCccCCC
Q 026724 11 RGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNA-YISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (234)
-|-|.|++.|..+.++|+ +|+..+.|.+|.|+.+...--..-..- ...++...... ..+...|+..........
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pf-lLpDgSpSfKdys~SkNnRFssp~qAsKNr-- 401 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPF-LLPDGSPSFKDYSGSKNNRFSSPEQASKNR-- 401 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCce-ecCCCCcchhhcccccccccCChhHhhccc--
Confidence 478999999999999999 578888999999987654322211000 01111111111 111122221111111111
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEeecC-CCCcceEEEEEcChHHHHHHHh--cCCcc
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKR-TGHRGFGFVTFAEEVVADRVSR--RSHEI 163 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~--~~~~~ 163 (234)
-..+++.|..-|.|..+||+.|.++|..-.. -.+|+|... +....-+.++|++.++|..||. |...|
T Consensus 402 ---------Iq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi 472 (494)
T KOG1456|consen 402 ---------IQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPI 472 (494)
T ss_pred ---------ccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccc
Confidence 1456889999999999999999999976654 355666621 2233457999999999999984 44444
Q ss_pred CC
Q 026724 164 CG 165 (234)
Q Consensus 164 ~g 165 (234)
.+
T Consensus 473 ~~ 474 (494)
T KOG1456|consen 473 EG 474 (494)
T ss_pred cC
Confidence 43
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=5.7e-08 Score=72.37 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~ 47 (234)
|+||+.||+|+||||+.|++.....-|+ .|+..|.||.|+|......
T Consensus 67 LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 67 LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 6899999999999999999999999999 4688999999999876544
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.3e-07 Score=80.02 Aligned_cols=70 Identities=26% Similarity=0.447 Sum_probs=61.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVA 169 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~ 169 (234)
+....+|+|-|||..+++++|+.+|+.||+|+.|+..+. .++..||+|-|..+|+.|++ +..++.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 566789999999999999999999999999999665433 57999999999999999984 67788888877
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.39 E-value=1.6e-06 Score=70.79 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=66.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEee-cCCC-CcceEEEEEcChHHHHHHH--hcCCccCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVP-KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICG 165 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~-~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g 165 (234)
......|||.|||.++|.+++.++|++||.|.. |.|- ...| .+|=|.+.|...+++.-|+ ++...|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345667999999999999999999999998743 4555 4446 8999999999999999997 57789999
Q ss_pred eEeEEEeCCC
Q 026724 166 QQVAIDSATP 175 (234)
Q Consensus 166 ~~i~v~~a~~ 175 (234)
+.|+|+.|+=
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998863
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.38 E-value=9.6e-07 Score=54.25 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=31.6
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeec
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRA 44 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a 44 (234)
+++|||+|.+.++|++|+. ++..+.|++|+|.+|
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6999999999999999995 788999999999985
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=2.9e-06 Score=70.23 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=89.5
Q ss_pred CCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 7 SKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
.|+-.|.|.|.|.|.|.-+.|++ ..|.+.++.|.|-.+....--.-..
T Consensus 98 qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iag------------------------------- 146 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAG------------------------------- 146 (508)
T ss_pred hhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecC-------------------------------
Confidence 35667899999999999999997 4778899999998776432111000
Q ss_pred CCCCCCCCCCC-CCCCCCEEEEeCCCCCCCHHHHHHHHhhcC----ceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh
Q 026724 86 HPGSFYGRGES-SQRIGKKIFVGRLPQEATAEDLRRYFSRFG----RILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G----~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~ 158 (234)
..+...... ....--.|-+++||+++++.|+.++|.+-- -++.|.++ +..+ ..|-|||.|..+++|+.||.
T Consensus 147 --g~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 147 --GTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred --CccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence 000000000 012234567789999999999999996322 33455555 5455 89999999999999999996
Q ss_pred cCC-ccCCeEeEEEeC
Q 026724 159 RSH-EICGQQVAIDSA 173 (234)
Q Consensus 159 ~~~-~~~g~~i~v~~a 173 (234)
+.. .|.-|-|++-.+
T Consensus 225 khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 225 KHRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 544 444445555433
No 112
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.28 E-value=6.7e-06 Score=67.63 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=68.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEIC 164 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~ 164 (234)
.....+|||-+||..+++++|.++|.+++.|.. |.|- +.|+ .|+-|.|+|++...|+.||. +...++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455678999999999999999999999998843 2222 6677 99999999999999999985 677999
Q ss_pred CeEeEEEeCCCCCC
Q 026724 165 GQQVAIDSATPLDD 178 (234)
Q Consensus 165 g~~i~v~~a~~~~~ 178 (234)
+..|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876653
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.27 E-value=9.2e-07 Score=76.09 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|+-|+.||++|||||++|.+.++|+.|+. |+.++.||+|+|.|+.....
T Consensus 50 ~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 50 LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 46799999999999999999999999995 68899999999999876544
No 114
>smart00360 RRM RNA recognition motif.
Probab=98.27 E-value=1.6e-06 Score=54.91 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=34.8
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEe
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVD 42 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~ 42 (234)
++++.+++++|||||+|.+.++|.+|+. ++..+.++.|.|.
T Consensus 29 ~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 29 VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 4556688999999999999999999995 4678899998873
No 115
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.27 E-value=1.3e-06 Score=56.20 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=32.7
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEE
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVV 40 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~ 40 (234)
+++++ ++++|+|||+|.+.++|.+|+. +++.|+|+.|+
T Consensus 31 ~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 31 IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 45666 8999999999999999999995 45899999884
No 116
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.25 E-value=1.2e-06 Score=55.96 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEE
Q 026724 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVV 40 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~ 40 (234)
.++.++|||||+|++.++|++|++ +++.|.|+.|+
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 578999999999999999999995 68899999885
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.2e-06 Score=79.09 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=83.7
Q ss_pred CCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCcc
Q 026724 6 GSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (234)
.+++-||+|+|+|.+++++.+||. +...+.|
T Consensus 704 n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------------------------------------------ 735 (881)
T KOG0128|consen 704 NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------------------------------------------ 735 (881)
T ss_pred hccccccceeeEeecCCchhhhhhhhhhhhhh------------------------------------------------
Confidence 568899999999999999999995 2222222
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHhc--C
Q 026724 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSRR--S 160 (234)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~~--~ 160 (234)
...|+|.|+|+..|.++|+.++..+|.+++++++ ...+ ++|.+||.|.+..++.+++.. .
T Consensus 736 ----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 ----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred ----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchh
Confidence 1358999999999999999999999999998877 3344 999999999999999998753 3
Q ss_pred CccCCeEeEEEeCCC
Q 026724 161 HEICGQQVAIDSATP 175 (234)
Q Consensus 161 ~~~~g~~i~v~~a~~ 175 (234)
..+.-+.+.|..+.|
T Consensus 800 ~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcCccccccCC
Confidence 344555566666555
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.2e-05 Score=67.45 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=60.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhc-CCcc----CCeEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRR-SHEI----CGQQV 168 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~-~~~~----~g~~i 168 (234)
-.+.++||||+||.-++.++|..+|+ -||.|..+-|- .+-+ ++|-|=|+|.+..+-.+||.. ...| -.++|
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRV 446 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRV 446 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceee
Confidence 56789999999999999999999998 69999998887 3455 999999999999999999853 2222 23466
Q ss_pred EEEe
Q 026724 169 AIDS 172 (234)
Q Consensus 169 ~v~~ 172 (234)
+|+-
T Consensus 447 EIkP 450 (520)
T KOG0129|consen 447 EIKP 450 (520)
T ss_pred eecc
Confidence 6653
No 119
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=9.1e-07 Score=71.75 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=36.7
Q ss_pred CCccceEEEEEcCHHHHHHHHhc--CceeCCcEEEEeeccCCC
Q 026724 8 KAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~~--~~~i~gr~i~v~~a~~~~ 48 (234)
.-|||||||+|++.+||++|-++ +..|.||+|+|+.|..+-
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 45999999999999999999964 669999999999998764
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.19 E-value=6.6e-06 Score=72.91 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=95.9
Q ss_pred CCCCCCCccceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCC
Q 026724 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (234)
Q Consensus 3 rD~~tg~srG~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
+|+..+--.|-++|+|....++++|+.. ...+-.|.+.|..+........+............ ..+..+
T Consensus 344 ~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~----------~~hg~p 413 (944)
T KOG4307|consen 344 ENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQ----------NNHGRP 413 (944)
T ss_pred hhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCCCccc----------ccCCCC
Confidence 3444343478999999999999999964 44556788877655433221111110000000000 001111
Q ss_pred CccCCCCCCCCC-CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE-EEee-cCCC-CcceEEEEEcChHHHHHHH
Q 026724 82 TLYDHPGSFYGR-GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVP-KRTG-HRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~-~~~~-~~g~afV~f~~~~~a~~A~ 157 (234)
...+......+. .........+|||..||..+++.++.++|...-.|++ |.|. -.++ .++.|||+|..++++..|+
T Consensus 414 ~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~ 493 (944)
T KOG4307|consen 414 IAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTAS 493 (944)
T ss_pred CCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhh
Confidence 111100000000 1122456789999999999999999999988777776 6665 3344 7899999999988888886
Q ss_pred h--cCCccCCeEeEEE
Q 026724 158 R--RSHEICGQQVAID 171 (234)
Q Consensus 158 ~--~~~~~~g~~i~v~ 171 (234)
+ ..+.+..+.|+|.
T Consensus 494 ~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 494 SVKTKFYPGHRIIRVD 509 (944)
T ss_pred hcccccccCceEEEee
Confidence 4 3446666777775
No 121
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=1.9e-06 Score=61.31 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=42.2
Q ss_pred CCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCC
Q 026724 3 KDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 3 rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~ 49 (234)
-|+.||-.||||.|+|++.++|++|| +|+..|.+++|.|.|+..+..
T Consensus 106 LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCC
Confidence 47889999999999999999999999 478899999999999976544
No 122
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.15 E-value=1.6e-05 Score=52.01 Aligned_cols=68 Identities=18% Similarity=0.464 Sum_probs=44.6
Q ss_pred CEEEEeCCCCCCCHHHH----HHHHhhcC-ceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 102 KKIFVGRLPQEATAEDL----RRYFSRFG-RILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l----~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
..|+|.|||.+.+...| ++++..|| .|..| ..+.|+|.|.+.+.|.+|.+ ++..+.|++|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 36999999999987664 55666776 56555 24789999999999999984 6779999999999984
Q ss_pred CC
Q 026724 175 PL 176 (234)
Q Consensus 175 ~~ 176 (234)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 33
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.14 E-value=2.8e-05 Score=53.12 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=55.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhc--CceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCcc----CCeEeEE
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEI----CGQQVAI 170 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~----~g~~i~v 170 (234)
++|.|.|||...|.++|.+++... |....+.++ -.+. +.|||||.|.+++.|.+-.. ++..+ ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988653 455556666 3345 89999999999999988653 44433 3456788
Q ss_pred EeCCC
Q 026724 171 DSATP 175 (234)
Q Consensus 171 ~~a~~ 175 (234)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 124
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=2.2e-06 Score=63.66 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=36.0
Q ss_pred CccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCC
Q 026724 9 AHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~ 49 (234)
..-|||||+|+++.||+.|+ +++..|+|..|+|+.+.-...
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 46799999999999999999 689999999999998875443
No 125
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.05 E-value=7.1e-06 Score=65.57 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+. ++|||||+|+++++|+.|| +++..|.|+.|.|.++...
T Consensus 36 I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 36 MQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred EeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 355553 5799999999999999999 5889999999999988644
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.03 E-value=2e-06 Score=67.55 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=42.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~ 48 (234)
++||+.|++|+||+||.|.+++|+..|+ +++..++.++|.++.+.-+.
T Consensus 222 viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 222 VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 5799999999999999999999999999 47889999999887665443
No 127
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.00 E-value=9.6e-06 Score=56.53 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=41.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhc-------CCccCCeEeEEEe
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRR-------SHEICGQQVAIDS 172 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-------~~~~~g~~i~v~~ 172 (234)
+.|+|.+++..++.++|+++|++||.|..|.+.+. -..|||.|.+.++|+.|+.. ...|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46889999999999999999999999999988743 24799999999999999742 2355665555543
No 128
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=9e-06 Score=57.39 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=39.9
Q ss_pred CCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccC
Q 026724 3 KDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (234)
Q Consensus 3 rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~ 46 (234)
-|+.|...-|||||+|.+.++|+.||. ++..|+.++|+|.|..-
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 478899999999999999999999995 78999999999998653
No 129
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.90 E-value=4.7e-05 Score=46.07 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=42.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 157 (234)
+.|-|.+.+.+..+.. ..+|..||+|..+.+.. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 4677888887777554 45888999999998863 2578999999999999985
No 130
>smart00362 RRM_2 RNA recognition motif.
Probab=97.90 E-value=2.4e-05 Score=49.52 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=30.8
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEe
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVD 42 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~ 42 (234)
+.++|+|||+|.+.++|++|++ ++..+.++.|.|+
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 6789999999999999999995 5678999998773
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.1e-05 Score=66.36 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~ 49 (234)
||||+.||.|--||||+|++.+++++|. |++..|+.+.|.|.++.+-..
T Consensus 271 VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 271 VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 5899999999999999999999999999 578899999999999865433
No 132
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.77 E-value=9e-05 Score=60.88 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=54.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
...++||+||-|.+|++||.+.+...| .+.++++. +.++ +||||.|...+..+.++.+ +-..+|.|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345799999999999999999888766 35566666 6677 9999999999887777765 3455777764333
No 133
>PLN03213 repressor of silencing 3; Provisional
Probab=97.68 E-value=4.4e-05 Score=65.43 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=35.2
Q ss_pred CCCCCccceEEEEEcCH--HHHHHHH--hcCceeCCcEEEEeeccC
Q 026724 5 QGSKAHRGIGFITFASA--DSVENLM--VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~--e~A~~Al--~~~~~i~gr~i~v~~a~~ 46 (234)
+.|| ||||||+|.+. +++.+|| +++..+.|+.|+|..|.+
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 5577 99999999987 6789999 478999999999999865
No 134
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.67 E-value=6.8e-05 Score=59.16 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=36.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~ 46 (234)
|++| +.+++||||+|+++++|+.|| +++..|.+++|.|..+..
T Consensus 37 I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 37 IIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred EecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4566 456689999999999999999 589999999999987654
No 135
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.66 E-value=0.00011 Score=46.65 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=32.0
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEee
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDR 43 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~ 43 (234)
++.+ .++|+|||+|.+.++|..|+. ++..+.++.|.|.+
T Consensus 34 ~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 34 DKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 3443 679999999999999999995 46678999998863
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.60 E-value=5.8e-06 Score=69.32 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=92.8
Q ss_pred cceEEEEEcCHHHHHHHHhc---CceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCC
Q 026724 11 RGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~~---~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (234)
-|||||...+...|.+|++. ..++.|+.+.|....++..
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq-------------------------------------- 78 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ-------------------------------------- 78 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH--------------------------------------
Confidence 48999999999999999963 3489999999988876643
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCC
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICG 165 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g 165 (234)
.++++-|.|+|+...++.|..++.+||.+..|..+...--....-|+|.+.+.+..|| ++++.+..
T Consensus 79 ------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 79 ------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred ------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 2456889999999999999999999999999877621112333457888888999998 46778889
Q ss_pred eEeEEEeCCCCC
Q 026724 166 QQVAIDSATPLD 177 (234)
Q Consensus 166 ~~i~v~~a~~~~ 177 (234)
..++|.|-....
T Consensus 147 ~~~k~~YiPdeq 158 (584)
T KOG2193|consen 147 QHLKVGYIPDEQ 158 (584)
T ss_pred hhhhcccCchhh
Confidence 999998865443
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=0.00019 Score=56.68 Aligned_cols=73 Identities=27% Similarity=0.413 Sum_probs=57.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHhc------CCccCCeEeEEEeC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSRR------SHEICGQQVAIDSA 173 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~~------~~~~~g~~i~v~~a 173 (234)
..|||.||+..++-+.|.+.|+.||.|....+. .+.+ ..+-++|.|...-.|.+|+.. +....++++-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 579999999999999999999999999775554 5555 788899999999888888632 12666777666554
Q ss_pred C
Q 026724 174 T 174 (234)
Q Consensus 174 ~ 174 (234)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=2e-05 Score=60.64 Aligned_cols=94 Identities=26% Similarity=0.403 Sum_probs=71.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++++. ++.| ||||.|+++-.+.-|+ +|+..|.++.|.|++-
T Consensus 41 ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r---------------------------------- 84 (267)
T KOG4454|consen 41 IPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR---------------------------------- 84 (267)
T ss_pred CCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc----------------------------------
Confidence 344444 6677 9999999999999999 4888888888877532
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeC----CCCCCCHHHHHHHHhhcCceeEEEeec-CCC-CcceEEEEEcChHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGR----LPQEATAEDLRRYFSRFGRILDVYVPK-RTG-HRGFGFVTFAEEVV 152 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~G~v~~~~~~~-~~~-~~g~afV~f~~~~~ 152 (234)
.|+ |...++++.+.+.|+.-+.+..+++.. ..+ ++.+.|+++.....
T Consensus 85 ---------------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 85 ---------------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred ---------------------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 223 556788999999999999999999982 234 88999998876655
Q ss_pred HHHHH
Q 026724 153 ADRVS 157 (234)
Q Consensus 153 a~~A~ 157 (234)
.-.++
T Consensus 138 ~P~~~ 142 (267)
T KOG4454|consen 138 VPFAL 142 (267)
T ss_pred CcHHh
Confidence 55554
No 139
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00046 Score=59.59 Aligned_cols=60 Identities=30% Similarity=0.584 Sum_probs=47.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee----cCCC--Ccc---eEEEEEcChHHHHHHHh
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP----KRTG--HRG---FGFVTFAEEVVADRVSR 158 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~----~~~~--~~g---~afV~f~~~~~a~~A~~ 158 (234)
..-+++|||++||++++|+.|...|..||.+. |.++ .... ++| |+|+.|+++.++..-|.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 55678999999999999999999999999864 4444 1111 567 99999999887776553
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=0.0001 Score=67.33 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=86.3
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
+.---||||.|.+.+.+-.|+. .+..|..-.+++.+-.++
T Consensus 410 ~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k-------------------------------------- 451 (975)
T KOG0112|consen 410 KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK-------------------------------------- 451 (975)
T ss_pred CcccchhhhhhhccccCcccchhhcCCccccCcccccccccc--------------------------------------
Confidence 3344588999999888888873 344444334444433221
Q ss_pred CCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCcc
Q 026724 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEI 163 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~ 163 (234)
....+.+||++|..++....|...|..||.|..|.+-.. .-|++|.|++...++.|+. .+..|
T Consensus 452 ------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 452 ------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcC
Confidence 345788999999999999999999999999999888632 4699999999999999974 45555
Q ss_pred CC--eEeEEEeCCCC
Q 026724 164 CG--QQVAIDSATPL 176 (234)
Q Consensus 164 ~g--~~i~v~~a~~~ 176 (234)
.+ +.+.|.++.+.
T Consensus 517 G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPP 531 (975)
T ss_pred CCCCcccccccccCC
Confidence 54 57888888654
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.45 E-value=0.00051 Score=61.37 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=59.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCcee-EEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 103 KIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
.|-|.|+|++++-+||.++|..|-.+. +|.+. .+.+ ..|-|.|.|++.++|.+|.+ +...|..++|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 788999999999999999999997664 45555 5566 89999999999999999974 67799999988764
No 142
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.44 E-value=0.00083 Score=46.18 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=50.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cC---------CCCcceEEEEEcChHHHHHHH-hcCCccCCeE-
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KR---------TGHRGFGFVTFAEEVVADRVS-RRSHEICGQQ- 167 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~---------~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~- 167 (234)
....|.|-+.|+. ....|.++|++||.|.+..-. +. .....+-.|+|+++.+|.+|| +|+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3566888899988 455677889999999877511 10 013578999999999999999 4788888864
Q ss_pred eEEEeCC
Q 026724 168 VAIDSAT 174 (234)
Q Consensus 168 i~v~~a~ 174 (234)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4566654
No 143
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.42 E-value=0.00045 Score=56.68 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=59.9
Q ss_pred CCCCEEEEeCCCCCCCHHH----H--HHHHhhcCceeEEEeecCC-C---Ccce--EEEEEcChHHHHHHHh--cCCccC
Q 026724 99 RIGKKIFVGRLPQEATAED----L--RRYFSRFGRILDVYVPKRT-G---HRGF--GFVTFAEEVVADRVSR--RSHEIC 164 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~----l--~~~f~~~G~v~~~~~~~~~-~---~~g~--afV~f~~~~~a~~A~~--~~~~~~ 164 (234)
....-+||-+||+.+..++ | .++|.+||.|..|.|-+.+ . --+. .||+|.+.|+|..||. ++..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999999886655 3 5899999999999887332 1 1122 3999999999999984 688999
Q ss_pred CeEeEEEeCCC
Q 026724 165 GQQVAIDSATP 175 (234)
Q Consensus 165 g~~i~v~~a~~ 175 (234)
||.|+..|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988754
No 144
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.0012 Score=55.77 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=51.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC-------CC--C-------cceEEEEEcChHHHHHHH
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------TG--H-------RGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-------~~--~-------~g~afV~f~~~~~a~~A~ 157 (234)
..++++|.+-|||.+-.-+.|.++|..+|.|+.|+|.+. .+ + +-+|+|+|+..+.|.+|.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 457899999999999999999999999999999999722 12 2 457999999999999996
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.26 E-value=0.00047 Score=47.08 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCcee----CCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHEL----GGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i----~gr~i~v~~a~~ 46 (234)
||.|..|+.+.|||||.|.++++|.+... ++..+ ..+...|.+|.-
T Consensus 35 LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAri 86 (97)
T PF04059_consen 35 LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARI 86 (97)
T ss_pred eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHh
Confidence 68899999999999999999999999885 45444 345567777653
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.21 E-value=0.00038 Score=55.45 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~ 46 (234)
|++|+.++.+||||||+|.+.+.+++|+. ++..|.++.|.|.+..-
T Consensus 133 i~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 133 VPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred eeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeee
Confidence 57899999999999999999999999995 88999999999987643
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.08 E-value=1.5e-05 Score=72.13 Aligned_cols=107 Identities=25% Similarity=0.213 Sum_probs=76.8
Q ss_pred eEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCCCCCC
Q 026724 13 IGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 91 (234)
Q Consensus 13 ~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (234)
++++.++...+++.|.. .+..+.++.+.|..+.++.......
T Consensus 616 ~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~k------------------------------------- 658 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFK------------------------------------- 658 (881)
T ss_pred hhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccC-------------------------------------
Confidence 66777777777777773 4556666666666555443211110
Q ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH
Q 026724 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 92 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~ 157 (234)
..+.......++||.||+..+.+.+|...|..++.+..+.+. ..++ .+|+|+|+|...+++.+||
T Consensus 659 -vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 659 -VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred -cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 000012345789999999999999999999999988777665 5666 8999999999999999987
No 148
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.05 E-value=0.0012 Score=45.15 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCC
Q 026724 6 GSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPK 47 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~ 47 (234)
.|...||-|||.|++..||.+|+ +++..++++.+.|-+..+.
T Consensus 52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 46678999999999999999999 4788999999999887653
No 149
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.96 E-value=0.0051 Score=44.96 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCCCEEEEeCCCC-----CC-CH---HHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeEe
Q 026724 99 RIGKKIFVGRLPQ-----EA-TA---EDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQV 168 (234)
Q Consensus 99 ~~~~~l~v~nl~~-----~~-~~---~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i 168 (234)
++..+|.|.=+.+ .. .+ .+|.+.|..||.+.-|+++. +.-+|+|.+-++|.+|+ +++..++|+.|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals~dg~~v~g~~l 99 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALSLDGIQVNGRTL 99 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHHGCCSEETTEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHccCCcEECCEEE
Confidence 3466777765541 12 22 26778888999998888874 35799999999999999 58999999999
Q ss_pred EEEeCCCCC
Q 026724 169 AIDSATPLD 177 (234)
Q Consensus 169 ~v~~a~~~~ 177 (234)
+|+...|..
T Consensus 100 ~i~LKtpdW 108 (146)
T PF08952_consen 100 KIRLKTPDW 108 (146)
T ss_dssp EEEE-----
T ss_pred EEEeCCccH
Confidence 999876643
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.90 E-value=0.0011 Score=55.45 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=56.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec---CCC---CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEe
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RTG---HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDS 172 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~---~~~---~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~ 172 (234)
..|.|.||.+.+|.++++.+|...|.|.++.|.. +.. ..-.|||.|.+...+..|. +....+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3799999999999999999999999999998873 211 4568999999999988884 555566666665553
No 151
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.003 Score=55.33 Aligned_cols=73 Identities=21% Similarity=0.419 Sum_probs=54.9
Q ss_pred CCCCEEEEeCCCCCC------CHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccC-CeE
Q 026724 99 RIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEIC-GQQ 167 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~-g~~ 167 (234)
.-...|+|.|+|--- -..-|..+|+++|+|..+.++ ...+ .+||.|++|.+..+|+.|++ +++.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 346789999998532 234567899999999999888 4434 99999999999999999995 555444 445
Q ss_pred eEEE
Q 026724 168 VAID 171 (234)
Q Consensus 168 i~v~ 171 (234)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 152
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.65 E-value=0.0046 Score=41.31 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=45.7
Q ss_pred EEEEEcCHHHHHHHHhc-Cc--eeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCCCCC
Q 026724 14 GFITFASADSVENLMVD-TH--ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 90 (234)
Q Consensus 14 aFV~F~~~e~A~~Al~~-~~--~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (234)
|.|+|++++-|++.+.. .| .+++..+.|...--.......-.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q----------------------------------- 45 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ----------------------------------- 45 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-----------------------------------
Confidence 68999999999999964 34 56677766653311111000000
Q ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Q 026724 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122 (234)
Q Consensus 91 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 122 (234)
.......++|-|.|||...++++|++.+
T Consensus 46 ----v~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 46 ----VFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ----EEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 0014457899999999999999998753
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.58 E-value=0.0015 Score=51.63 Aligned_cols=68 Identities=24% Similarity=0.463 Sum_probs=53.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CC---------CCc----ceEEEEEcChHHHHHHH--hcCCc
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RT---------GHR----GFGFVTFAEEVVADRVS--RRSHE 162 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~---------~~~----g~afV~f~~~~~a~~A~--~~~~~ 162 (234)
..-.||+++||+.++..-|+++|++||.|-.|.|.+ .+ +++ --++|+|.+...|..+. +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 456799999999999999999999999999988872 22 122 23689999999988864 67777
Q ss_pred cCCeE
Q 026724 163 ICGQQ 167 (234)
Q Consensus 163 ~~g~~ 167 (234)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77764
No 154
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.57 E-value=0.0077 Score=48.70 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCceeEEEeecCCC----CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 115 AEDLRRYFSRFGRILDVYVPKRTG----HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 115 ~~~l~~~f~~~G~v~~~~~~~~~~----~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
++++++.+++||.|..|.|....+ -.---||+|+..++|.+|+ +++..|.||.+...|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 457788999999999988771111 2234699999999999997 6888999999887764
No 155
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.42 E-value=0.027 Score=37.02 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 157 (234)
.....||. +|..+...||.++|+.||.|. |..+.+ .-|||...+.+.|..|+
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d----TSAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND----TSAFVALHNRDQAKVVM 59 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT----TEEEEEECCCHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC----CcEEEEeecHHHHHHHH
Confidence 34556666 999999999999999999975 445544 47999999999999886
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.39 E-value=0.0019 Score=51.13 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=46.0
Q ss_pred HHHHHHh-hcCceeEEEeecCCC--CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 117 DLRRYFS-RFGRILDVYVPKRTG--HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 117 ~l~~~f~-~~G~v~~~~~~~~~~--~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
+|...|+ +||+|+++.|-.+-+ -.|-++|.|...++|++|+ +++-.+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 899999987764433 6788999999999999998 47789999999988764
No 157
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.35 E-value=0.035 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhc---CceeEEEeecCCCCcceEEEEEcChHHHHHHHhc
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRF---GRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRR 159 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 159 (234)
..+|+|.++. +++.++|+.+|..| .....|.++.+ .-|-|.|.+.+.|.+||..
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHc
Confidence 4689999995 57888999999998 12456777755 2588999999999999854
No 158
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.17 E-value=0.006 Score=50.43 Aligned_cols=37 Identities=19% Similarity=0.453 Sum_probs=33.0
Q ss_pred ccceEEEEEcCHHHHHHHHh---cCceeCCcEEEEeeccC
Q 026724 10 HRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATP 46 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~---~~~~i~gr~i~v~~a~~ 46 (234)
.+++|||+|.+.+.|+.|.+ +...|+|+.|.|.|..+
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 46799999999999999996 45589999999999987
No 159
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.15 E-value=0.0067 Score=53.53 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHh-hcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcCC-----ccCCeEeEE
Q 026724 97 SQRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EICGQQVAI 170 (234)
Q Consensus 97 ~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~-----~~~g~~i~v 170 (234)
....++.|||.||-.-.|.-+|+.++. ..|.|++. +|.. .|..|||.|.+.++|.+....+| .-+.+.|.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 466788999999999999999999998 46666666 5421 36789999999999988653322 446678888
Q ss_pred EeCCC
Q 026724 171 DSATP 175 (234)
Q Consensus 171 ~~a~~ 175 (234)
.|+..
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 88753
No 160
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.04 E-value=0.0074 Score=53.08 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=38.0
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHhcCc--eeCCcEEEEeeccC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATP 46 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~~~~--~i~gr~i~v~~a~~ 46 (234)
+.+..|--.|.|+||++.+.++|.+||++.| +|.|+.|.|..+..
T Consensus 438 VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 438 VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 3445566678999999999999999998766 89999999998754
No 161
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.92 E-value=0.0059 Score=51.79 Aligned_cols=74 Identities=19% Similarity=0.394 Sum_probs=57.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCc--eeEEEeecCCCCcceEEEEEcChHHHHHHHh--cC-CccCCeEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RS-HEICGQQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~-~~~~g~~i~v~~a~~~ 176 (234)
++||++||.+.++..+|+.+|...-. -..+ ++ ..+|+||...+...|.+|++ ++ .++.|.++.|....++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 47999999999999999999965411 1111 22 35899999999999999985 33 3899999999998887
Q ss_pred CCCC
Q 026724 177 DDAG 180 (234)
Q Consensus 177 ~~~~ 180 (234)
..+.
T Consensus 77 kqrs 80 (584)
T KOG2193|consen 77 KQRS 80 (584)
T ss_pred HHHh
Confidence 6543
No 162
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.89 E-value=0.06 Score=39.12 Aligned_cols=74 Identities=20% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCCCCEEEEeCCCCCC-CHHH---HHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcCC-ccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEA-TAED---LRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~-~~~~---l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~-~~~g~~i~v~~ 172 (234)
.++..+|.|.=|..++ ..+| +...++.||+|.+|.+.- +--|.|.|.+..+|.+|+...+ ...|..+.+.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence 4567788888776665 2334 445567899999998872 3469999999999999986433 66677788877
Q ss_pred CCC
Q 026724 173 ATP 175 (234)
Q Consensus 173 a~~ 175 (234)
-.+
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 653
No 163
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.77 E-value=0.012 Score=53.52 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=37.0
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
-+||+|||++....+|.+||. +.+.+..+.|+|.|+..+...
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 579999999999999999994 578999999999999876543
No 164
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.67 E-value=0.026 Score=48.61 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=56.2
Q ss_pred CEEEEeCCCCCC-CHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~~~ 176 (234)
+.|-+.-.|+.. +-++|...|.+||+|..|.|-.. --.|.|+|.+..+|-.|. .....|+++.|+|.|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 444444455555 67899999999999999988622 246899999999996664 5778999999999998873
No 165
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.66 E-value=0.069 Score=35.22 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=26.4
Q ss_pred ccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecc
Q 026724 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~ 45 (234)
+.+-|.|.|.+.+.|++|. +++..+.|++|.|.+..
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 5688999999999999999 47888999999998873
No 166
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.66 E-value=0.11 Score=45.88 Aligned_cols=69 Identities=10% Similarity=0.233 Sum_probs=53.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh--cCceeEEEee-cCCCCcceEEEEEcChHHHHHHH----hcCCccCCeEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSR--FGRILDVYVP-KRTGHRGFGFVTFAEEVVADRVS----RRSHEICGQQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~----~~~~~~~g~~i~v 170 (234)
...-|.|.|+-||..+-+++++.+|+. |-.+.+|.+- .+ -=||+|++..||+.|. +.-++|.|++|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 455677888999999999999999964 7788888876 32 2489999999999995 2455777776644
Q ss_pred E
Q 026724 171 D 171 (234)
Q Consensus 171 ~ 171 (234)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 167
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.63 E-value=0.017 Score=48.52 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=44.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCCCcceEEEEEcChHHHHHHHh
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
.+|+|.+|+..+...++.+.|..+|.|....+. .. ..-+|-|+|....+...|+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~--~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS--RSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC--CCcchhhhHhhhhhHHHHHH
Confidence 679999999999999999999999999877665 22 24566688887777777764
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.46 E-value=0.0097 Score=54.94 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=57.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
...+.+||++||+..+++.+|+..|..+|.|.+|.|- ..-+ --.|+||.|.+.+.+..|.. .+..|..-.+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 5567899999999999999999999999999999887 2222 34689999999988888753 333333334444444
No 169
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.87 E-value=0.45 Score=38.97 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh-cCCccCCeE-eEEEeCCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQ-VAIDSATPL 176 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~-i~v~~a~~~ 176 (234)
..-|-|-++|+...- .|..+|++||.|++..... .-.|-+|.|.+.-+|++||. ++..|++.. |-|+-+..+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~---ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPS---NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCC---CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 455666688776554 4667899999998765542 24688999999999999994 677777764 345554433
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.58 E-value=0.051 Score=45.29 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=41.7
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
-+|+.|+++||-|-|+|++.-.|+.||. +...+.+.+|+|-.|..+.
T Consensus 107 y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 107 YTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 4789999999999999999999999996 5788999999998887655
No 171
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.51 E-value=0.027 Score=46.56 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCCEEEEeCCCCCCCHHH-H--HHHHhhcCceeEEEeecCC----C--CcceEEEEEcChHHHHHHHh--cCCccCCeEe
Q 026724 100 IGKKIFVGRLPQEATAED-L--RRYFSRFGRILDVYVPKRT----G--HRGFGFVTFAEEVVADRVSR--RSHEICGQQV 168 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~-l--~~~f~~~G~v~~~~~~~~~----~--~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i 168 (234)
...-+||-+|+..+..++ | .+.|.+||.|..|.+.+++ . ...-++|+|...++|..||. ++..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 446688889988775444 4 3688999999998877432 1 22337999999999999986 4557777777
Q ss_pred EEEeCCCC
Q 026724 169 AIDSATPL 176 (234)
Q Consensus 169 ~v~~a~~~ 176 (234)
+..+..++
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77666554
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.96 E-value=0.11 Score=45.88 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=31.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeC-CcEEEEee
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELG-GSTVVVDR 43 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~-gr~i~v~~ 43 (234)
+|-|..+| ++||.|++|++..+|+.|++ +++.|+ .++..|..
T Consensus 96 ~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 96 YPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred eccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 35577755 99999999999999999995 566554 45555543
No 173
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.29 E-value=4.6 Score=37.36 Aligned_cols=69 Identities=6% Similarity=0.035 Sum_probs=44.3
Q ss_pred CEEEEe-CCCCCCCHHHHHHHHhhcCcee-----EEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 102 KKIFVG-RLPQEATAEDLRRYFSRFGRIL-----DVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 102 ~~l~v~-nl~~~~~~~~l~~~f~~~G~v~-----~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
.++||. +=-..++..+|..++..-+.|. .|.|. ..|.||+..... |...+ ++...+.|+.|.|+.+
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPKGM-PGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcChhh-HHHHHHHhccccccCCceEEEEC
Confidence 446653 2245678888888887665543 34553 358899876433 44444 3556899999999987
Q ss_pred CCC
Q 026724 174 TPL 176 (234)
Q Consensus 174 ~~~ 176 (234)
...
T Consensus 561 ~~~ 563 (629)
T PRK11634 561 GDA 563 (629)
T ss_pred CCC
Confidence 533
No 174
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.09 E-value=0.07 Score=44.01 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~ 50 (234)
++.++.|+.++|||||.|.+..++..+++ ..+.+.++++.+....+....
T Consensus 217 ~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 217 LPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred cCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCccc
Confidence 45678899999999999999999999998 567899999999988766443
No 175
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=91.55 E-value=0.21 Score=43.33 Aligned_cols=39 Identities=28% Similarity=0.557 Sum_probs=32.7
Q ss_pred CCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccC
Q 026724 8 KAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATP 46 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~ 46 (234)
+++..||||+|++.++++.||+ +...|++++|.|+.-.+
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4444999999999999999996 57789999999986543
No 176
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.33 E-value=0.94 Score=34.85 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=41.8
Q ss_pred CHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--c--CCccCCeEeEEEeCCCCC
Q 026724 114 TAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--R--SHEICGQQVAIDSATPLD 177 (234)
Q Consensus 114 ~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~--~~~~~g~~i~v~~a~~~~ 177 (234)
..+.|+++|..++.+..+.+.+. -+-..|.|.+.++|..|.. + ...+.|..++|-++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999888776643 3457899999999999964 4 568999999999985443
No 177
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=0.33 Score=42.85 Aligned_cols=142 Identities=19% Similarity=0.193 Sum_probs=77.9
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCC
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 81 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
++.|-..+|..||+|-|..+|+.|++ +..+|.|+.|.. +........- +.+ ..-......+
T Consensus 105 ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~----~~~~~~~~~~---~~~----------~~~~~~~~~p 167 (549)
T KOG4660|consen 105 IRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR----PGGARRAMGL---QSG----------TSFLNHFGSP 167 (549)
T ss_pred hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC----CCcccccchh---ccc----------chhhhhccch
Confidence 35677889999999999999999995 677888888861 1111111000 000 0000011111
Q ss_pred CccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhc-C
Q 026724 82 TLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRR-S 160 (234)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-~ 160 (234)
.....+.. -.-..+|+ .|++..+...++..|+-+|.+.. +.... ..---|++|.+..++..++.. +
T Consensus 168 ~a~s~pgg---------~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~--~~hq~~~~~~~~~s~a~~~~~~G 234 (549)
T KOG4660|consen 168 LANSPPGG---------WPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPL--LNHQRFVEFADNRSYAFSEPRGG 234 (549)
T ss_pred hhcCCCCC---------CcCCccee-eeccchhhhhhhcchhccCcccc-ccccc--hhhhhhhhhccccchhhcccCCc
Confidence 11111111 01223333 38888888777778888888765 33210 122457888888887555532 4
Q ss_pred CccCCeEeEEEeCCC
Q 026724 161 HEICGQQVAIDSATP 175 (234)
Q Consensus 161 ~~~~g~~i~v~~a~~ 175 (234)
..+.+....+.++.+
T Consensus 235 ~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 235 FLISNSSGVITFSGP 249 (549)
T ss_pred eecCCCCceEEecCC
Confidence 455555555555544
No 178
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.22 E-value=0.17 Score=45.51 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=56.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..+..++||+|+...+..+-++.+...+|.|.++... -|+|++|..+.....|+. ....+++..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567799999999999999999999999999877553 399999999998888863 45577777766654
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.42 E-value=0.35 Score=36.93 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-cCce---eEEE--ee-cCCC--CcceEEEEEcChHHHHHHHh--cCCccCC---
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSR-FGRI---LDVY--VP-KRTG--HRGFGFVTFAEEVVADRVSR--RSHEICG--- 165 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v---~~~~--~~-~~~~--~~g~afV~f~~~~~a~~A~~--~~~~~~g--- 165 (234)
...+|.|++||+++||+++.+.++. ++.. ..+. +. .... .-.-|||.|.+.+++..-.. +++.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999999887766 5544 3333 11 1111 33568999999998666543 4442221
Q ss_pred --eEeEEEeCC
Q 026724 166 --QQVAIDSAT 174 (234)
Q Consensus 166 --~~i~v~~a~ 174 (234)
....|++|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 345666664
No 180
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.39 E-value=0.54 Score=44.41 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=9.4
Q ss_pred CCCccceEEEEEcCHHH
Q 026724 7 SKAHRGIGFITFASADS 23 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~ 23 (234)
.|+-++|+--.|++.-.
T Consensus 898 ~g~q~~~~g~kfsdhva 914 (1282)
T KOG0921|consen 898 SGTQRKFAGNKFSDHVA 914 (1282)
T ss_pred ccchhhccccccccchh
Confidence 45556666666655433
No 181
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=89.43 E-value=0.8 Score=36.77 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=37.8
Q ss_pred CCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
+|+|.|.|=|.|...+||++||+ ++..|+|+++.+....+....
T Consensus 120 ~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 120 AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcccc
Confidence 58999999999999999999995 678999999999887655443
No 182
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.36 E-value=0.24 Score=36.62 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=58.2
Q ss_pred CccceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccCCC
Q 026724 9 AHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (234)
...++..++|.+.+++++++.. ...+.+..+.++.-.+........
T Consensus 53 l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~--------------------------------- 99 (153)
T PF14111_consen 53 LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK--------------------------------- 99 (153)
T ss_pred eCCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc---------------------------------
Confidence 3568899999999999999964 457778777776655432211000
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCC-CCHHHHHHHHhhcCceeEEEee
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
......-|-|.|||.. .+++-|+.+-+.+|.+..+...
T Consensus 100 ---------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 100 ---------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ---------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 0112233556799988 4888899999999999888765
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.50 E-value=0.78 Score=33.69 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=28.3
Q ss_pred eEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccC
Q 026724 13 IGFITFASADSVENLM-VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 13 ~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~ 46 (234)
-=+|+|.+-+.|-+|+ +++..+.|+.|.|+.-.+
T Consensus 72 ~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 72 TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 4589999999999999 589999999999987654
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=87.11 E-value=0.4 Score=38.33 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=32.2
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
.-+|=++|.|..+|+|++|++ |+..+.|++|...+..
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 456789999999999999994 7889999999988764
No 185
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.85 E-value=1.7 Score=35.36 Aligned_cols=34 Identities=29% Similarity=0.615 Sum_probs=27.0
Q ss_pred CCEEEEeCCCCC------------CCHHHHHHHHhhcCceeEEEee
Q 026724 101 GKKIFVGRLPQE------------ATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 101 ~~~l~v~nl~~~------------~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
..+||+.+||-. .+++-|+..|+.||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 456777777632 3678899999999999998887
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=85.57 E-value=10 Score=26.55 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=43.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCcc
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEI 163 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~ 163 (234)
...+.+...|+.++-++|..+.+.+-. |..++|+++.. ++=.+.+.|.+.++|..-.. |+..+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344445556666677778766666654 56678876655 77789999999999888653 55533
No 187
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=85.38 E-value=0.6 Score=43.48 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=58.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCC--ccCCeEeEEEeCCCCCC
Q 026724 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSH--EICGQQVAIDSATPLDD 178 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~--~~~g~~i~v~~a~~~~~ 178 (234)
+.++-|.+-+.+-..|..+|++||.|.+++..++ -..|.|+|.+.+.|..|+. .+. .+.|-+.+|.+|+.-+-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 3455556667788899999999999999988754 3679999999999999873 333 55678899999987664
Q ss_pred CCC
Q 026724 179 AGP 181 (234)
Q Consensus 179 ~~~ 181 (234)
-.+
T Consensus 377 ~ep 379 (1007)
T KOG4574|consen 377 YEP 379 (1007)
T ss_pred ccC
Confidence 443
No 188
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.88 E-value=10 Score=24.30 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=34.0
Q ss_pred EEEEe-CCCCCCCHHHHHHHHhhcCc-----eeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 103 KIFVG-RLPQEATAEDLRRYFSRFGR-----ILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 103 ~l~v~-nl~~~~~~~~l~~~f~~~G~-----v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
+|||. +--..++..+|..++...+. |-.|.|.. .|+||+-... .|..++ ++...+.|++|.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45552 22346788899888876644 45566643 5899988754 455555 4667999999999865
No 189
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.26 E-value=1.5 Score=30.98 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=26.1
Q ss_pred EEEEeCCCCC---------CCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcCh
Q 026724 103 KIFVGRLPQE---------ATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEE 150 (234)
Q Consensus 103 ~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~ 150 (234)
.+.|-|++.. .+.+.|++.|+.|..++...+....++.++++|+|.+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 4566677543 35578999999998876443434445889999999864
No 190
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=81.01 E-value=3.7 Score=28.24 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=27.6
Q ss_pred ccceEEEEEcCHHHHHHHH-hcCceeCCcE-EEEeecc
Q 026724 10 HRGIGFITFASADSVENLM-VDTHELGGST-VVVDRAT 45 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al-~~~~~i~gr~-i~v~~a~ 45 (234)
....-.|+|.++.+|.+|| +|+..|.|.. +-|.+..
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred CCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence 3457889999999999999 5888998864 4466553
No 191
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.78 E-value=6.1 Score=25.03 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=40.9
Q ss_pred HHHHHHHhhcC-ceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCC
Q 026724 116 EDLRRYFSRFG-RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 116 ~~l~~~f~~~G-~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~ 176 (234)
++|.+.|...| .|.+|.-+ +.++ ....-||+++...+ .+.+.+-..|++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~-~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN-NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc-ccceeehHhhCCeEEEEecCCCC
Confidence 46777777766 56666555 3344 66778888876655 33455667889999999877654
No 192
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=79.34 E-value=5.2 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHHHHHHhhcC-ceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCC
Q 026724 116 EDLRRYFSRFG-RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 175 (234)
Q Consensus 116 ~~l~~~f~~~G-~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~ 175 (234)
.+|++.|+..| ++..+..+ ++++ +...-||+.....+-.. +.+-..|++++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcc
Confidence 46778888888 56777666 4444 66777888776533333 5667789999999876543
No 193
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=76.30 E-value=2.7 Score=25.15 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=16.9
Q ss_pred ccceEEEEEcCHHHHHHHH
Q 026724 10 HRGIGFITFASADSVENLM 28 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al 28 (234)
..-+.||+|++..+|++||
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 4568999999999999996
No 194
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=75.42 E-value=3 Score=34.94 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=27.6
Q ss_pred EEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCCC
Q 026724 14 GFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 14 aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|||+|++..+|..|++..+....+.+.+..|-+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccc
Confidence 7999999999999997555555566677776554443
No 195
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=71.62 E-value=4.3 Score=33.98 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=26.7
Q ss_pred EEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCC
Q 026724 143 GFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 143 afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~ 177 (234)
|||+|++..+|+.|++..+....+.+++..|....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcc
Confidence 79999999999999875555555667777775443
No 196
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=71.48 E-value=13 Score=30.49 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=36.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCce-eEEEeecCCCCcceEEEEEcCh
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKRTGHRGFGFVTFAEE 150 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~g~afV~f~~~ 150 (234)
..-|+|+||+.++.-.||+..+.+.+.+ .++.+. ++.+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCc
Confidence 4559999999999999999999887654 334332 2578899999764
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.25 E-value=20 Score=31.37 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhc-CceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEIC 164 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~ 164 (234)
+..|+|=.+|..++-.||..|+..+ -.|..++|+++.- ++=...|.|.+.++|..-.+ |+..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7889999999999999999988765 4578899997444 67778999999999988764 554433
No 198
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=71.20 E-value=5.2 Score=33.55 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=27.5
Q ss_pred EEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 15 FITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 15 FV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
||+|.+.|||..||. ++..++||.|+..+-.
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 999999999999995 6889999999987743
No 199
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=70.23 E-value=6 Score=33.34 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEE
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVV 41 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v 41 (234)
++..|.|||||.|...+...+++-|+ -..+|.|+.-.|
T Consensus 117 NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 117 NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 57789999999999999888888774 356777765444
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.55 E-value=8.6 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=19.7
Q ss_pred EEEEcCHHHHHHHHh--cCceeCCcEEE
Q 026724 15 FITFASADSVENLMV--DTHELGGSTVV 40 (234)
Q Consensus 15 FV~F~~~e~A~~Al~--~~~~i~gr~i~ 40 (234)
||.|.+.++|+++.. ++..+..-.+.
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 899999999999994 45555554443
No 201
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.27 E-value=15 Score=22.75 Aligned_cols=19 Identities=37% Similarity=0.850 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCceeEEEee
Q 026724 116 EDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 116 ~~l~~~f~~~G~v~~~~~~ 134 (234)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998766554
No 202
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=67.08 E-value=4.9 Score=37.04 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
.+-+-+|||.|-+..||++|+. ++..+....+++.|..
T Consensus 216 ~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 216 RRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 4567799999999999999995 6778899999998874
No 203
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=65.80 E-value=31 Score=22.85 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhh-cC-ceeEEEeecCCCCcceEEEEEcChHHHHHHH
Q 026724 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKRTGHRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 157 (234)
.-|+--++...+..+|++.++. |+ .|..|..........-|||++...++|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHH
Confidence 3555567899999999999987 55 4666766522223446999999888877764
No 204
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=65.41 E-value=9 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.437 Sum_probs=18.8
Q ss_pred eEEEEEcCHHHHHHHHhc-------CceeCCcEEEEee
Q 026724 13 IGFITFASADSVENLMVD-------THELGGSTVVVDR 43 (234)
Q Consensus 13 ~aFV~F~~~e~A~~Al~~-------~~~i~gr~i~v~~ 43 (234)
-|||-|.++++|++|+.. ...|.+..+.+..
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 689999999999999942 2356666665554
No 205
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.18 E-value=26 Score=30.24 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCce-eEEEeecCCCCcceEEEEEcChHHHHHHHhcCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH 161 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~ 161 (234)
-...|=|-++|.....+||...|+.|+.- -.|.++.+ -.+|..|.+...|..||--.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd----thalaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD----THALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec----ceeEEeecchHHHHHHhhccC
Confidence 34568888999999888999999999753 34566654 479999999999999984333
No 206
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=56.63 E-value=60 Score=22.02 Aligned_cols=65 Identities=9% Similarity=0.229 Sum_probs=39.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhc--------CceeEEEee-------cCCC-Ccc-eEEEEEcChHHHHHHHhcCCccC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRF--------GRILDVYVP-------KRTG-HRG-FGFVTFAEEVVADRVSRRSHEIC 164 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~--------G~v~~~~~~-------~~~~-~~g-~afV~f~~~~~a~~A~~~~~~~~ 164 (234)
..+|| |.++++++++..+.+.+ |+|..+.-. +-.+ .+| |.++.|.-..++.+.+.....++
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~ 86 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLD 86 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCC
Confidence 45666 67788887777665544 466555432 2223 455 57788987777777776544455
Q ss_pred CeEe
Q 026724 165 GQQV 168 (234)
Q Consensus 165 g~~i 168 (234)
...|
T Consensus 87 e~Vl 90 (97)
T CHL00123 87 ENVL 90 (97)
T ss_pred CCeE
Confidence 4433
No 207
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=55.70 E-value=29 Score=23.10 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=32.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEc
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFA 148 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~ 148 (234)
..-+||++++..+-|.-...+.+..+.-.-+.+.......||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 456999999999988777777665444333333333337899998874
No 208
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=54.76 E-value=13 Score=29.61 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=29.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY 132 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 132 (234)
.....+||+-|+|..+|++.|.++.+++|.+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 45678999999999999999999999998765543
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=54.71 E-value=52 Score=20.69 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEE
Q 026724 112 EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAI 170 (234)
Q Consensus 112 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v 170 (234)
.++-++|+..+..|.- ..|...+ .| =||.|.+..+|+++.. ++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999864 4444422 24 3899999999999973 555665555543
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.59 E-value=24 Score=23.59 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcChHHHHHHHhcC-C--ccCCeEeEEE
Q 026724 143 GFVTFAEEVVADRVSRRS-H--EICGQQVAID 171 (234)
Q Consensus 143 afV~f~~~~~a~~A~~~~-~--~~~g~~i~v~ 171 (234)
|.|+|.+...|++.++.. | .+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 689999999999988542 2 5666655554
No 211
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=53.00 E-value=16 Score=28.00 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCe-EeEEEe
Q 026724 101 GKKIFVGRLPQEAT-----AEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQ-QVAIDS 172 (234)
Q Consensus 101 ~~~l~v~nl~~~~~-----~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~-~i~v~~ 172 (234)
...+.+.+++..+- ......+|.+|-+.....+.+ +.++.-|.|.+.+.|..|.. ....|.+. .++.-+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45677888877652 223445666665544444443 34566789999999999964 44577777 788888
Q ss_pred CCCCCC
Q 026724 173 ATPLDD 178 (234)
Q Consensus 173 a~~~~~ 178 (234)
+++...
T Consensus 87 aQ~~~~ 92 (193)
T KOG4019|consen 87 AQPGHP 92 (193)
T ss_pred ccCCCc
Confidence 876543
No 212
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=50.72 E-value=26 Score=28.98 Aligned_cols=75 Identities=11% Similarity=0.237 Sum_probs=55.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCC---------C-CcceEEEEEcChHHHHHH----Hhc----CC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRT---------G-HRGFGFVTFAEEVVADRV----SRR----SH 161 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---------~-~~g~afV~f~~~~~a~~A----~~~----~~ 161 (234)
.++.|.+.|+..+++-..+...|-+||+|++|.+++.+ . ......+.|-+.+.|..- +++ ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999988899999999999999998333 1 345678889888877663 222 23
Q ss_pred ccCCeEeEEEeCC
Q 026724 162 EICGQQVAIDSAT 174 (234)
Q Consensus 162 ~~~g~~i~v~~a~ 174 (234)
.+....|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 6667777777653
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=50.38 E-value=8.4 Score=34.56 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=22.3
Q ss_pred EEEEcCHHHHHHHHh----cCceeCCcEEEEe
Q 026724 15 FITFASADSVENLMV----DTHELGGSTVVVD 42 (234)
Q Consensus 15 FV~F~~~e~A~~Al~----~~~~i~gr~i~v~ 42 (234)
||+|++.+||+.|.+ ...+|.|++|..+
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 899999999999983 4567888876443
No 214
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.48 E-value=83 Score=20.42 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhh-cC-ceeEEEeecCCCCcceEEEEEcChHHHHHHH
Q 026724 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKRTGHRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 157 (234)
.-|+-.++...+..+|++.++. |+ .|..|..+......--|||++...+.|....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 4566678999999999999987 55 4566665522223456999998887777653
No 215
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=44.34 E-value=43 Score=22.88 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=31.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcCh
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEE 150 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~ 150 (234)
..-+||++++..+-+.-...+-+.++.=.-+.+..++...||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45699999998887766655555554422232334334459999887653
No 216
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.35 E-value=35 Score=28.38 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=34.4
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcE-EEEeeccCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGST-VVVDRATPKE 48 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~-i~v~~a~~~~ 48 (234)
|.+..+...-.+=+|.|.+.-+|++||. ++..|++.. |-|+.+..+.
T Consensus 223 Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 223 VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 3456667555689999999999999995 788887654 5566555443
No 217
>COG4371 Predicted membrane protein [Function unknown]
Probab=42.26 E-value=51 Score=26.67 Aligned_cols=6 Identities=33% Similarity=0.534 Sum_probs=2.3
Q ss_pred CCCCCC
Q 026724 109 LPQEAT 114 (234)
Q Consensus 109 l~~~~~ 114 (234)
+|..++
T Consensus 10 ~Pk~~~ 15 (334)
T COG4371 10 SPKRAR 15 (334)
T ss_pred CcHHHH
Confidence 343333
No 218
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.38 E-value=24 Score=19.28 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhhcC
Q 026724 111 QEATAEDLRRYFSRFG 126 (234)
Q Consensus 111 ~~~~~~~l~~~f~~~G 126 (234)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998754
No 219
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=38.20 E-value=24 Score=21.31 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=18.4
Q ss_pred CccceEEEEEcCHHHHHHHH--hc-CceeCCcEEEEeecc
Q 026724 9 AHRGIGFITFASADSVENLM--VD-THELGGSTVVVDRAT 45 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al--~~-~~~i~gr~i~v~~a~ 45 (234)
.++|||||.-.+ ..-+-.| .+ +.-++|-.+.|....
T Consensus 6 ~~~GfGFv~~~~-~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDD-GGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT--TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred EcCCCEEEEECC-CCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 478999999988 1111111 11 335677777776655
No 220
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=36.58 E-value=21 Score=31.49 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.8
Q ss_pred eEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCC
Q 026724 13 IGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (234)
Q Consensus 13 ~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~ 47 (234)
-|.|+|.+..+|-.|- .....|++|.|+|.|..+.
T Consensus 411 ~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 411 HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 5899999999996665 4688999999999998763
No 221
>PRK15464 cold shock-like protein CspH; Provisional
Probab=35.19 E-value=20 Score=22.78 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.1
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999997554
No 222
>PF14893 PNMA: PNMA
Probab=34.41 E-value=51 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-cCceeEEEee-----cCCCCcceEEEEEcCh
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVP-----KRTGHRGFGFVTFAEE 150 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~-----~~~~~~g~afV~f~~~ 150 (234)
.-+.|.|.+||.++++++|++.+.. +-.+-..+|. ++. ...-++|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~-~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE-NAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc-ccceeeeecccc
Confidence 4567999999999999999887754 2222223333 222 344688888653
No 223
>PRK14998 cold shock-like protein CspD; Provisional
Probab=33.89 E-value=25 Score=22.53 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=9.1
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 469999996554
No 224
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=33.54 E-value=26 Score=22.54 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=8.5
Q ss_pred CccceEEEEEc
Q 026724 9 AHRGIGFITFA 19 (234)
Q Consensus 9 ~srG~aFV~F~ 19 (234)
..|||+||+=.
T Consensus 11 ~~KGfGFI~~~ 21 (74)
T PRK09937 11 NAKGFGFICPE 21 (74)
T ss_pred CCCCeEEEeeC
Confidence 46999999654
No 225
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.01 E-value=47 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=20.5
Q ss_pred EEcChHHHHHHHhcCCccCCeEeEEEeCC
Q 026724 146 TFAEEVVADRVSRRSHEICGQQVAIDSAT 174 (234)
Q Consensus 146 ~f~~~~~a~~A~~~~~~~~g~~i~v~~a~ 174 (234)
.|.+.+++..||.......+..+.|....
T Consensus 9 ~F~~~~e~k~av~~yai~~~~~~~v~ksd 37 (67)
T PF03108_consen 9 TFPSKEEFKEAVREYAIKNGFEFKVKKSD 37 (67)
T ss_pred EECCHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 68899999999876555555666655544
No 226
>PRK15463 cold shock-like protein CspF; Provisional
Probab=32.93 E-value=24 Score=22.40 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=9.0
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 458999997654
No 227
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=31.69 E-value=25 Score=22.18 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.0
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 13 ~~kGyGFI~~~~ 24 (69)
T PRK09507 13 ESKGFGFITPED 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999997554
No 228
>PRK10943 cold shock-like protein CspC; Provisional
Probab=31.22 E-value=25 Score=22.16 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=9.1
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999997654
No 229
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.40 E-value=99 Score=20.64 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhc-CceeEEEee-cCCCCcceEEEEEcC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVP-KRTGHRGFGFVTFAE 149 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~-~~~~~~g~afV~f~~ 149 (234)
..-+||++++..+-+.-...+-+.| +. -.+.+. .++...||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 4569999999888766554444442 22 223333 333356898887765
No 230
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=30.40 E-value=83 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=24.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
....|+|||++++-.-|..+++..-.+....++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 456799999999999999988765444343333
No 231
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=29.44 E-value=65 Score=20.10 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCHHHHHHHHhhcCceeEEEeecCCC-CcceEEE
Q 026724 113 ATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFV 145 (234)
Q Consensus 113 ~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV 145 (234)
.-+.+|..+|-+--.|.++.|..... .+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 35667888888888899998883223 5677776
No 232
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=29.32 E-value=34 Score=21.47 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=9.5
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..||||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 468999997665
No 233
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.32 E-value=79 Score=20.71 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=20.2
Q ss_pred CccceEEEEEcCHHHHHHHHhc
Q 026724 9 AHRGIGFITFASADSVENLMVD 30 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~~ 30 (234)
..+||=|||=.+.+++..|+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~g 63 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRG 63 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHhc
Confidence 4799999999999999999975
No 234
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=29.26 E-value=15 Score=30.76 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=28.1
Q ss_pred EEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 14 GFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 14 aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++|+|+..|+|..||. ++..++++.|+..+...+
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 7999999999999996 577888888777666554
No 235
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=29.21 E-value=43 Score=27.77 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEcCHHHHHHHHhcCceeCCcEE
Q 026724 14 GFITFASADSVENLMVDTHELGGSTV 39 (234)
Q Consensus 14 aFV~F~~~e~A~~Al~~~~~i~gr~i 39 (234)
-||+|+..++|.+|+-+ ++||..
T Consensus 332 iFveF~r~e~aiKA~Vd---lnGRyF 354 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVD---LNGRYF 354 (378)
T ss_pred eeeeeccHHHHHHHHHh---cCCcee
Confidence 49999999999999965 677764
No 236
>PRK09890 cold shock protein CspG; Provisional
Probab=28.94 E-value=30 Score=21.91 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=8.9
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK09890 14 ADKGFGFITPDD 25 (70)
T ss_pred CCCCcEEEecCC
Confidence 358999997553
No 237
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=28.93 E-value=2.4e+02 Score=20.83 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=35.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhh-cC-ceeEEEeecCCCCcceEEEEEcChHHHHH
Q 026724 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKRTGHRGFGFVTFAEEVVADR 155 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~ 155 (234)
..|+--++...+..+|++.++. |+ .|..|..+...+..--|||.+....+|..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aid 137 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALD 137 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHH
Confidence 4556668899999999999987 55 35566554221123358999977666544
No 238
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=28.66 E-value=30 Score=21.84 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=8.3
Q ss_pred CccceEEEEEc
Q 026724 9 AHRGIGFITFA 19 (234)
Q Consensus 9 ~srG~aFV~F~ 19 (234)
..|||+||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK10354 14 ADKGFGFITPD 24 (70)
T ss_pred CCCCcEEEecC
Confidence 35899999744
No 239
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.99 E-value=4.2e+02 Score=23.36 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.8
Q ss_pred cceEEEEE
Q 026724 140 RGFGFVTF 147 (234)
Q Consensus 140 ~g~afV~f 147 (234)
.|.+++.+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 45554433
No 240
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.90 E-value=1.3e+02 Score=27.45 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhhc----CceeEEEee
Q 026724 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRF----GRILDVYVP 134 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~v~~~~~~ 134 (234)
...+++|-|-||.|+ +...+|.-+|..| |.|.+|.|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IY 212 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIY 212 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEec
Confidence 556889999999997 5888999988876 588888765
No 241
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.87 E-value=1.3e+02 Score=24.74 Aligned_cols=8 Identities=25% Similarity=0.027 Sum_probs=3.0
Q ss_pred CCCCCCCH
Q 026724 108 RLPQEATA 115 (234)
Q Consensus 108 nl~~~~~~ 115 (234)
+|...+|+
T Consensus 119 GLEg~ltD 126 (271)
T COG1512 119 GLEGVLTD 126 (271)
T ss_pred CcccccCh
Confidence 33333333
No 242
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=23.68 E-value=1.3e+02 Score=27.76 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=30.8
Q ss_pred cceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCC
Q 026724 140 RGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 140 ~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~ 177 (234)
+|-| +.|+++++|.+||.++..-.|..|.|.+.-|+.
T Consensus 448 ~GpA-~VFdsee~a~~ai~~g~I~~gdVvVIRyeGPkG 484 (615)
T PRK12448 448 TGPA-RVFESQDDAVEAILGGKVKAGDVVVIRYEGPKG 484 (615)
T ss_pred EEeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Confidence 4444 569999999999999888889999999987765
No 243
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=23.63 E-value=48 Score=20.27 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=8.8
Q ss_pred ccceEEEEEcC
Q 026724 10 HRGIGFITFAS 20 (234)
Q Consensus 10 srG~aFV~F~~ 20 (234)
.||||||+=.+
T Consensus 11 ~kGfGFI~~~~ 21 (65)
T cd04458 11 EKGFGFITPDD 21 (65)
T ss_pred CCCeEEEecCC
Confidence 48999997665
No 244
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=23.57 E-value=65 Score=19.73 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=9.5
Q ss_pred ccceEEEEEcCH
Q 026724 10 HRGIGFITFASA 21 (234)
Q Consensus 10 srG~aFV~F~~~ 21 (234)
.+|||||+-.+.
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 689999987653
No 245
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.51 E-value=71 Score=25.87 Aligned_cols=31 Identities=35% Similarity=0.599 Sum_probs=24.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHh--hcCceeEE
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFS--RFGRILDV 131 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~--~~G~v~~~ 131 (234)
..-++|+|||+.++..-|..++. .+|.+.-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 46789999999999999999886 45544433
No 246
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=23.41 E-value=1.4e+02 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=31.7
Q ss_pred CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCC
Q 026724 139 HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 139 ~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~ 177 (234)
.+|-| +.|+++++|..|+.++..-.|..|.|.+.-|+.
T Consensus 382 ~~G~A-~VF~see~a~~ai~~g~i~~gdVvViRyeGPkG 419 (535)
T TIGR00110 382 FEGPA-KVFESEEEALEAILGGKIKEGDVVVIRYEGPKG 419 (535)
T ss_pred EEEeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Confidence 45656 459999999999999888889999999987764
No 247
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.35 E-value=1.1e+02 Score=23.42 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=32.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHh-hcCceeEEEee--cCC--CCcceEEEEEcChHHHHHHHh
Q 026724 102 KKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVP--KRT--GHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~--~~~--~~~g~afV~f~~~~~a~~A~~ 158 (234)
.++|.. .|+++|.++.. .-|.+..|..- .+. ..+|-.||+|.+.+.|.+.+.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 445554 44444444332 11677777665 111 267889999999999988763
No 248
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=2.4e+02 Score=20.06 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHhhc-CceeEEEe-e--c---CCC-CcceEEEEEcChHHHHH
Q 026724 112 EATAEDLRRYFSRF-GRILDVYV-P--K---RTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 112 ~~~~~~l~~~f~~~-G~v~~~~~-~--~---~~~-~~g~afV~f~~~~~a~~ 155 (234)
+++.+||++-+++. -.-.++.+ . + ..+ +.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 57889998877653 32223322 2 1 233 7788866 667766554
No 249
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.61 E-value=86 Score=16.99 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHhhcCce
Q 026724 112 EATAEDLRRYFSRFGRI 128 (234)
Q Consensus 112 ~~~~~~l~~~f~~~G~v 128 (234)
.+++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999998864
No 250
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=22.14 E-value=1e+02 Score=28.36 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=25.1
Q ss_pred cceEEEEEcCHHHHHHHHhcCc---ee--CCcEEEEeecc
Q 026724 11 RGIGFITFASADSVENLMVDTH---EL--GGSTVVVDRAT 45 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~~~~---~i--~gr~i~v~~a~ 45 (234)
|-.|||.|.+.++|.+-+..+| +- +.+.|.+.|..
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 4579999999999988775433 22 45667777764
No 251
>COG1278 CspC Cold shock proteins [Transcription]
Probab=22.03 E-value=39 Score=21.34 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=19.9
Q ss_pred CccceEEEEEcCH-HHHH---HHHh-cC-c-eeCCcEEEEeecc
Q 026724 9 AHRGIGFITFASA-DSVE---NLMV-DT-H-ELGGSTVVVDRAT 45 (234)
Q Consensus 9 ~srG~aFV~F~~~-e~A~---~Al~-~~-~-~i~gr~i~v~~a~ 45 (234)
..|||+||+=++- +|+- .||+ ++ . ...|++|......
T Consensus 11 ~~KGfGFI~p~~G~~DvFVH~Sai~~~g~~~L~eGQ~V~f~~~~ 54 (67)
T COG1278 11 ATKGFGFITPEDGGKDVFVHISAIQRAGFRTLREGQKVEFEVEQ 54 (67)
T ss_pred CCCcceEcCCCCCCcCEEEEeeeeccCCCcccCCCCEEEEEEec
Confidence 5789999876555 2321 2332 22 2 3456766665543
No 252
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.89 E-value=30 Score=21.84 Aligned_cols=26 Identities=12% Similarity=0.485 Sum_probs=18.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFS 123 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~ 123 (234)
...++++|||.+|..+-++.=..++.
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHH
Confidence 45789999999999886655444443
No 253
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=21.84 E-value=1.6e+02 Score=27.03 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=31.1
Q ss_pred CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCC
Q 026724 139 HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 139 ~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~ 177 (234)
.+|-| +.|+++++|.+||.++..-.|..|.|.+.-|+.
T Consensus 397 ~~GpA-~VF~see~a~~ai~~g~I~~gdVvViRyeGPkG 434 (552)
T PRK00911 397 FTGPA-RVFDSEEEAMEAILAGKIKAGDVVVIRYEGPKG 434 (552)
T ss_pred eeeeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Confidence 34555 569999999999999888888899998887764
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.35 E-value=19 Score=32.44 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=41.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC--CC-CcceEEEEEc---ChHHHHHHH
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--TG-HRGFGFVTFA---EEVVADRVS 157 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~--~~-~~g~afV~f~---~~~~a~~A~ 157 (234)
..+.|||.|++++++-.+|..+++.+--+..+.+... .. ...+.+|+|. +...|.-||
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aL 293 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWAL 293 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHh
Confidence 4578999999999999999999998866655544311 11 4456788887 445555554
No 255
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=21.14 E-value=1.7e+02 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=30.8
Q ss_pred CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCC
Q 026724 139 HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 139 ~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~ 177 (234)
..|-| +.|++.++|.+|++.+..-.|..+.|.+.-|+.
T Consensus 414 ~eGpA-~VFds~e~~~~ai~~g~l~~g~VvVIRyeGPkG 451 (575)
T COG0129 414 FEGPA-RVFDSQEDAIKAILDGELKAGDVVVIRYEGPKG 451 (575)
T ss_pred EEeee-EEECCHHHHHHHHhcCCCCCCeEEEEeccCCCC
Confidence 34444 569999999999998887778889999988775
No 256
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=21.06 E-value=1.6e+02 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=24.7
Q ss_pred ceEEEEEcCHHHHHHHHhc----CceeCCcEEEEeeccCC
Q 026724 12 GIGFITFASADSVENLMVD----THELGGSTVVVDRATPK 47 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al~~----~~~i~gr~i~v~~a~~~ 47 (234)
+=..|.|.+.++|.+|... ...+.|..++|.++...
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3467999999999999954 55899999999988443
No 257
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.00 E-value=1.8e+02 Score=16.93 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=21.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCce
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v 128 (234)
..++|.+.....+.++|.+++..+|--
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 357777776688999999999998863
No 258
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=19 Score=31.52 Aligned_cols=72 Identities=7% Similarity=-0.141 Sum_probs=51.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC--CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG--HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~--~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
.+.|+..||..++++++.-+|+.||.|.-+.+. ...+ .+-.+||+-.+ +++..+| +....+.+..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999887776 2222 55677887654 3455555 34556677777776654
No 259
>PHA01632 hypothetical protein
Probab=20.10 E-value=1.2e+02 Score=18.27 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=15.4
Q ss_pred EeCCCCCCCHHHHHHHHhh
Q 026724 106 VGRLPQEATAEDLRRYFSR 124 (234)
Q Consensus 106 v~nl~~~~~~~~l~~~f~~ 124 (234)
|..+|..-|+++|+..+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4578999999999987754
Done!