Query 026724
Match_columns 234
No_of_seqs 382 out of 2208
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 4.4E-30 1.5E-34 199.0 14.9 139 1-181 45-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 6.4E-30 2.2E-34 193.2 9.0 129 1-177 35-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 4.3E-29 1.5E-33 196.4 11.9 132 1-178 47-183 (213)
4 1fje_B Nucleolin RBD12, protei 100.0 3.9E-28 1.3E-32 184.9 13.3 128 1-177 44-175 (175)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.9E-27 9.9E-32 178.6 15.4 125 1-173 35-168 (168)
6 3md3_A Nuclear and cytoplasmic 99.9 6E-27 2.1E-31 176.3 15.8 127 2-175 33-166 (166)
7 2qfj_A FBP-interacting repress 99.9 4.1E-27 1.4E-31 184.9 14.9 143 1-180 60-209 (216)
8 2yh0_A Splicing factor U2AF 65 99.9 1E-26 3.6E-31 180.2 16.2 148 4-179 44-197 (198)
9 1fxl_A Paraneoplastic encephal 99.9 6.9E-27 2.4E-31 176.2 14.4 125 1-173 34-167 (167)
10 2g4b_A Splicing factor U2AF 65 99.9 1.2E-26 4.1E-31 176.0 12.7 122 5-174 45-172 (172)
11 3smz_A Protein raver-1, ribonu 99.9 7E-26 2.4E-30 185.3 14.6 134 1-179 127-267 (284)
12 2kn4_A Immunoglobulin G-bindin 99.9 1.3E-25 4.4E-30 168.5 14.0 83 98-180 67-154 (158)
13 2ghp_A U4/U6 snRNA-associated 99.9 2.5E-25 8.7E-30 182.7 15.5 135 1-177 150-292 (292)
14 3nmr_A Cugbp ELAV-like family 99.9 1.5E-25 5E-30 170.3 12.6 127 1-174 35-175 (175)
15 3tyt_A Heterogeneous nuclear r 99.9 8E-25 2.7E-29 170.9 11.9 152 10-173 41-204 (205)
16 3pgw_A U1-A; protein-RNA compl 99.9 1.7E-23 5.7E-28 171.0 19.7 75 98-174 204-281 (282)
17 2adc_A Polypyrimidine tract-bi 99.9 1.3E-23 4.5E-28 166.8 16.7 150 11-176 72-228 (229)
18 2i2y_A Fusion protein consists 99.9 7.7E-24 2.6E-28 157.4 12.9 136 7-177 9-149 (150)
19 1qm9_A Polypyrimidine tract-bi 99.9 1.2E-23 3.9E-28 163.3 14.5 150 11-176 41-197 (198)
20 3smz_A Protein raver-1, ribonu 99.9 1.1E-22 3.7E-27 166.3 15.2 117 8-178 54-177 (284)
21 2ghp_A U4/U6 snRNA-associated 99.9 8.1E-23 2.8E-27 167.7 13.9 121 2-179 74-200 (292)
22 3sde_A Paraspeckle component 1 99.9 9.5E-23 3.3E-27 164.9 13.5 118 8-179 55-182 (261)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-21 8E-26 133.8 10.3 78 98-175 16-98 (99)
24 1h2v_Z 20 kDa nuclear CAP bind 99.9 4E-21 1.4E-25 143.6 12.0 83 98-180 36-123 (156)
25 2dgs_A DAZ-associated protein 99.9 2.1E-20 7E-25 129.1 13.5 84 98-181 7-94 (99)
26 2cqg_A TDP-43, TAR DNA-binding 99.8 3.2E-20 1.1E-24 129.0 13.1 83 98-180 12-97 (103)
27 2dnm_A SRP46 splicing factor; 99.8 3.7E-20 1.2E-24 128.7 12.1 85 97-181 9-98 (103)
28 1whw_A Hypothetical protein ri 99.8 6E-20 2.1E-24 126.7 12.9 84 98-181 5-93 (99)
29 2lxi_A RNA-binding protein 10; 99.8 8.3E-21 2.8E-25 129.1 8.4 79 101-179 1-86 (91)
30 4f25_A Polyadenylate-binding p 99.8 1.9E-20 6.4E-25 132.9 10.5 81 100-180 4-87 (115)
31 3pgw_S U1-70K; protein-RNA com 99.8 9.8E-21 3.3E-25 163.2 10.6 82 99-180 100-186 (437)
32 2dnz_A Probable RNA-binding pr 99.8 7.1E-20 2.4E-24 125.3 12.9 82 99-180 3-89 (95)
33 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-19 4.6E-24 125.9 14.3 84 98-181 12-98 (103)
34 2d9p_A Polyadenylate-binding p 99.8 6.6E-20 2.3E-24 127.4 12.2 84 98-181 12-98 (103)
35 2cq3_A RNA-binding protein 9; 99.8 1.9E-19 6.5E-24 125.1 14.5 84 98-181 12-98 (103)
36 1x5u_A Splicing factor 3B subu 99.8 1.1E-19 3.7E-24 126.8 13.2 84 98-181 12-100 (105)
37 2cph_A RNA binding motif prote 99.8 1.4E-19 4.9E-24 126.5 13.4 84 98-181 12-102 (107)
38 2cq0_A Eukaryotic translation 99.8 6.6E-20 2.3E-24 127.4 11.5 84 98-181 12-100 (103)
39 1sjq_A Polypyrimidine tract-bi 99.8 4.3E-20 1.5E-24 127.8 10.4 80 98-180 13-96 (105)
40 1x4a_A Splicing factor, argini 99.8 2E-19 6.7E-24 126.3 14.0 83 98-180 19-103 (109)
41 2cqd_A RNA-binding region cont 99.8 3.8E-19 1.3E-23 126.2 15.4 82 98-179 14-99 (116)
42 1wi8_A EIF-4B, eukaryotic tran 99.8 1.4E-19 4.8E-24 126.0 12.9 82 98-180 12-98 (104)
43 1x5s_A Cold-inducible RNA-bind 99.8 8.2E-20 2.8E-24 126.7 11.5 84 98-181 9-97 (102)
44 1x5t_A Splicing factor 3B subu 99.8 7.5E-20 2.6E-24 125.4 11.0 83 99-181 3-91 (96)
45 3s8s_A Histone-lysine N-methyl 99.8 7.1E-20 2.4E-24 128.7 11.0 80 99-178 4-88 (110)
46 2lea_A Serine/arginine-rich sp 99.8 2.8E-20 9.4E-25 135.7 9.2 83 98-180 44-131 (135)
47 1u6f_A Tcubp1, RNA-binding pro 99.8 3.1E-19 1E-23 130.8 14.8 83 98-180 39-126 (139)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.6E-20 2.9E-24 126.6 11.2 84 98-181 9-97 (102)
49 2dgo_A Cytotoxic granule-assoc 99.8 4.1E-19 1.4E-23 125.9 14.7 84 98-181 12-100 (115)
50 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-19 5E-24 128.2 12.3 84 98-181 22-110 (115)
51 2dng_A Eukaryotic translation 99.8 2E-19 6.9E-24 125.0 12.8 82 98-180 12-97 (103)
52 1x4h_A RNA-binding protein 28; 99.8 2.8E-19 9.4E-24 125.9 13.4 84 98-181 12-106 (111)
53 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-19 7.6E-24 125.2 12.8 84 98-181 12-102 (105)
54 2fy1_A RNA-binding motif prote 99.8 2.4E-19 8.4E-24 127.3 13.2 82 98-179 4-89 (116)
55 2dgv_A HnRNP M, heterogeneous 99.8 9.8E-20 3.4E-24 123.9 10.5 82 98-179 5-89 (92)
56 2do4_A Squamous cell carcinoma 99.8 2.3E-19 7.7E-24 124.0 12.5 82 98-179 14-99 (100)
57 2dh8_A DAZ-associated protein 99.8 6.7E-20 2.3E-24 127.8 9.9 84 98-181 13-100 (105)
58 3q2s_C Cleavage and polyadenyl 99.8 9.8E-21 3.3E-25 150.0 6.1 77 100-176 67-150 (229)
59 2lkz_A RNA-binding protein 5; 99.8 6.6E-20 2.3E-24 125.3 9.4 78 98-175 6-94 (95)
60 2cpf_A RNA binding motif prote 99.8 1.5E-19 5.1E-24 124.4 11.2 83 99-181 3-93 (98)
61 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-19 7.6E-24 125.4 12.1 83 98-180 10-100 (106)
62 2dgu_A Heterogeneous nuclear r 99.8 6.3E-19 2.2E-23 122.5 14.1 79 98-181 8-88 (103)
63 2cq1_A PTB-like protein L; RRM 99.8 5.1E-19 1.7E-23 122.2 13.2 80 98-180 12-95 (101)
64 3r27_A HnRNP L, heterogeneous 99.8 2.7E-19 9.3E-24 122.6 11.5 77 98-177 18-98 (100)
65 1x4d_A Matrin 3; structural ge 99.8 2E-19 6.7E-24 124.3 10.9 80 98-180 12-96 (102)
66 1x4c_A Splicing factor, argini 99.8 9.5E-19 3.3E-23 122.6 14.3 78 98-179 12-96 (108)
67 3md1_A Nuclear and cytoplasmic 99.8 2.3E-19 7.8E-24 119.6 10.5 76 102-177 2-82 (83)
68 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-19 5.8E-24 121.4 9.7 78 99-176 4-86 (87)
69 2cpe_A RNA-binding protein EWS 99.8 4.8E-19 1.7E-23 125.1 12.4 83 98-180 12-107 (113)
70 1x4b_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 126.8 11.3 83 99-181 25-111 (116)
71 1wg5_A Heterogeneous nuclear r 99.8 6.3E-19 2.1E-23 122.7 12.4 82 98-179 12-97 (104)
72 2e5h_A Zinc finger CCHC-type a 99.8 5E-19 1.7E-23 120.8 11.7 77 98-174 13-94 (94)
73 2dhg_A TRNA selenocysteine ass 99.8 3.5E-19 1.2E-23 123.9 11.1 84 98-181 6-95 (104)
74 3ex7_B RNA-binding protein 8A; 99.8 2E-19 6.9E-24 129.5 10.1 82 98-179 19-105 (126)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.8E-19 6.1E-24 135.9 10.1 83 98-180 69-156 (165)
76 2do0_A HnRNP M, heterogeneous 99.8 2E-18 6.7E-23 122.1 14.9 83 98-180 12-98 (114)
77 2dgt_A RNA-binding protein 30; 99.8 8.1E-19 2.8E-23 119.4 12.4 79 98-181 7-87 (92)
78 3s7r_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 119.7 10.5 76 98-173 8-87 (87)
79 2dnq_A RNA-binding protein 4B; 99.8 7.9E-19 2.7E-23 118.9 12.0 78 98-180 5-84 (90)
80 2dgx_A KIAA0430 protein; RRM d 99.8 7.5E-19 2.6E-23 120.5 12.0 82 98-179 6-93 (96)
81 1wex_A Hypothetical protein (r 99.8 1.7E-18 5.8E-23 120.3 13.9 80 98-180 12-95 (104)
82 2x1f_A MRNA 3'-END-processing 99.8 5.2E-19 1.8E-23 121.3 11.0 78 101-178 2-84 (96)
83 1wez_A HnRNP H', FTP-3, hetero 99.8 3E-19 1E-23 123.9 9.8 79 98-177 12-93 (102)
84 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.9E-19 2E-23 118.2 10.9 77 98-174 4-85 (85)
85 1p27_B RNA-binding protein 8A; 99.8 2.9E-19 9.8E-24 124.8 9.7 81 98-178 20-105 (106)
86 2err_A Ataxin-2-binding protei 99.8 4E-19 1.4E-23 124.8 10.3 79 98-176 26-107 (109)
87 1oo0_B CG8781-PA, drosophila Y 99.8 3.8E-19 1.3E-23 125.0 10.2 82 98-179 23-109 (110)
88 2rs2_A Musashi-1, RNA-binding 99.8 7.4E-19 2.5E-23 123.4 11.2 82 98-179 22-107 (109)
89 2jrs_A RNA-binding protein 39; 99.8 9.4E-19 3.2E-23 122.6 11.7 80 98-177 23-107 (108)
90 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.8E-23 117.8 11.4 77 101-177 6-86 (89)
91 2kxn_B Transformer-2 protein h 99.8 5.2E-19 1.8E-23 127.9 10.3 81 98-178 43-128 (129)
92 2ad9_A Polypyrimidine tract-bi 99.8 9.3E-19 3.2E-23 124.0 11.3 80 98-180 28-111 (119)
93 2dgw_A Probable RNA-binding pr 99.8 9.8E-19 3.4E-23 118.7 11.0 80 98-178 7-89 (91)
94 3p5t_L Cleavage and polyadenyl 99.8 9.8E-20 3.3E-24 123.5 6.0 79 102-180 2-87 (90)
95 2cqc_A Arginine/serine-rich sp 99.8 8.1E-19 2.8E-23 120.0 10.7 78 98-175 12-94 (95)
96 1wf0_A TDP-43, TAR DNA-binding 99.8 4.1E-19 1.4E-23 119.8 9.0 80 99-180 3-82 (88)
97 1s79_A Lupus LA protein; RRM, 99.8 3.6E-19 1.2E-23 123.6 8.9 78 98-175 8-88 (103)
98 3d2w_A TAR DNA-binding protein 99.8 6.3E-19 2.1E-23 119.2 9.8 79 98-178 8-86 (89)
99 1why_A Hypothetical protein ri 99.8 2.1E-18 7E-23 118.5 12.4 78 98-178 14-95 (97)
100 4a8x_A RNA-binding protein wit 99.8 8.3E-19 2.8E-23 118.2 10.2 79 100-178 3-87 (88)
101 1x4f_A Matrin 3; structural ge 99.8 1.1E-18 3.7E-23 122.4 10.8 80 98-180 22-106 (112)
102 2cpj_A Non-POU domain-containi 99.8 2.2E-18 7.6E-23 118.8 12.2 80 98-180 12-93 (99)
103 2div_A TRNA selenocysteine ass 99.8 7.6E-19 2.6E-23 121.1 9.8 81 98-178 6-96 (99)
104 2hgn_A Heterogeneous nuclear r 99.8 1E-19 3.4E-24 132.9 5.5 80 98-178 43-125 (139)
105 2cpd_A Apobec-1 stimulating pr 99.8 5E-18 1.7E-22 117.0 13.9 78 98-180 12-93 (99)
106 2ywk_A Putative RNA-binding pr 99.8 8.6E-19 2.9E-23 119.9 9.8 78 98-175 13-94 (95)
107 2fc9_A NCL protein; structure 99.8 2.2E-18 7.6E-23 119.2 11.9 80 98-180 12-95 (101)
108 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-18 4.3E-23 115.4 9.9 72 100-174 6-79 (89)
109 2m2b_A RNA-binding protein 10; 99.8 8.4E-19 2.9E-23 127.2 9.9 82 98-180 20-112 (131)
110 2dnp_A RNA-binding protein 14; 99.8 3.1E-18 1.1E-22 115.9 12.1 78 98-180 6-85 (90)
111 2la6_A RNA-binding protein FUS 99.8 1.7E-18 5.8E-23 119.4 10.7 77 98-174 10-99 (99)
112 2nlw_A Eukaryotic translation 99.8 1.8E-18 6.3E-23 120.5 10.8 81 98-178 12-102 (105)
113 1x4g_A Nucleolysin TIAR; struc 99.8 3.5E-18 1.2E-22 119.9 12.2 81 98-181 22-104 (109)
114 2dis_A Unnamed protein product 99.8 4.9E-18 1.7E-22 119.1 12.9 83 98-180 5-96 (109)
115 2mss_A Protein (musashi1); RNA 99.8 6.3E-19 2.1E-23 115.2 7.6 71 103-173 1-75 (75)
116 2cqh_A IGF-II mRNA-binding pro 99.8 1.4E-18 4.6E-23 118.5 9.5 79 98-180 5-87 (93)
117 2cpi_A CCR4-NOT transcription 99.8 2.1E-18 7.1E-23 121.5 10.5 81 98-178 12-103 (111)
118 3ns6_A Eukaryotic translation 99.8 3.2E-19 1.1E-23 123.3 6.2 78 100-177 5-94 (100)
119 2khc_A Testis-specific RNP-typ 99.8 2.9E-18 1E-22 122.0 11.3 77 98-174 37-118 (118)
120 1wf1_A RNA-binding protein RAL 99.8 1.9E-18 6.5E-23 121.5 10.1 77 98-179 24-103 (110)
121 2hvz_A Splicing factor, argini 99.8 3.7E-18 1.3E-22 118.1 11.5 76 102-179 1-78 (101)
122 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-18 4.5E-23 122.1 9.2 79 98-177 25-106 (111)
123 2jwn_A Embryonic polyadenylate 99.8 2.8E-18 9.6E-23 123.1 11.1 80 100-179 35-118 (124)
124 2cpy_A RNA-binding protein 12; 99.8 1.1E-18 3.7E-23 123.5 8.7 80 98-177 12-95 (114)
125 2fc8_A NCL protein; structure 99.8 3.3E-18 1.1E-22 118.5 10.8 80 98-180 12-96 (102)
126 2cq4_A RNA binding motif prote 99.8 3.6E-19 1.2E-23 126.0 6.0 81 99-179 23-107 (114)
127 2cqp_A RNA-binding protein 12; 99.8 1.4E-18 4.8E-23 119.5 8.7 80 98-177 12-96 (98)
128 2a3j_A U1 small nuclear ribonu 99.8 3.5E-18 1.2E-22 122.9 11.1 80 98-178 26-112 (127)
129 3ulh_A THO complex subunit 4; 99.8 2.9E-18 9.9E-23 119.9 10.4 77 98-174 26-106 (107)
130 2cpx_A Hypothetical protein FL 99.8 7.7E-18 2.6E-22 119.2 12.4 82 98-181 22-110 (115)
131 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.2E-19 3.2E-23 121.0 7.1 79 98-177 16-99 (100)
132 3n9u_C Cleavage and polyadenyl 99.8 1.7E-18 5.7E-23 129.2 8.9 77 100-176 54-137 (156)
133 2dnn_A RNA-binding protein 12; 99.8 1.5E-18 5E-23 121.6 8.0 78 99-177 14-94 (109)
134 2ytc_A PRE-mRNA-splicing facto 99.8 6.2E-18 2.1E-22 113.2 10.7 74 98-174 9-85 (85)
135 1p1t_A Cleavage stimulation fa 99.8 8.8E-19 3E-23 121.8 6.7 81 99-179 6-91 (104)
136 1iqt_A AUF1, heterogeneous nuc 99.8 1E-18 3.6E-23 114.1 6.4 71 103-173 1-75 (75)
137 2kvi_A Nuclear polyadenylated 99.8 1.7E-18 5.7E-23 118.8 7.6 78 98-180 7-87 (96)
138 2jvo_A Nucleolar protein 3; nu 99.8 4.6E-18 1.6E-22 119.1 10.0 77 98-179 28-106 (108)
139 2kt5_A RNA and export factor-b 99.8 1.9E-17 6.3E-22 118.9 13.3 83 98-180 32-118 (124)
140 2krb_A Eukaryotic translation 99.8 1.8E-18 6.2E-23 114.8 7.3 70 101-170 1-80 (81)
141 2e5g_A U6 snRNA-specific termi 99.8 1.8E-17 6.3E-22 113.1 12.1 81 98-180 5-86 (94)
142 2ek1_A RNA-binding protein 12; 99.7 1.6E-18 5.4E-23 118.5 6.7 78 98-175 12-94 (95)
143 2xnq_A Nuclear polyadenylated 99.7 1.5E-17 5E-22 114.2 11.6 75 98-177 19-96 (97)
144 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-17 3.8E-22 114.8 10.9 79 98-178 16-96 (97)
145 1x4e_A RNA binding motif, sing 99.7 1.5E-18 5.2E-23 116.2 6.2 76 99-174 3-83 (85)
146 2la4_A Nuclear and cytoplasmic 99.7 4.9E-18 1.7E-22 117.5 9.0 76 98-176 24-101 (101)
147 1x5p_A Negative elongation fac 99.7 4.5E-17 1.5E-21 111.7 13.5 79 98-181 12-92 (97)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2E-18 7E-23 113.3 6.4 73 102-174 1-77 (77)
149 2db1_A Heterogeneous nuclear r 99.7 2.3E-18 7.8E-23 122.6 7.1 80 98-177 14-99 (118)
150 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-17 7.5E-22 120.8 12.5 76 98-173 60-140 (140)
151 2hgl_A HNRPF protein, heteroge 99.7 1.7E-18 5.8E-23 126.0 6.4 80 98-177 41-126 (136)
152 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-17 3.7E-22 118.5 10.4 80 98-177 5-86 (115)
153 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-18 4.2E-23 120.5 5.4 81 98-179 14-98 (101)
154 2xs2_A Deleted in azoospermia- 99.7 1.6E-18 5.5E-23 120.1 5.9 82 98-179 6-89 (102)
155 1wel_A RNA-binding protein 12; 99.7 1.4E-18 4.8E-23 124.8 5.7 80 98-177 22-105 (124)
156 2lcw_A RNA-binding protein FUS 99.6 1.2E-19 3.9E-24 129.0 0.0 82 98-179 4-98 (116)
157 1nu4_A U1A RNA binding domain; 99.7 4.9E-18 1.7E-22 116.5 8.2 80 98-178 5-91 (97)
158 1x5o_A RNA binding motif, sing 99.7 2.6E-17 8.7E-22 116.3 12.0 79 98-176 22-112 (114)
159 2cq2_A Hypothetical protein LO 99.7 1.4E-17 4.8E-22 116.8 10.0 81 98-181 22-111 (114)
160 2hgm_A HNRPF protein, heteroge 99.7 3.6E-18 1.2E-22 122.4 7.0 78 98-176 39-121 (126)
161 1fjc_A Nucleolin RBD2, protein 99.7 6.2E-18 2.1E-22 115.8 7.8 79 98-179 13-94 (96)
162 3beg_B Splicing factor, argini 99.7 1.1E-17 3.9E-22 118.4 9.1 75 99-177 14-95 (115)
163 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-18 6.3E-23 123.6 4.7 79 99-177 21-106 (123)
164 2ki2_A SS-DNA binding protein 99.7 2E-18 6.8E-23 116.9 4.7 77 102-179 2-83 (90)
165 1whx_A Hypothetical protein ri 99.7 7.8E-18 2.7E-22 118.5 7.4 75 100-177 9-85 (111)
166 2lmi_A GRSF-1, G-rich sequence 99.7 4E-18 1.4E-22 119.2 5.9 80 98-177 8-93 (107)
167 2dnl_A Cytoplasmic polyadenyla 99.7 1.7E-17 5.7E-22 117.4 8.9 78 98-176 5-88 (114)
168 2e44_A Insulin-like growth fac 99.7 8E-17 2.7E-21 110.2 10.5 79 98-177 12-93 (96)
169 1sjr_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 120.9 10.0 78 99-177 44-125 (164)
170 3zzy_A Polypyrimidine tract-bi 99.7 8.2E-17 2.8E-21 115.4 10.1 76 100-177 27-107 (130)
171 3egn_A RNA-binding protein 40; 99.7 2.6E-17 8.8E-22 121.1 7.2 82 98-180 42-134 (143)
172 2f3j_A RNA and export factor b 99.7 8.1E-17 2.8E-21 122.5 10.0 80 98-177 85-168 (177)
173 2e5i_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 111.5 12.5 73 102-177 26-103 (124)
174 2diu_A KIAA0430 protein; struc 99.7 1.8E-16 6.3E-21 105.9 9.9 74 99-179 6-87 (96)
175 4f02_A Polyadenylate-binding p 99.7 1.5E-16 5.2E-21 124.6 10.9 80 98-177 12-96 (213)
176 1l3k_A Heterogeneous nuclear r 99.7 1.6E-16 5.6E-21 122.3 10.1 82 98-179 10-95 (196)
177 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.3E-21 107.5 8.1 74 100-177 4-79 (88)
178 2cjk_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 120.2 8.5 78 100-177 2-82 (167)
179 1b7f_A Protein (SXL-lethal pro 99.7 4.3E-16 1.5E-20 117.0 11.4 80 100-179 2-86 (168)
180 2hzc_A Splicing factor U2AF 65 99.7 2.8E-16 9.6E-21 105.4 9.0 71 99-172 4-86 (87)
181 3tyt_A Heterogeneous nuclear r 99.7 4.1E-16 1.4E-20 121.4 11.2 76 100-177 3-81 (205)
182 1fxl_A Paraneoplastic encephal 99.7 5.3E-16 1.8E-20 116.2 10.9 78 101-178 2-84 (167)
183 2j8a_A Histone-lysine N-methyl 99.7 1.7E-16 5.7E-21 112.2 7.1 73 102-174 3-94 (136)
184 2bz2_A Negative elongation fac 99.6 6.6E-16 2.2E-20 110.2 9.6 78 98-180 36-115 (121)
185 2voo_A Lupus LA protein; RNA-b 99.6 9.4E-16 3.2E-20 118.2 10.3 77 100-176 108-187 (193)
186 3md3_A Nuclear and cytoplasmic 99.6 1.5E-15 5.2E-20 113.6 10.7 77 102-178 1-81 (166)
187 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.2E-14 4E-19 99.9 13.2 78 101-180 10-94 (100)
188 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-15 5.3E-20 120.0 8.5 78 98-178 131-231 (240)
189 3pgw_A U1-A; protein-RNA compl 99.6 4.7E-15 1.6E-19 120.8 11.4 79 98-177 6-91 (282)
190 2qfj_A FBP-interacting repress 99.6 4.4E-15 1.5E-19 116.0 10.5 78 100-177 27-109 (216)
191 2dit_A HIV TAT specific factor 99.6 1.6E-14 5.5E-19 101.6 12.3 82 98-180 12-106 (112)
192 2pe8_A Splicing factor 45; RRM 99.6 1.2E-14 4E-19 101.0 10.2 78 98-175 5-93 (105)
193 2adc_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 115.4 11.1 78 98-177 31-111 (229)
194 1fje_B Nucleolin RBD12, protei 99.6 2.6E-15 9E-20 113.6 6.0 82 98-179 10-94 (175)
195 1qm9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 111.2 9.2 76 100-177 2-80 (198)
196 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.2E-18 114.6 10.6 75 98-175 19-95 (261)
197 3nmr_A Cugbp ELAV-like family 99.5 2.9E-14 1E-18 107.5 9.0 79 100-178 2-90 (175)
198 2g4b_A Splicing factor U2AF 65 99.5 5.6E-14 1.9E-18 105.8 10.4 76 100-178 3-90 (172)
199 2yh0_A Splicing factor U2AF 65 99.5 8.6E-14 3E-18 107.1 10.9 76 100-178 3-90 (198)
200 4f25_A Polyadenylate-binding p 99.5 2E-14 6.8E-19 101.6 3.9 74 2-117 38-113 (115)
201 3v4m_A Splicing factor U2AF 65 99.4 3.5E-13 1.2E-17 93.5 8.6 77 99-175 3-96 (105)
202 1jmt_A Splicing factor U2AF 35 99.4 5E-14 1.7E-18 97.7 3.6 68 106-173 20-103 (104)
203 3tht_A Alkylated DNA repair pr 99.4 5.4E-13 1.8E-17 110.8 9.4 74 98-174 15-97 (345)
204 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.6E-17 92.3 8.8 76 100-175 19-108 (118)
205 3s6e_A RNA-binding protein 39; 99.3 9.6E-12 3.3E-16 87.3 9.8 77 98-175 4-92 (114)
206 2lxi_A RNA-binding protein 10; 99.3 2.8E-12 9.4E-17 86.6 6.5 49 1-49 34-85 (91)
207 2lkz_A RNA-binding protein 5; 99.3 4.4E-12 1.5E-16 86.3 5.4 46 1-46 43-94 (95)
208 4fxv_A ELAV-like protein 1; RN 99.3 4.4E-12 1.5E-16 87.0 4.5 46 1-46 51-98 (99)
209 2cqg_A TDP-43, TAR DNA-binding 99.2 2.3E-11 7.9E-16 83.9 6.1 51 1-51 47-97 (103)
210 1owx_A Lupus LA protein, SS-B, 99.2 1.3E-10 4.6E-15 81.8 9.9 74 98-174 15-94 (121)
211 2dnr_A Synaptojanin-1; RRM dom 99.2 1.4E-10 4.8E-15 76.8 8.7 75 99-178 5-88 (91)
212 3s8s_A Histone-lysine N-methyl 99.2 1.9E-11 6.6E-16 85.4 4.8 47 1-47 38-86 (110)
213 3p5t_L Cleavage and polyadenyl 99.2 8.5E-12 2.9E-16 83.9 2.3 49 1-49 35-85 (90)
214 3ns6_A Eukaryotic translation 99.1 1.7E-11 5.7E-16 84.2 3.2 48 1-48 44-94 (100)
215 2dgs_A DAZ-associated protein 99.1 8.2E-11 2.8E-15 80.5 6.5 50 1-50 42-92 (99)
216 1whw_A Hypothetical protein ri 99.1 1.4E-10 4.9E-15 79.2 7.5 50 1-50 40-91 (99)
217 1x5t_A Splicing factor 3B subu 99.1 8.9E-11 3E-15 79.7 6.4 50 1-50 38-89 (96)
218 3md1_A Nuclear and cytoplasmic 99.1 6E-11 2E-15 78.3 5.1 48 1-48 33-82 (83)
219 2fc8_A NCL protein; structure 99.1 6.2E-11 2.1E-15 81.5 5.3 50 1-50 44-95 (102)
220 2cqb_A Peptidyl-prolyl CIS-tra 99.1 1.2E-10 4.2E-15 79.9 6.7 50 1-50 44-95 (102)
221 2dng_A Eukaryotic translation 99.1 8E-11 2.7E-15 81.1 5.6 50 1-50 46-96 (103)
222 1x4h_A RNA-binding protein 28; 99.1 1.8E-10 6.2E-15 80.3 7.4 51 1-51 47-105 (111)
223 1wi8_A EIF-4B, eukaryotic tran 99.1 1.7E-10 5.7E-15 79.6 6.9 51 1-51 46-98 (104)
224 2mss_A Protein (musashi1); RNA 99.1 6.8E-11 2.3E-15 76.5 4.5 44 1-44 31-75 (75)
225 2cpe_A RNA-binding protein EWS 99.1 1.7E-10 5.9E-15 80.8 6.8 50 1-50 55-106 (113)
226 2rs2_A Musashi-1, RNA-binding 99.1 1.5E-10 5.1E-15 80.7 6.4 50 1-50 57-107 (109)
227 3bs9_A Nucleolysin TIA-1 isofo 99.1 7.7E-11 2.6E-15 78.5 4.5 47 1-47 38-86 (87)
228 2x1f_A MRNA 3'-END-processing 99.1 1.8E-10 6.2E-15 78.3 6.4 49 1-49 34-84 (96)
229 2dnz_A Probable RNA-binding pr 99.1 1.4E-10 4.8E-15 78.6 5.5 50 1-50 37-88 (95)
230 1x4b_A Heterogeneous nuclear r 99.1 1.7E-10 5.9E-15 81.2 6.1 51 1-51 59-110 (116)
231 1x5u_A Splicing factor 3B subu 99.1 2.1E-10 7.2E-15 79.2 6.3 50 1-50 47-98 (105)
232 2cq0_A Eukaryotic translation 99.1 1.6E-10 5.4E-15 79.6 5.5 50 1-50 47-98 (103)
233 2dnm_A SRP46 splicing factor; 99.1 1.5E-10 5E-15 79.8 5.1 50 1-50 45-96 (103)
234 2hvz_A Splicing factor, argini 99.1 1E-10 3.5E-15 80.3 4.2 40 10-49 36-77 (101)
235 2dgo_A Cytotoxic granule-assoc 99.1 3.7E-10 1.3E-14 79.3 7.0 51 1-51 47-99 (115)
236 1x5s_A Cold-inducible RNA-bind 99.1 1.7E-10 5.9E-15 79.2 5.2 50 1-50 44-95 (102)
237 1fj7_A Nucleolin RBD1, protein 99.1 8.4E-11 2.9E-15 80.7 3.6 49 1-49 48-97 (101)
238 2cpy_A RNA-binding protein 12; 99.1 1.2E-10 4E-15 81.9 4.3 47 1-48 48-95 (114)
239 1oo0_B CG8781-PA, drosophila Y 99.0 2.7E-10 9.4E-15 79.3 6.1 48 1-48 58-107 (110)
240 2cpz_A CUG triplet repeat RNA- 99.0 1.8E-10 6.1E-15 81.0 5.2 50 1-50 57-108 (115)
241 1wez_A HnRNP H', FTP-3, hetero 99.0 8.4E-11 2.9E-15 81.0 3.2 47 1-48 46-93 (102)
242 1iqt_A AUF1, heterogeneous nuc 99.0 1.1E-10 3.7E-15 75.5 3.5 44 1-44 31-75 (75)
243 3s7r_A Heterogeneous nuclear r 99.0 1.6E-10 5.3E-15 77.1 4.2 44 1-44 43-87 (87)
244 2dhg_A TRNA selenocysteine ass 99.0 1.5E-10 5E-15 79.9 4.2 51 1-52 42-95 (104)
245 2e5h_A Zinc finger CCHC-type a 99.0 2.9E-10 1E-14 76.8 5.6 45 1-45 48-94 (94)
246 2dh8_A DAZ-associated protein 99.0 1.2E-10 4E-15 80.5 3.7 50 1-50 48-98 (105)
247 3mdf_A Peptidyl-prolyl CIS-tra 99.0 2.2E-10 7.6E-15 75.9 4.9 45 1-45 39-85 (85)
248 2dnn_A RNA-binding protein 12; 99.0 1.9E-10 6.5E-15 80.1 4.7 45 1-46 47-92 (109)
249 2dgw_A Probable RNA-binding pr 99.0 2.3E-10 7.9E-15 76.9 4.9 47 1-48 41-88 (91)
250 2j76_E EIF-4B, EIF4B, eukaryot 99.0 1.9E-10 6.5E-15 78.8 4.5 48 1-48 50-99 (100)
251 2cqd_A RNA-binding region cont 99.0 7.9E-10 2.7E-14 77.8 7.8 49 1-49 49-98 (116)
252 1p27_B RNA-binding protein 8A; 99.0 1.7E-10 5.6E-15 79.9 4.2 48 1-48 55-104 (106)
253 3n9u_C Cleavage and polyadenyl 99.0 1.2E-10 3.9E-15 86.5 3.6 47 1-47 89-137 (156)
254 2dgp_A Bruno-like 4, RNA bindi 99.0 4.6E-10 1.6E-14 77.6 6.4 50 1-50 45-99 (106)
255 2do4_A Squamous cell carcinoma 99.0 3.2E-10 1.1E-14 77.6 5.5 48 1-49 49-98 (100)
256 2dis_A Unnamed protein product 99.0 8.8E-10 3E-14 76.6 7.8 47 3-49 44-94 (109)
257 2cqc_A Arginine/serine-rich sp 99.0 2.7E-10 9.4E-15 77.1 4.9 46 1-46 47-94 (95)
258 2cph_A RNA binding motif prote 99.0 5.7E-10 2E-14 77.2 6.6 50 1-50 47-100 (107)
259 1wg5_A Heterogeneous nuclear r 99.0 4.2E-10 1.4E-14 77.7 5.7 47 1-48 48-95 (104)
260 2la6_A RNA-binding protein FUS 99.0 1.9E-10 6.4E-15 78.7 3.8 45 1-45 53-99 (99)
261 2fc9_A NCL protein; structure 99.0 8.1E-10 2.8E-14 75.7 7.0 48 1-49 44-93 (101)
262 2cqp_A RNA-binding protein 12; 99.0 2.7E-10 9.1E-15 77.7 4.6 46 2-47 48-95 (98)
263 2m2b_A RNA-binding protein 10; 99.0 3.3E-10 1.1E-14 81.6 5.0 48 1-49 57-110 (131)
264 1u6f_A Tcubp1, RNA-binding pro 99.0 5.6E-10 1.9E-14 81.1 6.3 50 1-50 74-125 (139)
265 3ucg_A Polyadenylate-binding p 99.0 3.1E-10 1E-14 75.9 4.5 47 1-47 38-85 (89)
266 2jrs_A RNA-binding protein 39; 99.0 1.9E-10 6.4E-15 80.0 3.5 48 1-48 58-107 (108)
267 2kn4_A Immunoglobulin G-bindin 99.0 7.8E-10 2.7E-14 82.1 7.1 49 1-49 102-152 (158)
268 2kxn_B Transformer-2 protein h 99.0 3.1E-10 1.1E-14 81.5 4.6 48 1-48 78-127 (129)
269 2fy1_A RNA-binding motif prote 99.0 7.1E-10 2.4E-14 78.1 6.3 48 1-49 39-88 (116)
270 2ek1_A RNA-binding protein 12; 99.0 3.2E-10 1.1E-14 76.8 4.0 46 1-46 47-94 (95)
271 3ex7_B RNA-binding protein 8A; 99.0 6.3E-10 2.2E-14 79.4 5.6 50 1-50 54-105 (126)
272 1ufw_A Synaptojanin 2; RNP dom 99.0 2E-09 6.7E-14 71.6 7.4 73 98-175 12-94 (95)
273 2div_A TRNA selenocysteine ass 99.0 3.6E-10 1.2E-14 77.2 3.7 48 1-48 42-95 (99)
274 2cq4_A RNA binding motif prote 99.0 3E-10 1E-14 79.7 3.2 48 1-48 57-105 (114)
275 1s79_A Lupus LA protein; RRM, 98.9 4E-10 1.4E-14 77.7 3.6 45 1-46 43-88 (103)
276 2cpi_A CCR4-NOT transcription 98.9 1E-09 3.6E-14 76.6 5.7 47 2-48 51-102 (111)
277 2cpf_A RNA binding motif prote 98.9 4.2E-10 1.4E-14 76.7 3.6 49 2-50 38-91 (98)
278 1p1t_A Cleavage stimulation fa 98.9 3.4E-10 1.1E-14 78.0 3.1 49 1-49 40-90 (104)
279 2ki2_A SS-DNA binding protein 98.9 3E-10 1E-14 76.1 2.7 48 1-49 33-82 (90)
280 2hgm_A HNRPF protein, heteroge 98.9 2.5E-10 8.4E-15 81.5 2.2 46 1-47 75-121 (126)
281 1h2v_Z 20 kDa nuclear CAP bind 98.9 8.8E-10 3E-14 81.7 5.3 50 1-50 71-122 (156)
282 2jwn_A Embryonic polyadenylate 98.9 1.1E-09 3.8E-14 77.9 5.5 48 1-48 68-116 (124)
283 2lea_A Serine/arginine-rich sp 98.9 8.2E-10 2.8E-14 79.9 4.8 49 1-49 79-129 (135)
284 2db1_A Heterogeneous nuclear r 98.9 5.2E-10 1.8E-14 79.1 3.6 46 1-47 52-98 (118)
285 2hgl_A HNRPF protein, heteroge 98.9 4E-10 1.4E-14 81.6 3.1 46 1-47 79-125 (136)
286 1uaw_A Mouse-musashi-1; RNP-ty 98.9 3.2E-10 1.1E-14 73.6 2.3 44 1-44 32-76 (77)
287 3lqv_A PRE-mRNA branch site pr 98.9 3.1E-10 1.1E-14 79.7 2.3 65 7-127 43-109 (115)
288 4a8x_A RNA-binding protein wit 98.9 9.1E-10 3.1E-14 73.3 4.5 48 1-48 36-86 (88)
289 2dgx_A KIAA0430 protein; RRM d 98.9 2.1E-09 7.2E-14 73.0 6.2 45 1-48 45-91 (96)
290 2d9p_A Polyadenylate-binding p 98.9 1.2E-09 4E-14 75.1 4.8 47 2-50 48-96 (103)
291 2pe8_A Splicing factor 45; RRM 98.9 1.1E-09 3.8E-14 75.7 4.7 46 1-46 45-93 (105)
292 2lmi_A GRSF-1, G-rich sequence 98.9 5.1E-10 1.7E-14 77.7 2.9 46 1-47 46-92 (107)
293 2dnh_A Bruno-like 5, RNA bindi 98.9 1.1E-09 3.9E-14 75.5 4.6 49 1-50 47-100 (105)
294 2kt5_A RNA and export factor-b 98.9 2.5E-09 8.5E-14 76.1 6.5 48 1-49 67-116 (124)
295 2khc_A Testis-specific RNP-typ 98.9 7E-10 2.4E-14 78.2 3.5 45 1-45 72-118 (118)
296 1wel_A RNA-binding protein 12; 98.9 3.2E-10 1.1E-14 80.9 1.6 46 2-47 58-104 (124)
297 3ulh_A THO complex subunit 4; 98.9 1.3E-09 4.4E-14 75.5 4.5 44 1-45 61-106 (107)
298 2lcw_A RNA-binding protein FUS 98.4 1.8E-10 6.2E-15 81.1 0.0 50 1-50 47-98 (116)
299 2do0_A HnRNP M, heterogeneous 98.9 4.3E-09 1.5E-13 73.6 7.1 47 1-48 47-95 (114)
300 2dha_A FLJ20171 protein; RRM d 98.9 4.6E-10 1.6E-14 79.9 1.8 46 1-47 59-105 (123)
301 3q2s_C Cleavage and polyadenyl 98.9 6.1E-10 2.1E-14 87.9 2.5 47 1-47 102-150 (229)
302 1jmt_A Splicing factor U2AF 35 98.9 1.8E-09 6.2E-14 74.5 4.5 43 1-44 59-103 (104)
303 2wbr_A GW182, gawky, LD47780P; 98.9 2.9E-09 9.9E-14 70.4 5.2 38 8-45 40-79 (89)
304 2cqi_A Nucleolysin TIAR; RNA r 98.9 4.8E-09 1.6E-13 72.0 6.5 47 2-50 48-96 (103)
305 2ywk_A Putative RNA-binding pr 98.9 1.5E-09 5E-14 73.4 3.8 45 1-46 48-94 (95)
306 1x4e_A RNA binding motif, sing 98.9 4.1E-10 1.4E-14 74.6 1.0 45 1-45 37-83 (85)
307 2xs2_A Deleted in azoospermia- 98.9 5.4E-10 1.8E-14 76.7 1.4 48 1-49 41-88 (102)
308 2hgn_A Heterogeneous nuclear r 98.9 6.4E-10 2.2E-14 80.8 1.9 48 1-49 77-125 (139)
309 2nlw_A Eukaryotic translation 98.8 3.1E-09 1.1E-13 73.4 5.0 44 5-48 55-101 (105)
310 3v4m_A Splicing factor U2AF 65 98.8 5E-09 1.7E-13 72.4 5.8 46 1-46 47-96 (105)
311 1rk8_A CG8781-PA, CG8781-PA pr 98.8 2.3E-09 7.8E-14 80.2 4.4 49 1-49 104-154 (165)
312 2cpx_A Hypothetical protein FL 98.8 2.6E-09 8.9E-14 74.9 4.2 47 4-50 60-108 (115)
313 2a3j_A U1 small nuclear ribonu 98.8 2.5E-09 8.5E-14 76.5 4.1 44 6-49 67-112 (127)
314 2cq3_A RNA-binding protein 9; 98.8 7.5E-09 2.6E-13 71.1 6.1 47 2-50 48-96 (103)
315 1fjc_A Nucleolin RBD2, protein 98.8 5.8E-09 2E-13 70.6 5.4 45 5-49 47-93 (96)
316 2dgv_A HnRNP M, heterogeneous 98.8 3.3E-09 1.1E-13 71.2 3.5 44 6-49 43-88 (92)
317 1x5o_A RNA binding motif, sing 98.8 4.7E-09 1.6E-13 73.5 4.2 46 1-47 57-112 (114)
318 2dnl_A Cytoplasmic polyadenyla 98.8 9.6E-09 3.3E-13 72.0 5.7 46 1-46 39-87 (114)
319 2j8a_A Histone-lysine N-methyl 98.8 2.7E-09 9.1E-14 75.4 2.8 45 1-45 38-94 (136)
320 1x4a_A Splicing factor, argini 98.8 1.5E-08 5E-13 70.3 6.3 45 6-50 56-102 (109)
321 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.2E-08 4.2E-13 69.6 5.7 42 8-49 51-92 (100)
322 3dxb_A Thioredoxin N-terminall 98.7 2.6E-08 9E-13 78.0 7.7 74 101-174 124-211 (222)
323 2krb_A Eukaryotic translation 98.7 5.2E-09 1.8E-13 68.6 3.0 37 5-41 41-80 (81)
324 2jvr_A Nucleolar protein 3; RN 98.7 1.6E-08 5.5E-13 70.5 5.5 40 8-47 64-105 (111)
325 3egn_A RNA-binding protein 40; 98.7 6.7E-09 2.3E-13 75.7 3.3 45 5-49 86-132 (143)
326 2err_A Ataxin-2-binding protei 98.7 1.1E-08 3.9E-13 71.0 4.2 44 2-47 62-107 (109)
327 2e5j_A Methenyltetrahydrofolat 98.7 1.1E-08 3.7E-13 69.5 3.8 42 7-48 52-95 (97)
328 3pgw_S U1-70K; protein-RNA com 98.7 2.9E-08 1E-12 85.4 7.4 50 1-50 134-185 (437)
329 1x5p_A Negative elongation fac 98.7 4.3E-08 1.5E-12 66.5 6.4 42 8-49 46-89 (97)
330 3ue2_A Poly(U)-binding-splicin 98.7 8.6E-09 2.9E-13 72.6 2.8 40 7-46 67-108 (118)
331 1nu4_A U1A RNA binding domain; 98.7 1.1E-08 3.9E-13 69.2 3.3 43 7-49 47-91 (97)
332 2dit_A HIV TAT specific factor 98.6 3.8E-08 1.3E-12 68.7 5.1 42 9-50 62-105 (112)
333 1sjq_A Polypyrimidine tract-bi 98.6 2.6E-08 8.8E-13 68.5 4.0 41 10-50 51-95 (105)
334 2cqh_A IGF-II mRNA-binding pro 98.6 4.2E-08 1.4E-12 65.9 5.0 42 9-50 42-86 (93)
335 3r27_A HnRNP L, heterogeneous 98.6 4.9E-08 1.7E-12 66.5 5.0 40 9-48 55-98 (100)
336 2cq1_A PTB-like protein L; RRM 98.6 6.5E-08 2.2E-12 66.2 5.6 41 10-50 50-94 (101)
337 1wg1_A KIAA1579 protein, homol 98.6 5.2E-08 1.8E-12 64.8 4.8 39 9-47 38-78 (88)
338 2cpd_A Apobec-1 stimulating pr 98.6 1.1E-07 3.7E-12 64.7 6.4 41 9-49 49-91 (99)
339 1x4f_A Matrin 3; structural ge 98.6 5.3E-08 1.8E-12 67.8 4.8 42 9-50 60-105 (112)
340 3d2w_A TAR DNA-binding protein 98.6 7.6E-08 2.6E-12 64.2 5.2 40 10-49 47-86 (89)
341 2dgu_A Heterogeneous nuclear r 98.6 2.6E-07 8.9E-12 63.3 7.7 42 10-51 44-87 (103)
342 1x4g_A Nucleolysin TIAR; struc 98.5 1E-07 3.5E-12 66.0 5.4 40 11-50 61-102 (109)
343 2la4_A Nuclear and cytoplasmic 98.5 4.4E-08 1.5E-12 66.9 3.4 39 9-47 61-101 (101)
344 1x4d_A Matrin 3; structural ge 98.5 1E-07 3.5E-12 65.3 4.9 40 10-49 51-94 (102)
345 2diu_A KIAA0430 protein; struc 98.5 8.9E-08 3.1E-12 63.9 4.3 39 12-50 47-87 (96)
346 2e5g_A U6 snRNA-specific termi 98.5 8.3E-08 2.8E-12 64.6 4.3 45 2-49 39-84 (94)
347 2dnq_A RNA-binding protein 4B; 98.5 1.3E-07 4.6E-12 63.0 5.3 40 11-50 42-83 (90)
348 2bz2_A Negative elongation fac 98.5 1E-07 3.5E-12 67.4 4.7 41 9-49 71-113 (121)
349 2xnq_A Nuclear polyadenylated 98.5 1.4E-07 4.9E-12 63.9 5.3 38 10-47 56-95 (97)
350 1wex_A Hypothetical protein (r 98.5 2.4E-07 8.1E-12 63.7 6.3 40 10-49 50-93 (104)
351 2cpj_A Non-POU domain-containi 98.5 8.5E-08 2.9E-12 65.2 3.9 41 9-49 49-91 (99)
352 1wf0_A TDP-43, TAR DNA-binding 98.5 1.2E-07 4.1E-12 63.0 4.4 41 10-50 41-81 (88)
353 2dgt_A RNA-binding protein 30; 98.5 3.8E-07 1.3E-11 61.0 6.5 40 10-49 43-84 (92)
354 1x4c_A Splicing factor, argini 98.5 1.9E-07 6.6E-12 64.5 5.2 39 12-50 51-96 (108)
355 2l9w_A U4/U6 snRNA-associated- 98.5 1.5E-06 5.2E-11 59.0 9.3 69 100-171 20-95 (117)
356 1why_A Hypothetical protein ri 98.5 1.8E-07 6.2E-12 63.3 4.7 38 11-48 53-94 (97)
357 1wf1_A RNA-binding protein RAL 98.4 1.7E-07 5.8E-12 65.0 4.5 39 10-48 61-101 (110)
358 2jvo_A Nucleolar protein 3; nu 98.4 1.9E-07 6.5E-12 64.7 4.6 39 11-49 65-105 (108)
359 3s6e_A RNA-binding protein 39; 98.4 1.9E-07 6.4E-12 65.3 4.4 37 10-46 54-92 (114)
360 2kvi_A Nuclear polyadenylated 98.4 1.3E-07 4.5E-12 63.9 3.5 40 10-49 44-85 (96)
361 2ytc_A PRE-mRNA-splicing facto 98.4 2.1E-07 7E-12 61.3 4.4 37 9-45 46-85 (85)
362 2ad9_A Polypyrimidine tract-bi 98.4 2.1E-07 7.1E-12 65.5 4.6 41 10-50 66-110 (119)
363 2e44_A Insulin-like growth fac 98.4 2.1E-07 7.3E-12 62.7 4.4 43 2-48 49-93 (96)
364 2dnp_A RNA-binding protein 14; 98.4 3.9E-07 1.3E-11 60.7 5.6 39 11-49 43-83 (90)
365 2hzc_A Splicing factor U2AF 65 98.4 2.8E-07 9.5E-12 60.9 4.7 36 8-43 50-86 (87)
366 1whx_A Hypothetical protein ri 98.4 2.3E-07 7.8E-12 64.6 4.3 39 9-47 44-84 (111)
367 1sjr_A Polypyrimidine tract-bi 98.4 3.6E-07 1.2E-11 67.7 5.4 42 8-49 81-126 (164)
368 2dhx_A Poly (ADP-ribose) polym 98.4 1.1E-05 3.9E-10 54.2 11.9 76 99-179 6-87 (104)
369 2cq2_A Hypothetical protein LO 98.3 7.5E-07 2.6E-11 62.1 4.9 38 10-47 62-106 (114)
370 3zzy_A Polypyrimidine tract-bi 98.3 9.5E-07 3.2E-11 63.0 5.2 41 9-49 63-108 (130)
371 3beg_B Splicing factor, argini 98.1 1.8E-06 6.2E-11 60.3 4.2 37 12-48 52-95 (115)
372 2e5i_A Heterogeneous nuclear r 98.1 3E-06 1E-10 60.0 5.2 38 12-49 62-104 (124)
373 2dnr_A Synaptojanin-1; RRM dom 97.9 1.3E-05 4.5E-10 52.9 4.9 35 13-47 51-86 (91)
374 1wey_A Calcipressin 1; structu 97.7 0.00021 7.1E-09 48.2 7.8 75 100-177 4-85 (104)
375 1whv_A Poly(A)-specific ribonu 97.7 0.00021 7.3E-09 47.4 7.3 55 98-158 13-67 (100)
376 1ufw_A Synaptojanin 2; RNP dom 97.6 4.9E-05 1.7E-09 50.5 3.1 32 14-45 61-93 (95)
377 3tht_A Alkylated DNA repair pr 97.3 0.0002 6.8E-09 59.4 4.6 36 10-45 55-97 (345)
378 1wwh_A Nucleoporin 35, nucleop 97.3 0.001 3.5E-08 46.1 7.4 72 98-173 21-94 (119)
379 3ctr_A Poly(A)-specific ribonu 97.3 0.00041 1.4E-08 46.2 5.1 51 102-158 7-57 (101)
380 2f3j_A RNA and export factor b 97.2 0.00025 8.4E-09 53.3 3.4 25 6-30 124-148 (177)
381 1uw4_A UPF3X; nonsense mediate 96.9 0.0045 1.5E-07 40.9 7.1 60 102-161 2-68 (91)
382 2dhx_A Poly (ADP-ribose) polym 96.8 0.0016 5.4E-08 43.8 4.5 34 12-45 48-82 (104)
383 2i2y_A Fusion protein consists 96.6 0.0011 3.9E-08 48.0 2.7 21 10-30 109-129 (150)
384 3u1l_A PRE-mRNA-splicing facto 96.6 0.0015 5.2E-08 51.3 3.5 22 9-30 177-198 (240)
385 3pq1_A Poly(A) RNA polymerase; 96.5 0.0015 5.2E-08 56.1 3.4 55 101-158 53-107 (464)
386 3p3d_A Nucleoporin 53; structu 96.4 0.0057 2E-07 43.0 5.3 73 101-174 7-97 (132)
387 2l08_A Regulator of nonsense t 95.3 0.02 7E-07 38.0 4.1 58 100-157 8-70 (97)
388 2l9w_A U4/U6 snRNA-associated- 94.9 0.038 1.3E-06 37.5 4.4 33 12-44 63-97 (117)
389 1owx_A Lupus LA protein, SS-B, 94.3 0.056 1.9E-06 37.6 4.5 33 13-45 57-94 (121)
390 3d45_A Poly(A)-specific ribonu 89.7 1.1 3.8E-05 39.0 7.8 53 100-158 439-491 (507)
391 3p3d_A Nucleoporin 53; structu 84.3 1.2 4.2E-05 31.1 4.1 35 11-45 62-97 (132)
392 1wey_A Calcipressin 1; structu 79.4 1.9 6.3E-05 28.9 3.4 34 14-47 49-84 (104)
393 1wwh_A Nucleoporin 35, nucleop 77.9 2.5 8.6E-05 29.0 3.8 35 10-44 58-94 (119)
394 4e8u_A Putative uncharacterize 72.1 8.3 0.00028 28.2 5.5 56 102-157 13-80 (172)
395 4eyt_A Telomerase associated p 71.1 18 0.00061 23.3 9.1 72 99-175 10-90 (129)
396 4fdd_B RNA-binding protein FUS 54.6 11 0.00038 18.5 2.2 10 225-234 20-29 (29)
397 3ts2_A Protein LIN-28 homolog 45.9 4.2 0.00014 29.1 -0.1 28 116-148 2-29 (148)
398 2pk2_A Cyclin-T1, protein TAT; 40.0 6 0.00021 32.7 0.0 12 112-123 228-239 (358)
399 3zzp_A TS9, ribosomal protein 38.2 60 0.002 20.1 4.5 23 102-126 47-69 (77)
400 3fut_A Dimethyladenosine trans 34.4 38 0.0013 26.5 3.9 32 102-134 111-142 (271)
401 3cam_A Cold-shock domain famil 31.9 19 0.00064 21.7 1.3 12 9-20 11-22 (67)
402 1c9o_A CSPB, cold-shock protei 31.1 20 0.00067 21.5 1.3 12 9-20 11-22 (66)
403 3a0j_A Cold shock protein; OB- 29.8 21 0.00072 21.9 1.3 12 9-20 11-22 (73)
404 3ulj_A LIN28B, DNA-binding pro 29.5 23 0.00079 22.8 1.5 10 9-18 18-27 (90)
405 3uzu_A Ribosomal RNA small sub 29.3 25 0.00086 27.7 2.0 33 102-134 115-147 (279)
406 1h95_A CSD, Y-box binding prot 29.2 22 0.00074 22.2 1.3 11 9-19 18-28 (79)
407 1g6p_A Cold shock protein TMCS 29.2 22 0.00076 21.3 1.3 12 9-20 10-21 (66)
408 2e5p_A Protein PHF1, PHD finge 28.9 37 0.0013 20.4 2.2 20 126-150 28-47 (68)
409 3i2z_B RNA chaperone, negative 27.0 25 0.00086 21.4 1.3 12 9-20 15-26 (71)
410 2v94_A RPS24, 30S ribosomal pr 26.7 37 0.0012 22.7 2.1 20 7-27 70-89 (107)
411 2kjw_A TS9, 30S ribosomal prot 26.7 86 0.0029 20.3 3.9 24 13-36 7-30 (96)
412 2k5n_A Putative cold-shock pro 25.9 33 0.0011 21.1 1.7 12 9-20 12-23 (74)
413 1xn9_A 30S ribosomal protein S 25.9 34 0.0012 22.6 1.8 21 7-28 61-81 (101)
414 1qyr_A KSGA, high level kasuga 25.6 56 0.0019 25.2 3.4 32 102-133 91-122 (252)
415 3lpe_A Putative transcription 25.4 65 0.0022 20.6 3.2 21 10-30 49-69 (92)
416 1ywx_A 30S ribosomal protein S 25.0 36 0.0012 22.5 1.8 20 7-27 61-80 (102)
417 2g1d_A 30S ribosomal protein S 24.5 31 0.0011 22.6 1.5 20 7-27 62-81 (98)
418 2kcm_A Cold shock domain famil 24.5 37 0.0013 20.9 1.7 12 9-20 10-21 (74)
419 2yty_A Cold shock domain-conta 23.9 31 0.0011 22.0 1.3 9 11-19 28-36 (88)
420 2ytx_A Cold shock domain-conta 22.9 33 0.0011 22.4 1.3 11 10-20 27-37 (97)
421 3tqs_A Ribosomal RNA small sub 22.6 28 0.00095 27.0 1.1 31 104-134 99-129 (255)
422 3ftd_A Dimethyladenosine trans 22.4 55 0.0019 25.1 2.8 30 102-131 96-125 (249)
423 3aqq_A Calcium-regulated heat 22.4 39 0.0013 23.9 1.7 12 9-20 72-83 (147)
424 2m0o_A PHD finger protein 1; t 22.3 57 0.0019 20.2 2.2 20 126-150 45-64 (79)
425 3j21_T 50S ribosomal protein L 22.0 1.6E+02 0.0054 18.6 5.7 54 103-156 24-79 (86)
426 3h7h_B Transcription elongatio 21.1 85 0.0029 20.8 3.1 27 9-35 49-75 (106)
427 1i4w_A Mitochondrial replicati 20.7 79 0.0027 25.9 3.5 22 103-124 144-165 (353)
428 2lss_A Cold shock-like protein 26.1 21 0.00072 21.7 0.0 12 9-20 14-25 (70)
429 2ytv_A Cold shock domain-conta 20.3 29 0.001 21.6 0.6 11 10-20 17-27 (79)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.4e-30 Score=198.99 Aligned_cols=139 Identities=31% Similarity=0.597 Sum_probs=111.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++.....+.
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~------------------------- 99 (196)
T 1l3k_A 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG------------------------- 99 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------------------
T ss_pred EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccc-------------------------
Confidence 46788999999999999999999999995 6789999999999987654322110
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A 156 (234)
.....++|||+|||+++|+++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|.+|
T Consensus 100 -----------------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 100 -----------------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred -----------------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 13456899999999999999999999999999999998 3466 899999999999999999
Q ss_pred Hh-cCCccCCeEeEEEeCCCCCCCCC
Q 026724 157 SR-RSHEICGQQVAIDSATPLDDAGP 181 (234)
Q Consensus 157 ~~-~~~~~~g~~i~v~~a~~~~~~~~ 181 (234)
|. +++.|+|+.|.|.++.++.+...
T Consensus 163 ~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 163 VIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHCSCCEETTEECEEEECC-------
T ss_pred HHhCCcEECCEEEEEEecCChhHhcc
Confidence 84 67799999999999999887654
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6.4e-30 Score=193.20 Aligned_cols=129 Identities=33% Similarity=0.627 Sum_probs=114.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
|++|+.|++++|||||+|.+.++|++||.+++.|+|+.|.|.++.++..
T Consensus 35 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~------------------------------- 83 (167)
T 2cjk_A 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE------------------------------- 83 (167)
T ss_dssp CCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-------------------------------
T ss_pred EEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-------------------------------
Confidence 5789999999999999999999999999988999999999988764321
Q ss_pred CCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH
Q 026724 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~ 157 (234)
.....+|||+|||+++++++|+++|++||.|..|.++ +.++ ++|||||+|.+.++|.+|+
T Consensus 84 -----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 84 -----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp -----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred -----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 1135689999999999999999999999999999998 3467 9999999999999999999
Q ss_pred h-cCCccCCeEeEEEeCCCCC
Q 026724 158 R-RSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 158 ~-~~~~~~g~~i~v~~a~~~~ 177 (234)
. ++..+.|+.|.|.+|.|+.
T Consensus 147 ~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 147 QNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HCSEECSSSSCEEEEECCCCC
T ss_pred hCCCEEeCCeEEEEeecCCCC
Confidence 5 6679999999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=4.3e-29 Score=196.41 Aligned_cols=132 Identities=19% Similarity=0.290 Sum_probs=115.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|++++|||||+|.+.++|++||. ++..+.|+.|+|.++.......
T Consensus 47 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------------------------- 99 (213)
T 4f02_A 47 VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------------------------- 99 (213)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---------------------------
T ss_pred EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc---------------------------
Confidence 46899999999999999999999999994 6889999999999876432211
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~ 157 (234)
.....+|||+|||+++|+++|+++|++||.|..|.|+.+.+ ++|||||+|.+.++|.+||
T Consensus 100 -------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 100 -------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp -------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHH
T ss_pred -------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHH
Confidence 12356899999999999999999999999999999995555 8999999999999999998
Q ss_pred --hcCCccCCeEeEEEeCCCCCC
Q 026724 158 --RRSHEICGQQVAIDSATPLDD 178 (234)
Q Consensus 158 --~~~~~~~g~~i~v~~a~~~~~ 178 (234)
+++..|+|+.|+|.+|.++.+
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHTTCEETTEECEEEECCCHHH
T ss_pred HHhCCCEECCEEEEEEEcCCCcc
Confidence 478899999999999988654
No 4
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=3.9e-28 Score=184.90 Aligned_cols=128 Identities=19% Similarity=0.346 Sum_probs=111.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
+++|..++++||||||+|.+.++|++||+ +++.|.|++|.|.++.++....
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~---------------------------- 95 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKK---------------------------- 95 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCST----------------------------
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccc----------------------------
Confidence 36778899999999999999999999994 7889999999999987653221
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~ 158 (234)
....++|||+|||+++++++|+++|++||.|..+ ..++ ++|||||+|.+.++|.+|+.
T Consensus 96 ------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 96 ------------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp ------------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred ------------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHH
Confidence 2346799999999999999999999999998776 5555 89999999999999999984
Q ss_pred --cCCccCCeEeEEEeCCCCC
Q 026724 159 --RSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 159 --~~~~~~g~~i~v~~a~~~~ 177 (234)
++..|.|+.|.|.++.++.
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHTEEEETTEEEEEEECSSCC
T ss_pred HhCCCEECCeEEEEEecCCCC
Confidence 7789999999999998863
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=2.9e-27 Score=178.63 Aligned_cols=125 Identities=21% Similarity=0.351 Sum_probs=110.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|++++|||||+|.+.++|++|+. ++..|.|++|.|.++.+...
T Consensus 35 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 85 (168)
T 1b7f_A 35 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----------------------------- 85 (168)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----------------------------
T ss_pred EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----------------------------
Confidence 46788899999999999999999999994 78899999999999875432
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~ 155 (234)
....++|||+|||..+++++|+++|++||.|..+.++. .++ ++|||||+|.+.++|.+
T Consensus 86 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 86 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp -------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 23467999999999999999999999999999999883 356 89999999999999999
Q ss_pred HH--hcCCccCC--eEeEEEeC
Q 026724 156 VS--RRSHEICG--QQVAIDSA 173 (234)
Q Consensus 156 A~--~~~~~~~g--~~i~v~~a 173 (234)
|+ +++..+.| ++|+|++|
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 98 47788987 99999986
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-27 Score=176.34 Aligned_cols=127 Identities=21% Similarity=0.353 Sum_probs=110.3
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
++|+. ++++|||||+|.+.++|++|+. ++..|.|+.|.|.++.+.....
T Consensus 33 ~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~---------------------------- 83 (166)
T 3md3_A 33 MIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSS---------------------------- 83 (166)
T ss_dssp ECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCC----------------------------
T ss_pred EECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCC----------------------------
Confidence 45664 7799999999999999999994 7889999999999986543211
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A 156 (234)
.....+|||+|||+.+++++|+++|++||.|..+.++ +.++ ++|||||+|.+.++|.+|
T Consensus 84 ------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 84 ------------------SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp ------------------CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred ------------------CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 3457799999999999999999999999999999998 4566 899999999999999999
Q ss_pred H--hcCCccCCeEeEEEeCCC
Q 026724 157 S--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 157 ~--~~~~~~~g~~i~v~~a~~ 175 (234)
+ +++..++|+.|+|.||++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 8 478899999999999864
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=4.1e-27 Score=184.92 Aligned_cols=143 Identities=20% Similarity=0.407 Sum_probs=114.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|++++|||||+|.+.++|++||+ ++..|.|+.|.|.++........ .......
T Consensus 60 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~------------------~~~~~~~- 120 (216)
T 2qfj_A 60 MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQP------------------IIDQLAE- 120 (216)
T ss_dssp ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHH------------------HHHHHHH-
T ss_pred EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccch------------------hhhhhhc-
Confidence 46888899999999999999999999995 68899999999988764432100 0000000
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~ 155 (234)
.....++|||+|||.++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|.+
T Consensus 121 ------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 121 ------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 02346899999999999999999999999999999998 3466 89999999999999999
Q ss_pred HHh--cCCccCCeEeEEEeCCCCCCCC
Q 026724 156 VSR--RSHEICGQQVAIDSATPLDDAG 180 (234)
Q Consensus 156 A~~--~~~~~~g~~i~v~~a~~~~~~~ 180 (234)
|+. ++..|.|+.|+|.++.++....
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 984 7889999999999999876544
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1e-26 Score=180.19 Aligned_cols=148 Identities=18% Similarity=0.302 Sum_probs=115.6
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCC
Q 026724 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (234)
+..+++++|||||+|.+.++|++|| ++++.|.|++|.|.++...............
T Consensus 44 ~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~----------------------- 100 (198)
T 2yh0_A 44 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV----------------------- 100 (198)
T ss_dssp EEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSC-----------------------
T ss_pred EeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcC-----------------------
Confidence 3456789999999999999999999 4688999999999988765432211000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CCC-CcceEEEEEcChHHHHHHHh-
Q 026724 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVSR- 158 (234)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~A~~- 158 (234)
..+. ..........++|||+|||+.+++++|+++|++||.|..|.++. .++ ++|||||+|.+.++|.+|+.
T Consensus 101 --~~~~---~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 101 --YVPG---VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp --CCTT---SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred --CCCC---CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 0000 00111135678999999999999999999999999999999983 366 89999999999999999984
Q ss_pred -cCCccCCeEeEEEeCCCCCCC
Q 026724 159 -RSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 159 -~~~~~~g~~i~v~~a~~~~~~ 179 (234)
++..|+|+.|.|.++.++...
T Consensus 176 l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 176 LNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp HTTCEETTEECEEEESCCCCCC
T ss_pred cCCCEECCEEEEEEECCCCCCC
Confidence 788999999999999987643
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=6.9e-27 Score=176.18 Aligned_cols=125 Identities=24% Similarity=0.488 Sum_probs=109.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.|++++|||||+|.+.++|++|++ ++..|.|++|.|.++.+...
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------------------- 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----------------------------
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----------------------------
Confidence 35788899999999999999999999994 78899999999999875432
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~ 155 (234)
.....+|||+|||..+++++|+++|++||.|..+.++ +.++ ++|||||+|.+.++|.+
T Consensus 85 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 85 -------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp -------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred -------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 2246789999999999999999999999999999988 3356 89999999999999999
Q ss_pred HHh--cCCccCCeE--eEEEeC
Q 026724 156 VSR--RSHEICGQQ--VAIDSA 173 (234)
Q Consensus 156 A~~--~~~~~~g~~--i~v~~a 173 (234)
|+. ++..+.|+. |.|+||
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 984 788999975 888876
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=1.2e-26 Score=175.98 Aligned_cols=122 Identities=19% Similarity=0.405 Sum_probs=106.6
Q ss_pred CCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCc
Q 026724 5 QGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (234)
..++++||||||+|.+.++|++|+ ++++.|.|++|.|.++.....
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------------------------------- 90 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------------------------------- 90 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----------------------------------
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----------------------------------
Confidence 345788999999999999999999 468899999999998654321
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CCC-CcceEEEEEcChHHHHHHHh--
Q 026724 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVSR-- 158 (234)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~A~~-- 158 (234)
.....+|||+|||+.+++++|+++|++||.|..|.++. .++ ++|||||+|.+.++|.+|+.
T Consensus 91 --------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 91 --------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp --------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 22367899999999999999999999999999999983 466 89999999999999999984
Q ss_pred cCCccCCeEeEEEeCC
Q 026724 159 RSHEICGQQVAIDSAT 174 (234)
Q Consensus 159 ~~~~~~g~~i~v~~a~ 174 (234)
++..++|+.|.|++|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 7889999999999973
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=7e-26 Score=185.34 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=117.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+.||+++|||||+|.+.++|.+|+. ++..|.|++|.|.++.++.....
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~-------------------------- 180 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA-------------------------- 180 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTT--------------------------
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc--------------------------
Confidence 35788899999999999999999999993 78899999999999876532211
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCC-CHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADR 155 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~ 155 (234)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ ..++ ++|+|||+|.+.++|.+
T Consensus 181 -------------------~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 181 -------------------LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp -------------------TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred -------------------cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 3457899999999995 999999999999999999988 4456 89999999999999999
Q ss_pred HH--hcCCccCCeEeEEEeCCCCCCC
Q 026724 156 VS--RRSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 156 A~--~~~~~~~g~~i~v~~a~~~~~~ 179 (234)
|+ +++..|.|+.|.|.++.++..+
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCSSSCH
T ss_pred HHHHhCCCccCCeEEEEEEecCCCcc
Confidence 98 4788999999999999987753
No 12
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=1.3e-25 Score=168.45 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=74.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
.....+|||+|||+++++++|+++|++||.|..|.|+. .++ ++|||||+|.+.++|++||. +++.|.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999983 467 99999999999999999994 77899999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+.++.+..
T Consensus 147 a~~~~~~~ 154 (158)
T 2kn4_A 147 ARYGRPPD 154 (158)
T ss_dssp ECCSSCCC
T ss_pred CCCCCCCC
Confidence 99876544
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=2.5e-25 Score=182.69 Aligned_cols=135 Identities=20% Similarity=0.343 Sum_probs=106.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (234)
|++|+. ++++|||||+|.+.++|++|+. +++.|.|++|.|.++.++......
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------------------------- 203 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------------------------- 203 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------------------
Confidence 455665 8899999999999999999995 788999999999999865443211
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCC-CCHHHHHHHHhhcCceeEEEeec-C--CC-CcceEEEEEcChHHH
Q 026724 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPK-R--TG-HRGFGFVTFAEEVVA 153 (234)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~-~--~~-~~g~afV~f~~~~~a 153 (234)
.......++|||+|||+. +++++|+++|++||.|..|.|+. . ++ ++|||||+|.+.++|
T Consensus 204 ----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 204 ----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp -------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred ----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 001446789999999999 99999999999999999999983 2 37 899999999999999
Q ss_pred HHHH-hcCCccCCeEeEEEeCCCCC
Q 026724 154 DRVS-RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 154 ~~A~-~~~~~~~g~~i~v~~a~~~~ 177 (234)
.+|+ +++..|.|+.|.|.|+.+++
T Consensus 268 ~~A~~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 268 ERALQMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHGGGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHhcCCEECCcEEEEEEecCCC
Confidence 9999 46779999999999999874
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=1.5e-25 Score=170.26 Aligned_cols=127 Identities=20% Similarity=0.399 Sum_probs=103.9
Q ss_pred CCCCCCCC--CccceEEEEEcCHHHHHHHHh--cCceeC---CcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhh
Q 026724 1 MPKDQGSK--AHRGIGFITFASADSVENLMV--DTHELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT 73 (234)
Q Consensus 1 l~rD~~tg--~srG~aFV~F~~~e~A~~Al~--~~~~i~---gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (234)
|++|+.++ +++|||||+|.+.++|++|+. ++..+. ++.+.+.++.+....
T Consensus 35 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 91 (175)
T 3nmr_A 35 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN----------------------- 91 (175)
T ss_dssp EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS-----------------------
T ss_pred EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc-----------------------
Confidence 35677777 999999999999999999994 555554 577777776543321
Q ss_pred hhhhcCCCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChH
Q 026724 74 RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEV 151 (234)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~ 151 (234)
....++|||+|||+++|+++|+++|++||.|..|.++ ..++ ++|||||+|.+.+
T Consensus 92 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 92 ------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp ------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred ------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 2346789999999999999999999999999999998 4456 8999999999999
Q ss_pred HHHHHHh--cCCccC---CeEeEEEeCC
Q 026724 152 VADRVSR--RSHEIC---GQQVAIDSAT 174 (234)
Q Consensus 152 ~a~~A~~--~~~~~~---g~~i~v~~a~ 174 (234)
+|.+|+. ++..+. +++|.|+||.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999984 555554 4999999984
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=8e-25 Score=170.87 Aligned_cols=152 Identities=13% Similarity=0.141 Sum_probs=103.0
Q ss_pred ccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccch-hhhhhhhcCCCCccCC
Q 026724 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS-AATRYAALGAPTLYDH 86 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (234)
+||||||+|.+.++|++|| +++..|.|++|.|.++..+....+...... ........+.. ...++.. +..
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~r~~~---~~~--- 113 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLE-DGSCSYKDFSESRNNRFST---PEQ--- 113 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCT-TSCBSEEECTTCTTCSCSS---HHH---
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccc-cCCccccccCCCccccccC---ccc---
Confidence 5899999999999999999 489999999999999865432111100000 00000000000 0000000 000
Q ss_pred CCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCce--eEEEeecCCC-CcceEEEEEcChHHHHHHH--hcCC
Q 026724 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKRTG-HRGFGFVTFAEEVVADRVS--RRSH 161 (234)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~~~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~ 161 (234)
........++++|||+|||+++|+++|+++|++||.| .+|+++.+.+ ++|||||+|.+.++|.+|| +++.
T Consensus 114 -----~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 114 -----AAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp -----HTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred -----ccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 0000013457899999999999999999999999999 8898885545 7799999999999999998 4777
Q ss_pred ccCCe----EeEEEeC
Q 026724 162 EICGQ----QVAIDSA 173 (234)
Q Consensus 162 ~~~g~----~i~v~~a 173 (234)
.|.|+ ++.|+++
T Consensus 189 ~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 189 QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECCSSSSSCEECEEE
T ss_pred CccCCCCCcceEEEec
Confidence 88776 6777765
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=1.7e-23 Score=171.04 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccC-CeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEIC-GQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~-g~~i~v~~a~ 174 (234)
....++|||+|||..+++++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|.+|+ +++..|. |+.|+|.|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG--RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC--CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 446789999999999999999999999999999999854 3699999999999999998 4777888 9999999986
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=1.3e-23 Score=166.80 Aligned_cols=150 Identities=14% Similarity=0.267 Sum_probs=106.7
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccch-hhhhhhhcCCCCccCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS-AATRYAALGAPTLYDHP 87 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (234)
+|||||+|.+.++|++||+ ++..|.|+.|.|.++.++............. ....+.. ...+. ..+
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~ 139 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG---LTKDYGNSPLHRF---------KKP 139 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTT---TEEECTTCSSCCC---------CST
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccc---cccccccCccccc---------CCc
Confidence 8999999999999999994 7889999999999987653221110000000 0000000 00000 000
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccC
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEIC 164 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~ 164 (234)
. .........+.++|||+|||+.+++++|+++|++|| .|..|.+++. .++||||+|.+.++|.+|+ +++..+.
T Consensus 140 ~--~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 140 G--SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp T--SGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred c--ccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 0 000011134578999999999999999999999999 9999999743 4799999999999999998 4788999
Q ss_pred -CeEeEEEeCCCC
Q 026724 165 -GQQVAIDSATPL 176 (234)
Q Consensus 165 -g~~i~v~~a~~~ 176 (234)
|+.|+|.|++++
T Consensus 216 ~g~~l~v~~a~~~ 228 (229)
T 2adc_A 216 ENHHLRVSFSKST 228 (229)
T ss_dssp SSCBCEEEECSSC
T ss_pred CCCeEEEEEecCC
Confidence 999999999874
No 18
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=7.7e-24 Score=157.43 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=108.3
Q ss_pred CCCccceEEEEEcCHHHHHHHHh---cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCc
Q 026724 7 SKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~---~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (234)
..+.+|+++|+|.+.++|++|++ ++..|+| .|.+.++..+..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------------------- 61 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------------------- 61 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC--------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc--------------------------
Confidence 45789999999999999999994 6789999 99999876532211100000
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCC
Q 026724 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSH 161 (234)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~ 161 (234)
............++|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+|+ +++.
T Consensus 62 ------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 62 ------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp ------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred ------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 00001112456789999999999999999999999999999999865 6899999999999999998 4788
Q ss_pred ccCCeEeEEEeCCCCC
Q 026724 162 EICGQQVAIDSATPLD 177 (234)
Q Consensus 162 ~~~g~~i~v~~a~~~~ 177 (234)
.|.|+.|+|.++.++.
T Consensus 134 ~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 134 TLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSSSSCCEEEECCCCC
T ss_pred EECCeEEEEEEcCCCC
Confidence 9999999999998864
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=1.2e-23 Score=163.27 Aligned_cols=150 Identities=14% Similarity=0.244 Sum_probs=107.4
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccc-hhhhhhhhcCCCCccCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI-SAATRYAALGAPTLYDHP 87 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 87 (234)
+|||||+|.+.++|++|+. ++..|.|++|.|.++................ ....+. ....+.....
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~-------- 109 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG---LTKDYGNSPLHRFKKPG-------- 109 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSS---CEEESSCCCTTSSSSCC--------
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCcccc---ccccccCCchhhccCcc--------
Confidence 8999999999999999994 7889999999999987654221110000000 000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccC
Q 026724 88 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEIC 164 (234)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~ 164 (234)
.........+.++|||+|||..+++++|+++|++|| .|..|.+++. .+|+|||+|.+.++|.+|+ +++..+.
T Consensus 110 ---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 110 ---SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp ---CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred ---ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 000011134679999999999999999999999999 9999999743 4799999999999999998 4788999
Q ss_pred -CeEeEEEeCCCC
Q 026724 165 -GQQVAIDSATPL 176 (234)
Q Consensus 165 -g~~i~v~~a~~~ 176 (234)
|+.|+|.|++++
T Consensus 185 ~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 185 ENHHLRVSFSKST 197 (198)
T ss_dssp SCCSCCEEEECCC
T ss_pred CCCeEEEEeeccc
Confidence 999999999874
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=1.1e-22 Score=166.33 Aligned_cols=117 Identities=17% Similarity=0.326 Sum_probs=105.2
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
++++|||||+|.+.++|++|+. ++..|.|++|.|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------------------------------------- 93 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------------------------------------- 93 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------------------------
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------------------------
Confidence 6789999999999999999994 7889999999998742
Q ss_pred CCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcC
Q 026724 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRS 160 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~ 160 (234)
...+|||+|||+++++++|+++|++||.|..+.++ +.++ ++|||||+|.+.++|.+|+ +++
T Consensus 94 --------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 94 --------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp --------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 24689999999999999999999999999999888 4466 8999999999999999998 478
Q ss_pred CccCCeEeEEEeCCCCCC
Q 026724 161 HEICGQQVAIDSATPLDD 178 (234)
Q Consensus 161 ~~~~g~~i~v~~a~~~~~ 178 (234)
..+.|+.|.|.++.++..
T Consensus 160 ~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CEETTEECEEEECCGGGC
T ss_pred CEeCCcEEEEEECCCCCC
Confidence 899999999999987654
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.89 E-value=8.1e-23 Score=167.73 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=102.3
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
++|+.+ ++|||||+|.+.++|++||+ ++..|.|++|.|.++.
T Consensus 74 ~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~----------------------------------- 116 (292)
T 2ghp_A 74 ADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT----------------------------------- 116 (292)
T ss_dssp EECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC-----------------------------------
T ss_pred EECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC-----------------------------------
Confidence 345543 68999999999999999994 6789999999998652
Q ss_pred CCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEeec-CCC-CcceEEEEEcChHHHHHHH
Q 026724 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPK-RTG-HRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~-~~~-~~g~afV~f~~~~~a~~A~ 157 (234)
.++|||+|||+.+++++|+++|++|| .|..|.++. ..+ ++|||||+|.+.++|.+|+
T Consensus 117 --------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 117 --------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp --------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHH
T ss_pred --------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHH
Confidence 46899999999999999999999999 999999983 335 8999999999999999998
Q ss_pred --hcCCccCCeEeEEEeCCCCCCC
Q 026724 158 --RRSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 158 --~~~~~~~g~~i~v~~a~~~~~~ 179 (234)
+++..|.|+.|.|.++.++...
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC---
T ss_pred HHhCCCEeCCcEEEEEECCCCccc
Confidence 4788999999999999877644
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=9.5e-23 Score=164.92 Aligned_cols=118 Identities=28% Similarity=0.381 Sum_probs=103.0
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCccC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (234)
.++||||||+|.+.++|++|+. ++..|.|+.|.|.++.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------------------------------- 95 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--------------------------------------- 95 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---------------------------------------
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---------------------------------------
Confidence 4679999999999999999994 78899999999998752
Q ss_pred CCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHhc---C
Q 026724 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSRR---S 160 (234)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~~---~ 160 (234)
..+|||+|||+.+|+++|+++|++||.|..|.|+ ..++ ++|||||+|.+.++|.+|+.. +
T Consensus 96 ---------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 96 ---------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp ---------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred ---------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 4589999999999999999999999999999988 5566 899999999999999999843 3
Q ss_pred CccC---CeEeEEEeCCCCCCC
Q 026724 161 HEIC---GQQVAIDSATPLDDA 179 (234)
Q Consensus 161 ~~~~---g~~i~v~~a~~~~~~ 179 (234)
..+. +++|.|.++.+....
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp CEESSSSCCBCEEEECCCEESS
T ss_pred eEEecCCCceEEEeeccccCcc
Confidence 3333 999999999876543
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=133.84 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++|+++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|++|+ +++..|.|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999998 4567 8999999999999999998 478899999999999
Q ss_pred CCC
Q 026724 173 ATP 175 (234)
Q Consensus 173 a~~ 175 (234)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 986
No 24
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=4e-21 Score=143.65 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=74.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++|+++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++||. +++.|.|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998 4456 89999999999999999984 78899999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+.+.....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 99866543
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=129.06 Aligned_cols=84 Identities=35% Similarity=0.679 Sum_probs=76.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. +++.|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5578999999999999999999999999999999998 3466 89999999999999999994 788999999999999
Q ss_pred CCCCCCCC
Q 026724 174 TPLDDAGP 181 (234)
Q Consensus 174 ~~~~~~~~ 181 (234)
.++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98876554
No 26
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=129.02 Aligned_cols=83 Identities=33% Similarity=0.502 Sum_probs=76.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||.+++.|+|+.|.|.++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 5567899999999999999999999999999999998 3456 899999999999999999998889999999999999
Q ss_pred CCCCCC
Q 026724 175 PLDDAG 180 (234)
Q Consensus 175 ~~~~~~ 180 (234)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2cqg_A 92 SKQSQD 97 (103)
T ss_dssp TTCCCC
T ss_pred CCCcCC
Confidence 887654
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=128.73 Aligned_cols=85 Identities=27% Similarity=0.421 Sum_probs=75.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEE
Q 026724 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 171 (234)
Q Consensus 97 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~ 171 (234)
.....++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++||. +++.|+|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999998 4456 89999999999999999984 7889999999999
Q ss_pred eCCCCCCCCC
Q 026724 172 SATPLDDAGP 181 (234)
Q Consensus 172 ~a~~~~~~~~ 181 (234)
++++......
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2dnm_A 89 VARYGRRDLS 98 (103)
T ss_dssp ECSSCCSCCC
T ss_pred ECCcCCCCCC
Confidence 9998765543
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6e-20 Score=126.68 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++|+ ++++.|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998 3366 8999999999999999998 467799999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++.....
T Consensus 85 a~~~~~~~~ 93 (99)
T 1whw_A 85 STIKKEASQ 93 (99)
T ss_dssp CCCCSTTCC
T ss_pred cCCCccccc
Confidence 998876543
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=8.3e-21 Score=129.05 Aligned_cols=79 Identities=32% Similarity=0.485 Sum_probs=70.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhc---CCccCCeEeEEEeC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRR---SHEICGQQVAIDSA 173 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~---~~~~~g~~i~v~~a 173 (234)
+++|||+|||+++|+++|+++|++|| .|.+|+|+ +.++ ++|||||+|.+.++|++||.. ...+.|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999998 4567 999999999999999999853 34799999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.9e-20 Score=132.86 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~ 176 (234)
...+|||+|||+++|+++|+++|++||.|.+|+|+.+.+ ++|||||+|.+.++|++|| ++++.|+|+.|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 356899999999999999999999999999999995556 8999999999999999998 4788999999999999887
Q ss_pred CCCC
Q 026724 177 DDAG 180 (234)
Q Consensus 177 ~~~~ 180 (234)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 6544
No 31
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=9.8e-21 Score=163.16 Aligned_cols=82 Identities=28% Similarity=0.464 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
.+.++|||+|||+.+|+++|+++|++||.|+.|.|+ +.++ ++|||||+|.+.++|.+|| +++..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999998 4467 8999999999999999998 4788999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.++....
T Consensus 180 ~~~~~~~ 186 (437)
T 3pgw_S 180 RGRTVKG 186 (437)
T ss_pred CCCCCCC
Confidence 9876543
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.1e-20 Score=125.32 Aligned_cols=82 Identities=29% Similarity=0.537 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
...++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++|+. +++.|.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 357899999999999999999999999999999998 3456 89999999999999999984 788999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 9877654
No 33
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=125.85 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+.. +++||||+|.+.++|++|+ +++..|.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 55679999999999999999999999999999999996555 8999999999999999998 47789999999999999
Q ss_pred CCCCCCC
Q 026724 175 PLDDAGP 181 (234)
Q Consensus 175 ~~~~~~~ 181 (234)
++.....
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqi_A 92 TPSSQKS 98 (103)
T ss_dssp CTTCCCC
T ss_pred CCccccc
Confidence 8765543
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=127.42 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=76.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+++ +++||||+|.+.++|++||. ++..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 55788999999999999999999999999999999995577 89999999999999999984 7889999999999999
Q ss_pred CCCCCCC
Q 026724 175 PLDDAGP 181 (234)
Q Consensus 175 ~~~~~~~ 181 (234)
++..+..
T Consensus 92 ~~~~~~~ 98 (103)
T 2d9p_A 92 RKEERQS 98 (103)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8876654
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-19 Score=125.09 Aligned_cols=84 Identities=31% Similarity=0.539 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+.. +++||||+|.+.++|++|+. +++.|+|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 56689999999999999999999999999999999995555 89999999999999999984 7889999999999999
Q ss_pred CCCCCCC
Q 026724 175 PLDDAGP 181 (234)
Q Consensus 175 ~~~~~~~ 181 (234)
++.....
T Consensus 92 ~~~~~~~ 98 (103)
T 2cq3_A 92 ARVMTNS 98 (103)
T ss_dssp SSCCCCC
T ss_pred cCCCCCC
Confidence 8876543
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=126.76 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=75.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+. +++.|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5567899999999999999999999999999999998 3466 89999999999999999984 77899999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (105)
T 1x5u_A 92 ASAHNKNLS 100 (105)
T ss_dssp TTTTSCCCC
T ss_pred CCCCCcCCC
Confidence 998776543
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=126.53 Aligned_cols=84 Identities=32% Similarity=0.582 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecC---CC-CcceEEEEEcChHHHHHHH--h-cCCccCCeEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---TG-HRGFGFVTFAEEVVADRVS--R-RSHEICGQQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~---~~-~~g~afV~f~~~~~a~~A~--~-~~~~~~g~~i~v 170 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++ +++||||+|.+.++|++|| + +++.|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 557899999999999999999999999999999999854 66 8999999999999999998 4 678999999999
Q ss_pred EeCCCCCCCCC
Q 026724 171 DSATPLDDAGP 181 (234)
Q Consensus 171 ~~a~~~~~~~~ 181 (234)
.++.++.....
T Consensus 92 ~~a~~~~~~~~ 102 (107)
T 2cph_A 92 EWADSEVTVQS 102 (107)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998876543
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=127.41 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. +++.|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5567899999999999999999999999999999998 3466 89999999999999999984 77899999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++....+
T Consensus 92 a~~~~~~~~ 100 (103)
T 2cq0_A 92 AKPSTNSGP 100 (103)
T ss_dssp SSCCCCSCC
T ss_pred CCCCCCCCC
Confidence 998876554
No 39
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=127.79 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--c--CCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--R--SHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~--~~~~~g~~i~v~~a 173 (234)
..+.++|||+|||+++|+++|+++|++||.|++|.|+++ ||||||+|++.++|++|+. + +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456899999999999999999999999999999999864 8999999999999999985 3 36899999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8876554
No 40
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-19 Score=126.33 Aligned_cols=83 Identities=24% Similarity=0.456 Sum_probs=73.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.|..+..+++||||+|.+.++|++|| +++..|+|+.|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 556789999999999999999999999999999999744337999999999999999998 477899999999999988
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+....
T Consensus 99 ~~~~~ 103 (109)
T 1x4a_A 99 GRGTG 103 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 41
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-19 Score=126.23 Aligned_cols=82 Identities=37% Similarity=0.601 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhc-CCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++||.. ...|.|+.|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 5678999999999999999999999999999999998 4466 999999999999999999953 23899999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.++...
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 876543
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=126.01 Aligned_cols=82 Identities=21% Similarity=0.409 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCC-C-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT-G-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~-~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++|| |..|.|+ +.+ + ++|||||+|.+.++|++|| ++++.|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999 9999998 334 6 8999999999999999999 467799999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+.++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887654
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.2e-20 Score=126.70 Aligned_cols=84 Identities=32% Similarity=0.512 Sum_probs=75.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++|+ +++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5568899999999999999999999999999999998 3466 8999999999999999998 478899999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 998776543
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.5e-20 Score=125.44 Aligned_cols=83 Identities=28% Similarity=0.470 Sum_probs=74.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEE-Eee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
.+.++|||+|||+++++++|+++|++||.|..| .|+ +.++ +++||||+|.+.++|++|+. +++.|.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 888 3566 89999999999999999984 77799999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++.....
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998776543
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=128.73 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
.+.++|||+|||+++++++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|++|| +++..|+|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999998 4567 9999999999999999998 4788999999999999
Q ss_pred CCCCC
Q 026724 174 TPLDD 178 (234)
Q Consensus 174 ~~~~~ 178 (234)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 46
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=2.8e-20 Score=135.68 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=74.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. ++..|.|+.|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999998 3466 99999999999999999994 77899999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
++++....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 99876544
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-19 Score=130.75 Aligned_cols=83 Identities=23% Similarity=0.430 Sum_probs=75.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|+.||.|.+|.|+ +.++ ++|||||+|.+.++|.+||. ++..|.|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5567899999999999999999999999999999998 4567 89999999999999999984 67799999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+.++..+.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876553
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.6e-20 Score=126.59 Aligned_cols=84 Identities=29% Similarity=0.488 Sum_probs=75.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++|+ ++++.|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567899999999999999999999999999999998 3556 8999999999999999998 478899999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876554
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=4.1e-19 Score=125.86 Aligned_cols=84 Identities=35% Similarity=0.501 Sum_probs=75.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec--CCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+. .++ ++|||||+|.+.++|++||. +++.|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 55688999999999999999999999999999999983 466 89999999999999999984 77899999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 998876543
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.5e-19 Score=128.20 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++||. ++..|.|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999998 3456 89999999999999999983 78899999999999
Q ss_pred CCCCCCCCC
Q 026724 173 ATPLDDAGP 181 (234)
Q Consensus 173 a~~~~~~~~ 181 (234)
++++....+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876554
No 51
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2e-19 Score=124.96 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a 173 (234)
..+.++|||+|||+++++++|+++|++|| |..|.|+ +.++ ++|||||+|.+.++|++|| +++..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 55678999999999999999999999997 9999998 4456 8999999999999999999 4677999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876554
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.8e-19 Score=125.90 Aligned_cols=84 Identities=25% Similarity=0.403 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--c------CCccCCe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--R------SHEICGQ 166 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~------~~~~~g~ 166 (234)
..+.++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. + ++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 5567899999999999999999999999999999998 4456 89999999999999999984 5 7899999
Q ss_pred EeEEEeCCCCCCCCC
Q 026724 167 QVAIDSATPLDDAGP 181 (234)
Q Consensus 167 ~i~v~~a~~~~~~~~ 181 (234)
.|+|.++.++.....
T Consensus 92 ~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 92 QLKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEEECCCCCCCCCC
T ss_pred EEEEEECCCCccCCC
Confidence 999999998876543
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=2.2e-19 Score=125.16 Aligned_cols=84 Identities=26% Similarity=0.443 Sum_probs=75.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCC---eEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICG---QQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g---~~i~v 170 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ +++||||+|.+.++|++||. ++..+.+ +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 4568999999999999999999999999999999998 3356 89999999999999999984 7778888 99999
Q ss_pred EeCCCCCCCCC
Q 026724 171 DSATPLDDAGP 181 (234)
Q Consensus 171 ~~a~~~~~~~~ 181 (234)
.++.++.++.+
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998877654
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=127.26 Aligned_cols=82 Identities=26% Similarity=0.479 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ ++|||||+|.+.++|++|+. ++..|.|+.|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3457899999999999999999999999999999998 3366 99999999999999999984 778999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=9.8e-20 Score=123.86 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=75.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+++ +++||||+|.+.++|++|+. ++..|.|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45678999999999999999999999999999999997677 89999999999999999984 7889999999999999
Q ss_pred CCCCC
Q 026724 175 PLDDA 179 (234)
Q Consensus 175 ~~~~~ 179 (234)
+....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=124.02 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ +++||||+|.+.++|++|+. ++..|.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999999998 3356 89999999999999999983 778999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.++..+
T Consensus 94 ~~~~~~ 99 (100)
T 2do4_A 94 NSGPSS 99 (100)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 987653
No 57
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=127.83 Aligned_cols=84 Identities=35% Similarity=0.563 Sum_probs=75.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. +++.|+|+.|+|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 5668999999999999999999999999999999998 3566 89999999999999999985 777999999999999
Q ss_pred CCCCCCCC
Q 026724 174 TPLDDAGP 181 (234)
Q Consensus 174 ~~~~~~~~ 181 (234)
.++.....
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98876543
No 58
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=9.8e-21 Score=150.02 Aligned_cols=77 Identities=22% Similarity=0.398 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..++|||+||++++|+++|+++|++|| .|++|.|+ +.++ ++|||||+|.+.++|++||. +++.|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999998 4577 99999999999999999994 67899999999999
Q ss_pred CCCC
Q 026724 173 ATPL 176 (234)
Q Consensus 173 a~~~ 176 (234)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=125.33 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=68.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCc--eeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCC----ccCCe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSH----EICGQ 166 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~----~~~g~ 166 (234)
.....+|||+|||+++|+++|+++|++||. |.+|+|+ +.++ ++|||||+|.+.++|++||. ++. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999995 5688888 4567 99999999999999999984 443 59999
Q ss_pred EeEEEeCCC
Q 026724 167 QVAIDSATP 175 (234)
Q Consensus 167 ~i~v~~a~~ 175 (234)
+|.|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=124.43 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cC---CC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEE
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KR---TG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAI 170 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~---~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v 170 (234)
.+.++|||+|||+++++++|+++|++||.|..|.|+ +. ++ +++||||+|.+.++|++|+. +++.|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 357899999999999999999999999999999988 33 55 88999999999999999984 778999999999
Q ss_pred EeCCCCCCCCC
Q 026724 171 DSATPLDDAGP 181 (234)
Q Consensus 171 ~~a~~~~~~~~ 181 (234)
+++.++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998765543
No 61
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=2.2e-19 Score=125.36 Aligned_cols=83 Identities=25% Similarity=0.537 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCcc---CCeEeE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEI---CGQQVA 169 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~---~g~~i~ 169 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+ +++..+ .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 5567899999999999999999999999999999998 4456 8999999999999999998 466666 889999
Q ss_pred EEeCCCCCCCC
Q 026724 170 IDSATPLDDAG 180 (234)
Q Consensus 170 v~~a~~~~~~~ 180 (234)
|.++.++....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99999877654
No 62
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=6.3e-19 Score=122.46 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~ 175 (234)
..+.++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++||. +++.|.|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4567899999999999999999999999999999985 5799999999999999984 78899999999999998
Q ss_pred CCCCCC
Q 026724 176 LDDAGP 181 (234)
Q Consensus 176 ~~~~~~ 181 (234)
+.....
T Consensus 83 ~~~~~~ 88 (103)
T 2dgu_A 83 PDQKRK 88 (103)
T ss_dssp CCCCCC
T ss_pred Ccccch
Confidence 776543
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.1e-19 Score=122.25 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh----cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR----RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~i~v~~a 173 (234)
..++++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|+. +...|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 456789999999999999999999999999999988864 8999999999999999985 345799999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 9876544
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=122.59 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCC--ccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSH--EICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~--~~~g~~i~v~~a 173 (234)
..++++|||+|||+++|+++|+++|++||.|.+|.+++ .||||||+|++.++|.+|+. ++. .|.|++|.|.++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 45788999999999999999999999999999999986 37999999999999999985 444 488999999999
Q ss_pred CCCC
Q 026724 174 TPLD 177 (234)
Q Consensus 174 ~~~~ 177 (234)
++++
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8764
No 65
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=124.31 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cC--CccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RS--HEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~--~~~~g~~i~v~~ 172 (234)
..++++|||+|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|++.++|.+|+. ++ ..|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 34678999999999 9999999999999999999999864 6899999999999999985 43 369999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+++...-.
T Consensus 89 a~~~~~~~ 96 (102)
T 1x4d_A 89 SQKYKRIK 96 (102)
T ss_dssp ECCCTTSS
T ss_pred CCCCCCCC
Confidence 98765443
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-19 Score=122.63 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCC-----eEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICG-----QQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g-----~~i~v 170 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||. ++..|.| +.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 456889999999999999999999999999999999854 899999999999999984 6778999 99999
Q ss_pred EeCCCCCCC
Q 026724 171 DSATPLDDA 179 (234)
Q Consensus 171 ~~a~~~~~~ 179 (234)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (108)
T 1x4c_A 88 KVDGPRSPS 96 (108)
T ss_dssp EESSCCSCC
T ss_pred EeCCCCCCC
Confidence 999986654
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.3e-19 Score=119.64 Aligned_cols=76 Identities=32% Similarity=0.520 Sum_probs=70.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~~ 176 (234)
.+|||+|||+++++++|+++|++||.|.+|.++ +.++ ++|||||+|.+.++|++|+. ++..+.|+.|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999998 3466 89999999999999999984 788999999999999987
Q ss_pred C
Q 026724 177 D 177 (234)
Q Consensus 177 ~ 177 (234)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 68
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=121.37 Aligned_cols=78 Identities=32% Similarity=0.475 Sum_probs=69.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
.+.++|||+|||+++++++|+++|++||.|.+|.++ +.++ ++|||||+|.+.++|++|+. ++..+.|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 357899999999999999999999999999999998 3466 89999999999999999984 788999999999999
Q ss_pred CCC
Q 026724 174 TPL 176 (234)
Q Consensus 174 ~~~ 176 (234)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 69
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=125.09 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=74.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCcee--------EEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEIC 164 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~ 164 (234)
....++|||+|||+++++++|+++|++||.|. .|.|+ +.++ ++|||||+|.+.++|++||. +++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 55689999999999999999999999999998 58888 3567 89999999999999999984 788999
Q ss_pred CeEeEEEeCCCCCCCC
Q 026724 165 GQQVAIDSATPLDDAG 180 (234)
Q Consensus 165 g~~i~v~~a~~~~~~~ 180 (234)
|+.|+|.+++++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999877654
No 70
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=126.82 Aligned_cols=83 Identities=35% Similarity=0.604 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 174 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~ 174 (234)
...++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. +++.|+|+.|+|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 345899999999999999999999999999999998 4556 89999999999999999995 6679999999999999
Q ss_pred CCCCCCC
Q 026724 175 PLDDAGP 181 (234)
Q Consensus 175 ~~~~~~~ 181 (234)
++.....
T Consensus 105 ~~~~~~~ 111 (116)
T 1x4b_A 105 AREESGS 111 (116)
T ss_dssp SCCCCCC
T ss_pred CCccCCC
Confidence 8876543
No 71
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=122.71 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE-EEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|.. |.|+ ..++ ++|||||+|.+.++|++||. +++.|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 456789999999999999999999999999987 7777 5466 89999999999999999995 677999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.+++-.
T Consensus 92 ~~~~~~ 97 (104)
T 1wg5_A 92 SRAEVR 97 (104)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 876543
No 72
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=120.80 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=70.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++||.|..|.|+ +.++ +++||||+|.+.++|++|+. ++..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 5567899999999999999999999999999999998 4456 89999999999999999984 77899999999999
Q ss_pred CC
Q 026724 173 AT 174 (234)
Q Consensus 173 a~ 174 (234)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=123.91 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCc-cCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHE-ICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~-~~g~~i~v~ 171 (234)
..+.++|||+|||+++++++|+++|++ ||.|..|.|+ ..++ ++|||||+|.+.++|.+||. ++.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 9999999998 3366 89999999999999999985 6667 999999999
Q ss_pred eCCCCCCCCC
Q 026724 172 SATPLDDAGP 181 (234)
Q Consensus 172 ~a~~~~~~~~ 181 (234)
++.++.....
T Consensus 86 ~a~~~~~~~~ 95 (104)
T 2dhg_A 86 VAIPKASRVK 95 (104)
T ss_dssp BCCCCCSCCC
T ss_pred EccCCCcCCC
Confidence 9988766543
No 74
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2e-19 Score=129.53 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++|+++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|| +++..|.|+.|.|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4567899999999999999999999999999999998 3466 8999999999999999998 478899999999999
Q ss_pred CCCCCCC
Q 026724 173 ATPLDDA 179 (234)
Q Consensus 173 a~~~~~~ 179 (234)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877654
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.8e-19 Score=135.89 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=72.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+.+++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|.+|| +++..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999998 4567 8999999999999999998 478899999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
+.++....
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 98876544
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-18 Score=122.11 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=73.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ +++||||+|.+.++|++||. +++.|+|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4567899999999999999999999999999999998 3456 89999999999999999984 788999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.+.....
T Consensus 92 ~~~~~~~ 98 (114)
T 2do0_A 92 ERALPKG 98 (114)
T ss_dssp SCCCCCS
T ss_pred ccCCCCC
Confidence 8655443
No 77
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8.1e-19 Score=119.36 Aligned_cols=79 Identities=18% Similarity=0.358 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|+ ++++.|.|+.|+|+++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 5567899999999999999999999999999999996 569999999999999998 478899999999999998
Q ss_pred CCCCCC
Q 026724 176 LDDAGP 181 (234)
Q Consensus 176 ~~~~~~ 181 (234)
+....+
T Consensus 82 ~~~~~~ 87 (92)
T 2dgt_A 82 RLRTAS 87 (92)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 766543
No 78
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.8e-19 Score=119.71 Aligned_cols=76 Identities=32% Similarity=0.688 Sum_probs=69.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+. +++.|+|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4567899999999999999999999999999999998 4556 89999999999999999994 567899999999986
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.9e-19 Score=118.91 Aligned_cols=78 Identities=23% Similarity=0.541 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|+ +++..|+|+.|+|+++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4567899999999999999999999999999999996 689999999999999998 477799999999999998
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+....
T Consensus 80 ~~~~~ 84 (90)
T 2dnq_A 80 KSKAS 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-19 Score=120.53 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~ 171 (234)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.+...++||||+|.+.++|++|+ +++..|.|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999 99999999999999833223899999999999999998 47789999999999
Q ss_pred eCCCCCCC
Q 026724 172 SATPLDDA 179 (234)
Q Consensus 172 ~a~~~~~~ 179 (234)
++++....
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99877654
No 81
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-18 Score=120.26 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=70.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cC--CccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RS--HEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~--~~~~g~~i~v~~a 173 (234)
..++++|||+|||+++++++|+++|++||.|.+|.|++. |+||||+|++.++|.+|+. ++ ..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456789999999999999999999999999999998864 7999999999999999985 33 4699999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
+++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 8876543
No 82
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=5.2e-19 Score=121.31 Aligned_cols=78 Identities=15% Similarity=0.368 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
+++|||+|||+++++++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|++|+ +++..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6799999999999999999999999999999998 3456 8999999999999999998 478899999999999998
Q ss_pred CCC
Q 026724 176 LDD 178 (234)
Q Consensus 176 ~~~ 178 (234)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 753
No 83
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=123.86 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++|+++|+++|++||.+ .|.|+ ..++ ++|||||+|.+.++|++|| ++.+.|.++.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 4567899999999999999999999999955 88888 4466 9999999999999999999 46779999999999988
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 84
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=5.9e-19 Score=118.16 Aligned_cols=77 Identities=30% Similarity=0.508 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++||.|..|.++ +.++ +++||||+|.+.++|.+|+ +++..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998 4666 8999999999999999998 478899999999999
Q ss_pred CC
Q 026724 173 AT 174 (234)
Q Consensus 173 a~ 174 (234)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 85
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=124.79 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+ ++++.|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4557899999999999999999999999999999998 4556 8999999999999999998 478899999999999
Q ss_pred CCCCCC
Q 026724 173 ATPLDD 178 (234)
Q Consensus 173 a~~~~~ 178 (234)
+.++.+
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987654
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=124.77 Aligned_cols=79 Identities=33% Similarity=0.587 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||.++++++|+++|++||.|..|.|+.+.+ ++|||||+|.+.++|++|+. ++..|+|+.|+|+++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 55788999999999999999999999999999999985555 89999999999999999984 7889999999999998
Q ss_pred CC
Q 026724 175 PL 176 (234)
Q Consensus 175 ~~ 176 (234)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 87
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=3.8e-19 Score=125.03 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+ +++..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998 4566 8999999999999999998 478899999999999
Q ss_pred CCCCCCC
Q 026724 173 ATPLDDA 179 (234)
Q Consensus 173 a~~~~~~ 179 (234)
+.++.++
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9887643
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=7.4e-19 Score=123.38 Aligned_cols=82 Identities=35% Similarity=0.585 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. .++.|+|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4567899999999999999999999999999999998 4457 99999999999999999995 347999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987654
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=122.64 Aligned_cols=80 Identities=28% Similarity=0.510 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+.+++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+ +++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 5567899999999999999999999999999999998 4567 8999999999999999998 478899999999999
Q ss_pred CCCCC
Q 026724 173 ATPLD 177 (234)
Q Consensus 173 a~~~~ 177 (234)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98875
No 90
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=1.1e-18 Score=117.80 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~~~ 176 (234)
.++|||+|||+++++++|+++|++||.|..|.++ +.++ ++|||||+|.+.++|++|+ ++++.+.|+.|+|.++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 5799999999999999999999999999999998 3466 8999999999999999998 4678999999999999875
Q ss_pred C
Q 026724 177 D 177 (234)
Q Consensus 177 ~ 177 (234)
.
T Consensus 86 ~ 86 (89)
T 3ucg_A 86 R 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=5.2e-19 Score=127.85 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++||. ++..|+|+.|.|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5567899999999999999999999999999999998 4556 89999999999999999984 78899999999999
Q ss_pred CCCCCC
Q 026724 173 ATPLDD 178 (234)
Q Consensus 173 a~~~~~ 178 (234)
+.++.+
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 998764
No 92
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.3e-19 Score=123.99 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--c--CCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--R--SHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~--~~~~~g~~i~v~~a 173 (234)
..++++|||+|||+++++++|+++|++||.|++|.|+++ +|||||+|++.++|.+|+. + +..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 456789999999999999999999999999999999864 7999999999999999985 3 35899999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
+++....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 9877554
No 93
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=118.67 Aligned_cols=80 Identities=11% Similarity=0.249 Sum_probs=72.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++| .|..|.|+ ..++ ++|||||+|.+.++|++||. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4567899999999999999999999999 99999998 4456 89999999999999999995 6679999999999998
Q ss_pred CCCC
Q 026724 175 PLDD 178 (234)
Q Consensus 175 ~~~~ 178 (234)
++..
T Consensus 86 ~~~~ 89 (91)
T 2dgw_A 86 SGPS 89 (91)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 94
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=9.8e-20 Score=123.46 Aligned_cols=79 Identities=23% Similarity=0.424 Sum_probs=65.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
.+|||+|||+++++++|+++|++|| .|.+|.|+ +.++ ++|||||+|.+.++|++|+ +++..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999988 4577 9999999999999999998 57889999999999999
Q ss_pred CCCCCC
Q 026724 175 PLDDAG 180 (234)
Q Consensus 175 ~~~~~~ 180 (234)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 95
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=119.97 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++++++|+++|++||.|..|.++ +.++ +++||||+|.+.++|++|+. ++..|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999998 4456 89999999999999999984 77899999999999
Q ss_pred CCC
Q 026724 173 ATP 175 (234)
Q Consensus 173 a~~ 175 (234)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 96
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=119.82 Aligned_cols=80 Identities=35% Similarity=0.682 Sum_probs=71.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCCC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDD 178 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~~ 178 (234)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++|+.....+.++.|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence 35789999999999999999999999999999999854 6899999999999999876666678999999999998876
Q ss_pred CC
Q 026724 179 AG 180 (234)
Q Consensus 179 ~~ 180 (234)
..
T Consensus 81 ~~ 82 (88)
T 1wf0_A 81 SN 82 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=123.59 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=69.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec-CCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~-~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++|+++|+++|++||.|.+|.|+. ..+ ++|||||+|.+.++|.+||. +++.|+|+.|.|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 44568999999999999999999999999999999992 236 99999999999999999994 6789999999999875
Q ss_pred C
Q 026724 175 P 175 (234)
Q Consensus 175 ~ 175 (234)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 98
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.79 E-value=6.3e-19 Score=119.19 Aligned_cols=79 Identities=39% Similarity=0.753 Sum_probs=65.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~~ 177 (234)
..+..+|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|+++....+.+.|+.|.|.++.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCC
Confidence 556889999999999999999999999999999999864 799999999999999965444556789999999999876
Q ss_pred C
Q 026724 178 D 178 (234)
Q Consensus 178 ~ 178 (234)
.
T Consensus 86 ~ 86 (89)
T 3d2w_A 86 N 86 (89)
T ss_dssp -
T ss_pred c
Confidence 4
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-18 Score=118.51 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccC--CeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEIC--GQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~--g~~i~v~~a 173 (234)
..+.++|||+|||+++++++|+++|++||.|..|.++.. ++||||+|.+.++|++|+. ++..|. |+.|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 456789999999999999999999999999999998754 7899999999999999984 778999 999999999
Q ss_pred CCCCC
Q 026724 174 TPLDD 178 (234)
Q Consensus 174 ~~~~~ 178 (234)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=8.3e-19 Score=118.16 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCC-C-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT-G-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~-~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
..++|||+|||+++++++|+++|++||.|..|.|+ +.+ + ++|||||+|.+.++|++|+. ++..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999998 222 3 78999999999999999984 788999999999999
Q ss_pred CCCCC
Q 026724 174 TPLDD 178 (234)
Q Consensus 174 ~~~~~ 178 (234)
.+..+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 101
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=122.35 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--c--CCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--R--SHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~--~~~~~g~~i~v~~ 172 (234)
..++++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|++.++|.+|+. + ...|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 446889999999998 99999999999999999999986 48999999999999999985 3 3469999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
++++....
T Consensus 99 a~~~~~~~ 106 (112)
T 1x4f_A 99 SEKYKKLV 106 (112)
T ss_dssp ECSCSSSS
T ss_pred Cccccccc
Confidence 98776554
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=118.78 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
..+.++|||+|||+++++++|+++|++||.|..|.++++ ++||||+|.+.++|++|+ ++++.|.|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 556789999999999999999999999999999999864 799999999999999998 478899999999999998
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+....
T Consensus 89 ~~~~~ 93 (99)
T 2cpj_A 89 SASLT 93 (99)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 103
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=121.10 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCcee-EEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeE----
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQ---- 167 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~---- 167 (234)
....++|||+|||+++++++|+++|++||.|. .|.|+ +.++ ++|||||+|.+.++|++|+. ++..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 99998 4466 89999999999999999984 677999999
Q ss_pred eEEEeCCCCCC
Q 026724 168 VAIDSATPLDD 178 (234)
Q Consensus 168 i~v~~a~~~~~ 178 (234)
|+|.++.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 104
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=1e-19 Score=132.90 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++|+++|+++|++|| |++|.|+ ..++ ++|||||+|.+.++|++|| ++.+.|.++.|+|..+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34578999999999999999999999999 6689888 3336 9999999999999999999 46779999999999998
Q ss_pred CCCC
Q 026724 175 PLDD 178 (234)
Q Consensus 175 ~~~~ 178 (234)
++..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7653
No 105
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-18 Score=116.99 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=70.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc--CceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++| |.|..|.++ ++||||+|.+.++|++|+ +++..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 5567899999999999999999999999 999999884 689999999999999998 4788999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
+++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2cpd_A 87 KPVDKDS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 106
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=119.88 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=70.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ +++||||+|.+.++|++|+. +++.|.|+.|+|+++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4567899999999999999999999999999999998 3345 89999999999999999984 788999999999998
Q ss_pred CC
Q 026724 174 TP 175 (234)
Q Consensus 174 ~~ 175 (234)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=119.19 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=69.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.| .++ ..++ +++||||+|.+.++|++||. +++.|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 5568999999999999999999999999987 445 3455 89999999999999999984 677999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2fc9_A 89 GPRGSPN 95 (101)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9875543
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.3e-18 Score=115.36 Aligned_cols=72 Identities=10% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
.+..|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|+ +|+..+.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999875 5899999999999999998 57889999999999984
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=127.18 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE--EEee--cCCC-CcceEEEEEcChHHHHHHH--hcCC----ccCCe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSH----EICGQ 166 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~----~~~g~ 166 (234)
....++|||+|||+++|+++|+++|++||.|.. |+|+ +.++ ++|||||+|.+. +|.+|+ +++. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 556789999999999999999999999999976 8888 4467 999999999999 999998 4777 99999
Q ss_pred EeEEEeCCCCCCCC
Q 026724 167 QVAIDSATPLDDAG 180 (234)
Q Consensus 167 ~i~v~~a~~~~~~~ 180 (234)
.|.|+++.++....
T Consensus 99 ~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 99 TINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCEECCCSCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999999875543
No 110
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=115.94 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=70.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|+. ++..|+|+.|+|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4567899999999999999999999999999999996 5699999999999999984 78899999999999998
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+....
T Consensus 81 ~~~~~ 85 (90)
T 2dnp_A 81 GQKKS 85 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 111
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=119.38 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=70.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEIC 164 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~ 164 (234)
....++|||+|||+++++++|+++|++||.|.. |.|+ +.++ ++|||||+|.+.++|++|+ +++..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 567899999999999999999999999999999 8888 4567 8999999999999999998 4788999
Q ss_pred CeEeEEEeCC
Q 026724 165 GQQVAIDSAT 174 (234)
Q Consensus 165 g~~i~v~~a~ 174 (234)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 112
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=120.54 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCC------CHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCe-E
Q 026724 98 QRIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQ-Q 167 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~-~ 167 (234)
....++|||+|||+.+ ++++|+++|++||.|..|.|++.++ ++|||||+|.+.++|.+|+. ++..|.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4457899999999999 7899999999999999999987777 99999999999999999984 77899998 9
Q ss_pred eEEEeCCCCCC
Q 026724 168 VAIDSATPLDD 178 (234)
Q Consensus 168 i~v~~a~~~~~ 178 (234)
|+|.++.....
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999986543
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-18 Score=119.87 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=73.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|+ +++..|.|+.|+|.++++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 446789999999999999999999999999999999864 799999999999999998 478899999999999998
Q ss_pred CCCCCC
Q 026724 176 LDDAGP 181 (234)
Q Consensus 176 ~~~~~~ 181 (234)
+.....
T Consensus 99 ~~~~~~ 104 (109)
T 1x4g_A 99 SPDMTS 104 (109)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 775543
No 114
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-18 Score=119.09 Aligned_cols=83 Identities=27% Similarity=0.443 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEee---cCCC-CcceEEEEEcChHHHHHHHh--c--CCccCCeEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP---KRTG-HRGFGFVTFAEEVVADRVSR--R--SHEICGQQV 168 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~---~~~~-~~g~afV~f~~~~~a~~A~~--~--~~~~~g~~i 168 (234)
....++|||+|||+++++++|+++|++||. |..|.++ +.++ ++|||||+|.+.++|++|+. + ...++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 445789999999999999999999999998 9999887 3455 89999999999999999984 3 378999999
Q ss_pred EEEeCCCCCCCC
Q 026724 169 AIDSATPLDDAG 180 (234)
Q Consensus 169 ~v~~a~~~~~~~ 180 (234)
+|.++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 115
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=6.3e-19 Score=115.24 Aligned_cols=71 Identities=45% Similarity=0.763 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeC
Q 026724 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSA 173 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a 173 (234)
+|||+|||+++++++|+++|++||.|..|.++ +.++ ++|||||+|.+.++|++|+ ++++.++|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999988 3466 8999999999999999998 4778999999999886
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=118.46 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCc-eeEEEeecCCCCcceEEEEEcChHHHHHHH--hcC-CccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRS-HEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~-~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++|+ +++ ..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 456789999999999999999999999999 6656554 4799999999999999998 477 8999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.++..+.
T Consensus 81 ~~~~~~~ 87 (93)
T 2cqh_A 81 VSKKLRS 87 (93)
T ss_dssp CCCCCCC
T ss_pred cCccccC
Confidence 9876554
No 117
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=121.50 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhhcCceeEEEeecC--C---C-CcceEEEEEcChHHHHHHHh--cCCccCCe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKR--T---G-HRGFGFVTFAEEVVADRVSR--RSHEICGQ 166 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~--~---~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 166 (234)
....++|||+|||+++++++|+ ++|++||.|..|.|+.+ + + ++|||||+|.+.++|++||. +++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 99999999999999832 2 2 56999999999999999984 78899999
Q ss_pred EeEEEeCCCCCC
Q 026724 167 QVAIDSATPLDD 178 (234)
Q Consensus 167 ~i~v~~a~~~~~ 178 (234)
.|+|.+|.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998863
No 118
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.2e-19 Score=123.32 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCC-eE
Q 026724 100 IGKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICG-QQ 167 (234)
Q Consensus 100 ~~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g-~~ 167 (234)
.+++|||+|||+ ++++++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|++|| +++..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999998 5567 9999999999999999998 57889999 99
Q ss_pred eEEEeCCCCC
Q 026724 168 VAIDSATPLD 177 (234)
Q Consensus 168 i~v~~a~~~~ 177 (234)
|.|.++.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997653
No 119
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.9e-18 Score=121.96 Aligned_cols=77 Identities=27% Similarity=0.445 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+. ++..|+|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5567899999999999999999999999999999998 4556 89999999999999999984 67899999999999
Q ss_pred CC
Q 026724 173 AT 174 (234)
Q Consensus 173 a~ 174 (234)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 120
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.9e-18 Score=121.47 Aligned_cols=77 Identities=26% Similarity=0.541 Sum_probs=69.2
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||++ +++++|+++|++||.|..|.| +++||||+|.+.++|++|+ +++..|+|+.|+|.++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 335689999999999 999999999999999999999 4799999999999999998 37889999999999998
Q ss_pred CCCCC
Q 026724 175 PLDDA 179 (234)
Q Consensus 175 ~~~~~ 179 (234)
+....
T Consensus 99 ~~~~~ 103 (110)
T 1wf1_A 99 EPKPD 103 (110)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 65543
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=118.08 Aligned_cols=76 Identities=30% Similarity=0.579 Sum_probs=70.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCCCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPLDDA 179 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~~~~~ 179 (234)
++|||+|||+++|+++|+++|++||.|..|.++.+ +++||||+|.+.++|++|+. ++..+.|+.|+|+++.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999865 68999999999999999984 778999999999999987644
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.3e-18 Score=122.14 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC-ceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
.....+|||+|||+++++++|+++|++|| .|..+.|... .++|||||+|.+.++|++|| +++..|+|+.|+|+++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34568999999999999999999999999 8999988621 27899999999999999999 47889999999999997
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
...
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=2.8e-18 Score=123.14 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~~ 175 (234)
..++|||+|||+++++++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|++|| ++++.|.|+.|+|.++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35799999999999999999999999999999998 3567 8999999999999999999 467799999999999987
Q ss_pred CCCC
Q 026724 176 LDDA 179 (234)
Q Consensus 176 ~~~~ 179 (234)
....
T Consensus 115 ~~~~ 118 (124)
T 2jwn_A 115 NMPG 118 (124)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5543
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=123.53 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCce-eEEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++|+++|+++|++||.| ..|.|+ ..++ ++|||||+|.+.++|++||. +++.|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4567899999999999999999999999999 888888 3467 99999999999999999984 677999999999999
Q ss_pred CCCC
Q 026724 174 TPLD 177 (234)
Q Consensus 174 ~~~~ 177 (234)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8765
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=118.49 Aligned_cols=80 Identities=33% Similarity=0.521 Sum_probs=69.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++|+ .|.++ +.++ +++||||+|.+.++|++|| ++++.|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 55688999999999999999999999884 44455 4456 8999999999999999998 478899999999999
Q ss_pred CCCCCCCC
Q 026724 173 ATPLDDAG 180 (234)
Q Consensus 173 a~~~~~~~ 180 (234)
++++.+..
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99877643
No 126
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-19 Score=125.96 Aligned_cols=81 Identities=19% Similarity=0.388 Sum_probs=72.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~ 174 (234)
...++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|| ++++.|.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 346799999999999999999999999999999998 4556 8999999999999999999 46789999999999998
Q ss_pred CCCCC
Q 026724 175 PLDDA 179 (234)
Q Consensus 175 ~~~~~ 179 (234)
++..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76543
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=119.54 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..+.++ +.++ ++|||||+|.+.++|++||. ++..|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456899999999999999999999999999876665 5666 89999999999999999994 67799999999999
Q ss_pred CCCCC
Q 026724 173 ATPLD 177 (234)
Q Consensus 173 a~~~~ 177 (234)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 97643
No 128
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=122.89 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ ++ ++|||||+|.+.++|..|+ +++..|.|++|+|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 4457899999999999999876 6999999999988864 44 8999999999999999998 4788999999999
Q ss_pred EeCCCCCC
Q 026724 171 DSATPLDD 178 (234)
Q Consensus 171 ~~a~~~~~ 178 (234)
.|++++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987653
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.9e-18 Score=119.86 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=70.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
..+.++|||+|||+.+++++|+++|++||.|..|.|+ ..++ +++||||+|.+.++|++|+. ++..|.|+.|+|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 5568899999999999999999999999999999998 3366 89999999999999999984 788999999999998
Q ss_pred C
Q 026724 174 T 174 (234)
Q Consensus 174 ~ 174 (234)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 130
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=119.21 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCce----eEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v 170 (234)
..+.++|||+|||+++|+++|+++|++||.| ..+.+. ++ ++|||||+|.+.++|++||. ++..|.|+.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4467899999999999999999999999998 444444 55 89999999999999999984 778999999999
Q ss_pred EeCCCCCCCCC
Q 026724 171 DSATPLDDAGP 181 (234)
Q Consensus 171 ~~a~~~~~~~~ 181 (234)
.++.++....+
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpx_A 100 EFGKNKKQRSS 110 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998876554
No 131
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=9.2e-19 Score=120.98 Aligned_cols=79 Identities=20% Similarity=0.421 Sum_probs=69.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeec---CCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~---~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++|| |.+|.|+. .++ ++|||||+|.+.++|.+|| +++..|.|+.|+|++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 55679999999999999999999999999 99999983 367 8999999999999999999 467799999999999
Q ss_pred CCCCC
Q 026724 173 ATPLD 177 (234)
Q Consensus 173 a~~~~ 177 (234)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=129.17 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcC--ceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..++|||+|||+++++++|+++|++|| .|.+|.|+ +.++ ++|||||+|.+.++|++||. ++..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999998 4577 99999999999999999984 78899999999999
Q ss_pred CCCC
Q 026724 173 ATPL 176 (234)
Q Consensus 173 a~~~ 176 (234)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 133
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=121.57 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCCC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~~ 175 (234)
....+|||+|||+++|+++|+++|++| .|..|.|+ ...+ ++|||||+|.+.++|++|| ++++.|.|+.|+|..+.+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 345799999999999999999999999 89999998 3346 9999999999999999999 477899999999998875
Q ss_pred CC
Q 026724 176 LD 177 (234)
Q Consensus 176 ~~ 177 (234)
+.
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 134
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.2e-18 Score=113.16 Aligned_cols=74 Identities=24% Similarity=0.431 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh---cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR---RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~---~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|.+++. ++||||+|.+.++|++|+. ++..+.|+.|+|++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 556789999999999999999999999999999999863 7999999999999999984 6679999999999985
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-19 Score=121.83 Aligned_cols=81 Identities=28% Similarity=0.560 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a 173 (234)
...++|||+|||+++++++|+++|++||.|..|.++ +.++ ++|||||+|.+.++|++|+ +++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999988 4567 8999999999999999998 4778999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987643
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=1e-18 Score=114.14 Aligned_cols=71 Identities=35% Similarity=0.681 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
+|||+|||+++++++|+++|++||.|..|.++ +.++ ++|||||+|.+.++|++|+. +++.+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999988 4556 89999999999999999995 677999999999875
No 137
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.7e-18 Score=118.76 Aligned_cols=78 Identities=22% Similarity=0.470 Sum_probs=68.6
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
..+.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++|+. ++..+.|+.|+|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 45688999999999 99999999999999999999994 7999999999999999984 7789999999999998
Q ss_pred CCCCCC
Q 026724 175 PLDDAG 180 (234)
Q Consensus 175 ~~~~~~ 180 (234)
++....
T Consensus 82 ~~~~~~ 87 (96)
T 2kvi_A 82 SNARPQ 87 (96)
T ss_dssp CCCC--
T ss_pred cCCCCC
Confidence 766543
No 138
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=4.6e-18 Score=119.07 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=70.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|++|+ +++..|+|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5578999999999999999999999999999999996 699999999999999998 478899999999999988
Q ss_pred CCCC
Q 026724 176 LDDA 179 (234)
Q Consensus 176 ~~~~ 179 (234)
+..+
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7643
No 139
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-17 Score=118.87 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ ++|||||+|.+.++|++|+. ++..|.|+.|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 5567899999999999999999999999999999998 3366 89999999999999999984 778999999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.+.....
T Consensus 112 ~~~~~~~ 118 (124)
T 2kt5_A 112 ASQIDLE 118 (124)
T ss_dssp CCTTCCC
T ss_pred CCCCCCC
Confidence 8866543
No 140
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=114.79 Aligned_cols=70 Identities=23% Similarity=0.460 Sum_probs=64.0
Q ss_pred CCEEEEeCCCCCC------CHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCe-EeEE
Q 026724 101 GKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQ-QVAI 170 (234)
Q Consensus 101 ~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~-~i~v 170 (234)
+++|||+|||+.+ ++++|+++|++||.|.+|.+++.++ ++|||||+|.+.++|++|+. ++..|.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7899999999999999999987777 99999999999999999994 77899999 8876
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=113.06 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=68.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 176 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~~~ 176 (234)
....++|||+|||+++++++|+++|++||.|.+|.+.+.++. ||||+|.+.++|++||. +++.|+|+.|.|+++.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 345679999999999999999999999999999832243323 99999999999999995 677999999999999876
Q ss_pred CCCC
Q 026724 177 DDAG 180 (234)
Q Consensus 177 ~~~~ 180 (234)
....
T Consensus 83 ~~~~ 86 (94)
T 2e5g_A 83 EFQS 86 (94)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 142
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.6e-18 Score=118.53 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..+.++ +.++ +++||||+|.+.++|++||. +++.|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3346899999999999999999999999999877666 5566 89999999999999999984 78899999999999
Q ss_pred CCC
Q 026724 173 ATP 175 (234)
Q Consensus 173 a~~ 175 (234)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.5e-17 Score=114.24 Aligned_cols=75 Identities=23% Similarity=0.537 Sum_probs=68.7
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+ ++++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|+ +++..+.|+.|+|++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 55689999999998 9999999999999999999999 4799999999999999998 47789999999999998
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
++.
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 144
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=114.83 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=68.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|. +.++.. .+++||||+|.+.++|++|+ +++..|+|+.|.|+++.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 44578999999999999999999999999996 555521 16899999999999999998 478899999999999998
Q ss_pred CCC
Q 026724 176 LDD 178 (234)
Q Consensus 176 ~~~ 178 (234)
+..
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 145
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=116.20 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=67.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
.+.++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+. ++..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999988 4566 89999999999999999984 677899998887765
Q ss_pred C
Q 026724 174 T 174 (234)
Q Consensus 174 ~ 174 (234)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.9e-18 Score=117.46 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|.+|.+.+ +++||||+|.+.++|++|+ +++..|+|+.|+|.++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 34568999999999999999999999999999999984 4899999999999999998 478899999999999987
Q ss_pred C
Q 026724 176 L 176 (234)
Q Consensus 176 ~ 176 (234)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-17 Score=111.75 Aligned_cols=79 Identities=25% Similarity=0.351 Sum_probs=70.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|| ++++++|+++|++||.|..|.|.+ +++||||+|.+.++|++||. ++..|.|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 456789999996 899999999999999999999864 58999999999999999984 67799999999999998
Q ss_pred CCCCCC
Q 026724 176 LDDAGP 181 (234)
Q Consensus 176 ~~~~~~ 181 (234)
+.....
T Consensus 87 ~~~~~~ 92 (97)
T 1x5p_A 87 QPMLDS 92 (97)
T ss_dssp CCCCCS
T ss_pred CCCCCC
Confidence 765543
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-18 Score=113.30 Aligned_cols=73 Identities=37% Similarity=0.627 Sum_probs=65.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhc-CCccCCeEeEEEeCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSAT 174 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~a~ 174 (234)
++|||+|||+++++++|+++|++||.|..|.++ +.++ ++|||||+|.+.++|++|+.. .+.++|+.|.|++|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 479999999999999999999999999999998 3456 899999999999999999842 279999999999873
No 149
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=2.3e-18 Score=122.59 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCc---eeEEEee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~ 171 (234)
....++|||+|||+++|+++|+++|++||. |..|+|+ ...+ ++|||||+|.+.++|++|| ++++.|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 446789999999999999999999999999 8899888 3336 8999999999999999999 47779999999999
Q ss_pred eCCCCC
Q 026724 172 SATPLD 177 (234)
Q Consensus 172 ~a~~~~ 177 (234)
++.+++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 150
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=120.82 Aligned_cols=76 Identities=30% Similarity=0.521 Sum_probs=69.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ +.++ ++|||||+|.+.++|++|+. ++..|.|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5568999999999999999999999999999999998 3566 89999999999999999994 67799999999998
Q ss_pred C
Q 026724 173 A 173 (234)
Q Consensus 173 a 173 (234)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 151
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=1.7e-18 Score=125.96 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCc---eeEEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~ 171 (234)
....++|||+|||+++|+++|+++|++||. |..|.|+ ...+ ++|||||+|.+.++|++||. ++..|+|+.|+|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 456789999999999999999999999999 8889888 3336 89999999999999999994 6779999999999
Q ss_pred eCCCCC
Q 026724 172 SATPLD 177 (234)
Q Consensus 172 ~a~~~~ 177 (234)
++.+++
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987543
No 152
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=1.1e-17 Score=118.50 Aligned_cols=80 Identities=16% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 446789999999999999999999999999999999854337999999999999999998 478899999999999986
Q ss_pred CC
Q 026724 176 LD 177 (234)
Q Consensus 176 ~~ 177 (234)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 153
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-18 Score=120.53 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++++++|+++|++||.|.. .++ ..++ ++|||||+|.+.++|++|| ++++.|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345789999999999999999999999999877 333 4455 8999999999999999999 5777999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987654
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.6e-18 Score=120.11 Aligned_cols=82 Identities=23% Similarity=0.572 Sum_probs=73.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ ++|||||+|.+.++|++|+.+++.++|+.|.|.++.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 3456899999999999999999999999999999998 3366 8999999999999999999988899999999999987
Q ss_pred CCCC
Q 026724 176 LDDA 179 (234)
Q Consensus 176 ~~~~ 179 (234)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 6644
No 155
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=124.78 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEE-ee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY-VP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~-~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++|+++|+++|++||.|..+. +. +.++ ++|||||+|.+.++|++|| ++++.|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45678999999999999999999999999998743 33 5667 8999999999999999999 5777999999999999
Q ss_pred CCCC
Q 026724 174 TPLD 177 (234)
Q Consensus 174 ~~~~ 177 (234)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 156
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-19 Score=128.95 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeE--------EEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEIC 164 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~ 164 (234)
..+.++|||+|||+++++++|+++|++||.|.. |.|+ +.++ ++|||||+|.+.++|++|+. ++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999998 7777 4566 89999999999999999984 778999
Q ss_pred CeEeEEEeCCCCCCC
Q 026724 165 GQQVAIDSATPLDDA 179 (234)
Q Consensus 165 g~~i~v~~a~~~~~~ 179 (234)
|+.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999987654
No 157
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=4.9e-18 Score=116.52 Aligned_cols=80 Identities=29% Similarity=0.477 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
..++++|||+|||+++++++|+ ++|++||.|..|.+++ ++ ++|||||+|.+.++|.+|+ +++..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4567899999999999999999 9999999999999874 34 7899999999999999998 4788999999999
Q ss_pred EeCCCCCC
Q 026724 171 DSATPLDD 178 (234)
Q Consensus 171 ~~a~~~~~ 178 (234)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99998654
No 158
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=116.35 Aligned_cols=79 Identities=16% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH--hcCCcc--------CC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS--RRSHEI--------CG 165 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~--------~g 165 (234)
....++|||+|||+++++++|+++|++||.|..|.|+ ..++ ++|||||+|.+.++|++|+ +++..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4567899999999999999999999999999999998 3366 8999999999999999998 467777 68
Q ss_pred eEeEEEeCCCC
Q 026724 166 QQVAIDSATPL 176 (234)
Q Consensus 166 ~~i~v~~a~~~ 176 (234)
++|.|.|+.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=116.79 Aligned_cols=81 Identities=14% Similarity=0.277 Sum_probs=70.0
Q ss_pred CCCCCEEEE--eCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCcc-----CCeEe
Q 026724 98 QRIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEI-----CGQQV 168 (234)
Q Consensus 98 ~~~~~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~-----~g~~i 168 (234)
..++.+||| +||++++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|+. ++.+| .+++|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 445789999 77999999999999999999999998875 37999999999999999984 67777 68999
Q ss_pred EEEeCCCCCCCCC
Q 026724 169 AIDSATPLDDAGP 181 (234)
Q Consensus 169 ~v~~a~~~~~~~~ 181 (234)
.|.+++..+...+
T Consensus 99 ~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 99 YLNFVEKVQWSGP 111 (114)
T ss_dssp EEEEESCCCCSSC
T ss_pred EEEecccCcccCC
Confidence 9999987665544
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=3.6e-18 Score=122.41 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCcee--EEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~ 172 (234)
.....+|||+|||+++|+++|+++|++| .|. .|.|+ ...+ ++|||||+|.+.++|++||. +...|.|+.|+|..
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 4457899999999999999999999999 566 88888 3336 99999999999999999995 56799999999998
Q ss_pred CCCC
Q 026724 173 ATPL 176 (234)
Q Consensus 173 a~~~ 176 (234)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 161
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=115.80 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=69.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..+ ..++ ++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4467899999999999999999999999988766 4455 89999999999999999985 6779999999999998
Q ss_pred CCCCC
Q 026724 175 PLDDA 179 (234)
Q Consensus 175 ~~~~~ 179 (234)
++...
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=1.1e-17 Score=118.42 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeE-----eEEE
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQ-----VAID 171 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~-----i~v~ 171 (234)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++|| +++..|+|+. |+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999754 99999999999999998 4778999988 7777
Q ss_pred eCCCCC
Q 026724 172 SATPLD 177 (234)
Q Consensus 172 ~a~~~~ 177 (234)
.+.++.
T Consensus 90 ~~~~~~ 95 (115)
T 3beg_B 90 VDGPRS 95 (115)
T ss_dssp ECC---
T ss_pred cCCCCC
Confidence 776644
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=123.59 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=69.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCce----eEEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEE
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAID 171 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~ 171 (234)
....+|||+|||+++|+++|+++|++||.| ..|.|+ ..++ ++|||||+|.+.++|++||. +++.|.++.|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356899999999999999999999999975 578887 4466 89999999999999999995 6779999999999
Q ss_pred eCCCCC
Q 026724 172 SATPLD 177 (234)
Q Consensus 172 ~a~~~~ 177 (234)
.+.+++
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 164
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2e-18 Score=116.88 Aligned_cols=77 Identities=30% Similarity=0.615 Sum_probs=65.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~~~ 176 (234)
++|||+|||+++++++|+++|++||.|.+|.++ +.++ ++|||||+|.+.+ |.+|+. ++..+.|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999998 4456 8999999999999 999984 678999999999999886
Q ss_pred CCC
Q 026724 177 DDA 179 (234)
Q Consensus 177 ~~~ 179 (234)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 165
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=118.50 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~~ 177 (234)
..++|||+|||+++++++|+++|++||.|..|.|++ +++||||+|.+.++|++|+ +++..|.|+.|.|.|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 467999999999999999999999999999999875 4799999999999999998 47889999999999997643
No 166
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=119.22 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCc---eeEEEee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~ 171 (234)
....++|||+|||+++|+++|+++|++||. |..|.|+ ...+ ++|||||+|.+.++|++|| ++++.|.|+.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 456789999999999999999999999998 8899988 2236 9999999999999999999 46779999999999
Q ss_pred eCCCCC
Q 026724 172 SATPLD 177 (234)
Q Consensus 172 ~a~~~~ 177 (234)
++.+++
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 997654
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=117.37 Aligned_cols=78 Identities=26% Similarity=0.452 Sum_probs=67.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCC---C-CcceEEEEEcChHHHHHHHhcCCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT---G-HRGFGFVTFAEEVVADRVSRRSHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~---~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~ 171 (234)
....++|||+|||+++++++|+++|++||.|. +.++ +.+ + ++|||||+|.+.++|++||...+.++|+.|.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 34578999999999999999999999999999 7666 333 5 899999999999999999987778899888887
Q ss_pred eCCCC
Q 026724 172 SATPL 176 (234)
Q Consensus 172 ~a~~~ 176 (234)
.+.+.
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 66543
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=110.21 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=68.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEE-eecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY-VPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.|..|+ |+.+. ..+.|||+|.+.++|.+|+ +++..|.|+.|.|+++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44578999999999999999999999999999995 66332 2344999999999999998 47889999999999999
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 884
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=4.8e-17 Score=120.93 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=68.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCccCC--eEeEEEeCC
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICG--QQVAIDSAT 174 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~g--~~i~v~~a~ 174 (234)
....+|||+||++.+|+++|+++|++||.|++|.|.... +++||||+|.+.++|++|+. ++..|.+ +.|+|+|++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 345679999999999999999999999999999987321 57899999999999999984 7778865 999999999
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 874
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=8.2e-17 Score=115.42 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcce-EEEEEcChHHHHHHH--hcCCccCC--eEeEEEeCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGF-GFVTFAEEVVADRVS--RRSHEICG--QQVAIDSAT 174 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~--~~~~~~~g--~~i~v~~a~ 174 (234)
...+|||+||++.+|+++|+++|++||.|.+|.++.. .++| |||+|.+.++|++|+ +++..|.+ +.|+|+|++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 4467889999999999999999999999999988743 3688 999999999999998 57889988 899999999
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
++.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 864
No 171
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=121.06 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=69.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEE--------EeecCCC-CcceEEEEEcChHHHHHHH--hcCCccCCe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV--------YVPKRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQ 166 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~--------~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~ 166 (234)
..+.++|||+|||+++|+++|+++|++||.|..| .+ ..++ ++|||||+|.+.++|.+|| +++..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4467899999999999999999999999998764 22 2345 8999999999999999998 478899999
Q ss_pred EeEEEeCCCCCCCC
Q 026724 167 QVAIDSATPLDDAG 180 (234)
Q Consensus 167 ~i~v~~a~~~~~~~ 180 (234)
.|.|.++++..++.
T Consensus 121 ~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 121 PMVVQFARSARPKQ 134 (143)
T ss_dssp ECEEEECCCSCC--
T ss_pred EEEEEECCCCCCcc
Confidence 99999998765443
No 172
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=8.1e-17 Score=122.53 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+.+++++|+++|++||.|+.|.|+ ..++ ++|||||+|.+.++|++||. ++..|.|+.|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5567899999999999999999999999999999998 3366 89999999999999999985 778999999999999
Q ss_pred CCCC
Q 026724 174 TPLD 177 (234)
Q Consensus 174 ~~~~ 177 (234)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7653
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=3.6e-16 Score=111.51 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=65.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcce-EEEEEcChHHHHHHH--hcCCccCC--eEeEEEeCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGF-GFVTFAEEVVADRVS--RRSHEICG--QQVAIDSATPL 176 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~--~~~~~~~g--~~i~v~~a~~~ 176 (234)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|..|+ +++..|.| +.|+|.+|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 45789999999999999999999999999998743 386 999999999999998 47889987 69999999987
Q ss_pred C
Q 026724 177 D 177 (234)
Q Consensus 177 ~ 177 (234)
.
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 5
No 174
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=105.95 Aligned_cols=74 Identities=18% Similarity=0.345 Sum_probs=64.2
Q ss_pred CCCCE-EEEeCCCCCCCHHH----HHHHHhhc-CceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 99 RIGKK-IFVGRLPQEATAED----LRRYFSRF-GRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 99 ~~~~~-l~v~nl~~~~~~~~----l~~~f~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
.++.+ |||+|||+.+++++ |+++|++| |+|.+| + .|+|||+|.+.++|.+|+ +++..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----t--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----T--GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----C--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----e--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34555 99999999999988 55899999 599888 2 399999999999999998 4788999999999
Q ss_pred EeCCCCCCC
Q 026724 171 DSATPLDDA 179 (234)
Q Consensus 171 ~~a~~~~~~ 179 (234)
.+|+.+..-
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999987654
No 175
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.5e-16 Score=124.62 Aligned_cols=80 Identities=26% Similarity=0.282 Sum_probs=70.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEe
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 172 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 172 (234)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+ +.++ ++|||||+|.+.++|++||. ++..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3457899999999999999999999999999999998 4566 89999999999999999984 67799999999999
Q ss_pred CCCCC
Q 026724 173 ATPLD 177 (234)
Q Consensus 173 a~~~~ 177 (234)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87654
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.6e-16 Score=122.33 Aligned_cols=82 Identities=35% Similarity=0.547 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a 173 (234)
....++|||+|||+++|+++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|.+||. +++.+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 4567899999999999999999999999999999998 4466 89999999999999999995 677999999999999
Q ss_pred CCCCCC
Q 026724 174 TPLDDA 179 (234)
Q Consensus 174 ~~~~~~ 179 (234)
.++...
T Consensus 90 ~~~~~~ 95 (196)
T 1l3k_A 90 VSREDS 95 (196)
T ss_dssp CC----
T ss_pred cCcccc
Confidence 876543
No 177
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.3e-16 Score=107.52 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~~ 177 (234)
..++|||+|||+++++++|+++|++| .|.+|.+.+ ++|||||+|.+.++|++|+ +++..+.|+.|+|+++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR---NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG---GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC---CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46899999999999999999999999 999998863 6899999999999999998 47789999999999996543
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=1.1e-16 Score=120.17 Aligned_cols=78 Identities=33% Similarity=0.657 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeCCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a~~~ 176 (234)
++++|||+|||+++|+++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|.+|+.+++.++|+.|.|.++.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 36799999999999999999999999999999998 3467 99999999999999999999889999999999998765
Q ss_pred C
Q 026724 177 D 177 (234)
Q Consensus 177 ~ 177 (234)
.
T Consensus 82 ~ 82 (167)
T 2cjk_A 82 D 82 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=4.3e-16 Score=116.98 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
+.++|||+|||+++++++|+++|++||.|.+|.++ +.++ ++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999998 4567 8999999999999999998 47889999999999998
Q ss_pred CCCCC
Q 026724 175 PLDDA 179 (234)
Q Consensus 175 ~~~~~ 179 (234)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76643
No 180
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=2.8e-16 Score=105.41 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=64.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc----C-------ceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCe
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQ 166 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~ 166 (234)
.+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ +++..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 457899999999999999999999999 8 8999988754 799999999999999998 467799999
Q ss_pred EeEEEe
Q 026724 167 QVAIDS 172 (234)
Q Consensus 167 ~i~v~~ 172 (234)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=4.1e-16 Score=121.45 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=69.6
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCC
Q 026724 100 IGKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 100 ~~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~ 176 (234)
++++|||+||| +.+++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|| +++..|.|+.|+|.+++.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 46899999999 89999999999999999999999854 5899999999999999998 5888999999999999754
Q ss_pred C
Q 026724 177 D 177 (234)
Q Consensus 177 ~ 177 (234)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 182
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5.3e-16 Score=116.20 Aligned_cols=78 Identities=26% Similarity=0.449 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
+++|||+|||+++++++|+++|++||.|.+|.++ +.++ ++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999998 3366 8899999999999999998 478899999999999987
Q ss_pred CCC
Q 026724 176 LDD 178 (234)
Q Consensus 176 ~~~ 178 (234)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-16 Score=112.16 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=64.1
Q ss_pred CEEEEeCC----CCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcC----hHH----HHHHHh----cCCc
Q 026724 102 KKIFVGRL----PQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAE----EVV----ADRVSR----RSHE 162 (234)
Q Consensus 102 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~----~~~----a~~A~~----~~~~ 162 (234)
.+|||+|| |+.+++++|+++|++||+|.+|.++ +.|+ ++|||||+|.+ +++ |.+|+. ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999998 8888 99999999996 322 677765 6779
Q ss_pred cCCeEeEEEeCC
Q 026724 163 ICGQQVAIDSAT 174 (234)
Q Consensus 163 ~~g~~i~v~~a~ 174 (234)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=6.6e-16 Score=110.23 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=68.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|| ++++++|+++|++||.|.+|.|.+ ++|||||+|.+.++|++|+ +++..|.|+.|.|.++.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 446789999996 699999999999999999999874 5899999999999999998 478899999999999998
Q ss_pred CCCCC
Q 026724 176 LDDAG 180 (234)
Q Consensus 176 ~~~~~ 180 (234)
+....
T Consensus 111 ~~~~~ 115 (121)
T 2bz2_A 111 QPMLD 115 (121)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 75443
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=9.4e-16 Score=118.23 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHHh-cCCccCCeEeEEEeCCCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 176 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~a~~~ 176 (234)
..++|||+|||+++++++|+++|++||.|..|+|+ ..++ ++|||||+|.+.++|.+|+. ..+.++|+.|.|.++..-
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 35799999999999999999999999999999998 3346 89999999999999999995 456999999999988753
No 186
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-15 Score=113.61 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=69.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPLD 177 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~~ 177 (234)
++|||+|||+++|+++|+++|++||.|.+|.++ ..++ ++|||||+|.+.++|.+|+ +++..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 489999999999999999999999999999998 3334 8999999999999999998 47889999999999998765
Q ss_pred C
Q 026724 178 D 178 (234)
Q Consensus 178 ~ 178 (234)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 187
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=99.87 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcCCccCCeEeEEEeC
Q 026724 101 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSA 173 (234)
Q Consensus 101 ~~~l~v~nl~-------~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~a 173 (234)
..+|-|.-.. .++++++|+++|++||.|.+|.|+.. ++|||||+|.+.++|++||..++.+.+++|+|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~--~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSK--KPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESS--SSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccC--CCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 5567776543 45899999999999999999999832 79999999999999999998888889999999999
Q ss_pred CCCCCCC
Q 026724 174 TPLDDAG 180 (234)
Q Consensus 174 ~~~~~~~ 180 (234)
.++....
T Consensus 88 ~~~~~~~ 94 (100)
T 2d9o_A 88 EGQPQDA 94 (100)
T ss_dssp SCCCCCC
T ss_pred cCCCCCC
Confidence 8876543
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.5e-15 Score=119.97 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=67.7
Q ss_pred CCCCCEEEEeCCCCCC---------CHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCcc---
Q 026724 98 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEI--- 163 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~--- 163 (234)
....++|||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|+ +++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 5578999999999998 7999999999999999999986 3899999999999999998 467777
Q ss_pred ---------CCeEeEEEeCCCCCC
Q 026724 164 ---------CGQQVAIDSATPLDD 178 (234)
Q Consensus 164 ---------~g~~i~v~~a~~~~~ 178 (234)
.|+.|.|+||.+...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=4.7e-15 Score=120.76 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhhcCceeEEEeecCCC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeEE
Q 026724 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVAI 170 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v 170 (234)
..+.++|||+|||+++++++|+ ++|++||.|.+|.|++ ++ ++|||||+|.+.++|.+|| +++..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 5568999999999999999977 8999999999999886 44 8999999999999999998 4778999999999
Q ss_pred EeCCCCC
Q 026724 171 DSATPLD 177 (234)
Q Consensus 171 ~~a~~~~ 177 (234)
.++..+.
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997655
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=4.4e-15 Score=115.99 Aligned_cols=78 Identities=23% Similarity=0.441 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCCC-CcceEEEEEcChHHHHHHHh--cCCccCCeEeEEEeCC
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRTG-HRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 174 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~~-~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~a~ 174 (234)
..++|||+|||+++|+++|+++|++||.|.+|.|+ +.++ ++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999998 3356 89999999999999999984 7889999999999887
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-14 Score=101.57 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCCCCEEEEeCCCCCCC-----------HHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccC
Q 026724 98 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEIC 164 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~ 164 (234)
..++++|+|.||....+ +++|+++|++||.|..|.|.. ..++|||||+|.+.++|++|+ +++..|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~-~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD-RHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEET-TCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEec-CCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 55689999999954432 689999999999999997652 227999999999999999998 4778999
Q ss_pred CeEeEEEeCCCCCCCC
Q 026724 165 GQQVAIDSATPLDDAG 180 (234)
Q Consensus 165 g~~i~v~~a~~~~~~~ 180 (234)
|+.|+|.++.++....
T Consensus 91 gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 91 GRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TEECEEEECCSCCCSS
T ss_pred CcEEEEEEeCCCCCcc
Confidence 9999999998876543
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1.2e-14 Score=100.98 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=67.0
Q ss_pred CCCCCEEEEeCCCC-----CCCHHHHHHHHhhcCceeEEEeecC---CC-CcceEEEEEcChHHHHHHH--hcCCccCCe
Q 026724 98 QRIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKR---TG-HRGFGFVTFAEEVVADRVS--RRSHEICGQ 166 (234)
Q Consensus 98 ~~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~~~~~~~---~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~ 166 (234)
..++++|+|.||.. +.++++|+++|++||.|.+|.|+.+ ++ ++||+||+|.+.++|.+|+ +++..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 2378999999999999999999832 34 8999999999999999998 588899999
Q ss_pred EeEEEeCCC
Q 026724 167 QVAIDSATP 175 (234)
Q Consensus 167 ~i~v~~a~~ 175 (234)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=1e-14 Score=115.43 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~ 174 (234)
..++++|||+|||+ ++++++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|++|+ +++..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~--~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT--TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 45678999999999 9999999999999999999999855 3799999999999999998 47889999999999998
Q ss_pred CCC
Q 026724 175 PLD 177 (234)
Q Consensus 175 ~~~ 177 (234)
++.
T Consensus 109 ~~~ 111 (229)
T 2adc_A 109 HQN 111 (229)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=2.6e-15 Score=113.60 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=70.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee-cCCC-CcceEEEEEcChHHHHHHH-hcCCccCCeEeEEEeCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-KRTG-HRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSAT 174 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~-~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~v~~a~ 174 (234)
....++|||+|||+++++++|+++|++||.+..+.+. ..++ ++|||||+|.+.++|.+|+ +++..|.|+.|.|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 5568899999999999999999999999987663333 3445 8999999999999999999 47779999999999998
Q ss_pred CCCCC
Q 026724 175 PLDDA 179 (234)
Q Consensus 175 ~~~~~ 179 (234)
++...
T Consensus 90 ~~~~~ 94 (175)
T 1fje_B 90 GRDSK 94 (175)
T ss_dssp CSSCS
T ss_pred Ccccc
Confidence 76543
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=111.23 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCCC
Q 026724 100 IGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATPL 176 (234)
Q Consensus 100 ~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~~ 176 (234)
.+++|||+|||+ ++++++|+++|++||.|.+|.++.+ .+|||||+|.+.++|.+|+ +++..+.|+.|.|.++.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 9999999999999999999999855 3799999999999999998 4788999999999999876
Q ss_pred C
Q 026724 177 D 177 (234)
Q Consensus 177 ~ 177 (234)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=3.4e-14 Score=114.59 Aligned_cols=75 Identities=29% Similarity=0.572 Sum_probs=68.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEeCCC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDSATP 175 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~a~~ 175 (234)
....++|||+|||+++|+++|+++|++||.|..|.|.+. +|||||+|.+.++|.+|+ +++..|.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 456789999999999999999999999999999999753 799999999999999998 478899999999999875
No 197
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=2.9e-14 Score=107.51 Aligned_cols=79 Identities=23% Similarity=0.449 Sum_probs=66.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCC---CCcceEEEEEcChHHHHHHHh--cCCccC---CeEeE
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT---GHRGFGFVTFAEEVVADRVSR--RSHEIC---GQQVA 169 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~---~~~g~afV~f~~~~~a~~A~~--~~~~~~---g~~i~ 169 (234)
..++|||+|||+++|+++|+++|++||.|.+|.|+ +.+ .++|||||+|.+.++|++|+. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36799999999999999999999999999999998 333 278999999999999999984 554444 67888
Q ss_pred EEeCCCCCC
Q 026724 170 IDSATPLDD 178 (234)
Q Consensus 170 v~~a~~~~~ 178 (234)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776554
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=5.6e-14 Score=105.78 Aligned_cols=76 Identities=20% Similarity=0.386 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc----C-------ceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeE
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQ 167 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~ 167 (234)
+.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ ++++.+.|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 36799999999999999999999999 6 677777764 4899999999999999998 4678999999
Q ss_pred eEEEeCCCCCC
Q 026724 168 VAIDSATPLDD 178 (234)
Q Consensus 168 i~v~~a~~~~~ 178 (234)
|.|.++.+...
T Consensus 80 i~v~~~~~~~~ 90 (172)
T 2g4b_A 80 LKIRRPHDYQP 90 (172)
T ss_dssp CEEECCSSCCC
T ss_pred eeecCCcccCC
Confidence 99999876543
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=8.6e-14 Score=107.14 Aligned_cols=76 Identities=20% Similarity=0.405 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc----C-------ceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeE
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQ 167 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~ 167 (234)
..++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|++|| +++..|.|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---~~g~afV~F~~~~~A~~Al~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---TTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC---CCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence 46899999999999999999999999 5 566666544 5899999999999999999 4677999999
Q ss_pred eEEEeCCCCCC
Q 026724 168 VAIDSATPLDD 178 (234)
Q Consensus 168 i~v~~a~~~~~ 178 (234)
|.|.++.+...
T Consensus 80 i~v~~~~~~~~ 90 (198)
T 2yh0_A 80 LKIRRPHDYQP 90 (198)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887643
No 200
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.47 E-value=2e-14 Score=101.61 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=39.4
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
++|+ +.+||||||+|.+.++|++||+ +++.|+|++|.|.++.++........
T Consensus 38 ~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~------------------------ 91 (115)
T 4f25_A 38 VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG------------------------ 91 (115)
T ss_dssp EEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC------------------------------
T ss_pred eecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccc------------------------
Confidence 4554 4589999999999999999994 78899999999999876543321110
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Q 026724 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAED 117 (234)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 117 (234)
.......+|||+|||+++|++.
T Consensus 92 ----------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 92 ----------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------------------------
T ss_pred ----------------cccCCCCceEeCCCCCCccccc
Confidence 0023456799999999999864
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=3.5e-13 Score=93.48 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=64.7
Q ss_pred CCCCEEEEeCC--CCCC--------CHHHHHHHHhhcCceeEEEeecCC----C-CcceEEEEEcChHHHHHHH--hcCC
Q 026724 99 RIGKKIFVGRL--PQEA--------TAEDLRRYFSRFGRILDVYVPKRT----G-HRGFGFVTFAEEVVADRVS--RRSH 161 (234)
Q Consensus 99 ~~~~~l~v~nl--~~~~--------~~~~l~~~f~~~G~v~~~~~~~~~----~-~~g~afV~f~~~~~a~~A~--~~~~ 161 (234)
.+++.|.|.|+ |..+ .+++|+++|++||.|.+|.|+++. + ++||+||+|.+.++|.+|+ +++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 3343 247899999999999999998332 3 6899999999999999998 5888
Q ss_pred ccCCeEeEEEeCCC
Q 026724 162 EICGQQVAIDSATP 175 (234)
Q Consensus 162 ~~~g~~i~v~~a~~ 175 (234)
.++||.|+|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=5e-14 Score=97.67 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=58.5
Q ss_pred EeCCCCCCCHHHHHHHH------------hhcCceeEEEeecC-CC-CcceEEEEEcChHHHHHHH--hcCCccCCeEeE
Q 026724 106 VGRLPQEATAEDLRRYF------------SRFGRILDVYVPKR-TG-HRGFGFVTFAEEVVADRVS--RRSHEICGQQVA 169 (234)
Q Consensus 106 v~nl~~~~~~~~l~~~f------------~~~G~v~~~~~~~~-~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~ 169 (234)
+.+|++.+++++|+++| ++||.|.+|.|+++ ++ ++|||||+|.+.++|.+|+ +++..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888777666 99999999999933 34 8999999999999999998 478899999999
Q ss_pred EEeC
Q 026724 170 IDSA 173 (234)
Q Consensus 170 v~~a 173 (234)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=5.4e-13 Score=110.82 Aligned_cols=74 Identities=14% Similarity=0.286 Sum_probs=62.9
Q ss_pred CCCCCEEEEeC--CCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh--cCCcc---CCe--Ee
Q 026724 98 QRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR--RSHEI---CGQ--QV 168 (234)
Q Consensus 98 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~---~g~--~i 168 (234)
..++.+|||+| |++.+|+++|+++|++||+|.+|.+.. +||||||+|++.++|++|+. ++.++ .|+ .|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 56788999999 588999999999999999999988765 48999999999999999984 66655 345 67
Q ss_pred EEEeCC
Q 026724 169 AIDSAT 174 (234)
Q Consensus 169 ~v~~a~ 174 (234)
.|.++.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888874
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=1.3e-12 Score=92.32 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCC--C---CCHHHHHHHHhhcCceeEEEeec--C----CC-CcceEEEEEcChHHHHHHH--hcCCccCC
Q 026724 100 IGKKIFVGRLPQ--E---ATAEDLRRYFSRFGRILDVYVPK--R----TG-HRGFGFVTFAEEVVADRVS--RRSHEICG 165 (234)
Q Consensus 100 ~~~~l~v~nl~~--~---~~~~~l~~~f~~~G~v~~~~~~~--~----~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g 165 (234)
++++|+|.|+-. + -.++||++.|++||.|.+|.|++ . ++ ++||+||+|.+.++|.+|+ +++..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999932 2 24789999999999999999982 2 34 6799999999999999998 58889999
Q ss_pred eEeEEEeCCC
Q 026724 166 QQVAIDSATP 175 (234)
Q Consensus 166 ~~i~v~~a~~ 175 (234)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=9.6e-12 Score=87.32 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCC
Q 026724 98 QRIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICG 165 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g 165 (234)
..+++.|.|.|+=... .+++|+++|++||.|.+|.|.+++ .+||+||+|.+.++|.+|+ +++..++|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3467889999983221 246889999999999999997543 5899999999999999998 58889999
Q ss_pred eEeEEEeCCC
Q 026724 166 QQVAIDSATP 175 (234)
Q Consensus 166 ~~i~v~~a~~ 175 (234)
+.|.|.++..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999853
No 206
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=86.63 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhc---CceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~---~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|+++||||||+|.+.++|++||+. ...|+|++|.|.++.++..
T Consensus 34 i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 579999999999999999999999999953 4479999999999987654
No 207
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=86.27 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=41.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cC----ceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DT----HELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~----~~i~gr~i~v~~a~~ 46 (234)
|++|+.|++|||||||+|.+.++|++||+ ++ +.|+||+|.|++|.+
T Consensus 43 i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 43 LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 57999999999999999999999999994 43 369999999999864
No 208
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=87.00 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=42.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~ 46 (234)
|++|+.||++||||||+|.+.++|++||+ ++..|.|++|+|.+|.|
T Consensus 51 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999994 78899999999999865
No 209
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.3e-11 Score=83.86 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF 51 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~~~ 51 (234)
|++|+.|+++||||||+|.+.++|++||.+++.|+|+.|.|.++.++....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 47 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCCC
T ss_pred EEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcCC
Confidence 467889999999999999999999999998999999999999998876544
No 210
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-10 Score=81.77 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcC-hHHHHHHHhc----CCccCCeEeEEE
Q 026724 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAE-EVVADRVSRR----SHEICGQQVAID 171 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~----~~~~~g~~i~v~ 171 (234)
..+.+.|||+||+++ +++++|+++|++||.|..|.+..+ .-.|||.|.+ .++|..|+.. +..|++..++++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 567899999999999 999999999999999999999854 2479999999 7888888742 558899888887
Q ss_pred eCC
Q 026724 172 SAT 174 (234)
Q Consensus 172 ~a~ 174 (234)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 211
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=76.77 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=62.3
Q ss_pred CCCCEEEEeCCC----CCCCH----HHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeEeE
Q 026724 99 RIGKKIFVGRLP----QEATA----EDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVA 169 (234)
Q Consensus 99 ~~~~~l~v~nl~----~~~~~----~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~i~ 169 (234)
++..+|+|.-++ .++-. .+|.+.|++||.|..++++.+ .+||+|.+.++|.+|| +++..++|+.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 456788888776 23333 678999999999999999754 4899999999999999 588899999999
Q ss_pred EEeCCCCCC
Q 026724 170 IDSATPLDD 178 (234)
Q Consensus 170 v~~a~~~~~ 178 (234)
|+++.|.-.
T Consensus 80 V~lkt~dW~ 88 (91)
T 2dnr_A 80 IALKSPSGP 88 (91)
T ss_dssp EEECCCSSC
T ss_pred EEeCCCCcc
Confidence 999987643
No 212
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=85.41 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+.|++|||||||+|++.++|++||+ ++..|+|+.|.|.++...
T Consensus 38 i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 38 ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 46899999999999999999999999994 788999999999998654
No 213
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.16 E-value=8.5e-12 Score=83.95 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=39.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.||++||||||+|.+.++|++|| ++++.|+|+.|.|.++.+...
T Consensus 35 i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 35 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 4678999999999999999999999999 478899999999999887543
No 214
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.14 E-value=1.7e-11 Score=84.21 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=43.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCC-cEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGG-STVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~g-r~i~v~~a~~~~ 48 (234)
|++|+.|+++||||||+|.+.++|++|| ++++.|.| ++|.|.++.++.
T Consensus 44 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 44 FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 6789999999999999999999999999 47889999 999999987643
No 215
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=8.2e-11 Score=80.45 Aligned_cols=50 Identities=36% Similarity=0.605 Sum_probs=45.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|+++||||||+|.+.++|++||+ +++.|.|+.|.|.++.++...
T Consensus 42 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCC
T ss_pred EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCccc
Confidence 46889999999999999999999999995 788999999999999876554
No 216
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=79.20 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=45.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|++|.|.++.++...
T Consensus 40 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 40 YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 57888899999999999999999999994 788999999999999887653
No 217
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=8.9e-11 Score=79.73 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=44.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|++|.|.++.++...
T Consensus 38 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 38 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 46888999999999999999999999995 688999999999999876543
No 218
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.12 E-value=6e-11 Score=78.32 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++|+. +++.|+|++|.|.++.++.
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 35788899999999999999999999994 7889999999999998754
No 219
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=6.2e-11 Score=81.48 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=45.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++...
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 44 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 46788999999999999999999999994 788999999999999887654
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.2e-10 Score=79.95 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=45.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|++|.|.++.++...
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 44 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 57889999999999999999999999994 788999999999999876543
No 221
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=8e-11 Score=81.14 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=44.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|++.++|++|| ++++.|.|+.|.|.++.++...
T Consensus 46 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 46 LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCCC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCCC
Confidence 4678999999999999999999999999 4688999999999999876543
No 222
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=1.8e-10 Score=80.34 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=45.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--c------CceeCCcEEEEeeccCCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--D------THELGGSTVVVDRATPKEDDF 51 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~------~~~i~gr~i~v~~a~~~~~~~ 51 (234)
|++|+.|++++|||||+|.+.++|++||. + ++.|+|+.|.|.++.++....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 47 VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 57899999999999999999999999994 6 789999999999998876543
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.7e-10 Score=79.65 Aligned_cols=51 Identities=24% Similarity=0.512 Sum_probs=45.2
Q ss_pred CCCCCCC-CCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCCCC
Q 026724 1 MPKDQGS-KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDF 51 (234)
Q Consensus 1 l~rD~~t-g~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~~~ 51 (234)
|++|+.| ++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++....
T Consensus 46 i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 46 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDKD 98 (104)
T ss_dssp CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCCC
T ss_pred EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCCCC
Confidence 5788888 999999999999999999999 46789999999999998776543
No 224
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.10 E-value=6.8e-11 Score=76.55 Aligned_cols=44 Identities=36% Similarity=0.594 Sum_probs=40.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeec
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRA 44 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a 44 (234)
|++|+.|++++|||||+|.+.++|++|++ +++.|+|++|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 57888899999999999999999999994 788999999999875
No 225
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.7e-10 Score=80.79 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=45.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|+.|.|.++.++...
T Consensus 55 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 55 IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 56888999999999999999999999994 788999999999999876543
No 226
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.10 E-value=1.5e-10 Score=80.70 Aligned_cols=50 Identities=30% Similarity=0.541 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|+++||||||+|.+.++|++||+ .++.|+|+.|.|.++.++...
T Consensus 57 i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCCC
T ss_pred EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCCC
Confidence 46889999999999999999999999996 458999999999999876543
No 227
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.09 E-value=7.7e-11 Score=78.50 Aligned_cols=47 Identities=30% Similarity=0.451 Sum_probs=41.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+.|++++|||||+|.+.++|++|++ +++.|+|+.|.|.++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 45788899999999999999999999995 788999999999999764
No 228
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.09 E-value=1.8e-10 Score=78.28 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=44.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|++++|||||+|.+.++|++|++ ++..|+|+.|.|.++.++..
T Consensus 34 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 34 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 57889999999999999999999999994 78899999999999987653
No 229
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.4e-10 Score=78.56 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=44.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|++|+|.++.++...
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 37 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 46788899999999999999999999995 788999999999999876543
No 230
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.7e-10 Score=81.19 Aligned_cols=51 Identities=35% Similarity=0.580 Sum_probs=45.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDF 51 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~~ 51 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|+|+.|.|.++.++....
T Consensus 59 i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCCC
T ss_pred EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccCC
Confidence 46788999999999999999999999995 6789999999999998876543
No 231
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.1e-10 Score=79.20 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=45.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|++|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 47 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 57888899999999999999999999995 688999999999999876543
No 232
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.6e-10 Score=79.58 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=44.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 46788899999999999999999999995 788999999999999876543
No 233
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=79.78 Aligned_cols=50 Identities=28% Similarity=0.478 Sum_probs=44.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|+|+.|.|.++.+....
T Consensus 45 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 45 IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 57889999999999999999999999995 788999999999999876543
No 234
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=80.28 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=36.4
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
++|||||+|.+.++|++|++ ++..|+|+.|.|.++.++..
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 79999999999999999995 67899999999999987654
No 235
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.06 E-value=3.7e-10 Score=79.32 Aligned_cols=51 Identities=27% Similarity=0.381 Sum_probs=45.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDF 51 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~ 51 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|+.|.|.++.++....
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 47 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 46788899999999999999999999994 7889999999999998775543
No 236
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.7e-10 Score=79.23 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=44.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|++|.|.++.++...
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 46888999999999999999999999994 788999999999999876543
No 237
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.05 E-value=8.4e-11 Score=80.68 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~~ 49 (234)
+++|+.|+++||||||+|.+.++|++|| ++++.|.|+.|.|.++.++..
T Consensus 48 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 48 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence 4678889999999999999999999999 477899999999999987654
No 238
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.2e-10 Score=81.88 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=42.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+ |+++||||||+|++.++|++||+ +++.|+|+.|.|.++.++.
T Consensus 48 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 48 VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 46888 89999999999999999999995 6789999999999987653
No 239
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.05 E-value=2.7e-10 Score=79.34 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|+|+.|.|.++.++.
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 57889999999999999999999999994 7889999999999998764
No 240
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.05 E-value=1.8e-10 Score=80.97 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|+++||||||+|.+.++|++||+ +++.|.|+.|+|.++.++...
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 57 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 46788899999999999999999999994 788999999999999876543
No 241
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=8.4e-11 Score=80.99 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+ |+++||||||+|++.++|++||+ +++.|+++.|.|.++.+..
T Consensus 46 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 46 IEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 46787 89999999999999999999994 6789999999999887654
No 242
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.04 E-value=1.1e-10 Score=75.54 Aligned_cols=44 Identities=32% Similarity=0.561 Sum_probs=40.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeec
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRA 44 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a 44 (234)
|++|+.|++++|||||+|.+.++|++|++ +++.|.|+.|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 31 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 57889999999999999999999999995 678999999999875
No 243
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.04 E-value=1.6e-10 Score=77.05 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeec
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRA 44 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a 44 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|+|+.|.|++|
T Consensus 43 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 43 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46788999999999999999999999995 577999999999875
No 244
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=79.88 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=43.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCce-eCCcEEEEeeccCCCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHE-LGGSTVVVDRATPKEDDFR 52 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~-i~gr~i~v~~a~~~~~~~~ 52 (234)
|++|+ |++++|||||+|.+.++|++||+ +++. |+|++|.|.++.++.....
T Consensus 42 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 42 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCCC
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCCC
Confidence 45788 89999999999999999999995 6777 9999999999987665443
No 245
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.9e-10 Score=76.80 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=41.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|++|+|.+|.
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 46888999999999999999999999994 7889999999999873
No 246
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=80.53 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=44.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|+++||||||+|++.++|++||. +++.|+|+.|.|.++.++...
T Consensus 48 i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 48 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCC
T ss_pred EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCC
Confidence 46788999999999999999999999996 788999999999999877654
No 247
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.03 E-value=2.2e-10 Score=75.88 Aligned_cols=45 Identities=31% Similarity=0.554 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~ 45 (234)
|++|+.|++++|||||+|.+.++|++|+ ++++.|+|++|+|.++.
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5678899999999999999999999999 47889999999999873
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=80.10 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=40.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~ 46 (234)
|++|+. |++||||||+|++.++|++||+ +++.|+||.|.|..+.+
T Consensus 47 i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 47 LLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp ECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 467876 9999999999999999999994 78899999999988764
No 249
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2.3e-10 Score=76.91 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=41.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (234)
|++| .+++++|||||+|.+.++|++||. ++..|.|+.|.|.++.++.
T Consensus 41 i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 41 IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCC
T ss_pred EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCC
Confidence 3567 789999999999999999999995 6779999999999998764
No 250
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=78.83 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=42.7
Q ss_pred CCCCC-CCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQ-GSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~-~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+ .|++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++.
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 56787 69999999999999999999999 36889999999999987653
No 251
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=7.9e-10 Score=77.76 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=42.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|++++|||||+|.+.++|++||+. ...|.|+.|.|+++.++..
T Consensus 49 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 49 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 98 (116)
T ss_dssp ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccCCC
Confidence 578899999999999999999999999953 3389999999999976543
No 252
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.7e-10 Score=79.89 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++.
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 45788999999999999999999999994 7889999999999998654
No 253
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=86.55 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+.||++||||||+|.+.++|++||. +++.|+|+.|.|.++.++
T Consensus 89 i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 89 FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 46899999999999999999999999994 788999999999998754
No 254
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.03 E-value=4.6e-10 Score=77.60 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCcee---CCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHEL---GGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i---~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|+++||||||+|.+.++|++||. ++..+ .+++|.|.++.++...
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 45 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 57899999999999999999999999994 67676 8899999999876543
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.2e-10 Score=77.58 Aligned_cols=48 Identities=6% Similarity=0.280 Sum_probs=42.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+ +++++|||||+|.+.++|++||+ +++.|.|++|.|.++.++..
T Consensus 49 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 49 LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 35677 89999999999999999999994 78899999999999987653
No 256
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=8.8e-10 Score=76.57 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=42.3
Q ss_pred CCCCCCCccceEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeeccCCCC
Q 026724 3 KDQGSKAHRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKED 49 (234)
Q Consensus 3 rD~~tg~srG~aFV~F~~~e~A~~Al~--~--~~~i~gr~i~v~~a~~~~~ 49 (234)
+|+.|+++||||||+|.+.++|++||. + +..|+|+.|.|.++.++..
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 788999999999999999999999995 3 3789999999999987654
No 257
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2.7e-10 Score=77.08 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=41.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~ 46 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|+|++|.|.++.+
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 45788999999999999999999999995 78899999999999864
No 258
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=5.7e-10 Score=77.22 Aligned_cols=50 Identities=28% Similarity=0.554 Sum_probs=44.3
Q ss_pred CCCC-CCCCCccceEEEEEcCHHHHHHHHh---cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKD-QGSKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD-~~tg~srG~aFV~F~~~e~A~~Al~---~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++| +.+++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 5677 7899999999999999999999994 688999999999999876543
No 259
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=4.2e-10 Score=77.67 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (234)
|++| .|++++|||||+|++.++|++||. +++.|+++.|.|.++..+.
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 4677 789999999999999999999995 6789999999999887654
No 260
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.01 E-value=1.9e-10 Score=78.67 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
|++|+.|+++||||||+|.+.++|++||+ ++..|.|+.|+|++|.
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 45788999999999999999999999994 7889999999999873
No 261
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=8.1e-10 Score=75.69 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=42.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++| .+++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++..
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 4556 689999999999999999999995 78899999999999987654
No 262
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=2.7e-10 Score=77.68 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++|+.|++++|||||+|.+.++|++||+ +++.|.|+.|+|+++..+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 5678899999999999999999999994 678999999999998754
No 263
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.00 E-value=3.3e-10 Score=81.57 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCc----eeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTH----ELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~----~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|+++||||||+|.+. +|++||+ ++. .|+|+.|.|+++.++..
T Consensus 57 i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 57 VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 678999999999999999999 9999994 677 99999999999987654
No 264
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.00 E-value=5.6e-10 Score=81.10 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=44.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|+++||||||+|.+.++|++||+ ++..|.|+.|.|.++.++...
T Consensus 74 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 74 IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 45788899999999999999999999995 688999999999999876554
No 265
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.00 E-value=3.1e-10 Score=75.87 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=42.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+.|++++|||||+|.+.++|++|+ ++++.|.|+.|.|.++.+.
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 4578889999999999999999999999 4688999999999998754
No 266
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=80.05 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=43.3
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++||+ ++..|.|++|.|.++.++.
T Consensus 58 i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 58 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 45788899999999999999999999994 7889999999999998764
No 267
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.00 E-value=7.8e-10 Score=82.06 Aligned_cols=49 Identities=29% Similarity=0.451 Sum_probs=44.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|+++||||||+|.+.++|++||. +++.|.|++|.|.++.++..
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 57899999999999999999999999994 78899999999999987643
No 268
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.99 E-value=3.1e-10 Score=81.54 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|+++||||||+|.+.++|++||+ ++..|+|++|.|.++.++.
T Consensus 78 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 78 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 46788999999999999999999999995 7889999999999998754
No 269
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.99 E-value=7.1e-10 Score=78.13 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=42.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+ |++++|||||+|.+.++|++||+ ++..|.|+.|.|.++.++..
T Consensus 39 i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 39 LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 35677 89999999999999999999995 78899999999999987654
No 270
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.98 E-value=3.2e-10 Score=76.81 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=40.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~ 46 (234)
|++|+.+++++|||||+|.+.++|++||+ +++.|.|++|+|.++.+
T Consensus 47 ~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 47 CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 35678899999999999999999999994 78899999999998753
No 271
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.97 E-value=6.3e-10 Score=79.41 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=45.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|.|+.|.|.++.++...
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 57888999999999999999999999994 788999999999999876543
No 272
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2e-09 Score=71.63 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCCCCEEEEeCCCCC-----CCH----HHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH-hcCCccCCeE
Q 026724 98 QRIGKKIFVGRLPQE-----ATA----EDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQ 167 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~~~~~~g~~ 167 (234)
-++..+|+|.-++.. +-. .+|.+.|++||+|..++++.+ -+||+|.+.++|.+|| +++..++|+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 446789999988743 322 568999999999999999854 2999999999999999 5888999999
Q ss_pred eEEEeCCC
Q 026724 168 VAIDSATP 175 (234)
Q Consensus 168 i~v~~a~~ 175 (234)
|+|++..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99987653
No 273
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=3.6e-10 Score=77.17 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=42.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcE----EEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGST----VVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~----i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|+. |+|.++.+..
T Consensus 42 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 42 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 46788999999999999999999999995 688999999 9999987653
No 274
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=3e-10 Score=79.70 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++|| ++++.|.|+.|.|.++.++.
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 57 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHH
T ss_pred EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCc
Confidence 4689999999999999999999999999 47889999999999987653
No 275
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=4e-10 Score=77.71 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=40.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~ 46 (234)
|++|+. +++||||||+|++.++|++||. +++.|+|+.|.|.++..
T Consensus 43 i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 43 MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 467887 9999999999999999999995 68899999999998764
No 276
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=1e-09 Score=76.59 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=40.5
Q ss_pred CCCCCCC---CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 2 PKDQGSK---AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 2 ~rD~~tg---~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
++|+.|+ +++|||||+|++.++|++||+ +++.|+|++|.|.++.++.
T Consensus 51 ~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 51 NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4566644 566999999999999999994 7889999999999998775
No 277
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=4.2e-10 Score=76.67 Aligned_cols=49 Identities=14% Similarity=0.332 Sum_probs=42.0
Q ss_pred CCCCC---CCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 2 PKDQG---SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 2 ~rD~~---tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
++|+. |++++|||||+|.+.++|++||. +++.|.|++|.|.++.++...
T Consensus 38 ~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 38 SKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp EEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred EecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 34555 77999999999999999999995 788999999999999876543
No 278
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=3.4e-10 Score=78.00 Aligned_cols=49 Identities=20% Similarity=0.435 Sum_probs=43.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|++++|||||+|.+.++|++|++ +++.|.|+.|.|.++.++..
T Consensus 40 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 40 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 35678899999999999999999999994 78899999999999987643
No 279
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.94 E-value=3e-10 Score=76.14 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=39.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|++++|||||+|.+.+ |++|++ +++.|+|++|.|++|.++..
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 33 LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4688999999999999999999 999995 68899999999999987644
No 280
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.93 E-value=2.5e-10 Score=81.51 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=41.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+. |++||||||+|++.++|++||+ ++..|+||.|.|..+.++
T Consensus 75 i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 75 LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 578888 9999999999999999999995 578999999999888643
No 281
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.93 E-value=8.8e-10 Score=81.68 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=44.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++...
T Consensus 71 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 71 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 46789999999999999999999999995 788999999999999876543
No 282
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.93 E-value=1.1e-09 Score=77.87 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=42.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|+|+.|.|.++.+..
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 35788899999999999999999999993 6889999999999987543
No 283
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.93 E-value=8.2e-10 Score=79.94 Aligned_cols=49 Identities=29% Similarity=0.451 Sum_probs=44.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|+++||||||+|.+.++|++||. +++.|.|++|.|.++.++..
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 57888999999999999999999999994 78899999999999986543
No 284
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.93 E-value=5.2e-10 Score=79.08 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+. |++||||||+|++.++|++||+ +++.|+|+.|.|.++..+
T Consensus 52 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 52 FIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 356777 9999999999999999999995 788999999999998654
No 285
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.93 E-value=4e-10 Score=81.56 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+. |++||||||+|++.++|++||+ +++.|+|+.|.|.++.++
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 457887 9999999999999999999995 778999999999988654
No 286
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=3.2e-10 Score=73.64 Aligned_cols=44 Identities=32% Similarity=0.549 Sum_probs=39.4
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeec
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a 44 (234)
|++|+.|++++|||||+|.+.++|++|++. .+.|+|++|.|++|
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 467889999999999999999999999952 37999999999987
No 287
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.92 E-value=3.1e-10 Score=79.72 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=54.8
Q ss_pred CCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCCCCCccCCCCCCCCCCccchhhhhhhhcCCCCcc
Q 026724 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (234)
++.++|||||+|.+.++|++|+. ++..|+|+.|.|.++.++...
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~---------------------------------- 88 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF---------------------------------- 88 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------------------------
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------------------------
Confidence 35679999999999999999995 788999999999998754321
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhcCc
Q 026724 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR 127 (234)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 127 (234)
.+++...++++|+++|++||.
T Consensus 89 ----------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 ----------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ----------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ----------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 356777899999999999985
No 288
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.92 E-value=9.1e-10 Score=73.33 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=41.9
Q ss_pred CCCCCCCCC-ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKA-HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~-srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.|+. ++|||||+|.+.++|++|++ ++..|+|+.|.|.++.+..
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 456777766 99999999999999999995 7899999999999997643
No 289
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.1e-09 Score=72.98 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=39.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+.| ||||||+|.+.++|++||+ ++..|+|++|+|.++.++.
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4567776 8999999999999999994 7889999999999997654
No 290
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=75.15 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=41.7
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
++| +++++|||||+|.+.++|++||+ +++.|.|++|.|.++.++...
T Consensus 48 ~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 48 MME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp EEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred EcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 455 89999999999999999999995 788999999999999877654
No 291
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.91 E-value=1.1e-09 Score=75.68 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCCCCC-CCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccC
Q 026724 1 MPKDQGS-KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~t-g~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~ 46 (234)
|++|+.+ ++++|||||+|++.++|++|+ +++..|+||.|.|.++..
T Consensus 45 i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 45 IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 3567654 799999999999999999999 478999999999999864
No 292
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.90 E-value=5.1e-10 Score=77.67 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+. |++||||||+|.+.++|++||. +++.|+|+.|.|.++.++
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence 577888 9999999999999999999995 678999999999988754
No 293
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.90 E-value=1.1e-09 Score=75.48 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCC---cEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGG---STVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~g---r~i~v~~a~~~~~~ 50 (234)
|++|+ +++++|||||+|.+.++|++||+ ++..|.+ ++|.|.++.++...
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 47 VLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp EEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred EEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 35676 79999999999999999999994 7778887 99999999876543
No 294
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.90 E-value=2.5e-09 Score=76.12 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+ |++++|||||+|.+.++|++||. ++..|.|+.|.|.+|.+...
T Consensus 67 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 67 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 35677 89999999999999999999995 78899999999999987543
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.90 E-value=7e-10 Score=78.23 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=40.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
|++|+.|+++||||||+|.+.++|++||+ ++..|+|+.|+|+++.
T Consensus 72 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 72 VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 46788999999999999999999999995 6889999999999863
No 296
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=3.2e-10 Score=80.86 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=41.3
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~ 47 (234)
+.|..|++++|||||+|++.++|++||+ +++.|+|+.|.|.++.++
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 4567799999999999999999999995 788999999999998754
No 297
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.89 E-value=1.3e-09 Score=75.47 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=39.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
|++|+ |++++|||||+|.+.++|++||+ ++..|.|+.|.|.++.
T Consensus 61 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 61 VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 35677 89999999999999999999995 7889999999999875
No 298
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=1.8e-10 Score=81.12 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=44.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||. ++..|.|++|.|.++.++...
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 47 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 46788899999999999999999999995 788999999999999877554
No 299
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.3e-09 Score=73.62 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=40.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
|++|+ +++++|||||+|.+.++|++||+ +++.|+|+.|.|+++....
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 47 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp EEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred EEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 35666 59999999999999999999995 7889999999999987543
No 300
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=4.6e-10 Score=79.86 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~ 47 (234)
|++| .||++||||||+|++.++|++||+ +++.|.+|.|.|..+.++
T Consensus 59 i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 59 FVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp EEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 3567 489999999999999999999995 678999999999887644
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.87 E-value=6.1e-10 Score=87.86 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=42.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
|++|+.|+++||||||+|++.++|++||+ +++.|+|+.|.|.++.+.
T Consensus 102 i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 102 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 56899999999999999999999999995 678999999999998754
No 302
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.87 E-value=1.8e-09 Score=74.49 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeec
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRA 44 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a 44 (234)
|++|+. +++||||||+|.+.++|++|+ +++..|+||+|.|.++
T Consensus 59 i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 59 VCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp ECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 356654 799999999999999999999 4789999999999875
No 303
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.86 E-value=2.9e-09 Score=70.37 Aligned_cols=38 Identities=11% Similarity=0.338 Sum_probs=34.6
Q ss_pred CCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeecc
Q 026724 8 KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRAT 45 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~ 45 (234)
..|||||||+|.++++|++|+ +|+..|.|++|+|++|.
T Consensus 40 ~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 40 YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 348999999999999999999 47889999999999984
No 304
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.8e-09 Score=72.03 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=39.9
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
++|+. .+||||||+|.+.++|++||. +++.|.|++|.|.++.++...
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 48 ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 45544 479999999999999999994 788999999999999876543
No 305
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=73.44 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=39.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~ 46 (234)
|++|+. ++++|||||+|.+.++|++||+ +++.|.|++|.|.++..
T Consensus 48 i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 48 ICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 356765 9999999999999999999995 78899999999998753
No 306
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.1e-10 Score=74.62 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=39.5
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~ 45 (234)
|++|+.|++++|||||+|.+.++|++|++ +++.|.|+.|+|.++.
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 46788999999999999999999999995 6789999998877654
No 307
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.85 E-value=5.4e-10 Score=76.74 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=42.9
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+ |+++||||||+|++.++|++||.+++.|+|+.|.|.++.++..
T Consensus 41 i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 41 IITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp EEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC-
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcc
Confidence 45777 8999999999999999999999988899999999999987654
No 308
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.85 E-value=6.4e-10 Score=80.78 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=42.2
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+. +++||||||+|++.++|++||+ +++.|.++.|.|.++.++..
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 578887 9999999999999999999994 67899999999998876543
No 309
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.84 E-value=3.1e-09 Score=73.37 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCCCCccceEEEEEcCHHHHHHHHh--cCceeCCc-EEEEeeccCCC
Q 026724 5 QGSKAHRGIGFITFASADSVENLMV--DTHELGGS-TVVVDRATPKE 48 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr-~i~v~~a~~~~ 48 (234)
+.||++||||||+|.+.++|++||. +++.|+|+ +|.|.++....
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 4689999999999999999999995 78899999 99999987543
No 310
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.83 E-value=5e-09 Score=72.35 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=40.1
Q ss_pred CCCCCCC--CCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccC
Q 026724 1 MPKDQGS--KAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~t--g~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~ 46 (234)
|++|+.+ ++++|||||+|++.++|++|+ +++..++||+|.|.++..
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 5677765 479999999999999999999 489999999999998754
No 311
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.83 E-value=2.3e-09 Score=80.23 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++|+.|++++|||||+|.+.++|++||. ++..|.|++|.|.++.++..
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 45788999999999999999999999994 78899999999999987654
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.6e-09 Score=74.89 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 4 DQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 4 D~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
+..|++++|||||+|.+.++|++||. +++.|.|++|.|.++.++...
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 60 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 34489999999999999999999994 788999999999999876543
No 313
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=76.47 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=39.5
Q ss_pred CCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
.|+++||||||+|.+.++|++||. ++..|.|++|.|.++..+..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 478999999999999999999994 78899999999999987643
No 314
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=7.5e-09 Score=71.05 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
++|+. .++|||||+|.+.++|++||. +++.|+|+.|.|.++.++...
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 48 IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 45544 499999999999999999994 788999999999999876543
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.81 E-value=5.8e-09 Score=70.64 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=39.8
Q ss_pred CCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 5 QGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
..+++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++..
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 3578999999999999999999995 67899999999999987643
No 316
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.78 E-value=3.3e-09 Score=71.21 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
.+++++|||||+|.+.++|++||+ +++.|+|+.|.|.++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 478999999999999999999995 78899999999999987643
No 317
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=4.7e-09 Score=73.47 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=39.7
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCcee--------CCcEEEEeeccCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHEL--------GGSTVVVDRATPK 47 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i--------~gr~i~v~~a~~~ 47 (234)
|++|+ |+++||||||+|.+.++|++||. ++..| .+++|.|.++.++
T Consensus 57 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 57 ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 45677 89999999999999999999994 67777 6888999998754
No 318
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=9.6e-09 Score=71.97 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCCCCCC---CCccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccC
Q 026724 1 MPKDQGS---KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATP 46 (234)
Q Consensus 1 l~rD~~t---g~srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~ 46 (234)
+++|+.| |++||||||+|++.++|++||+..+.++|+.|.+..+..
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPT 87 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSS
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCC
Confidence 4567777 799999999999999999999888889999998876543
No 319
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.7e-09 Score=75.43 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=37.3
Q ss_pred CCCCCCCCCccceEEEEEcC----HHH----HHHHHh----cCceeCCcEEEEeecc
Q 026724 1 MPKDQGSKAHRGIGFITFAS----ADS----VENLMV----DTHELGGSTVVVDRAT 45 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~----~e~----A~~Al~----~~~~i~gr~i~v~~a~ 45 (234)
|+.|+.||+|+|||||+|.+ +++ |.+|+. ++..|+|++|+|.+..
T Consensus 38 li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 46899999999999999996 433 788875 6889999999998754
No 320
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=1.5e-08 Score=70.33 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
.+++++|||||+|++.++|++||+ +++.|+|+.|.|.++.++...
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 356799999999999999999994 788999999999999876543
No 321
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=69.63 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=37.6
Q ss_pred CCccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCC
Q 026724 8 KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~ 49 (234)
+++||||||+|++.++|++||..++.+.+++|.|.|+.++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCC
Confidence 479999999999999999999888888999999999876643
No 322
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=2.6e-08 Score=77.96 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=60.0
Q ss_pred CCEEEEeCCC-----CCCCHHHHHHHHhhcCceeEEEee------cCCC-CcceEEEEEcChHHHHHHH--hcCCccCCe
Q 026724 101 GKKIFVGRLP-----QEATAEDLRRYFSRFGRILDVYVP------KRTG-HRGFGFVTFAEEVVADRVS--RRSHEICGQ 166 (234)
Q Consensus 101 ~~~l~v~nl~-----~~~~~~~l~~~f~~~G~v~~~~~~------~~~~-~~g~afV~f~~~~~a~~A~--~~~~~~~g~ 166 (234)
...+.+.|+- ..-.+++|.+.|++||.|.++.|+ +.++ ++|++||+|.+.++|.+|+ +++..++||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555552 234678999999999999999987 2334 7899999999999999998 588899999
Q ss_pred EeEEEeCC
Q 026724 167 QVAIDSAT 174 (234)
Q Consensus 167 ~i~v~~a~ 174 (234)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999875
No 323
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.73 E-value=5.2e-09 Score=68.60 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=33.4
Q ss_pred CCCCCccceEEEEEcCHHHHHHHHh--cCceeCCc-EEEE
Q 026724 5 QGSKAHRGIGFITFASADSVENLMV--DTHELGGS-TVVV 41 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr-~i~v 41 (234)
+.||++||||||+|.+.++|++|+. ++..|+|+ +|+|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4689999999999999999999995 78899999 8876
No 324
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.72 E-value=1.6e-08 Score=70.46 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=35.7
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
.+++|||||+|++.++|++||+ ++..|+|+.|.|.++...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4699999999999999999994 788999999999998654
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.71 E-value=6.7e-09 Score=75.74 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 5 QGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 5 ~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
..|++++|||||+|.+.++|++||. ++..|.|+.|.|.++.+...
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 4689999999999999999999994 78899999999999976543
No 326
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.1e-08 Score=71.02 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=38.4
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++|+ +.+||||||+|.+.++|++|++ +++.|+|+.|.|.++.++
T Consensus 62 ~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 62 IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4554 4599999999999999999994 788999999999999765
No 327
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=69.49 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=37.9
Q ss_pred CCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
+++++|||||+|.+.++|++||. ++..|+|+.|.|.++.++.
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 46889999999999999999994 7889999999999998754
No 328
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.69 E-value=2.9e-08 Score=85.39 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=45.0
Q ss_pred CCCCCCCCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 1 l~rD~~tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|++|+.|++++|||||+|.+.++|++||. +++.|.|+.|.|.++.++...
T Consensus 134 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 134 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCC
Confidence 57888999999999999999999999993 788999999999999876543
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=4.3e-08 Score=66.45 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=37.5
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
+++||||||+|.+.++|++||. +++.|.|++|.|.++.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 3689999999999999999994 78899999999999987654
No 330
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.67 E-value=8.6e-09 Score=72.64 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccC
Q 026724 7 SKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~ 46 (234)
+++++||+||+|++.++|.+|+ +++..++||.|.|.++..
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 5789999999999999999999 478999999999998753
No 331
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.66 E-value=1.1e-08 Score=69.24 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCCccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
|++++|||||+|.+.++|++|+. ++..|.|+.|.|.++.++..
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 57899999999999999999994 78899999999999987543
No 332
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.8e-08 Score=68.66 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=37.3
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
.++|||||+|.+.++|++|+. +++.|+|++|.|.++.++...
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCc
Confidence 389999999999999999994 788999999999999876543
No 333
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=2.6e-08 Score=68.51 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=35.2
Q ss_pred ccceEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeeccCCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~--~~~i~gr~i~v~~a~~~~~~ 50 (234)
.||||||+|++.++|++||+ + +..|.|++|.|.++.++...
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 38999999999999999995 3 36899999999999876543
No 334
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=4.2e-08 Score=65.93 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=37.3
Q ss_pred CccceEEEEEcCHHHHHHHHh--cC-ceeCCcEEEEeeccCCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DT-HELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~-~~i~gr~i~v~~a~~~~~~ 50 (234)
.++|||||+|.+.++|++||+ ++ +.|+|++|.|.++.++...
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 579999999999999999994 77 8999999999999876543
No 335
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.60 E-value=4.9e-08 Score=66.47 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=34.1
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCc--eeCCcEEEEeeccCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTH--ELGGSTVVVDRATPKE 48 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~--~i~gr~i~v~~a~~~~ 48 (234)
++||||||+|++.++|.+|+. ++. .|.|++|.|.++.+++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 468999999999999999995 333 5899999999998654
No 336
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=6.5e-08 Score=66.18 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=35.2
Q ss_pred ccceEEEEEcCHHHHHHHHh----cCceeCCcEEEEeeccCCCCC
Q 026724 10 HRGIGFITFASADSVENLMV----DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~----~~~~i~gr~i~v~~a~~~~~~ 50 (234)
.||||||+|++.++|++|++ ++..|.|++|.|.++.++...
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 38999999999999999995 356899999999999876543
No 337
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.59 E-value=5.2e-08 Score=64.82 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=35.4
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++||||||+|.+.++|++|+. ++..|.|++|+|.++...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 689999999999999999994 788999999999998643
No 338
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.1e-07 Score=64.69 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=36.8
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
.+||||||+|.+.++|++||. +++.|.|+.|.|.++.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 468999999999999999994 78899999999999987654
No 339
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=5.3e-08 Score=67.81 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=35.9
Q ss_pred CccceEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeeccCCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~--~~~i~gr~i~v~~a~~~~~~ 50 (234)
++||||||+|++.++|++||. + ...|.|++|.|.++..+...
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 578999999999999999995 3 34699999999999876543
No 340
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.57 E-value=7.6e-08 Score=64.25 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=31.6
Q ss_pred ccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCC
Q 026724 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~ 49 (234)
|||||||+|++.++|+++....+.+.++.|.|.++.++..
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC----
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCCc
Confidence 8999999999999999655555677899999999987653
No 341
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.55 E-value=2.6e-07 Score=63.25 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=36.9
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDF 51 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~~ 51 (234)
.+|||||+|.+.++|++||+ +++.|.|+.|.|.++.++....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 47899999999999999995 7889999999999998766543
No 342
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1e-07 Score=66.00 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=36.1
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
+|||||+|.+.++|++||. +++.|.|+.|.|.++.++...
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 8999999999999999994 788999999999999876543
No 343
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=4.4e-08 Score=66.89 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=35.4
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++||||||+|.+.++|++|+. ++..|+|+.|+|.++.++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 689999999999999999994 788999999999998753
No 344
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=1e-07 Score=65.28 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=34.1
Q ss_pred ccceEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeeccCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKED 49 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~--~~~i~gr~i~v~~a~~~~~ 49 (234)
.||||||+|++.++|++||. + ...|.|++|.|.++..+..
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 46999999999999999995 4 3469999999999986544
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=8.9e-08 Score=63.89 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=35.5
Q ss_pred ceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCCCC
Q 026724 12 GIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~~~ 50 (234)
|||||+|.+.++|++|+ +++..|.||+|+|.+|..+.+.
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 99999999999999999 4789999999999999876553
No 346
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=8.3e-08 Score=64.64 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHHh-cCceeCCcEEEEeeccCCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al~-~~~~i~gr~i~v~~a~~~~~ 49 (234)
+.|+.|++ ||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 45677776 99999999999999995 77899999999998876544
No 347
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=1.3e-07 Score=63.01 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=35.7
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (234)
||||||+|.+.++|++|+. ++..|.|++|.|.++.++...
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 7999999999999999994 678999999999999876543
No 348
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.50 E-value=1e-07 Score=67.44 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=37.0
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
++||||||+|.+.++|++||+ +++.|.|+.|.|.++.++..
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 689999999999999999994 78899999999999987643
No 349
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.50 E-value=1.4e-07 Score=63.94 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.5
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++|||||+|.+.++|++|+. ++..|+|+.|.|.++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 58999999999999999994 688999999999998764
No 350
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=2.4e-07 Score=63.72 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=34.3
Q ss_pred ccceEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeeccCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKED 49 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~--~~~i~gr~i~v~~a~~~~~ 49 (234)
.||||||+|++.++|++|+. + ...|.|++|.|.++..+..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 48999999999999999995 3 3469999999999987654
No 351
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=8.5e-08 Score=65.19 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=36.4
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
++||||||+|.+.++|++|++ +++.|.|++|.|.++.++..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 458999999999999999994 78899999999999987643
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.2e-07 Score=63.00 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=35.9
Q ss_pred ccceEEEEEcCHHHHHHHHhcCceeCCcEEEEeeccCCCCC
Q 026724 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~~~~~i~gr~i~v~~a~~~~~~ 50 (234)
+||||||+|.+.++|++|+...+.+.+++|.|.++.++...
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCCC
Confidence 89999999999999998876667889999999999876543
No 353
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=3.8e-07 Score=61.05 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=35.6
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
.++||||+|.+.++|++|+. +++.|.|+.|.|.++.++..
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 36699999999999999994 78899999999999987654
No 354
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.9e-07 Score=64.52 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=34.8
Q ss_pred ceEEEEEcCHHHHHHHHh--cCceeCC-----cEEEEeeccCCCCC
Q 026724 12 GIGFITFASADSVENLMV--DTHELGG-----STVVVDRATPKEDD 50 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al~--~~~~i~g-----r~i~v~~a~~~~~~ 50 (234)
|||||+|++.++|++||+ +++.|.| +.|.|.++.++...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 899999999999999995 6789999 99999999876543
No 355
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.5e-06 Score=58.95 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc-----CceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEE
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAID 171 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~ 171 (234)
..++|-+-|||..+++..|+.+.+++ |.|+.+.+..+ .+-|+|+|.|...|.+|. +++.+|.|++|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46788889999999999999999999 99999988865 467999999999999985 58999999999985
No 356
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.45 E-value=1.8e-07 Score=63.29 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=34.8
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeC--CcEEEEeeccCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELG--GSTVVVDRATPKE 48 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~--gr~i~v~~a~~~~ 48 (234)
||||||+|.+.++|++|++ +++.|. |++|.|.++.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 8999999999999999995 788999 9999999998764
No 357
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.44 E-value=1.7e-07 Score=64.98 Aligned_cols=39 Identities=18% Similarity=0.443 Sum_probs=35.3
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (234)
++|||||+|++.++|++||. +++.|+|+.|.|.++.+..
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 68999999999999999994 7889999999999997544
No 358
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.44 E-value=1.9e-07 Score=64.65 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=35.0
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
||||||+|.+.++|++|+. ++..|+|+.|.|.++.++..
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 8999999999999999994 78899999999999987543
No 359
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.43 E-value=1.9e-07 Score=65.30 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=34.1
Q ss_pred ccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccC
Q 026724 10 HRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATP 46 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~ 46 (234)
++|||||+|++.++|++|+ +++..++||.|.|.++..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 6999999999999999999 489999999999999853
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.3e-07 Score=63.93 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=35.9
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
+||||||+|.+.++|++||. ++..|.|++|.|.++.++..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 58999999999999999995 78899999999999977654
No 361
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=2.1e-07 Score=61.30 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=33.1
Q ss_pred CccceEEEEEcCHHHHHHHHh---cCceeCCcEEEEeecc
Q 026724 9 AHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRAT 45 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~---~~~~i~gr~i~v~~a~ 45 (234)
++||||||+|.+.++|++|+. +++.|+|++|.|+++.
T Consensus 46 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 46 QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 368999999999999999995 6789999999999873
No 362
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=2.1e-07 Score=65.49 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=35.2
Q ss_pred ccceEEEEEcCHHHHHHHHh--c--CceeCCcEEEEeeccCCCCC
Q 026724 10 HRGIGFITFASADSVENLMV--D--THELGGSTVVVDRATPKEDD 50 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~--~~~i~gr~i~v~~a~~~~~~ 50 (234)
.||||||+|++.++|++||+ + +..|.|++|.|.++.++...
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 48999999999999999995 3 45899999999999876543
No 363
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.1e-07 Score=62.73 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=36.8
Q ss_pred CCCCCCCCccceEEEEEcCHHHHHHHH--hcCceeCCcEEEEeeccCCC
Q 026724 2 PKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKE 48 (234)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~e~A~~Al--~~~~~i~gr~i~v~~a~~~~ 48 (234)
++|+.++. |||+|.+.++|++|| ++++.|.|++|.|.++.++.
T Consensus 49 ~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 49 NTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp CCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred ecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 55666554 999999999999999 47889999999999998763
No 364
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=3.9e-07 Score=60.73 Aligned_cols=39 Identities=13% Similarity=0.327 Sum_probs=34.9
Q ss_pred cceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCCCC
Q 026724 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (234)
++||||+|.+.++|++||. +++.|.|+.|.|.++.++..
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 5699999999999999994 78899999999999987643
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.41 E-value=2.8e-07 Score=60.89 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCccceEEEEEcCHHHHHHHH-hcCceeCCcEEEEee
Q 026724 8 KAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDR 43 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~ 43 (234)
.++||||||+|.+.++|++|+ ++++.|.|+.|+|++
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 356999999999999999999 468899999999974
No 366
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=2.3e-07 Score=64.56 Aligned_cols=39 Identities=5% Similarity=-0.008 Sum_probs=35.3
Q ss_pred CccceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
++||||||+|.+.++|++||. ++..|.|++|.|.++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 478999999999999999994 788999999999998754
No 367
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.39 E-value=3.6e-07 Score=67.72 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCccceEEEEEcCHHHHHHHHh--cCceeCC--cEEEEeeccCCCC
Q 026724 8 KAHRGIGFITFASADSVENLMV--DTHELGG--STVVVDRATPKED 49 (234)
Q Consensus 8 g~srG~aFV~F~~~e~A~~Al~--~~~~i~g--r~i~v~~a~~~~~ 49 (234)
+.++|||||+|++.++|++|++ ++..|.+ ++|+|+++.++..
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 3478999999999999999995 7888965 9999999987643
No 368
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.1e-05 Score=54.17 Aligned_cols=76 Identities=32% Similarity=0.374 Sum_probs=64.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-----cCceeEEEeecCCCCcceEEEEEcChHHHHHHHhc-CCccCCeEeEEEe
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSR-----FGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 172 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~-----~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~ 172 (234)
....+|.|.|||..++++.|+-+|+. =|+|..+.... .-|+|+|.+.+.|++.|.+ .|.|++..|.|.-
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 35689999999999999999999976 26788887753 5699999999999999976 8999999999987
Q ss_pred CCCCCCC
Q 026724 173 ATPLDDA 179 (234)
Q Consensus 173 a~~~~~~ 179 (234)
..++...
T Consensus 81 ~~~~~~~ 87 (104)
T 2dhx_A 81 APPRAPA 87 (104)
T ss_dssp CCCCCCC
T ss_pred CCCCCcc
Confidence 6665543
No 369
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=7.5e-07 Score=62.05 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=33.0
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCcee-----CCcEEEEeeccCC
Q 026724 10 HRGIGFITFASADSVENLMV--DTHEL-----GGSTVVVDRATPK 47 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i-----~gr~i~v~~a~~~ 47 (234)
+||||||+|++.++|++|++ +++.| .+++|.|.++...
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 48999999999999999994 67777 6899999998644
No 370
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.28 E-value=9.5e-07 Score=62.98 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=35.6
Q ss_pred Cccce-EEEEEcCHHHHHHHH--hcCceeCC--cEEEEeeccCCCC
Q 026724 9 AHRGI-GFITFASADSVENLM--VDTHELGG--STVVVDRATPKED 49 (234)
Q Consensus 9 ~srG~-aFV~F~~~e~A~~Al--~~~~~i~g--r~i~v~~a~~~~~ 49 (234)
+++|| |||+|.+.++|++|+ +++..|.+ +.|+|+++.++.-
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 35788 999999999999999 47889988 8999999987653
No 371
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.15 E-value=1.8e-06 Score=60.31 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=30.1
Q ss_pred ceEEEEEcCHHHHHHHHh--cCceeCCcE-----EEEeeccCCC
Q 026724 12 GIGFITFASADSVENLMV--DTHELGGST-----VVVDRATPKE 48 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al~--~~~~i~gr~-----i~v~~a~~~~ 48 (234)
|||||+|++.++|++||+ ++..|+|+. |+|..+.++.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 999999999999999994 788999988 7777665543
No 372
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.14 E-value=3e-06 Score=60.01 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=33.4
Q ss_pred ce-EEEEEcCHHHHHHHHh--cCceeCC--cEEEEeeccCCCC
Q 026724 12 GI-GFITFASADSVENLMV--DTHELGG--STVVVDRATPKED 49 (234)
Q Consensus 12 G~-aFV~F~~~e~A~~Al~--~~~~i~g--r~i~v~~a~~~~~ 49 (234)
|| |||+|++.++|++|++ ++..|.| ++|+|.+|.++..
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 86 9999999999999994 7889987 6999999987653
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=52.92 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=31.6
Q ss_pred eEEEEEcCHHHHHHHH-hcCceeCCcEEEEeeccCC
Q 026724 13 IGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47 (234)
Q Consensus 13 ~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~~~ 47 (234)
.+||+|.+.++|.+|| +++..++||.|+|+++.+.
T Consensus 51 ~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPS 86 (91)
T ss_dssp SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCS
T ss_pred CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCC
Confidence 3899999999999999 5888999999999988753
No 374
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=0.00021 Score=48.23 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCCC-C----HHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHH--hcCCccCCeEeEEEe
Q 026724 100 IGKKIFVGRLPQEA-T----AEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVS--RRSHEICGQQVAIDS 172 (234)
Q Consensus 100 ~~~~l~v~nl~~~~-~----~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~--~~~~~~~g~~i~v~~ 172 (234)
-.++|+|.||+.++ . .+.++++|..|+++......+. -.-..|.|.+.++|.+|- ++...++|+.|+|-+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 35789999998866 2 2578999999999888766653 234689999999999995 456689999999999
Q ss_pred CCCCC
Q 026724 173 ATPLD 177 (234)
Q Consensus 173 a~~~~ 177 (234)
+++..
T Consensus 81 gq~~~ 85 (104)
T 1wey_A 81 AQTLH 85 (104)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98543
No 375
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.66 E-value=0.00021 Score=47.44 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=44.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
......++| ++|.++...||.++|+.||.| .|..+.+ .-|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD----TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET----TEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC----CeEEEEecCHHHHHHHHH
Confidence 334556667 999999999999999999954 4666655 379999999999988874
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=4.9e-05 Score=50.46 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=29.4
Q ss_pred EEEEEcCHHHHHHHH-hcCceeCCcEEEEeecc
Q 026724 14 GFITFASADSVENLM-VDTHELGGSTVVVDRAT 45 (234)
Q Consensus 14 aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~ 45 (234)
+||+|.+.++|.+|| +++..++||.|+|++..
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 999999999999999 58889999999998754
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.30 E-value=0.0002 Score=59.40 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=28.6
Q ss_pred ccceEEEEEcCHHHHHHHHh--cCcee---CCc--EEEEeecc
Q 026724 10 HRGIGFITFASADSVENLMV--DTHEL---GGS--TVVVDRAT 45 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~--~~~~i---~gr--~i~v~~a~ 45 (234)
+||||||+|++.++|++||+ |+..+ .|+ +|.|.++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 78999999999999999995 66655 345 57777763
No 378
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.001 Score=46.07 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=56.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh-cCCccCC-eEeEEEeC
Q 026724 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG-QQVAIDSA 173 (234)
Q Consensus 98 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~g-~~i~v~~a 173 (234)
......|.|-+.|... ...|..+|++||.|.+..... ...+-.|.|.+..+|++||. |+..|++ -.|-|...
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~---~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN---TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS---SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC---CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 3346788999999886 556778899999999887632 35789999999999999995 7777775 56677664
No 379
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00041 Score=46.23 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=42.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
..++| ++|.++...||.++|+.||. ..|.++.+ .-|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHH
Confidence 34566 99999999999999999994 45666665 379999999999998874
No 380
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.17 E-value=0.00025 Score=53.28 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.9
Q ss_pred CCCCccceEEEEEcCHHHHHHHHhc
Q 026724 6 GSKAHRGIGFITFASADSVENLMVD 30 (234)
Q Consensus 6 ~tg~srG~aFV~F~~~e~A~~Al~~ 30 (234)
.|++++|||||+|.+.++|++||+.
T Consensus 124 ~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 124 RSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999975
No 381
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.88 E-value=0.0045 Score=40.85 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=46.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cCC-C--CcceEEEEEcChHHHHHHHh--cCC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRT-G--HRGFGFVTFAEEVVADRVSR--RSH 161 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~~-~--~~g~afV~f~~~~~a~~A~~--~~~ 161 (234)
.+|.|++||+++||+++.+.++.+..+.....+ +.+ + .-.-|+|.|.+.+++..-.. +++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 579999999999999999999998877666665 211 2 34669999999888777653 455
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.0016 Score=43.78 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=30.2
Q ss_pred ceEEEEEcCHHHHHHHHhc-CceeCCcEEEEeecc
Q 026724 12 GIGFITFASADSVENLMVD-THELGGSTVVVDRAT 45 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al~~-~~~i~gr~i~v~~a~ 45 (234)
+-|+|+|.+.+.|++.|.+ .|.|.+.+|.|....
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 5689999999999999987 999999999997544
No 383
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.56 E-value=0.0011 Score=47.97 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=19.6
Q ss_pred ccceEEEEEcCHHHHHHHHhc
Q 026724 10 HRGIGFITFASADSVENLMVD 30 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~~ 30 (234)
+||||||+|.+.++|++||..
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHH
Confidence 699999999999999999964
No 384
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.56 E-value=0.0015 Score=51.32 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred CccceEEEEEcCHHHHHHHHhc
Q 026724 9 AHRGIGFITFASADSVENLMVD 30 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~~ 30 (234)
.+||||||+|.+.++|+.|++.
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHH
Confidence 4799999999999999999953
No 385
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.50 E-value=0.0015 Score=56.09 Aligned_cols=55 Identities=15% Similarity=0.396 Sum_probs=41.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
.+.|+|. .|..+++.+|.++|++||.|.++.+-++ ..-|+.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 4689997 7999999999999999999999877654 34799999999999887764
No 386
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.41 E-value=0.0057 Score=42.96 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCceeE-EEeec-----------CCC-----CcceEEEEEcChHHHHHHH-hcCCc
Q 026724 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPK-----------RTG-----HRGFGFVTFAEEVVADRVS-RRSHE 162 (234)
Q Consensus 101 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~-----------~~~-----~~g~afV~f~~~~~a~~A~-~~~~~ 162 (234)
...|.|-+.|.+.+.. +.+.|++||.|.+ +.+.+ ... ...+-.|+|++..+|.+|| .++..
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4567788897776654 5677999999876 22211 000 1467799999999999999 58899
Q ss_pred cCCeEeEEEeCC
Q 026724 163 ICGQQVAIDSAT 174 (234)
Q Consensus 163 ~~g~~i~v~~a~ 174 (234)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887664
No 387
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.31 E-value=0.02 Score=38.03 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee--cC-CC--CcceEEEEEcChHHHHHHH
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KR-TG--HRGFGFVTFAEEVVADRVS 157 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~--~~-~~--~~g~afV~f~~~~~a~~A~ 157 (234)
.+-+|.|+.||+.+||+++.+.++.+-.+.....+ +. .+ .-.-|+|.|.+.++...-.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~ 70 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFR 70 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence 46789999999999999988877765444333332 11 11 2356899999998877765
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.038 Score=37.52 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=28.8
Q ss_pred ceEEEEEcCHHHHHHHHh--cCceeCCcEEEEeec
Q 026724 12 GIGFITFASADSVENLMV--DTHELGGSTVVVDRA 44 (234)
Q Consensus 12 G~aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a 44 (234)
+=|+|+|+|...|-+|.+ ++.+|.|++|+|.-.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 459999999999999984 799999999999643
No 389
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.32 E-value=0.056 Score=37.60 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=26.8
Q ss_pred eEEEEEcC-HHHHHHHHh----cCceeCCcEEEEeecc
Q 026724 13 IGFITFAS-ADSVENLMV----DTHELGGSTVVVDRAT 45 (234)
Q Consensus 13 ~aFV~F~~-~e~A~~Al~----~~~~i~gr~i~v~~a~ 45 (234)
.|||.|.+ .++|.+|+. ++..|.+..++++...
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 49999999 889999994 2568899888887654
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.65 E-value=1.1 Score=38.96 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHh
Q 026724 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSR 158 (234)
Q Consensus 100 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 158 (234)
....++|+ +|..+...+|.++|+.||.| +|.++.+ ..|||.|.+.+.|..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd----t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS----SEEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC----CeEEEEECCHHHHHHHHH
Confidence 34567776 89999999999999999954 5555543 479999999999998874
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=84.28 E-value=1.2 Score=31.09 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=29.8
Q ss_pred cceEEEEEcCHHHHHHHH-hcCceeCCcEEEEeecc
Q 026724 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRAT 45 (234)
Q Consensus 11 rG~aFV~F~~~e~A~~Al-~~~~~i~gr~i~v~~a~ 45 (234)
..+-.|+|.+..+|++|| +|+..|.|.-|-|....
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 457799999999999999 58999999887777654
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.37 E-value=1.9 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=28.9
Q ss_pred EEEEEcCHHHHHHHHh--cCceeCCcEEEEeeccCC
Q 026724 14 GFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (234)
Q Consensus 14 aFV~F~~~e~A~~Al~--~~~~i~gr~i~v~~a~~~ 47 (234)
.-|.|.++++|.+|-. .+..+.|+.++|.++.+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4699999999999995 456899999999998743
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=77.91 E-value=2.5 Score=29.02 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.4
Q ss_pred ccceEEEEEcCHHHHHHHHh-cCceeCC-cEEEEeec
Q 026724 10 HRGIGFITFASADSVENLMV-DTHELGG-STVVVDRA 44 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~-~~~~i~g-r~i~v~~a 44 (234)
...+-.|.|.+..+|++||. |+..|++ -.|-|...
T Consensus 58 ~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 58 TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 34678999999999999994 7888875 55666554
No 394
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.07 E-value=8.3 Score=28.23 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=38.2
Q ss_pred CEEEEeCCCC-C--------CCHHHHHHHH--hhcCceeEEEeecCCCCcceEEEEEcCh-HHHHHHH
Q 026724 102 KKIFVGRLPQ-E--------ATAEDLRRYF--SRFGRILDVYVPKRTGHRGFGFVTFAEE-VVADRVS 157 (234)
Q Consensus 102 ~~l~v~nl~~-~--------~~~~~l~~~f--~~~G~v~~~~~~~~~~~~g~afV~f~~~-~~a~~A~ 157 (234)
..+.|-|+|. . ....+|++.| +.|.++....+....++.|++.|.|.+. .--..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 3566778886 2 3457899977 9999877555544445889999999864 3333443
No 395
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=71.06 E-value=18 Score=23.29 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCceeEEEeecCCCCcceEEEEEcChHHHHHHHhcCC---------ccCCeEeE
Q 026724 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFAEEVVADRVSRRSH---------EICGQQVA 169 (234)
Q Consensus 99 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~---------~~~g~~i~ 169 (234)
...+-|-|-|+|..+-..++.-.....|---.|..+ -|-|.+.|.+.++..-|+++.. ++.|.-..
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 356778889999999999888777778876677765 3679999999998888874322 45565555
Q ss_pred EEeCCC
Q 026724 170 IDSATP 175 (234)
Q Consensus 170 v~~a~~ 175 (234)
|--..|
T Consensus 85 vistip 90 (129)
T 4eyt_A 85 VISTIP 90 (129)
T ss_dssp EECCCC
T ss_pred eeecCC
Confidence 543333
No 396
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=54.55 E-value=11 Score=18.48 Aligned_cols=10 Identities=60% Similarity=0.956 Sum_probs=6.4
Q ss_pred CCCCCCCCCC
Q 026724 225 SRGDWRYRPY 234 (234)
Q Consensus 225 ~~~~~r~~py 234 (234)
.|.+-|-|||
T Consensus 20 ~R~drr~rpy 29 (29)
T 4fdd_B 20 HRQDRRERPY 29 (29)
T ss_pred chhhcccCCC
Confidence 3455577887
No 397
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=45.91 E-value=4.2 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCceeEEEeecCCCCcceEEEEEc
Q 026724 116 EDLRRYFSRFGRILDVYVPKRTGHRGFGFVTFA 148 (234)
Q Consensus 116 ~~l~~~f~~~G~v~~~~~~~~~~~~g~afV~f~ 148 (234)
+|+.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-----CCCeeEEeeC
Confidence 456666777777665444 4899999976
No 398
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=40.04 E-value=6 Score=32.65 Aligned_cols=12 Identities=25% Similarity=0.074 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHh
Q 026724 112 EATAEDLRRYFS 123 (234)
Q Consensus 112 ~~~~~~l~~~f~ 123 (234)
.+++++|+++..
T Consensus 228 ~vt~~~l~~i~~ 239 (358)
T 2pk2_A 228 TVTLELLDELTH 239 (358)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 345555555443
No 399
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=38.18 E-value=60 Score=20.10 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=17.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcC
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFG 126 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G 126 (234)
-.+|| |.++++++++....++|-
T Consensus 47 E~m~I--l~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 47 EVNIV--LNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHHH
T ss_pred EEEEE--ECCCCCHHHHHHHHHHHH
Confidence 35777 678899999888887763
No 400
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.43 E-value=38 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=25.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
.-+.|+|||+.++...|..++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46789999999999999999987 666555443
No 401
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=31.95 E-value=19 Score=21.71 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=9.1
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (67)
T 3cam_A 11 DAKGFGFITPDE 22 (67)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 468999998543
No 402
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=31.07 E-value=20 Score=21.48 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=9.0
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (66)
T 1c9o_A 11 NEKGYGFIEVEG 22 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 368999997553
No 403
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=29.83 E-value=21 Score=21.88 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.0
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T 3a0j_A 11 AEKGYGFIEREG 22 (73)
T ss_dssp TTTTEEEEECTT
T ss_pred CCCCEEEEecCC
Confidence 368999997553
No 404
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=29.45 E-value=23 Score=22.82 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.1
Q ss_pred CccceEEEEE
Q 026724 9 AHRGIGFITF 18 (234)
Q Consensus 9 ~srG~aFV~F 18 (234)
..|||+||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 4689999974
No 405
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=29.27 E-value=25 Score=27.71 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=25.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEee
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
..+.|+|||+.++...|..+++....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765556555444
No 406
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.23 E-value=22 Score=22.22 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.7
Q ss_pred CccceEEEEEc
Q 026724 9 AHRGIGFITFA 19 (234)
Q Consensus 9 ~srG~aFV~F~ 19 (234)
..|||+||+=.
T Consensus 18 ~~kGfGFI~~~ 28 (79)
T 1h95_A 18 VRNGYGFINRN 28 (79)
T ss_dssp TTTTEEEEEEG
T ss_pred CCCCcEEEecC
Confidence 36899999854
No 407
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.17 E-value=22 Score=21.25 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=9.2
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 10 ~~kGfGFI~~~~ 21 (66)
T 1g6p_A 10 SKKGYGFITKDE 21 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 368999998653
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.87 E-value=37 Score=20.44 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=13.4
Q ss_pred CceeEEEeecCCCCcceEEEEEcCh
Q 026724 126 GRILDVYVPKRTGHRGFGFVTFAEE 150 (234)
Q Consensus 126 G~v~~~~~~~~~~~~g~afV~f~~~ 150 (234)
|.|..|.. .+..|+|.|+|.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 45555543 367899999874
No 409
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=27.03 E-value=25 Score=21.37 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.2
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999997654
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.74 E-value=37 Score=22.68 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.1
Q ss_pred CCCccceEEEEEcCHHHHHHH
Q 026724 7 SKAHRGIGFITFASADSVENL 27 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~A 27 (234)
.|+|.|||.| |.|.+.|.+.
T Consensus 70 ~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 70 SYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CSEEEEEEEE-ESSHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 4788999966 7788777654
No 411
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=26.73 E-value=86 Score=20.34 Aligned_cols=24 Identities=4% Similarity=0.010 Sum_probs=17.8
Q ss_pred eEEEEEcCHHHHHHHHhcCceeCC
Q 026724 13 IGFITFASADSVENLMVDTHELGG 36 (234)
Q Consensus 13 ~aFV~F~~~e~A~~Al~~~~~i~g 36 (234)
|.++.|..+.++.+-|+....|+.
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e 30 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRD 30 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCT
T ss_pred EEEEEeecChhHHHHHHHHhccch
Confidence 789999998888888864444443
No 412
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=25.94 E-value=33 Score=21.07 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.6
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..||||||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999998765
No 413
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=25.92 E-value=34 Score=22.58 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=14.8
Q ss_pred CCCccceEEEEEcCHHHHHHHH
Q 026724 7 SKAHRGIGFITFASADSVENLM 28 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~Al 28 (234)
.|+|.|||.| |.|.+.|.+.-
T Consensus 61 ~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 61 MQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSEEEEEEEE-CSCHHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhhC
Confidence 4688889866 77777766543
No 414
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=25.61 E-value=56 Score=25.16 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=23.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEEEe
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 133 (234)
.-+.|+|||+.++...|..+++..-.+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999988888875444544433
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.38 E-value=65 Score=20.57 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.7
Q ss_pred ccceEEEEEcCHHHHHHHHhc
Q 026724 10 HRGIGFITFASADSVENLMVD 30 (234)
Q Consensus 10 srG~aFV~F~~~e~A~~Al~~ 30 (234)
-.||-||++...++...+|.+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTT
T ss_pred cCCEEEEEEecchhHHHHHHC
Confidence 689999999999999888864
No 416
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.05 E-value=36 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=14.3
Q ss_pred CCCccceEEEEEcCHHHHHHH
Q 026724 7 SKAHRGIGFITFASADSVENL 27 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~A 27 (234)
.|+|.|||.| |.|.+.|.+.
T Consensus 61 ~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 61 KLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp SSEEEEEEEE-CSCHHHHHHS
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 4688899966 7777776653
No 417
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.48 E-value=31 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=12.5
Q ss_pred CCCccceEEEEEcCHHHHHHH
Q 026724 7 SKAHRGIGFITFASADSVENL 27 (234)
Q Consensus 7 tg~srG~aFV~F~~~e~A~~A 27 (234)
.++|.|||.| |.|.+.|.+.
T Consensus 62 ~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 3678888866 5555555443
No 418
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=24.46 E-value=37 Score=20.87 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=9.5
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..||||||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999998754
No 419
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.87 E-value=31 Score=22.04 Aligned_cols=9 Identities=44% Similarity=0.696 Sum_probs=7.4
Q ss_pred cceEEEEEc
Q 026724 11 RGIGFITFA 19 (234)
Q Consensus 11 rG~aFV~F~ 19 (234)
|||+||+=.
T Consensus 28 kGfGFI~~d 36 (88)
T 2yty_A 28 DNFGFIETA 36 (88)
T ss_dssp SSEEEEECS
T ss_pred CCccEEecC
Confidence 799999754
No 420
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=22.92 E-value=33 Score=22.37 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.5
Q ss_pred ccceEEEEEcC
Q 026724 10 HRGIGFITFAS 20 (234)
Q Consensus 10 srG~aFV~F~~ 20 (234)
.|||+||+=.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 58999997543
No 421
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.55 E-value=28 Score=27.04 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCceeEEEee
Q 026724 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (234)
Q Consensus 104 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~ 134 (234)
..|+|||+.++...|..+++....+..+.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4799999999999999999876666555444
No 422
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.42 E-value=55 Score=25.11 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=23.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCceeEE
Q 026724 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDV 131 (234)
Q Consensus 102 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~ 131 (234)
.-+.|+|||+.++...|..+++....+...
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 357899999999999999988765444443
No 423
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=22.41 E-value=39 Score=23.94 Aligned_cols=12 Identities=50% Similarity=0.708 Sum_probs=9.7
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..||||||+-.+
T Consensus 72 ~~KGfGFI~~dd 83 (147)
T 3aqq_A 72 RSKGHGFITPAD 83 (147)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEeccCC
Confidence 368999998764
No 424
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.29 E-value=57 Score=20.23 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=13.6
Q ss_pred CceeEEEeecCCCCcceEEEEEcCh
Q 026724 126 GRILDVYVPKRTGHRGFGFVTFAEE 150 (234)
Q Consensus 126 G~v~~~~~~~~~~~~g~afV~f~~~ 150 (234)
|.|..|.. .+..|+|.|+|.
T Consensus 45 GTI~kV~~-----~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDS-----AREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEecc-----CCCEEEEEEcCC
Confidence 55655544 367899999874
No 425
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.03 E-value=1.6e+02 Score=18.65 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=36.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhh-cC-ceeEEEeecCCCCcceEEEEEcChHHHHHH
Q 026724 103 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKRTGHRGFGFVTFAEEVVADRV 156 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A 156 (234)
..|+--.+...+..+|++.++. |+ .|..|..+.......-|+|++....+|...
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dv 79 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEV 79 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHH
Confidence 3455567889999999999976 55 456665552111234599999877666554
No 426
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.06 E-value=85 Score=20.75 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=22.2
Q ss_pred CccceEEEEEcCHHHHHHHHhcCceeC
Q 026724 9 AHRGIGFITFASADSVENLMVDTHELG 35 (234)
Q Consensus 9 ~srG~aFV~F~~~e~A~~Al~~~~~i~ 35 (234)
..|||=|||=.+..++..|+.....+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 469999999999999999997644343
No 427
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.69 E-value=79 Score=25.86 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhh
Q 026724 103 KIFVGRLPQEATAEDLRRYFSR 124 (234)
Q Consensus 103 ~l~v~nl~~~~~~~~l~~~f~~ 124 (234)
-+.|+|||++++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
No 428
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=26.12 E-value=21 Score=21.67 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.1
Q ss_pred CccceEEEEEcC
Q 026724 9 AHRGIGFITFAS 20 (234)
Q Consensus 9 ~srG~aFV~F~~ 20 (234)
..|||+||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T 2lss_A 14 STKNFGFIEQDN 25 (70)
Confidence 368999997554
No 429
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=20.28 E-value=29 Score=21.64 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.5
Q ss_pred ccceEEEEEcC
Q 026724 10 HRGIGFITFAS 20 (234)
Q Consensus 10 srG~aFV~F~~ 20 (234)
.|||+||+-.+
T Consensus 17 ~KGfGFI~~dd 27 (79)
T 2ytv_A 17 KDQFGFINYEV 27 (79)
T ss_dssp CSSEEEESCCC
T ss_pred cccceeEeCCC
Confidence 58999997553
Done!