Citrus Sinensis ID: 026725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGTF
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccHHccccccccccEEccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEcccHHHHHHcccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccccEEcccccHHHccccccccEEEEccccccccccHcccccccEEEEEccccccHccccEccccccccccccccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEEccHHHHHccccccHHHHHHcccccccc
Coil and Loop (DISEMBL)
MEKVVAVAVgatrpaicspslaevdfrtsvkmsgffnvsrlrslqPIKALEESATASVVQESaaisgnnlcqnstvakstnilwhknsvdkRDRQQLLQQKGCVIwitglsgsgksTLACALSQALHwrgkltyildgdncrhglnrdlsfkaeDRVENIRRIGEVAKLFADAGVICIACLispyrkdrdacrsmlpegdfievfmdvplqvceardpkglYKLAREGKVKGTF
Flexible Loop (DISEMBL)
MEKVVAVAvgatrpaicspslaevDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRdlsfkaedrVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVceardpkglyklaregkvkgtf
Low Complexity Region (SEG)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGTF
Disordered region (IsUnstruct)
****VAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKA**************AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK***********
Disordered Region (DISOPRED)
**KVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSV********LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG**
Disordered Region (DISEMBL)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGTF
Disordered Region (DISPRO)
*EKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
O49204	312	Adenylyl-sulfate kinase,	N/A	no	0.957	0.717	0.590	1e-78
O49196	293	Adenylyl-sulfate kinase 2	yes	no	0.965	0.771	0.614	1e-76
Q43295	276	Adenylyl-sulfate kinase 1	no	no	0.679	0.576	0.830	4e-76
Q97MT8	200	Adenylyl-sulfate kinase O	yes	no	0.653	0.765	0.584	2e-52
O06735	199	Probable adenylyl-sulfate	yes	no	0.666	0.783	0.557	2e-51
A1U3X8	199	Adenylyl-sulfate kinase O	yes	no	0.649	0.763	0.598	1e-50
A5N960	199	Adenylyl-sulfate kinase O	yes	no	0.658	0.773	0.587	2e-50
Q8ZBP3	213	Adenylyl-sulfate kinase O	yes	no	0.679	0.746	0.578	2e-50
Q4L9E6	199	Adenylyl-sulfate kinase O	yes	no	0.666	0.783	0.576	9e-50
Q87SX6	205	Adenylyl-sulfate kinase O	yes	no	0.670	0.765	0.579	3e-49

>sp|O49204|KAPS_CATRO Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1

 Score =  292 bits (748), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/264 (59%), Positives = 177/264 (67%), Gaps = 40/264 (15%)

Query: 9   VGATRPAICSPSLAEVDF---------RTSVKMSGFFNV-------SRLRSLQPIKALEE 52
           +G+ +  + S  L E DF          +SVK+   F          +L  L PIKA E 
Sbjct: 2   IGSVKRPVVSCVLPEFDFTESTGLGKKSSSVKLPVNFGAFGSGGGEVKLGFLAPIKATEG 61

Query: 53  SATASV------------------------VQESAAISGNNLCQNSTVAKSTNILWHKNS 88
           S T+S                         +       G  + Q +TV  STNILWHK +
Sbjct: 62  SKTSSFQVNGKVDNFRHLQPSDCNSNSDSSLNNCNGFPGKKILQTTTVGNSTNILWHKCA 121

Query: 89  VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
           V+K +RQ+ LQQ+GCVIWITGLSGSGKSTLACALS+ LH +GKLTYILDGDN RHGLN D
Sbjct: 122 VEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSD 181

Query: 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
           LSFKAEDR ENIRRIGEVAKLFADAGVICIA LISPYRK  DACRS+LPEGDFIEVFMDV
Sbjct: 182 LSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDV 241

Query: 209 PLQVCEARDPKGLYKLAREGKVKG 232
           PL+VCEARDPKGLYKLAR GK+KG
Sbjct: 242 PLKVCEARDPKGLYKLARAGKIKG 265

Catalyzes the synthesis of activated sulfate.
Catharanthus roseus (taxid: 4058)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 5

>sp|O49196|KAP2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=AKN2 PE=2 SV=1

 Score =  286 bits (731), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/244 (61%), Positives = 178/244 (72%), Gaps = 18/244 (7%)

Query: 6   AVAVGATRPAI-CS-PSLAEVDFRTSVKMSGFFN-------------VSRLRSLQPIKAL 50
            +A+ A+RP++ CS P L   D        GF               V+   S  PI A+
Sbjct: 3   GLAIRASRPSVFCSIPGLGG-DSHRKPPSDGFLKLPASSIPADSRKLVANSTSFHPISAV 61

Query: 51  EESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWIT 108
             SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQQLLQQKGCV+WIT
Sbjct: 62  NVSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQQLLQQKGCVVWIT 121

Query: 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK 168
           GLSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE R ENIRRIGEVAK
Sbjct: 122 GLSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEHRTENIRRIGEVAK 181

Query: 169 LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG 228
           LFAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+RDPKGLYKLAR G
Sbjct: 182 LFADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCESRDPKGLYKLARAG 241

Query: 229 KVKG 232
           K+KG
Sbjct: 242 KIKG 245

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q43295|KAP1_ARATH Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=1 SV=1

 Score =  284 bits (726), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 132/159 (83%), Positives = 144/159 (90%)

Query: 74  STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct: 73  STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct: 133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query: 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KG
Sbjct: 193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 231

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q97MT8|CYSC_CLOAB Adenylyl-sulfate kinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=cysC PE=3 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 123/154 (79%), Gaps = 1/154 (0%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           KSTN++W +  + +++R+++L+QKG V+W TGLSGSGKST+A AL + L+  G LTY+LD
Sbjct: 5   KSTNVVWQETKIKRQNREKMLKQKGAVLWFTGLSGSGKSTVASALEKKLYEMGYLTYLLD 64

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R+GLN DL FK+EDR ENIRR+ EVAKLFADAG+I I   ISP+ +DR+  R +L 
Sbjct: 65  GDNLRYGLNSDLGFKSEDRTENIRRVSEVAKLFADAGIITITTFISPFIEDRNNARKLLG 124

Query: 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           + DF+EV++D P++VCE RDPKG+YK AR G++K
Sbjct: 125 K-DFVEVYIDCPIEVCEKRDPKGIYKKARNGEIK 157

Catalyzes the synthesis of activated sulfate.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O06735|CYSC2_BACSU Probable adenylyl-sulfate kinase OS=Bacillus subtilis (strain 168) GN=yisZ PE=3 SV=2

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 116/156 (74%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           +  + NI+WH  ++ K DRQ L   K CV+W TGLSGSGKS LA A+ + L+ +G  +Y+
Sbjct: 1   MTHNPNIIWHPAAISKSDRQSLNGHKSCVLWFTGLSGSGKSVLANAVDEKLYRKGIQSYV 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLN+DL F+  DR+ENIRRIGEVAKLF D+G + +   ISP+R+DRD  R++
Sbjct: 61  LDGDNIRHGLNKDLGFQTGDRIENIRRIGEVAKLFVDSGQMILTAFISPFREDRDMVRAL 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
            P+G+F E+++  PL VCE RDPKGLYK AR G++K
Sbjct: 121 FPKGEFFEIYVKCPLHVCEQRDPKGLYKKARNGEIK 156

Catalyzes the synthesis of activated sulfate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A1U3X8|CYSC_MARAV Adenylyl-sulfate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=cysC PE=3 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 113/152 (74%)

Query: 80  TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           +NI+WH + V + +R     QK C++W TGLSGSGKST+A AL  ALH RG  T++LDGD
Sbjct: 2   SNIVWHDHKVTRAERSANKNQKPCLLWFTGLSGSGKSTIANALDVALHERGYHTFLLDGD 61

Query: 140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
           N RHGL  DL F  +DRVENIRR+GEV KLFADAG+I ++  ISP+  DR   R + P G
Sbjct: 62  NVRHGLCSDLGFSDDDRVENIRRVGEVCKLFADAGLIVMSAFISPFTSDRRMVRKLFPAG 121

Query: 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           +FIEVFMD PL+ CE+RDPKGLYK AR G++K
Sbjct: 122 EFIEVFMDAPLETCESRDPKGLYKKARAGEIK 153

Catalyzes the synthesis of activated sulfate.

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A5N960|CYSC_CLOK5 Adenylyl-sulfate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cysC PE=3 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
            KSTNI WH+  VD+  R++LL Q G +IW TGLSGSGKST+A  L   L+  G+LTY+L
Sbjct: 3   VKSTNISWHRALVDREMREKLLGQNGILIWFTGLSGSGKSTIASELEMRLYNMGRLTYLL 62

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGDN RHGLN +L F  EDR+ENIRR  EV KLF D+G+I I+  ISP++ DRD  R +L
Sbjct: 63  DGDNVRHGLNSNLGFTKEDRIENIRRTAEVCKLFVDSGIITISTFISPFKDDRDKVRKLL 122

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
            + DF+EV++D PL+VCE+RDPKG+YK AR G++K
Sbjct: 123 GK-DFVEVYVDCPLEVCESRDPKGIYKKARNGEIK 156

Catalyzes the synthesis of activated sulfate.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8ZBP3|CYSC_YERPE Adenylyl-sulfate kinase OS=Yersinia pestis GN=cysC PE=3 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 114/159 (71%)

Query: 73  NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132
             T +   NI+WH +++ ++DR+Q    +G V+W TGLSGSGKSTLA AL QAL  RG  
Sbjct: 11  QETRSDDENIVWHPHAITRQDREQQHGHQGVVLWFTGLSGSGKSTLAGALEQALFARGVS 70

Query: 133 TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDAC 192
           TY+LDGDN RHGL RDL F   DR ENIRR+GEVAKL  DAG++ +   ISP+R +R   
Sbjct: 71  TYLLDGDNVRHGLCRDLGFSDADRRENIRRVGEVAKLMVDAGLVVLTAFISPHRAERKMV 130

Query: 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           + ML  G FIEVF+D PL +CEARDPKGLYK AR G++K
Sbjct: 131 QDMLASGQFIEVFVDTPLAICEARDPKGLYKKARAGELK 169

Catalyzes the synthesis of activated sulfate.

Yersinia pestis (taxid: 632)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q4L9E6|CYSC_STAHJ Adenylyl-sulfate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=cysC PE=3 SV=1

 Score =  196 bits (499), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 111/156 (71%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           +++S+NI WH + V K DRQQ    K  VIW TGLSGSGKST++  L +AL    K +Y 
Sbjct: 1   MSQSSNITWHDSEVTKSDRQQQNGHKSVVIWFTGLSGSGKSTVSVELEKALFQLEKHSYR 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLN++L F  EDR ENIRRIGEV+KL  DAG I I   ISPYR DRD  R +
Sbjct: 61  LDGDNVRHGLNKNLGFSPEDRKENIRRIGEVSKLLVDAGTIAITAFISPYRADRDEVREI 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           L +G+FIEV+ +  ++ CE RDPKGLYK AR G++K
Sbjct: 121 LEDGEFIEVYTECSVEACEQRDPKGLYKKARSGEIK 156

Catalyzes the synthesis of activated sulfate.

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q87SX6|CYSC_VIBPA Adenylyl-sulfate kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=cysC PE=3 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 116/157 (73%)

Query: 74  STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
            T  K  NI+WH+++VDK+ R +L +QK  V+W TGLSG+GKST+A AL   L   G  T
Sbjct: 4   ETPVKDENIVWHQHTVDKQFRAELKKQKPAVLWFTGLSGAGKSTVAGALENRLAELGYHT 63

Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           Y+LDGDN RHGL  DL F  +DR ENIRRIGE+AKL ADAG+I ++  ISP+R +R   R
Sbjct: 64  YLLDGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMADAGLIVLSAFISPHRAERQLVR 123

Query: 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230
            +LPEG+FIEVF++  L+VCE RDPKGLYK AR G++
Sbjct: 124 DLLPEGEFIEVFVNASLEVCEGRDPKGLYKKARAGEI 160

Catalyzes the synthesis of activated sulfate.

Vibrio parahaemolyticus (taxid: 670)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
357476475	306	Adenylyl-sulfate kinase [Medicago trunca	0.880	0.673	0.675	2e-77
7387809	312	RecName: Full=Adenylyl-sulfate kinase, c	0.957	0.717	0.590	7e-77
359807000	296	uncharacterized protein LOC100786331 [Gl	0.935	0.739	0.633	1e-76
255568599	281	adenylsulfate kinase, putative [Ricinus	0.786	0.654	0.729	2e-76
356511963	300	PREDICTED: adenylyl-sulfate kinase, chlo	0.944	0.736	0.619	4e-76
255583305	288	adenylsulfate kinase, putative [Ricinus	0.884	0.718	0.668	5e-76
296087318	684	unnamed protein product [Vitis vinifera]	0.782	0.267	0.711	1e-75
357482591	362	Adenylyl-sulfate kinase [Medicago trunca	0.756	0.488	0.762	3e-75
225428995	308	PREDICTED: adenylyl-sulfate kinase 1, ch	0.876	0.665	0.649	5e-75
15236087	293	Adenylyl-sulfate kinase 2 [Arabidopsis t	0.965	0.771	0.614	6e-75

>gi|357476475|ref|XP_003608523.1| Adenylyl-sulfate kinase [Medicago truncatula] gi|355509578|gb|AES90720.1| Adenylyl-sulfate kinase [Medicago truncatula]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/216 (67%), Positives = 170/216 (78%), Gaps = 10/216 (4%)

Query: 27  RTSVKMSGFFNVSRLR--SLQPIKALEESATASVVQESAAISGNNLCQN--------STV 76
           R+   ++ F++ +RL+  +L+PI+A  +S ++     S + S  N   N          +
Sbjct: 44  RSQRSLALFYDRARLKAYTLKPIQAKNDSESSCSDNNSTSFSAVNETGNLVKISARCQIL 103

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             STNILWH   V K DRQQLLQQKGCVIW+TGLSGSGKSTLACALSQ+LH RGKLTYIL
Sbjct: 104 GNSTNILWHDCPVQKCDRQQLLQQKGCVIWLTGLSGSGKSTLACALSQSLHSRGKLTYIL 163

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGDN RHGLNRDLSF+AEDR ENIRRIGEVAKLFADAG+ICI  LISPY+KDRDACR++L
Sbjct: 164 DGDNIRHGLNRDLSFRAEDRSENIRRIGEVAKLFADAGLICITSLISPYQKDRDACRALL 223

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           PEGDFIEVF+DVPL VCEARDPKGLYKLAR GK+KG
Sbjct: 224 PEGDFIEVFIDVPLHVCEARDPKGLYKLARAGKIKG 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7387809|sp|O49204.1|KAPS_CATRO RecName: Full=Adenylyl-sulfate kinase, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor gi|2832300|gb|AAC31145.1| adenosine-5'-phosphosulfate-kinase [Catharanthus roseus]

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 156/264 (59%), Positives = 177/264 (67%), Gaps = 40/264 (15%)

Query: 9   VGATRPAICSPSLAEVDF---------RTSVKMSGFFNV-------SRLRSLQPIKALEE 52
           +G+ +  + S  L E DF          +SVK+   F          +L  L PIKA E 
Sbjct: 2   IGSVKRPVVSCVLPEFDFTESTGLGKKSSSVKLPVNFGAFGSGGGEVKLGFLAPIKATEG 61

Query: 53  SATASV------------------------VQESAAISGNNLCQNSTVAKSTNILWHKNS 88
           S T+S                         +       G  + Q +TV  STNILWHK +
Sbjct: 62  SKTSSFQVNGKVDNFRHLQPSDCNSNSDSSLNNCNGFPGKKILQTTTVGNSTNILWHKCA 121

Query: 89  VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
           V+K +RQ+ LQQ+GCVIWITGLSGSGKSTLACALS+ LH +GKLTYILDGDN RHGLN D
Sbjct: 122 VEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSD 181

Query: 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
           LSFKAEDR ENIRRIGEVAKLFADAGVICIA LISPYRK  DACRS+LPEGDFIEVFMDV
Sbjct: 182 LSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDV 241

Query: 209 PLQVCEARDPKGLYKLAREGKVKG 232
           PL+VCEARDPKGLYKLAR GK+KG
Sbjct: 242 PLKVCEARDPKGLYKLARAGKIKG 265

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807000|ref|NP_001241077.1| uncharacterized protein LOC100786331 [Glycine max] gi|255646419|gb|ACU23688.1| unknown [Glycine max]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/229 (63%), Positives = 172/229 (75%), Gaps = 10/229 (4%)

Query: 4   VVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESA 63
           + AV +   R ++  P +A+ D   S+   G           P     +    + + +S 
Sbjct: 31  INAVGLSRGRKSLLKPIMAKEDHGASLIDDG----------NPKCQGHQVNKPNGINQST 80

Query: 64  AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
           A+SG +L + S +  S NILWH+  + K DRQQLLQQKGCVIW+TGLSGSGKSTLACALS
Sbjct: 81  ALSGKSLTEMSNIGNSMNILWHECPIQKLDRQQLLQQKGCVIWLTGLSGSGKSTLACALS 140

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           ++LH +GKLTYILDGDN RHGLNRDLSF+AEDR ENIRRIGEV+KL ADAGVICIA LIS
Sbjct: 141 RSLHSKGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVSKLLADAGVICIASLIS 200

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           PYRKDRDACR++LPEGDFIEVF+DVPL VCEARDPKGLYKLAR GK+KG
Sbjct: 201 PYRKDRDACRALLPEGDFIEVFIDVPLDVCEARDPKGLYKLARAGKIKG 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568599|ref|XP_002525273.1| adenylsulfate kinase, putative [Ricinus communis] gi|223535431|gb|EEF37101.1| adenylsulfate kinase, putative [Ricinus communis]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/196 (72%), Positives = 165/196 (84%), Gaps = 12/196 (6%)

Query: 37  NVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQ 96
           ++ RLRS   +KA++ESA +         SG +L     ++ + NI+WHK+ V+K +RQ+
Sbjct: 51  DLKRLRSSPLVKAMDESAIS---------SGKDL---QMMSCNGNIVWHKSPVEKCNRQE 98

Query: 97  LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156
           LLQQ+GCVIWITGLSGSGKSTLACALSQ LH +GKLTYILDGDN RHGLNRDL FKAEDR
Sbjct: 99  LLQQQGCVIWITGLSGSGKSTLACALSQGLHSKGKLTYILDGDNVRHGLNRDLGFKAEDR 158

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            ENIRR+GEVAKLFADAGVICIACLISPYRKDRDACR++LP+GDFIEVFMDVPLQVCE R
Sbjct: 159 AENIRRVGEVAKLFADAGVICIACLISPYRKDRDACRALLPDGDFIEVFMDVPLQVCETR 218

Query: 217 DPKGLYKLAREGKVKG 232
           DPKGLYKLAR GK+KG
Sbjct: 219 DPKGLYKLARAGKIKG 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511963|ref|XP_003524691.1| PREDICTED: adenylyl-sulfate kinase, chloroplastic-like [Glycine max]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 180/242 (74%), Gaps = 21/242 (8%)

Query: 10  GATRPAICSPSLAEVDFR----TSVKMSGFFN-----VSRLRSLQPIKALEESATAS--- 57
           G  R  +C PS A           + ++G        V R RS +PIK ++E+AT S   
Sbjct: 14  GVFRNIVCGPSPAAETLGFPRLRGISVAGLHRSHRNLVLRARS-KPIK-VKENATVSASL 71

Query: 58  -------VVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGL 110
                  +  +  + +G NL Q S VA STNI+WH   + K+DRQQLLQQKGCVIW+TGL
Sbjct: 72  IDDWFKPITAKEDSDAGKNLSQMSNVANSTNIMWHDCPIQKQDRQQLLQQKGCVIWLTGL 131

Query: 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF 170
           SGSGKST+ACALS++LH +GKL+YILDGDN RHGLN+DLSF+AEDR ENIRRIGEVAKLF
Sbjct: 132 SGSGKSTIACALSRSLHSKGKLSYILDGDNIRHGLNQDLSFRAEDRSENIRRIGEVAKLF 191

Query: 171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230
           ADAGVICI  LISPY+KDRDACR+++P+GDFIEVF+DVPL VCEARDPKGLYKLAR GK+
Sbjct: 192 ADAGVICITSLISPYQKDRDACRALMPKGDFIEVFIDVPLHVCEARDPKGLYKLARAGKI 251

Query: 231 KG 232
           KG
Sbjct: 252 KG 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583305|ref|XP_002532415.1| adenylsulfate kinase, putative [Ricinus communis] gi|223527864|gb|EEF29956.1| adenylsulfate kinase, putative [Ricinus communis]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 143/214 (66%), Positives = 167/214 (78%), Gaps = 7/214 (3%)

Query: 20  SLAEVDFRTSVKMSGFFNVSRLRSLQP-IKALEESATASVVQESAAISGNNLCQNSTVAK 78
           ++A    + +VKM+       + +L P +  LE+ + A+   E +  S       S +  
Sbjct: 34  AIASGSQQQTVKMNVATTNGNVNTLIPNVPPLEKPSAANGQAEKSQSSL------SQIGN 87

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ +VDK DRQ+LL+QKGCVIWITGLSGSGKST+ACALSQ L+ RGKLTYILDG
Sbjct: 88  STNIKWHECTVDKNDRQKLLKQKGCVIWITGLSGSGKSTVACALSQMLYQRGKLTYILDG 147

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLN DLSFKAEDR ENIRR+GEV KLFADAGVICIACLISPYRKDRDACR +LP 
Sbjct: 148 DNLRHGLNNDLSFKAEDRAENIRRVGEVGKLFADAGVICIACLISPYRKDRDACRKILPN 207

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           GDFIEVFMD+PLQVCE+RDPKGLYKLAR GK+KG
Sbjct: 208 GDFIEVFMDIPLQVCESRDPKGLYKLARAGKIKG 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087318|emb|CBI33692.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 161/194 (82%), Gaps = 11/194 (5%)

Query: 39  SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLL 98
           +R R + PIKA++    A V  ++    G N         STNI+WH+ SVDK +RQ+LL
Sbjct: 455 ARSRHVTPIKAVK----AFVSGQADGAGGKN-------GMSTNIVWHECSVDKLERQRLL 503

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           QQKGCVIWITGLSGSGKSTLACALS+ALH+RG LTY+LDGDN RHGLNRDLSF+AEDR E
Sbjct: 504 QQKGCVIWITGLSGSGKSTLACALSRALHFRGNLTYVLDGDNVRHGLNRDLSFRAEDRAE 563

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIGEVAKLF+D+G+ICIA LISPYRKDRDACR+ML EG+FIEVFMD+PL+VCE RDP
Sbjct: 564 NIRRIGEVAKLFSDSGIICIASLISPYRKDRDACRAMLSEGNFIEVFMDIPLEVCEERDP 623

Query: 219 KGLYKLAREGKVKG 232
           KGLYKLAR GK++G
Sbjct: 624 KGLYKLARAGKIRG 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482591|ref|XP_003611582.1| Adenylyl-sulfate kinase [Medicago truncatula] gi|355512917|gb|AES94540.1| Adenylyl-sulfate kinase [Medicago truncatula]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/181 (76%), Positives = 154/181 (85%), Gaps = 4/181 (2%)

Query: 56  ASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGK 115
           +S +  SAA SG NL   +T   STNILWH+ S+ K DRQQLLQQKGCV+W+TGLSGSGK
Sbjct: 91  SSFIDHSAAFSGKNLSNLTTNGNSTNILWHECSIQKLDRQQLLQQKGCVVWVTGLSGSGK 150

Query: 116 STLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG----EVAKLFA 171
           STLACALS++LH RGKLTYILDGDN RHGLNRDLSF+AEDR ENIRRIG    EVAKL A
Sbjct: 151 STLACALSRSLHSRGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGELLREVAKLLA 210

Query: 172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           DAGVICI  LISPY+KDRDACR++LP+GDFIEVF+DVPL VCEARDPKGLYKLAR G +K
Sbjct: 211 DAGVICITSLISPYQKDRDACRALLPKGDFIEVFLDVPLAVCEARDPKGLYKLARAGMIK 270

Query: 232 G 232
           G
Sbjct: 271 G 271

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428995|ref|XP_002265518.1| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/217 (64%), Positives = 171/217 (78%), Gaps = 12/217 (5%)

Query: 28  TSVKMSGFFNVSRLRSLQPIKALEESAT--------ASVVQESA----AISGNNLCQNST 75
           T V+  GF++V  +  LQ     E+           + +V++S      +SG  + Q +T
Sbjct: 45  TPVRSKGFWSVVAMERLQMACVNEKVYNVGDLGKDGSDLVEKSTNGHVTVSGRTVSQLAT 104

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           +  STNI+WH   VDK +RQ+LL+QKGCVIWITGLSGSGKS++ACALSQ+L+ RGKL+YI
Sbjct: 105 IGNSTNIMWHGCPVDKVERQKLLKQKGCVIWITGLSGSGKSSVACALSQSLYSRGKLSYI 164

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR+DRDACR++
Sbjct: 165 LDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGLICIASLISPYRRDRDACRAL 224

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           +PEG FIEVFMDVPLQVCEARDPKGLYKLAR GK++G
Sbjct: 225 VPEGSFIEVFMDVPLQVCEARDPKGLYKLARAGKIQG 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236087|ref|NP_195704.1| Adenylyl-sulfate kinase 2 [Arabidopsis thaliana] gi|7387808|sp|O49196.1|KAP2_ARATH RecName: Full=Adenylyl-sulfate kinase 2, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor gi|18087563|gb|AAL58913.1|AF462823_1 AT4g39940/T5J17_110 [Arabidopsis thaliana] gi|2829133|gb|AAC39520.1| adenosine-5'-phosphosulfate-kinase [Arabidopsis thaliana] gi|4490745|emb|CAB38907.1| adenosine-5'-phosphosulfate-kinase [Arabidopsis thaliana] gi|7271049|emb|CAB80657.1| adenosine-5'-phosphosulfate-kinase [Arabidopsis thaliana] gi|20453397|gb|AAM19937.1| AT4g39940/T5J17_110 [Arabidopsis thaliana] gi|332661742|gb|AEE87142.1| Adenylyl-sulfate kinase 2 [Arabidopsis thaliana]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 150/244 (61%), Positives = 178/244 (72%), Gaps = 18/244 (7%)

Query: 6   AVAVGATRPAI-CS-PSLAEVDFRTSVKMSGFFN-------------VSRLRSLQPIKAL 50
            +A+ A+RP++ CS P L   D        GF               V+   S  PI A+
Sbjct: 3   GLAIRASRPSVFCSIPGLGG-DSHRKPPSDGFLKLPASSIPADSRKLVANSTSFHPISAV 61

Query: 51  EESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWIT 108
             SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQQLLQQKGCV+WIT
Sbjct: 62  NVSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQQLLQQKGCVVWIT 121

Query: 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK 168
           GLSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE R ENIRRIGEVAK
Sbjct: 122 GLSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEHRTENIRRIGEVAK 181

Query: 169 LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG 228
           LFAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+RDPKGLYKLAR G
Sbjct: 182 LFADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCESRDPKGLYKLARAG 241

Query: 229 KVKG 232
           K+KG
Sbjct: 242 KIKG 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2140005	293	AKN2 "APS-kinase 2" [Arabidops	0.833	0.665	0.705	1.6e-70
TAIR|locus:2046901	276	APK "APS kinase" [Arabidopsis	0.679	0.576	0.830	1.4e-69
TAIR|locus:2158626	310	APK4 "adenosine-5'-phosphosulf	0.820	0.619	0.656	8.5e-65
TAIR|locus:2079379	208	APK3 "adenosine-5'-phosphosulf	0.679	0.764	0.761	9.7e-64
TIGR_CMR|CHY_2693	197	CHY_2693 "adenylylsulfate kina	0.649	0.771	0.638	1.2e-49
UNIPROTKB|Q9KP21	215	cysC "Adenylyl-sulfate kinase"	0.662	0.720	0.561	6.4e-44
TIGR_CMR|VC_2558	215	VC_2558 "adenylylsulfate kinas	0.662	0.720	0.561	6.4e-44
UNIPROTKB|Q9NDP8	618	Ci-ASAK "ATP sulfurylase/APS k	0.658	0.249	0.566	2.2e-43
TIGR_CMR|CPS_2145	209	CPS_2145 "adenylylsulfate kina	0.675	0.755	0.550	1.5e-42
TIGR_CMR|SO_3723	205	SO_3723 "adenylylsulfate kinas	0.645	0.736	0.562	1.9e-42

TAIR|locus:2140005 AKN2 "APS-kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 139/197 (70%), Positives = 162/197 (82%)

Query:    38 VSRLRSLQPIKALEESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQ 95
             V+   S  PI A+  SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQ
Sbjct:    49 VANSTSFHPISAVNVSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQ 108

Query:    96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
             QLLQQKGCV+WITGLSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE 
Sbjct:   109 QLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEH 168

Query:   156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215
             R ENIRRIGEVAKLFAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+
Sbjct:   169 RTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCES 228

Query:   216 RDPKGLYKLAREGKVKG 232
             RDPKGLYKLAR GK+KG
Sbjct:   229 RDPKGLYKLARAGKIKG 245

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IGI

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IGI

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2046901 APK "APS kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 132/159 (83%), Positives = 144/159 (90%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct:    73 STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct:   133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
             S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KG
Sbjct:   193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 231

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IDA

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2158626 APK4 "adenosine-5'-phosphosulfate (APS) kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 134/204 (65%), Positives = 160/204 (78%)

Query:    29 SVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNS 88
             S+K+ G  +  R+   +PI A +ES + S   E+  I+G          K  NI+WH   
Sbjct:    48 SLKLRGKIH-RRMSYFRPIMAKDESIS-SRSGETKQING----------KQKNIVWHDCP 95

Query:    89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
             V K DRQ+L++QKGCVIWITGLSGSGKS+LACALS+ALH RGKL+YILDGDN RHGLN D
Sbjct:    96 VTKSDRQELIKQKGCVIWITGLSGSGKSSLACALSRALHNRGKLSYILDGDNVRHGLNSD 155

Query:   149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
             LSF+A+DR ENIRR+GEVAKLFAD+G+ICIA LISPYR +R ACR++LP+GDFIEVFMDV
Sbjct:   156 LSFEADDRAENIRRVGEVAKLFADSGIICIASLISPYRIERAACRALLPQGDFIEVFMDV 215

Query:   209 PLQVCEARDPKGLYKLAREGKVKG 232
             PL VCEARDPKGLYK AR GK+KG
Sbjct:   216 PLHVCEARDPKGLYKRARAGKIKG 239

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2079379 APK3 "adenosine-5'-phosphosulfate (APS) kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 121/159 (76%), Positives = 139/159 (87%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             STV  STNI W ++ + K +RQ+LL QKGCV+WITGLSGSGKSTLAC+LS+ L+ RGKL+
Sbjct:     2 STVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKLS 61

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             YILDGDN RHGLN+DL FKAEDRVENIRR+GEVAKLFADAG+ICIA LISPYRKDRDACR
Sbjct:    62 YILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR 121

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
              M+    FIEVFM++ LQ+CEARDPKGLYKLAR GK+KG
Sbjct:   122 EMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKG 160

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TIGR_CMR|CHY_2693 CHY_2693 "adenylylsulfate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 97/152 (63%), Positives = 117/152 (76%)

Query:    79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             + N+ WH+  +   DR++LL QKG VIW+TGLSGSGKST+A  L   L+ +GKL Y+LDG
Sbjct:     2 ANNLFWHEGKITAEDREKLLGQKGVVIWLTGLSGSGKSTIARELEAVLYRQGKLAYVLDG 61

Query:   139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
             DN R GLN+DL F  +DR ENIRRIGEVAKLF DAG+I I   ISP+R DRD  RS+LP 
Sbjct:    62 DNIRMGLNKDLGFSEKDRQENIRRIGEVAKLFVDAGIIVITAFISPFRADRDKVRSILPA 121

Query:   199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230
             G FIEVF+D PL+VCEARD KGLY+ AREGK+
Sbjct:   122 GKFIEVFVDCPLEVCEARDVKGLYQKAREGKI 153

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

UNIPROTKB|Q9KP21 cysC "Adenylyl-sulfate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/155 (56%), Positives = 113/155 (72%)

Query:    77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             AK  N++WH+++VDK  R  L QQ+  V+W TGLSG+GKST+A AL   L   G  TY+L
Sbjct:    14 AKPENVVWHRHAVDKAQRATLKQQRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLL 73

Query:   137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
             DGDN RHGL  DL F  +DR ENIRRIGE+AKL +DAG+I +   ISP+R +R   R +L
Sbjct:    74 DGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMSDAGLIVLTAFISPHRAERQMVRDLL 133

Query:   197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
             P G+F+EV+++  L VCEARDPKGLYK AR G+++
Sbjct:   134 PNGEFLEVYVNTSLDVCEARDPKGLYKKARAGEIR 168

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|VC_2558 VC_2558 "adenylylsulfate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/155 (56%), Positives = 113/155 (72%)

Query:    77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             AK  N++WH+++VDK  R  L QQ+  V+W TGLSG+GKST+A AL   L   G  TY+L
Sbjct:    14 AKPENVVWHRHAVDKAQRATLKQQRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLL 73

Query:   137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
             DGDN RHGL  DL F  +DR ENIRRIGE+AKL +DAG+I +   ISP+R +R   R +L
Sbjct:    74 DGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMSDAGLIVLTAFISPHRAERQMVRDLL 133

Query:   197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
             P G+F+EV+++  L VCEARDPKGLYK AR G+++
Sbjct:   134 PNGEFLEVYVNTSLDVCEARDPKGLYKKARAGEIR 168

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

UNIPROTKB|Q9NDP8 Ci-ASAK "ATP sulfurylase/APS kinase" [Ciona intestinalis (taxid:7719)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 90/159 (56%), Positives = 117/159 (73%)

Query:    79 STNILWHKNSVDKRDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
             S+NI++ ++ V + +R Q++ +   +GC +W TGLSG+GKSTL+  L + L  +G   Y 
Sbjct:    19 SSNIVYQQHHVSRDERGQVMGKGAFRGCTVWFTGLSGAGKSTLSMKLEEYLCSKGIPAYS 78

Query:   136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
             LDGDN RHGLN+DL F   DR ENIRRIGEVAKLFADAGV+C+   ISPYRKDR + R +
Sbjct:    79 LDGDNIRHGLNKDLGFAPADREENIRRIGEVAKLFADAGVVCLVSFISPYRKDRQSARRV 138

Query:   196 LPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
               + +  FIEVF+D PLQVCE RD KGLYK AR+G++KG
Sbjct:   139 HNKSNLPFIEVFVDTPLQVCEGRDVKGLYKKARQGQIKG 177

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

TIGR_CMR|CPS_2145 CPS_2145 "adenylylsulfate kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 87/158 (55%), Positives = 108/158 (68%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             +T  K+ N +WH   + K  R  L QQK  ++W TGLSGSGKST+A A+   L   G  +
Sbjct:     3 TTNMKTENTVWHNQQISKEQRATLKQQKPALLWYTGLSGSGKSTVANAVDALLFKLGCHS 62

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             Y+LDGDN RHGLN DL F  E R+ENIRRI EVAKLF DAG+I     ISP+  DR   +
Sbjct:    63 YLLDGDNVRHGLNGDLGFSDEARIENIRRISEVAKLFLDAGLIVSTAFISPFASDRALAK 122

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
             + L +G+FIEVF+D P+ VCE RDPKGLYK AR G++K
Sbjct:   123 AKLEDGEFIEVFIDTPISVCEQRDPKGLYKKARAGEIK 160

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|SO_3723 SO_3723 "adenylylsulfate kinase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 85/151 (56%), Positives = 111/151 (73%)

Query:    80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
             +NI+WH++SVD+  R +L  Q   ++W TGLSG+GKSTLA AL +AL   G  TY+LDGD
Sbjct:     2 SNIVWHQHSVDQAARARLKGQNPVLLWFTGLSGAGKSTLAGALERALFEAGFHTYLLDGD 61

Query:   140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
             N RHGL +DL F   DR EN+RR+GEVAKL  DAG++ ++  ISP R++RD+ R+  PEG
Sbjct:    62 NVRHGLCKDLGFSVADRDENLRRVGEVAKLMVDAGLVVLSAFISPTREERDSIRARFPEG 121

Query:   200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230
              FIEV +  PL VCE RDPKGLY  AR+G++
Sbjct:   122 QFIEVHVSTPLSVCELRDPKGLYVKARKGEI 152

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8H0A6	CYSC_SHEPA	2, ., 7, ., 1, ., 2, 5	0.5460	0.6495	0.7414	yes	no
Q07Y94	CYSC_SHEFN	2, ., 7, ., 1, ., 2, 5	0.5364	0.6452	0.7294	yes	no
Q5HL02	CYSC_STAEQ	2, ., 7, ., 1, ., 2, 5	0.5419	0.6623	0.7788	yes	no
B2VG00	CYSC_ERWT9	2, ., 7, ., 1, ., 2, 5	0.5827	0.6452	0.7512	yes	no
Q49UM5	CYSC_STAS1	2, ., 7, ., 1, ., 2, 5	0.5541	0.6709	0.7696	yes	no
Q7MPF0	CYSC_VIBVY	2, ., 7, ., 1, ., 2, 5	0.5816	0.6538	0.7391	yes	no
B7LWK5	CYSC_ESCF3	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
A1AEU4	CYSC_ECOK1	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
B9DLK2	CYSC_STACT	2, ., 7, ., 1, ., 2, 5	0.5512	0.6666	0.7839	yes	no
Q0HYA3	CYSC_SHESR	2, ., 7, ., 1, ., 2, 5	0.5629	0.6452	0.7365	yes	no
B5XV31	CYSC_KLEP3	2, ., 7, ., 1, ., 2, 5	0.5827	0.6452	0.7512	yes	no
O49196	KAP2_ARATH	2, ., 7, ., 1, ., 2, 5	0.6147	0.9658	0.7713	yes	no
A8ANW4	CYSC_CITK8	2, ., 7, ., 1, ., 2, 5	0.5695	0.6452	0.7512	yes	no
A1RGG0	CYSC_SHESW	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7365	yes	no
Q88X60	CYSC_LACPL	2, ., 7, ., 1, ., 2, 5	0.5859	0.6709	0.7584	yes	no
Q97MT8	CYSC_CLOAB	2, ., 7, ., 1, ., 2, 5	0.5844	0.6538	0.765	yes	no
A6TD42	CYSC_KLEP7	2, ., 7, ., 1, ., 2, 5	0.5827	0.6452	0.7512	yes	no
Q87SX6	CYSC_VIBPA	2, ., 7, ., 1, ., 2, 5	0.5796	0.6709	0.7658	yes	no
O06735	CYSC2_BACSU	2, ., 7, ., 1, ., 2, 5	0.5576	0.6666	0.7839	yes	no
Q8CR04	CYSC_STAES	2, ., 7, ., 1, ., 2, 5	0.5419	0.6623	0.7788	yes	no
Q4L9E6	CYSC_STAHJ	2, ., 7, ., 1, ., 2, 5	0.5769	0.6666	0.7839	yes	no
Q7VE24	CYSC_PROMA	2, ., 7, ., 1, ., 2, 5	0.5512	0.6666	0.7761	yes	no
B7MYQ5	CYSC_ECO81	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
A0KTI5	CYSC_SHESA	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7365	yes	no
A4SRG6	CYSC_AERS4	2, ., 7, ., 1, ., 2, 5	0.5855	0.6495	0.7755	yes	no
A4Y9X0	CYSC_SHEPC	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7365	yes	no
Q8EB13	CYSC_SHEON	2, ., 7, ., 1, ., 2, 5	0.5629	0.6452	0.7365	yes	no
B7MKM4	CYSC_ECO45	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
Q9KP21	CYSC_VIBCH	2, ., 7, ., 1, ., 2, 5	0.5612	0.6623	0.7209	yes	no
Q0HFM7	CYSC_SHESM	2, ., 7, ., 1, ., 2, 5	0.5496	0.6452	0.7365	yes	no
B7NT94	CYSC_ECO7I	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
B0CAX3	CYSC_ACAM1	2, ., 7, ., 1, ., 2, 5	0.5419	0.6623	0.7560	yes	no
A4WDV5	CYSC_ENT38	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
Q12QM6	CYSC_SHEDO	2, ., 7, ., 1, ., 2, 5	0.5592	0.6495	0.7414	yes	no
Q9KCT0	CYSC1_BACHD	2, ., 7, ., 1, ., 2, 5	0.5806	0.6623	0.7673	yes	no
B7UHG9	CYSC_ECO27	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
A1U3X8	CYSC_MARAV	2, ., 7, ., 1, ., 2, 5	0.5986	0.6495	0.7638	yes	no
Q8EQN3	CYSC_OCEIH	2, ., 7, ., 1, ., 2, 5	0.5882	0.6538	0.7688	yes	no
A7MJ70	CYSC_CROS8	2, ., 7, ., 1, ., 2, 5	0.5894	0.6452	0.7512	yes	no
Q8DE75	CYSC_VIBVU	2, ., 7, ., 1, ., 2, 5	0.5816	0.6538	0.7391	yes	no
Q1R7U1	CYSC_ECOUT	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no
Q8ZBP3	CYSC_YERPE	2, ., 7, ., 1, ., 2, 5	0.5786	0.6794	0.7464	yes	no
A5N960	CYSC_CLOK5	2, ., 7, ., 1, ., 2, 5	0.5870	0.6581	0.7738	yes	no
A0KP33	CYSC_AERHH	2, ., 7, ., 1, ., 2, 5	0.5921	0.6495	0.7715	yes	no
Q8FEJ2	CYSC_ECOL6	2, ., 7, ., 1, ., 2, 5	0.5562	0.6452	0.7512	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.25	0.946
3rd Layer	2.7.1	0.963

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AKN2	AKN2 (APS-kinase 2); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups; adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete ; Catalyzes the synthesis of activated sulfate (293 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	APS1	APS1 (ATP SULFURYLASE 1); sulfate adenylyltransferase (ATP); encodes ATP sulfurylase, the first [...] (463 aa)	•	•		•		•	•		0.974
	APS3	APS3; sulfate adenylyltransferase (ATP); ATP sulfurylase (465 aa)	•	•		•		•	•		0.967
	APS4	APS4; sulfate adenylyltransferase (ATP); sulfate adenylyltransferase, ATP sulfurylase (469 aa)	•	•				•	•		0.957
	At1g19920	APS2; sulfate adenylyltransferase (ATP); encodes a chloroplast form of ATP sulfurylase (476 aa)	•	•				•	•		0.957
	SOT17	SOT17 (SULFOTRANSFERASE 17); desulfoglucosinolate sulfotransferase/ sulfotransferase; encodes a [...] (346 aa)				•			•		0.932
	APK	APK (APS KINASE); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosp [...] (276 aa)			•	•	•		•	•	0.903
	SOT16	SOT16 (SULFOTRANSFERASE 16); desulfoglucosinolate sulfotransferase/ sulfotransferase; encodes a [...] (338 aa)				•			•		0.831
	CB5-C	CB5-C (CYTOCHROME B5 ISOFORM C); heme binding; member of Cytochromes b5 (132 aa)				•					0.829
	SOT18	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18); 3-methylthiopropyl-desulfoglucosinolate sulf [...] (350 aa)				•			•		0.813
	AT2G30530	unknown protein; unknown protein; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plan [...] (371 aa)					•				0.802

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
PRK03846	198	PRK03846, PRK03846, adenylylsulfate kinase; Provis	2e-90
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	8e-88
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	2e-82
pfam01583	157	pfam01583, APS_kinase, Adenylylsulphate kinase	8e-82
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	2e-78
TIGR00455	184	TIGR00455, apsK, adenylylsulfate kinase (apsK)	2e-75
PRK00889	175	PRK00889, PRK00889, adenylylsulfate kinase; Provis	6e-50
PRK05537	568	PRK05537, PRK05537, bifunctional sulfate adenylylt	7e-44
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	3e-24
pfam13671	143	pfam13671, AAA_33, AAA domain	2e-07
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	8e-07
pfam13207	114	pfam13207, AAA_17, AAA domain	5e-06
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	2e-04
pfam13481	154	pfam13481, AAA_25, AAA domain	2e-04
COG3265	161	COG3265, GntK, Gluconate kinase [Carbohydrate tran	5e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
cd02019	69	cd02019, NK, Nucleoside/nucleotide kinase (NK) is	0.002

>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional

 Score =  264 bits (677), Expect = 2e-90
 Identities = 91/153 (59%), Positives = 111/153 (72%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             NI+WH++ V K  R+QL   KG V+W TGLSGSGKST+A AL +ALH  G  TY+LDG
Sbjct: 1   DENIVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGL  DL F   DR ENIRR+GEVAKL  DAG++ +   ISP+R +R   R  L E
Sbjct: 61  DNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGE 120

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
           G+FIEVF+D PL +CEARDPKGLYK AR G+++
Sbjct: 121 GEFIEVFVDTPLAICEARDPKGLYKKARAGEIR 153

Length = 198

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score =  257 bits (659), Expect = 8e-88
 Identities = 97/153 (63%), Positives = 117/153 (76%)

Query: 80  TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
            NI+WH +SV K++R+ L  QKG VIW TGLSGSGKST+A AL + L  +G   Y+LDGD
Sbjct: 1   ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60

Query: 140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
           N RHGLNRDL F  EDR+ENIRR+ EVAKL ADAG+I I   ISPYR+DR   R +L EG
Sbjct: 61  NVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEG 120

Query: 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           +FIEV++D PL+VCE RDPKGLYK AR G++K 
Sbjct: 121 EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKN 153

Length = 197

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score =  242 bits (620), Expect = 2e-82
 Identities = 88/129 (68%), Positives = 104/129 (80%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           VIW+TGLSGSGKST+A AL + L  RG+  Y+LDGDN RHGLN+DL F  EDR ENIRRI
Sbjct: 1   VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRI 60

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223
            EVAKL ADAG+I IA  ISPYR+DR+A R ++  GDF+EVF+D PL+VCE RDPKGLYK
Sbjct: 61  AEVAKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYK 120

Query: 224 LAREGKVKG 232
            AR G++KG
Sbjct: 121 KARAGEIKG 129

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase

 Score =  241 bits (616), Expect = 8e-82
 Identities = 88/132 (66%), Positives = 101/132 (76%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
           +GC IW TGLSGSGKST+A AL + L  +G   Y+LDGDN RHGLN+DL F  EDR ENI
Sbjct: 1   RGCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENI 60

Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220
           RRI EVAKLFADAG+I I   ISPYR DRD  R +  +G FIEVF+D PL+VCE RDPKG
Sbjct: 61  RRIAEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKFIEVFVDTPLEVCEQRDPKG 120

Query: 221 LYKLAREGKVKG 232
           LYK AR G++KG
Sbjct: 121 LYKKARAGEIKG 132

Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score =  247 bits (632), Expect = 2e-78
 Identities = 88/169 (52%), Positives = 116/169 (68%), Gaps = 9/169 (5%)

Query: 73  NSTVA---------KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
           N+TV          ++TN+ W  + V +  R     QK   +W TGLSGSGKST+A  + 
Sbjct: 422 NATVGAGMIDFALRRATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVE 481

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + LH  G+ TY+LDGDN RHGLNRDL F   DRVENIRR+ EVA+L ADAG+I +   IS
Sbjct: 482 RRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVLVSFIS 541

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           P+R++R+  R++  EG+F+EVF+D PL+VCEARDPKGLY  AR G++K 
Sbjct: 542 PFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKN 590

Length = 632

>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK)

 Score =  226 bits (577), Expect = 2e-75
 Identities = 91/149 (61%), Positives = 109/149 (73%), Gaps = 1/149 (0%)

Query: 84  WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
           WH   + K +RQ L   +G VIW+TGLSGSGKST+A AL + L  +G   Y+LDGDN RH
Sbjct: 1   WHPA-ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59

Query: 144 GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIE 203
           GLN+DL F  EDR ENIRRIGEVAKLF   G+I I   ISPYR DR   R ++ +G+FIE
Sbjct: 60  GLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIE 119

Query: 204 VFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           VF+D PL+VCE RDPKGLYK AR G++KG
Sbjct: 120 VFVDCPLEVCEQRDPKGLYKKARNGEIKG 148

This protein, adenylylsulfate kinase, is often found as a fusion protein with sulfate adenylyltransferase. Important residue (active site in E.coli) is residue 100 of the seed alignment [Central intermediary metabolism, Sulfur metabolism]. Length = 184

>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional

 Score =  160 bits (407), Expect = 6e-50
 Identities = 66/134 (49%), Positives = 88/134 (65%), Gaps = 2/134 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           +Q+G  +W TGLSG+GK+T+A AL++ L   G    +LDGD  R  L++ L F  EDR  
Sbjct: 1   KQRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDT 60

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIG VA L    GVI +   ISPYR+ R+  R+ +   +F+EVF+D PL+VCE RD 
Sbjct: 61  NIRRIGFVANLLTRHGVIVLVSAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDV 118

Query: 219 KGLYKLAREGKVKG 232
           KGLY  AR G++K 
Sbjct: 119 KGLYAKARAGEIKH 132

Length = 175

>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

 Score =  154 bits (391), Expect = 7e-44
 Identities = 67/135 (49%), Positives = 82/135 (60%), Gaps = 2/135 (1%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           ++G  ++ TGLSG+GKST+A AL   L   RG+   +LDGD  R  L+ +L F  EDR  
Sbjct: 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDL 449

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARD 217
           NI RIG VA      G I I   I+PYR  R   R M+   G FIEV +  PL+VCE RD
Sbjct: 450 NILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD 509

Query: 218 PKGLYKLAREGKVKG 232
            KGLY  AREGK+KG
Sbjct: 510 RKGLYAKAREGKIKG 524

Length = 568

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
             G VIWITGL+GSGK+T+A AL + L  +      LDGD  R  L     +  + R+E 
Sbjct: 5   PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHY-GYDKQSRIEM 63

Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219
             +  ++AK  AD G+I I   IS + +     R  LP  ++ EV++   ++    RD K
Sbjct: 64  ALKRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLP--NYFEVYLKCDMEELIRRDQK 121

Query: 220 GLYKLAREGKVK 231
           GLY  A +G++K
Sbjct: 122 GLYTKALKGEIK 133

Length = 176

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL------SFKAEDRV 157
           +I + GL GSGKST A  L + L        +L  D  R  L  D         +A  RV
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGA-----VVLSSDTLRKRLRGDGPPDISYYARASGRV 55

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEA 215
              +R+ E+A+    AG   I    +  R++R     +          V+++ P +V   
Sbjct: 56  --YQRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 216 R 216
           R
Sbjct: 114 R 114

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 25/135 (18%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-----EDR-- 156
           +I + G+SGSGKST+  AL++ L       +I DGD+     N            EDR  
Sbjct: 1   IIVVMGVSGSGKSTVGKALAERLGAP----FI-DGDDLHPPANIAKMAAGIPLNDEDRWP 55

Query: 157 -VENIRRIGEVAKLFADAGVICIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
            ++ +          A  GV+ +AC  L   Y   RD  R          V +D P +V 
Sbjct: 56  WLQALTDALLAKLASAGEGVV-VACSALKRIY---RDILRGGAANPRVRFVHLDGPREVL 111

Query: 214 EARDPKGLYKLAREG 228
             R        AR+G
Sbjct: 112 AERL------AARKG 120

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           +I ITG  GSGKSTLA  L++ L         LD      GL      + +D   ++  +
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIP---VISLDDLLREEGLAELDDGELDDIDIDLELL 57

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            E+    A    +     I   R+     R  L E D + VF+D+PL  C  R
Sbjct: 58  EEILDELAKQEWV-----IDGVRESTLELR--LEEADLV-VFLDLPLPACRFR 102

Length = 114

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           +TG  G GK+TLA  L+ AL  RGK   ++D
Sbjct: 4   VTGKGGVGKTTLAANLAAALAKRGKRVLLID 34

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 21/88 (23%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQAL----HWRGKL------TYILDGDNCRHGLNRDLS 150
           +G +  + G  G+GKSTLA  L+ A+     + G           LDG++   GL R   
Sbjct: 32  RGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRVLYLDGEDSEAGLRR--- 88

Query: 151 FKAEDRVENIRRIGEVAKLFADAGVICI 178
                    +R +GE  +      ++ I
Sbjct: 89  --------RLRALGEALEEIEGPDLVVI 108

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRI 163
           G+SGSGKST+  AL++ L       +I DGD+     N +     +    +DR   +  +
Sbjct: 2   GVSGSGKSTVGSALAERLGA----KFI-DGDDLHPPANIEKMSAGIPLNDDDRWPWLEAL 56

Query: 164 GEVAKLFADAG-VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
           G+ A   A     + IAC  +  R  RD  R   P   F  V++D    +   R
Sbjct: 57  GDAAASLAQKNKHVVIAC-SALKRSYRDLLREANPGLRF--VYLDGDFDLILER 107

Length = 161

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-NIRRIGE 165
           I G  GSGK+TLA AL++ L   G     +DG++    +   L        + +      
Sbjct: 7   IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR 66

Query: 166 VAKLFADA 173
           +    A A
Sbjct: 67  LRLALALA 74

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRG 130
           +I ITG SGSGKST+A  L++ L  R 
Sbjct: 1   IIAITGGSGSGKSTVAKKLAEQLGGRS 27

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.95
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	99.94
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.92
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.92
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.91
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.9
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.9
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.9
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.9
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.9
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.89
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.89
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.89
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.88
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.88
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.87
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.87
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.87
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.87
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.86
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.86
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.86
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.86
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.86
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.86
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.86
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.86
cd03246	173	ABCC_Protease_Secretion This family represents the	99.86
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.86
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.86
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.85
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.85
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.85
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.85
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.85
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.85
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.85
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.85
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.85
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.84
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.84
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.84
COG4559	259	ABC-type hemin transport system, ATPase component	99.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.84
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.84
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.84
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.84
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.84
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.84
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.84
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.84
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.84
PRK10908	222	cell division protein FtsE; Provisional	99.83
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.83
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.83
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.83
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.83
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.83
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.83
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.83
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.83
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.83
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.83
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.83
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.83
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.83
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.83
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.83
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.83
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.83
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.83
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.83
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.83
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.83
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.83
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.83
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.83
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.83
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.83
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.83
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.83
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.82
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.82
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.82
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.82
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.82
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.82
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.82
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.82
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.82
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.82
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.82
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.82
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.82
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.82
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.82
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.82
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.82
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.81
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.81
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.81
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.81
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.81
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.81
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.81
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.81
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.81
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.81
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.81
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.81
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.81
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.81
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.81
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.81
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.81
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.81
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.81
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.81
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.81
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.81
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.8
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.8
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.8
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.8
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.8
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.8
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.8
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.8
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.8
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.8
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.8
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.8
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.8
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.8
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.8
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.8
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.8
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.8
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.8
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.8
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.8
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.8
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.8
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.8
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.8
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.79
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.79
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.79
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.79
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.79
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.79
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.79
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK10938	490	putative molybdenum transport ATP-binding protein	99.79
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.79
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.79
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.79
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.79
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.79
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.79
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.79
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.79
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.79
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.79
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.79
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.79
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.79
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.79
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.79
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.79
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.78
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.78
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.78
COG1123	539	ATPase components of various ABC-type transport sy	99.78
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.78
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.78
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.78
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.78
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.78
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.78
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.78
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.78
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.78
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.78
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.78
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.78
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.78
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.78
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.78
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.77
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.77
COG4181	228	Predicted ABC-type transport system involved in ly	99.77
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.77
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.77
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.77
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.77
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.77
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.77
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.77
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.77
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.77
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.77
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.77
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.76
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.76
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.76
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.76
COG4987	573	CydC ABC-type transport system involved in cytochr	99.76
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.76
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.76
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.76
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.76
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.76
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.76
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.76
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.75
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.75
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.75
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.75
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.75
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.75
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.75
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.75
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.75
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.75
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.75
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.75
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.75
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.74
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.74
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.74
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.74
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.74
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.74
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.73
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.73
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.73
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.73
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.73
PRK10938	490	putative molybdenum transport ATP-binding protein	99.73
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.73
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.73
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.73
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.73
COG1123	539	ATPase components of various ABC-type transport sy	99.72
COG4988	559	CydD ABC-type transport system involved in cytochr	99.72
PRK11147	635	ABC transporter ATPase component; Reviewed	99.72
PRK11147	635	ABC transporter ATPase component; Reviewed	99.72
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.72
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.72
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	99.72
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.72
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.72
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.72
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.71
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.71
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.71
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.71
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.71
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.7
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.7
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.7
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.7
PLN03211	659	ABC transporter G-25; Provisional	99.7
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.7
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.7
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.7
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.7
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.7
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.69
PLN03232	1495	ABC transporter C family member; Provisional	99.69
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.69
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.69
PLN03130	1622	ABC transporter C family member; Provisional	99.69
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.69
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.68
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.68
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.68
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.68
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.67
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.67
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.67
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.67
PTZ00243	1560	ABC transporter; Provisional	99.67
PRK13409	590	putative ATPase RIL; Provisional	99.66
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.66
PLN03073	718	ABC transporter F family; Provisional	99.66
PRK03846	198	adenylylsulfate kinase; Provisional	99.66
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.66
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.66
PLN03073	718	ABC transporter F family; Provisional	99.66
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.65
COG0488	530	Uup ATPase components of ABC transporters with dup	99.65
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.65
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.65
PRK13409	590	putative ATPase RIL; Provisional	99.63
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.63
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.63
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.63
COG4172	534	ABC-type uncharacterized transport system, duplica	99.62
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.62
COG4172	534	ABC-type uncharacterized transport system, duplica	99.62
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.62
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.62
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.61
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.59
COG0488	530	Uup ATPase components of ABC transporters with dup	99.58
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.56
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.55
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.54
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.54
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.53
PLN03130	1622	ABC transporter C family member; Provisional	99.52
PRK00889	175	adenylylsulfate kinase; Provisional	99.52
PLN03232	1495	ABC transporter C family member; Provisional	99.51
PLN03140	1470	ABC transporter G family member; Provisional	99.48
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.47
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.46
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.46
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.41
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.41
PLN03140	1470	ABC transporter G family member; Provisional	99.41
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.37
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.37
PTZ00243	1560	ABC transporter; Provisional	99.36
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.34
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.31
PRK05541	176	adenylylsulfate kinase; Provisional	99.31
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.29
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.28
COG4178	604	ABC-type uncharacterized transport system, permeas	99.28
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.27
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.26
KOG0062	582	consensus ATPase component of ABC transporters wit	99.24
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.23
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.23
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.21
PRK09825	176	idnK D-gluconate kinase; Provisional	99.16
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.12
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.11
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.08
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.06
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.05
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.0
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.99
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.96
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.95
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.93
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.92
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.91
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.9
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.88
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.88
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.85
PRK11545	163	gntK gluconate kinase 1; Provisional	98.85
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.8
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.78
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.75
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.74
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.72
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.72
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.71
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.71
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.65
PRK06762	166	hypothetical protein; Provisional	98.64
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.63
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.62
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.56
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.51
PRK09862	506	putative ATP-dependent protease; Provisional	98.51
KOG0062	582	consensus ATPase component of ABC transporters wit	98.5
PF12558	74	DUF3744: ATP-binding cassette cobalt transporter;	98.5
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.49
PRK00300	205	gmk guanylate kinase; Provisional	98.49
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.49
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.48
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.47
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.45
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.45
PRK08149	428	ATP synthase SpaL; Validated	98.44
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.43
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.43
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.42
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.38
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.38
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.37
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.35
PRK09099	441	type III secretion system ATPase; Provisional	98.34
PLN02796	347	D-glycerate 3-kinase	98.34
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.33
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.32
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.3
TIGR00767	415	rho transcription termination factor Rho. Members	98.29
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.29
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.28
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.25
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.25
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.25
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.22
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.21
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.2
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.2
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.2
PRK05922	434	type III secretion system ATPase; Validated	98.2
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.2
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.18
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.18
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.18
PRK06315	442	type III secretion system ATPase; Provisional	98.18
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.17
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.17
PRK10416	318	signal recognition particle-docking protein FtsY;	98.16
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.16
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.14
PHA02530	300	pseT polynucleotide kinase; Provisional	98.12
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.11
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.11
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.11
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.1
PRK04863	1486	mukB cell division protein MukB; Provisional	98.1
COG0645	170	Predicted kinase [General function prediction only	98.09
PRK05480	209	uridine/cytidine kinase; Provisional	98.09
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.08
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.08
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.06
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.06
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.05
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.03
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.03
PRK01889	356	GTPase RsgA; Reviewed	98.02
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.02
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.02
PRK07261	171	topology modulation protein; Provisional	98.01
PRK06820	440	type III secretion system ATPase; Validated	98.0
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PRK06936	439	type III secretion system ATPase; Provisional	97.96
smart00382	148	AAA ATPases associated with a variety of cellular	97.95
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.94
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.94
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.94
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.92
PRK06761	282	hypothetical protein; Provisional	97.92
PLN03046	460	D-glycerate 3-kinase; Provisional	97.91
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.91
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.9
PLN02318	656	phosphoribulokinase/uridine kinase	97.88
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.88
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.87

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.5e-27  Score=188.91  Aligned_cols=152  Identities=63%  Similarity=1.064  Sum_probs=138.5

Q ss_pred             eeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHH
Q 026725           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR  161 (234)
Q Consensus        82 l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~  161 (234)
                      +.|+...++....-.+.-++|.++|+.|+|||||||++.+|...+...+...+.+||++++..++.+++++.++|.++++
T Consensus         3 i~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR   82 (197)
T COG0529           3 IVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIR   82 (197)
T ss_pred             ccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHH
Confidence            34444444444555667889999999999999999999999999886677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      ++..++.+|.+.++..++++..|+++.|+.+++++..-.+.+++.+.|.+.|.+|||||||+++++|+|+||
T Consensus        83 RvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~f  154 (197)
T COG0529          83 RVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNF  154 (197)
T ss_pred             HHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999989999999999999999999999999999999997

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=99.94  E-value=8.4e-27  Score=180.07  Aligned_cols=155  Identities=86%  Similarity=1.366  Sum_probs=144.7

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHH
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE  158 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~  158 (234)
                      ..|+.|+-..++-.++.-|--++|.++||.|.|||||||++-+|...+...+.-++.+||++++..++.++++..+++.+
T Consensus         8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E   87 (207)
T KOG0635|consen    8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE   87 (207)
T ss_pred             ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence            35788888887777888888899999999999999999999999998864555678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      +++++..++.+|.+.++..+..+..|++.+|+.+++++..-.+.++++|.|.++|.+|||||||+.+|+|.|++|
T Consensus        88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgF  162 (207)
T KOG0635|consen   88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGF  162 (207)
T ss_pred             hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=2.2e-26  Score=187.99  Aligned_cols=135  Identities=20%  Similarity=0.241  Sum_probs=105.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      +++++|++++||+..+|+++|++|++||+++|+||||||||||+|||++|.. |++|+|.++|+++..        .. +
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~~~~~--------~~-~   71 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-PDSGSITVDGEDVGD--------KK-D   71 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-CCCceEEECCEeccc--------hh-h
Confidence            6789999999999999999999999999999999999999999999999887 999999999988752        11 2


Q ss_pred             HHHHHHHHHHHHHHHHhcCceEEEec-------------------------------------------CcccHHHHHHH
Q 026725          156 RVENIRRIGEVAKLFADAGVICIACL-------------------------------------------ISPYRKDRDAC  192 (234)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~  192 (234)
                      ... +|+  .++++||.+++++..+.                                           +.+.+++.++|
T Consensus        72 ~~~-~R~--~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA  148 (240)
T COG1126          72 ILK-LRR--KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA  148 (240)
T ss_pred             HHH-HHH--hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH
Confidence            322 222  78899999988765332                                           12234455677


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      |++.-.+.+  +++|||++.|+..-..+..+..
T Consensus       149 RALaM~P~v--mLFDEPTSALDPElv~EVL~vm  179 (240)
T COG1126         149 RALAMDPKV--MLFDEPTSALDPELVGEVLDVM  179 (240)
T ss_pred             HHHcCCCCE--EeecCCcccCCHHHHHHHHHHH
Confidence            777777777  8999999999555544444433

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.92  E-value=5e-26  Score=192.70  Aligned_cols=142  Identities=19%  Similarity=0.218  Sum_probs=105.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      .++++|+++.|+++.+++|+||++++|++++|+||||||||||+|+|+|+++ |.+|+|+++|+++..       ++..+
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~-------~~~ke   73 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIAS-------LSPKE   73 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhh-------cCHHH
Confidence            5788999999999999999999999999999999999999999999999998 999999999999875       33333


Q ss_pred             HHHHHHHHHHHH-----------------------------------HHHHhcC-----ceEEEecCcccHHHHHHHHHh
Q 026725          156 RVENIRRIGEVA-----------------------------------KLFADAG-----VICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       156 ~~~~~~~~~~~~-----------------------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l  195 (234)
                      +++.+.+++|..                                   ..+...+     ...+..++.+.++..-+|+++
T Consensus        74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL  153 (258)
T COG1120          74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL  153 (258)
T ss_pred             HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence            322111111111                                   1111111     112233344555556677888


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++.++  +++|||++.|+.+..-.+++.+++
T Consensus       154 aQ~~~i--LLLDEPTs~LDi~~Q~evl~ll~~  183 (258)
T COG1120         154 AQETPI--LLLDEPTSHLDIAHQIEVLELLRD  183 (258)
T ss_pred             hcCCCE--EEeCCCccccCHHHHHHHHHHHHH
Confidence            888888  899999999998888777776654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=1.2e-25  Score=198.14  Aligned_cols=134  Identities=20%  Similarity=0.267  Sum_probs=106.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      +.++++|+++.||+..+++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++..       .+++
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-p~~G~I~l~G~~i~~-------lpp~   75 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-PSSGEILLDGEDITD-------VPPE   75 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCC-------CChh
Confidence            46889999999999999999999999999999999999999999999999988 999999999999985       4444


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceEEEe-------------------------------------------cCcccHHHHHH
Q 026725          155 DRVENIRRIGEVAKLFADAGVICIAC-------------------------------------------LISPYRKDRDA  191 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~  191 (234)
                      .|        .++++||++.+++..+                                           ++.+.+++.+.
T Consensus        76 kR--------~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVAL  147 (352)
T COG3842          76 KR--------PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVAL  147 (352)
T ss_pred             hc--------ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHH
Confidence            33        4555555555544321                                           12333455577


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++++..++++  +++|||.+.|+.+-+..+..-++
T Consensus       148 ARAL~~~P~v--LLLDEPlSaLD~kLR~~mr~Elk  180 (352)
T COG3842         148 ARALVPEPKV--LLLDEPLSALDAKLREQMRKELK  180 (352)
T ss_pred             HHHhhcCcch--hhhcCcccchhHHHHHHHHHHHH
Confidence            8888888888  89999999998887776655444

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.9e-25  Score=195.80  Aligned_cols=142  Identities=21%  Similarity=0.217  Sum_probs=106.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      .++++|+++.||+..+++++|++|+.||+++|+||||||||||||+|+|+.. |++|+|+++|++++.       +.|++
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~-------l~P~~   74 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTD-------LPPEK   74 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCC-------CChhH
Confidence            4788999999998779999999999999999999999999999999999988 999999999999986       33332


Q ss_pred             H--------------------------------HHHHHHHHHHHHHHHhcCce--EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          156 R--------------------------------VENIRRIGEVAKLFADAGVI--CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       156 ~--------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      |                                .+..+++..++..+.-..+.  ....++.+.+++.+.+++++.++.+
T Consensus        75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v  154 (338)
T COG3839          75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV  154 (338)
T ss_pred             CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence            2                                11122222232222211111  1123345566777889999999998


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||.+.|+.+-+..+...+++
T Consensus       155 --~L~DEPlSnLDa~lR~~mr~ei~~  178 (338)
T COG3839         155 --FLLDEPLSNLDAKLRVLMRSEIKK  178 (338)
T ss_pred             --EEecCchhHhhHHHHHHHHHHHHH
Confidence              899999999998888776665553

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=7.1e-25  Score=182.95  Aligned_cols=134  Identities=15%  Similarity=0.223  Sum_probs=103.3

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      +++++|+++.|++..+++|+||+|++||+++++|||||||||++|+|++++. |++|+|+++|+++..       +.+.+
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~-------~d~~~   72 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISD-------LDPVE   72 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-CCCceEEECCeeccc-------CCHHH
Confidence            4688999999999999999999999999999999999999999999999998 999999999999985       55555


Q ss_pred             HHHHHHHHHHHHHHHHhcCceEEEec--------------------------------------------CcccHHHHHH
Q 026725          156 RVENIRRIGEVAKLFADAGVICIACL--------------------------------------------ISPYRKDRDA  191 (234)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~  191 (234)
                      +++.      ++++.|..++++..+.                                            +.+.+++...
T Consensus        73 LRr~------IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv  146 (309)
T COG1125          73 LRRK------IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGV  146 (309)
T ss_pred             HHHh------hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHH
Confidence            5553      3344444444332111                                            1223344466


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      ++++...+.+  +++|||+..++.-.++.+-..+
T Consensus       147 ~RALAadP~i--lLMDEPFgALDpI~R~~lQ~e~  178 (309)
T COG1125         147 ARALAADPPI--LLMDEPFGALDPITRKQLQEEI  178 (309)
T ss_pred             HHHHhcCCCe--EeecCCccccChhhHHHHHHHH
Confidence            7777777777  8999999999776666554433

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.7e-24  Score=178.92  Aligned_cols=138  Identities=16%  Similarity=0.244  Sum_probs=111.3

Q ss_pred             cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      +++++|+++.| ++++++++|||+|++||+++|+|+||||||||+|+|+|+.. |++|+|.++|.++..       +...
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-~t~G~i~~~g~~i~~-------~~~k   74 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITK-------LKGK   74 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-CCcceEEecccchhc-------cchH
Confidence            68999999999 89999999999999999999999999999999999999888 999999999999874       5555


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceEEEe--------------------------------------------------cCcc
Q 026725          155 DRVENIRRIGEVAKLFADAGVICIAC--------------------------------------------------LISP  184 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~  184 (234)
                      +.+.+++   +++++||.+++.+-..                                                  ++.+
T Consensus        75 ~lr~~r~---~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG  151 (258)
T COG3638          75 ELRKLRR---DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG  151 (258)
T ss_pred             HHHHHHH---hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence            5655444   6788888877632210                                                  0223


Q ss_pred             cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          185 YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       185 ~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..++.++++.++..+.+  ++-|||...|+....+...+-++
T Consensus       152 QQQRVaIARaL~Q~pki--ILADEPvasLDp~~a~~Vm~~l~  191 (258)
T COG3638         152 QQQRVAIARALVQQPKI--ILADEPVASLDPESAKKVMDILK  191 (258)
T ss_pred             hhHHHHHHHHHhcCCCE--EecCCcccccChhhHHHHHHHHH
Confidence            34455788888888888  88999999998887776555443

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=6e-24  Score=175.33  Aligned_cols=150  Identities=17%  Similarity=0.234  Sum_probs=112.8

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~  149 (234)
                      ++++++|++..||..++|++|||++++||+++|+|+||+|||||+|+|+|+++ +.+|+|.++|+|++.....     .+
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCe
Confidence            47899999999999999999999999999999999999999999999999998 8899999999999864322     13


Q ss_pred             CCChhhHH--------HHHHH--------------HHHHHHHHHhcC---ceEEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          150 SFKAEDRV--------ENIRR--------------IGEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       150 ~~~~~~~~--------~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++.|+.+.        +++..              +..+..+|....   ...-..++.+.++...++++++.++.+  +
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl--L  158 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL--L  158 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE--E
Confidence            44444332        11110              111111111110   011133456677888999999999999  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||++.|...-.+.+++.+++
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~  181 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKE  181 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHH
Confidence            99999999988888888887763

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1.6e-24  Score=185.58  Aligned_cols=115  Identities=24%  Similarity=0.296  Sum_probs=101.1

Q ss_pred             CccccccccccccccccccccccceeeccccccccccccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCC
Q 026725           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS  113 (234)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGs  113 (234)
                      .+++++|+||.++..++.....+.+..+....++.                    +..++|+||++++||+++|+|.|||
T Consensus         6 ~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~--------------------vvGv~~~sl~v~~GeIfViMGLSGS   65 (386)
T COG4175           6 EIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGL--------------------VVGVNDASLDVEEGEIFVIMGLSGS   65 (386)
T ss_pred             EeecceeecccCHHHHHHHHHcCCcHHHHHHhhCc--------------------EEeeccceeeecCCeEEEEEecCCC
Confidence            67899999999999999988887777766554443                    4568899999999999999999999


Q ss_pred             cHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026725          114 GKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (234)
Q Consensus       114 GKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      |||||+|+|++++. |++|+|+++|+|+..       ++..++++.++.  .++++||.++++++
T Consensus        66 GKSTLvR~~NrLie-pt~G~ilv~g~di~~-------~~~~~Lr~~Rr~--~~sMVFQ~FaLlPh  120 (386)
T COG4175          66 GKSTLVRLLNRLIE-PTRGEILVDGKDIAK-------LSAAELRELRRK--KISMVFQSFALLPH  120 (386)
T ss_pred             CHHHHHHHHhccCC-CCCceEEECCcchhc-------CCHHHHHHHHhh--hhhhhhhhhccccc
Confidence            99999999999998 999999999999984       888888887776  89999999998765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=6.7e-24  Score=175.84  Aligned_cols=139  Identities=20%  Similarity=0.237  Sum_probs=106.8

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~  153 (234)
                      .+++++++++++||++.+++|+||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|+++..       ++.
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-P~~GeI~i~G~~i~~-------ls~   77 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQ-------LSE   77 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-CCCCeEEEcCcchhc-------cCH
Confidence            458999999999999999999999999999999999999999999999999998 999999999999874       666


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCc------eEEEec--------------------------------------CcccHHHH
Q 026725          154 EDRVENIRRIGEVAKLFADAGV------ICIACL--------------------------------------ISPYRKDR  189 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------------------------------------~~~~~~~~  189 (234)
                      .++.+.++   .++.+||..++      ++++.+                                      +.+.+++.
T Consensus        78 ~~~~~ir~---r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv  154 (263)
T COG1127          78 EELYEIRK---RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV  154 (263)
T ss_pred             HHHHHHHh---heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH
Confidence            55544433   34445554433      333222                                      12234455


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      ..||++.-.+.+  +++|||+..++.-....+-+.+
T Consensus       155 aLARAialdPel--l~~DEPtsGLDPI~a~~~~~LI  188 (263)
T COG1127         155 ALARAIALDPEL--LFLDEPTSGLDPISAGVIDELI  188 (263)
T ss_pred             HHHHHHhcCCCE--EEecCCCCCCCcchHHHHHHHH
Confidence            778888888888  8999999999665544443333

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.1e-23  Score=177.69  Aligned_cols=150  Identities=19%  Similarity=0.225  Sum_probs=111.3

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-ccCCCCh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKA  153 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-~~~~~~~  153 (234)
                      ++++++|+++.|++.++|+|+||++++|++++|+||||||||||+|+|+|+++ |.+|+|.+.|+++..... ..++|.|
T Consensus         3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVP   81 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVP   81 (254)
T ss_pred             cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcC
Confidence            46899999999996689999999999999999999999999999999999998 999999999987543221 1234444


Q ss_pred             hhHH---------------------HHHHHH-----HHHHHHHHh-----cCceEEEecCcccHHHHHHHHHhCCCCCce
Q 026725          154 EDRV---------------------ENIRRI-----GEVAKLFAD-----AGVICIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       154 ~~~~---------------------~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +...                     .++++.     ..+...+..     +....+..++.+..++.-+|++++..+++ 
T Consensus        82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l-  160 (254)
T COG1121          82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL-  160 (254)
T ss_pred             cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE-
Confidence            4221                     000000     111222222     22233455566777777889999999999 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..++....+.+|+.+.+
T Consensus       161 -llLDEP~~gvD~~~~~~i~~lL~~  184 (254)
T COG1121         161 -LLLDEPFTGVDVAGQKEIYDLLKE  184 (254)
T ss_pred             -EEecCCcccCCHHHHHHHHHHHHH
Confidence             899999999999888888887754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.90  E-value=7.7e-24  Score=176.17  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=110.1

Q ss_pred             ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC
Q 026725           77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK  152 (234)
Q Consensus        77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~  152 (234)
                      ++++|+++.|+.    ..+++++||+|++||+++|+||||||||||+++|.|+.. |++|.|.++|.++..       ++
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~~-------l~   73 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLTK-------LS   73 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcCc-------CC
Confidence            467889998853    479999999999999999999999999999999999888 899999999999874       55


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCceEE-------------------------------------------EecCcccHHHH
Q 026725          153 AEDRVENIRRIGEVAKLFADAGVICI-------------------------------------------ACLISPYRKDR  189 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~  189 (234)
                      ..++...++.  .++++||++++.+.                                           ..++.+.+++.
T Consensus        74 ~~~~~~~R~~--~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRV  151 (226)
T COG1136          74 EKELAKLRRK--KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV  151 (226)
T ss_pred             HHHHHHHHHH--hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHH
Confidence            5555444443  56666666655322                                           11123345666


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+||+++..+.+  ++.|||+..|+....+.+++.+++
T Consensus       152 AIARAL~~~P~i--ilADEPTgnLD~~t~~~V~~ll~~  187 (226)
T COG1136         152 AIARALINNPKI--ILADEPTGNLDSKTAKEVLELLRE  187 (226)
T ss_pred             HHHHHHhcCCCe--EEeeCccccCChHHHHHHHHHHHH
Confidence            889999999999  899999999999888888877764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.5e-23  Score=171.78  Aligned_cols=147  Identities=18%  Similarity=0.199  Sum_probs=106.3

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      .++++++++.|+...+++|+||+|.+||+++|+||||||||||+|+|+|+.. |++|+|.++|+.+... ..++++..|+
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~~p-~~~~~~vFQ~   80 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVTGP-GPDIGYVFQE   80 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccCCC-CCCEEEEecc
Confidence            5788999999999999999999999999999999999999999999999998 9999999999987322 1111111111


Q ss_pred             H--HHHHHHH------------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          156 R--VENIRRI------------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       156 ~--~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                      .  ..|+...                  ..+...+...++..     -..++.+.+++..++++++..+.+  +++|||+
T Consensus        81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l--LLlDEPF  158 (248)
T COG1116          81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL--LLLDEPF  158 (248)
T ss_pred             CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence            0  0110000                  01112222222211     123456778888999999999999  8999999


Q ss_pred             hhhhhcchhhHHHHHH
Q 026725          211 QVCEARDPKGLYKLAR  226 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~  226 (234)
                      ..|+.-.+..+.+.+.
T Consensus       159 gALDalTR~~lq~~l~  174 (248)
T COG1116         159 GALDALTREELQDELL  174 (248)
T ss_pred             chhhHHHHHHHHHHHH
Confidence            9998888777666543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=3e-24  Score=178.36  Aligned_cols=143  Identities=16%  Similarity=0.212  Sum_probs=104.4

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      +++++++++++||+..+++||||++++||+++|||||||||||++++|+|+++ |++|+|.++|++++.       +++.
T Consensus         3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~-------l~p~   74 (250)
T COG0411           3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITG-------LPPH   74 (250)
T ss_pred             ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCC-------CCHH
Confidence            46889999999999999999999999999999999999999999999999999 999999999999974       3333


Q ss_pred             hHHHH-HHHHHHHHHHHHhcC-------------------------------------------ceE-----EEecCccc
Q 026725          155 DRVEN-IRRIGEVAKLFADAG-------------------------------------------VIC-----IACLISPY  185 (234)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~~~~-------------------------------------------~~~-----~~~~~~~~  185 (234)
                      ++.+. +.+..|+..+|...+                                           +..     ...+..+.
T Consensus        75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence            32110 000011111111111                                           110     01122334


Q ss_pred             HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+++++++.++.+  +++|||...+...+...+.+.+++
T Consensus       155 qR~LEIArALa~~P~l--LLLDEPaAGln~~e~~~l~~~i~~  194 (250)
T COG0411         155 QRRLEIARALATQPKL--LLLDEPAAGLNPEETEELAELIRE  194 (250)
T ss_pred             hHHHHHHHHHhcCCCE--EEecCccCCCCHHHHHHHHHHHHH
Confidence            4556888999999988  899999999988887777666553

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.1e-23  Score=176.09  Aligned_cols=138  Identities=15%  Similarity=0.210  Sum_probs=109.0

Q ss_pred             cceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCC
Q 026725           76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~  150 (234)
                      +++++++++.|..     ..+++|+||+|++|++++|+|.||||||||+|+|++|-. |++|+|.++|+++..       
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G~di~~-------   72 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-PTSGSVFVDGQDLTA-------   72 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEEcCEeccc-------
Confidence            4678899999975     579999999999999999999999999999999999887 999999999999984       


Q ss_pred             CChhhHHHHHHHHHHHHHHHHhcCceE------EEec------------------------------------CcccHHH
Q 026725          151 FKAEDRVENIRRIGEVAKLFADAGVIC------IACL------------------------------------ISPYRKD  188 (234)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------------------------------------~~~~~~~  188 (234)
                      ++...++..++   .++|+||.++++.      ++++                                    +.+.+++
T Consensus        73 l~~~~Lr~~R~---~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQR  149 (339)
T COG1135          73 LSEAELRQLRQ---KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQR  149 (339)
T ss_pred             CChHHHHHHHh---hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhH
Confidence            66666655444   6888888887642      1111                                    2234556


Q ss_pred             HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+||++...+.+  ++.||+++.|+....+.+.+.++
T Consensus       150 VaIARALa~~P~i--LL~DEaTSALDP~TT~sIL~LL~  185 (339)
T COG1135         150 VAIARALANNPKI--LLCDEATSALDPETTQSILELLK  185 (339)
T ss_pred             HHHHHHHhcCCCE--EEecCccccCChHHHHHHHHHHH
Confidence            6788888888888  88999999996666565555543

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.88  E-value=2.8e-22  Score=158.40  Aligned_cols=133  Identities=62%  Similarity=1.035  Sum_probs=116.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEe
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (234)
                      +|-++||+|.+|||||||++.|...+...+...+++||+.++..+..+++++.++|.++++++..++.++.+.+..+++.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            58899999999999999999999988766678899999999988888899999999999999999999999999999999


Q ss_pred             cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      +..+.++.|+.+++.+....+.+++++.|.+.|.+||+|+||++.++|+++||
T Consensus        81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~  133 (156)
T PF01583_consen   81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNF  133 (156)
T ss_dssp             ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSH
T ss_pred             eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCc
Confidence            99999999999999998778889999999999999999999999999999986

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.88  E-value=6.8e-23  Score=164.42  Aligned_cols=138  Identities=16%  Similarity=0.190  Sum_probs=104.1

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      +++++|+++.|+ +..+|+|+||+|++||++.|+||||||||||+|+|++... |++|.|.++|.|+.....       .
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~-------~   72 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKG-------R   72 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccc-------c
Confidence            467899999995 4559999999999999999999999999999999999988 999999999999975322       2


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceE------EE------------------------------------ecCcccHHHHHHH
Q 026725          155 DRVENIRRIGEVAKLFADAGVIC------IA------------------------------------CLISPYRKDRDAC  192 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~------~~------------------------------------~~~~~~~~~~~~~  192 (234)
                      +. ..+++  +++.+||++.+..      ++                                    .++.+.+++..+|
T Consensus        73 ~i-P~LRR--~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA  149 (223)
T COG2884          73 EI-PFLRR--QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA  149 (223)
T ss_pred             cc-chhhh--eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence            21 12222  4555555544321      11                                    1133445667889


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +++.+++.+  ++-|||+-.++.....++...+.
T Consensus       150 RAiV~~P~v--LlADEPTGNLDp~~s~~im~lfe  181 (223)
T COG2884         150 RAIVNQPAV--LLADEPTGNLDPDLSWEIMRLFE  181 (223)
T ss_pred             HHHccCCCe--EeecCCCCCCChHHHHHHHHHHH
Confidence            999999988  88999999997766666665544

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.87  E-value=1.2e-21  Score=158.92  Aligned_cols=137  Identities=20%  Similarity=0.230  Sum_probs=105.3

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHH
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV  157 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~  157 (234)
                      +++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|+++..       +.+....
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~-------~~~~~~~   72 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLAS-------LSPKELA   72 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCc-------CCHHHHH
Confidence            35789999988889999999999999999999999999999999999988 899999999998763       3333332


Q ss_pred             HHHHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          158 ENIRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.++.+   .+...++.     ....++.+.++....++.++..+.+  +++|||+..++....+.+++.+++
T Consensus        73 ~~i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~~LD~~~~~~~~~~l~~  142 (180)
T cd03214          73 RKIAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELLRR  142 (180)
T ss_pred             HHHhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            22332222   22222221     1233455667777889999999998  899999999988888888777653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.87  E-value=1.2e-22  Score=164.53  Aligned_cols=135  Identities=16%  Similarity=0.217  Sum_probs=104.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC--hh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK--AE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~--~~  154 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..       +.  ..
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~~~~~   72 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTD-------LEDELP   72 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccc-------cchhHH
Confidence            357899999988889999999999999999999999999999999999988 899999999988753       22  11


Q ss_pred             hHHHHHHHHHHHHHHHHhcCce------EEEe--cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          155 DRVENIRRIGEVAKLFADAGVI------CIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ....      .+++++|+...+      ....  ++.+.++....+++++..+.+  +++|||+..++......+++.++
T Consensus        73 ~~~~------~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~l--lilDEP~~~LD~~~~~~l~~~l~  144 (178)
T cd03229          73 PLRR------RIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDV--LLLDEPTSALDPITRREVRALLK  144 (178)
T ss_pred             HHhh------cEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            1111      233333433221      1111  555667777889999999998  89999999998888888877765


Q ss_pred             c
Q 026725          227 E  227 (234)
Q Consensus       227 ~  227 (234)
                      +
T Consensus       145 ~  145 (178)
T cd03229         145 S  145 (178)
T ss_pred             H
Confidence            4

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.87  E-value=3e-22  Score=160.20  Aligned_cols=127  Identities=22%  Similarity=0.278  Sum_probs=102.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~  156 (234)
                      ++++|+++.|++.++++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|+++..       ..+.+.
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~-------~~~~~~   72 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSF-------ASPRDA   72 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCc-------CCHHHH
Confidence            357899999988899999999999999999999999999999999999988 899999999988753       222111


Q ss_pred             HHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                         .+.  .+++++|         ++.+.++....++.++..+.+  +++|||+..++....+.+++.+++
T Consensus        73 ---~~~--~i~~~~q---------LS~G~~qrl~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216          73 ---RRA--GIAMVYQ---------LSVGERQMVEIARALARNARL--LILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             ---Hhc--CeEEEEe---------cCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence               110  1222222         566677778889999999988  899999999998888888888764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.87  E-value=3.9e-22  Score=160.63  Aligned_cols=135  Identities=19%  Similarity=0.186  Sum_probs=103.3

Q ss_pred             ceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           77 AKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      ++++|+++.|++.  .+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|+++|+++..       +...
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~-------~~~~   72 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRD-------LDLE   72 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhh-------cCHH
Confidence            3578999999875  79999999999999999999999999999999999998 899999999988753       2222


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceEEEe----cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          155 DRVENIRRIGEVAKLFADAGVICIAC----LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+..      .+++++|+...+....    ++.+.++....+++++..+.+  +++|||+..++......+++.+++
T Consensus        73 ~~~~------~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~l--lllDEP~~gLD~~~~~~l~~~l~~  141 (171)
T cd03228          73 SLRK------NIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPI--LILDEATSALDPETEALILEALRA  141 (171)
T ss_pred             HHHh------hEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHHH
Confidence            2111      2333333332221100    445566677788999999988  899999999998888888887764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=5.7e-22  Score=172.67  Aligned_cols=149  Identities=17%  Similarity=0.264  Sum_probs=110.9

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc---ccccCCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~---~~~~~~~  151 (234)
                      +++++|+++.|+ .+.+|+++||++++|++++|+||||||||||+|+|+|++. |++|+|.++|.++...   ....+++
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy   82 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGY   82 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEE
Confidence            567899999999 6999999999999999999999999999999999999998 9999999999887541   1111222


Q ss_pred             -----------ChhhHHHHHHHHH---------HHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 -----------KAEDRVENIRRIG---------EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 -----------~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                                 +..+..+....+.         .+..++...++..     +..++.+.++....+.+++..+.+  +++
T Consensus        83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l--liL  160 (293)
T COG1131          83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL--LIL  160 (293)
T ss_pred             EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE--EEE
Confidence                       2222212111111         2223344444432     234566778888899999999988  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+...+..+++.+++
T Consensus       161 DEPt~GLDp~~~~~~~~~l~~  181 (293)
T COG1131         161 DEPTSGLDPESRREIWELLRE  181 (293)
T ss_pred             CCCCcCCCHHHHHHHHHHHHH
Confidence            999999988888877777664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.86  E-value=6.8e-23  Score=183.93  Aligned_cols=171  Identities=21%  Similarity=0.179  Sum_probs=119.4

Q ss_pred             CccccccccccccccccccccccceeeccccccccccccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCC
Q 026725           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGS  113 (234)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGs  113 (234)
                      .+++|+|+||.+|.++++....+.+.++                    +.+.|+...+++|+||++++||+++|+|+|||
T Consensus         2 ~~~~~~k~fg~~~~~~~~~~~~g~~~~~--------------------~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGs   61 (382)
T TIGR03415         2 DFKNVDVVFGDQPAEALALLDQGKTREE--------------------ILDETGLVVGVANASLDIEEGEICVLMGLSGS   61 (382)
T ss_pred             EEEeeEEeeCCCHHHHHHHHHcCCCHHH--------------------HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCC
Confidence            4678999999999988876665444333                    45678888899999999999999999999999


Q ss_pred             cHHHHHHHHHhhcccCCccEEEEcCc----cccccc--------cccCCCChh--------hHHHHHHHH----------
Q 026725          114 GKSTLACALSQALHWRGKLTYILDGD----NCRHGL--------NRDLSFKAE--------DRVENIRRI----------  163 (234)
Q Consensus       114 GKSTLlr~l~gll~~p~~G~i~~~g~----~v~~~~--------~~~~~~~~~--------~~~~~~~~~----------  163 (234)
                      |||||+|+|+|+++ |++|+|+++|+    ++....        ...+++..+        ...+++.+.          
T Consensus        62 GKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~  140 (382)
T TIGR03415        62 GKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAE  140 (382)
T ss_pred             cHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHH
Confidence            99999999999998 99999999996    332110        001111111        111222110          


Q ss_pred             --HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          164 --GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       164 --~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        ..+...+...++...     ..++.+.++....+++++..+.+  +++|||++.|+...+..+++.+++
T Consensus       141 ~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I--LLlDEPts~LD~~~r~~l~~~L~~  209 (382)
T TIGR03415       141 RRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI--LLMDEPFSALDPLIRTQLQDELLE  209 (382)
T ss_pred             HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHHHHHHHHHHHH
Confidence              011122222332211     22345566777889999999998  899999999998888888887754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=1.2e-21  Score=162.69  Aligned_cols=149  Identities=11%  Similarity=0.154  Sum_probs=113.3

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      .+++++++++||+..+++|+||++++|++++++|+|||||||++|+|.|++. |++|.|.++|.+++......+||-|++
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~~~~rIGyLPEE   80 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRIGYLPEE   80 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhhhhhhcccChhh
Confidence            4688999999999999999999999999999999999999999999999998 999999999999887666667888877


Q ss_pred             HH--------HHHHHHH------------HHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          156 RV--------ENIRRIG------------EVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       156 ~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                      |.        +.+.+++            .+.+.+..+.+...     -.++.+..+.-+.+.+++..+.+  +++|+|+
T Consensus        81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL--lILDEPF  158 (300)
T COG4152          81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL--LILDEPF  158 (300)
T ss_pred             hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE--EEecCCc
Confidence            63        2222221            11222222222111     12244555666778889999999  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      +.|+.-+.+.|-+.+.+
T Consensus       159 SGLDPVN~elLk~~I~~  175 (300)
T COG4152         159 SGLDPVNVELLKDAIFE  175 (300)
T ss_pred             cCCChhhHHHHHHHHHH
Confidence            99977776666655543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.86  E-value=1.5e-22  Score=163.28  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=103.8

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHH
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV  157 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~  157 (234)
                      +++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|.++|+++..       .. ..++
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~-~~~~   72 (173)
T cd03230           2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKK-------EP-EEVK   72 (173)
T ss_pred             EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEccc-------ch-Hhhh
Confidence            57889999988789999999999999999999999999999999999988 899999999987752       11 1111


Q ss_pred             HHHHHHHHHHHHHHhcCceE------EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          158 ENIRRIGEVAKLFADAGVIC------IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .      .+++++|+...+.      ...++.+.++....+++++..+.+  +++|||+..++....+.+++.+++
T Consensus        73 ~------~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~l~~  140 (173)
T cd03230          73 R------RIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPEL--LILDEPTSGLDPESRREFWELLRE  140 (173)
T ss_pred             c------cEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            1      2334444432221      111455666777889999999998  899999999988888888877764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=5.9e-22  Score=164.68  Aligned_cols=148  Identities=22%  Similarity=0.245  Sum_probs=103.7

Q ss_pred             ccceeeceeeecCCcc----ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----
Q 026725           75 TVAKSTNILWHKNSVD----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----  145 (234)
                      ++++++|+++.|+...    ++++|||++.+||+++|+|+||||||||+|+|+|+.+ |++|+|.++|+.+....     
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhh
Confidence            3688999999998877    9999999999999999999999999999999999988 99999999997665321     


Q ss_pred             cccC---------CCChhhHH-HHHHHHH----------HHHHHHHhcCceE------EEecCcccHHHHHHHHHhCCCC
Q 026725          146 NRDL---------SFKAEDRV-ENIRRIG----------EVAKLFADAGVIC------IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 ~~~~---------~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      ...+         +++|.... +.+....          .+..++...++-+      ...++.+.+++-.+++++.-++
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P  160 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP  160 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence            0010         11111100 0000000          1222222222211      1224556677888999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      .+  +++|||++.|+......++..+
T Consensus       161 kl--LIlDEptSaLD~siQa~IlnlL  184 (252)
T COG1124         161 KL--LILDEPTSALDVSVQAQILNLL  184 (252)
T ss_pred             CE--EEecCchhhhcHHHHHHHHHHH
Confidence            99  8999999999877766655443

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.86  E-value=6.8e-22  Score=177.88  Aligned_cols=146  Identities=21%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-----C
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----L  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-----~  149 (234)
                      +.++++++++.|+++.+.++|||++++||+++|+|+||||||||+++|.|++. |++|+|+++|+.+....+.+     +
T Consensus         3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-P~~GeI~v~G~~v~~~sP~dA~~~GI   81 (501)
T COG3845           3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPRDAIRLGI   81 (501)
T ss_pred             ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-CCcceEEECCEEeccCCHHHHHHcCC
Confidence            46788999999999999999999999999999999999999999999999999 99999999999986321100     1


Q ss_pred             ---------------------CCChh-----hHHHHHHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCC
Q 026725          150 ---------------------SFKAE-----DRVENIRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       150 ---------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~  198 (234)
                                           +..+.     +++...+   .+..+.+.+++.     .+..++.+.+++.++++.+...
T Consensus        82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~---~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~  158 (501)
T COG3845          82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA---RIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG  158 (501)
T ss_pred             cEEeeccccccccchhhhhhhcCccccccccCHHHHHH---HHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence                                 11100     1111111   223333333332     1233345567777888999988


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+  +++|||+.+|.....+.||..++
T Consensus       159 a~i--LILDEPTaVLTP~E~~~lf~~l~  184 (501)
T COG3845         159 ARL--LILDEPTAVLTPQEADELFEILR  184 (501)
T ss_pred             CCE--EEEcCCcccCCHHHHHHHHHHHH
Confidence            888  89999999999888888887665

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=3.6e-22  Score=170.67  Aligned_cols=149  Identities=21%  Similarity=0.225  Sum_probs=102.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc---ccccccc--ccCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRHGLN--RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~---~v~~~~~--~~~~  150 (234)
                      .++++++++.|+...+++|+|++|+.||+++++||||||||||+|+|+|+.. |++|.|.++|+   |......  +.+|
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhccee
Confidence            3677899999999999999999999999999999999999999999999998 99999999999   5543110  0011


Q ss_pred             CChhhHH-------------------------HHHHHHHHHHHHHHhcCc--eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          151 FKAEDRV-------------------------ENIRRIGEVAKLFADAGV--ICIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       151 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +.-++..                         +...++...-.++|-.++  .....++.+.+++.+.++++..++.+  
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v--  158 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV--  158 (345)
T ss_pred             EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe--
Confidence            1111110                         111111111111111111  00112234456666788888888888  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..|+..-++.+.+-+++
T Consensus       159 LLLDEPf~ALDa~vr~~lr~wLr~  182 (345)
T COG1118         159 LLLDEPFGALDAKVRKELRRWLRK  182 (345)
T ss_pred             EeecCCchhhhHHHHHHHHHHHHH
Confidence            899999999998888887776653

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.8e-21  Score=158.91  Aligned_cols=130  Identities=17%  Similarity=0.146  Sum_probs=97.4

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccccccc
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHGLNRD  148 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~~~~~  148 (234)
                      .+.++++|+++.||...+|+|||++|+++++++++||||||||||+|+++++.. ..     .|+|.++|+++...    
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~~~r~~G~v~~~g~ni~~~----   79 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGEVLLDGKNIYDP----   79 (253)
T ss_pred             cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCcCceEEEEEEECCeeccCC----
Confidence            347889999999999999999999999999999999999999999999999876 33     49999999999641    


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHhcCceEEEe-----c----------------------------------------Cc
Q 026725          149 LSFKAEDRVENIRRIGEVAKLFADAGVICIAC-----L----------------------------------------IS  183 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------------------------------~~  183 (234)
                       ..+.-+.++      .++++||.++.++..-     +                                        +.
T Consensus        80 -~~d~~~lRr------~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSG  152 (253)
T COG1117          80 -KVDVVELRR------RVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSG  152 (253)
T ss_pred             -CCCHHHHHH------HheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCCh
Confidence             122222222      6777777776554211     1                                        12


Q ss_pred             ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      +.+++.-+||++.-.+.+  +++|||++.|+.-.
T Consensus       153 GQQQRLcIARalAv~PeV--lLmDEPtSALDPIs  184 (253)
T COG1117         153 GQQQRLCIARALAVKPEV--LLMDEPTSALDPIS  184 (253)
T ss_pred             hHHHHHHHHHHHhcCCcE--EEecCcccccCchh
Confidence            223344566777666777  89999999995544

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.86  E-value=7.8e-22  Score=159.77  Aligned_cols=134  Identities=21%  Similarity=0.174  Sum_probs=103.6

Q ss_pred             ceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           77 AKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      ++++|+++.|++.  .+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++..       . ..
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~-------~-~~   71 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSD-------L-EK   71 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHH-------H-HH
Confidence            3578899999765  79999999999999999999999999999999999988 899999999987642       1 11


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceE-------EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          155 DRVENIRRIGEVAKLFADAGVIC-------IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..    +.  .+++++|++.++.       ...++.+.++....+++++..+.+  +++|||+..++....+.+++.+++
T Consensus        72 ~~----~~--~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~--lllDEP~~~LD~~~~~~l~~~l~~  143 (178)
T cd03247          72 AL----SS--LISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLIFE  143 (178)
T ss_pred             HH----Hh--hEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence            11    11  2333444433221       223445566777889999999998  899999999998888888888765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.86  E-value=4.5e-22  Score=160.54  Aligned_cols=135  Identities=19%  Similarity=0.199  Sum_probs=104.7

Q ss_pred             ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      ++++|++++|++  ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++..       +...
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~~~   72 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQ-------WDPN   72 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEccc-------CCHH
Confidence            357899999975  569999999999999999999999999999999999988 899999999988753       3322


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceEEE----ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          155 DRVENIRRIGEVAKLFADAGVICIA----CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.      .+++++|+...+...    .++.+.++....+++++..+.+  +++|||+..++....+.+++.+++
T Consensus        73 ~~~~------~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~  141 (173)
T cd03246          73 ELGD------HVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIAA  141 (173)
T ss_pred             HHHh------heEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence            2211      344445544322210    0455666777889999999998  899999999998888888777754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.3e-21  Score=157.93  Aligned_cols=143  Identities=19%  Similarity=0.187  Sum_probs=102.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      +++++|++++|+++.+++++|+++++|.+++++||||||||||+.+++++++ .++|+|+++|.++..       ++.++
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-~d~G~i~i~g~~~~~-------~~s~~   72 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-KDSGEITIDGLELTS-------TPSKE   72 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-ccCceEEEeeeeccc-------CChHH
Confidence            3678999999999999999999999999999999999999999999999998 899999999999984       77777


Q ss_pred             HHHHHHHHHHHHHHHHhcCceEEEec-------CcccHHHHHHHHHhCCCC-----------------------------
Q 026725          156 RVENIRRIGEVAKLFADAGVICIACL-------ISPYRKDRDACRSMLPEG-----------------------------  199 (234)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~-----------------------------  199 (234)
                      +++.+..+.+........++...+.|       .++..+++..+.++++-+                             
T Consensus        73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ  152 (252)
T COG4604          73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ  152 (252)
T ss_pred             HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec
Confidence            76655444333322222222222222       122344554444443322                             


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +-.-+++|||.+.|+-...-.+.+.++
T Consensus       153 dTdyvlLDEPLNNLDmkHsv~iMk~Lr  179 (252)
T COG4604         153 DTDYVLLDEPLNNLDMKHSVQIMKILR  179 (252)
T ss_pred             cCcEEEecCcccccchHHHHHHHHHHH
Confidence            122378999999997777666665554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.8e-21  Score=157.62  Aligned_cols=149  Identities=13%  Similarity=0.189  Sum_probs=108.6

Q ss_pred             cceeeceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---ccCCC
Q 026725           76 VAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---RDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~~~~~  151 (234)
                      ++++.+++++|+..+ +++||||++++||+++|+|||||||||++|+|++++. |++|.|+++|-|....+.   ..++.
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGV   79 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGV   79 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcce
Confidence            467889999999876 9999999999999999999999999999999999999 999999999988654321   11222


Q ss_pred             Chhh--------HHHHHHHHHHHHH------------HHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED--------RVENIRRIGEVAK------------LFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~--------~~~~~~~~~~~~~------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ...+        .++++.+++.+..            +...+.+     ..+..++.++++...++++++..+.+  +++
T Consensus        80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i--~vl  157 (245)
T COG4555          80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI--LVL  157 (245)
T ss_pred             ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe--EEE
Confidence            1111        1233333222111            1111111     12244567788888999999999998  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+|++.++-+..+.+.+-+++
T Consensus       158 DEP~sGLDi~~~r~~~dfi~q  178 (245)
T COG4555         158 DEPTSGLDIRTRRKFHDFIKQ  178 (245)
T ss_pred             cCCCCCccHHHHHHHHHHHHH
Confidence            999999998888777665554

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.85  E-value=7.7e-22  Score=172.91  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~  151 (234)
                      ++++++|+++.|++..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|.++....   ...+++
T Consensus         6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~   84 (306)
T PRK13537          6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGV   84 (306)
T ss_pred             ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEE
Confidence            47889999999998999999999999999999999999999999999999998 99999999999875311   011122


Q ss_pred             Chhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      .+++        ..+++.+..            .+..++...++.     .+..++.+.++....+++++..+.+  +++
T Consensus        85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l--llL  162 (306)
T PRK13537         85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV--LVL  162 (306)
T ss_pred             EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE--EEE
Confidence            1111        112221111            111122222221     1233455667777899999999999  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+...++.+++.+++
T Consensus       163 DEPt~gLD~~~~~~l~~~l~~  183 (306)
T PRK13537        163 DEPTTGLDPQARHLMWERLRS  183 (306)
T ss_pred             eCCCcCCCHHHHHHHHHHHHH
Confidence            999999998888888888765

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.1e-21  Score=175.28  Aligned_cols=148  Identities=22%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-------
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-------  146 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-------  146 (234)
                      .++++++|++|+|+++++|+++||++.+||+++|+|.||||||||+|+|+|.++ |++|+|+++|+.+.....       
T Consensus         6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCC
Confidence            357899999999999999999999999999999999999999999999999998 999999999998763111       


Q ss_pred             -----ccC--------------CCChh------hHHHHHHHHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhC
Q 026725          147 -----RDL--------------SFKAE------DRVENIRRIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       147 -----~~~--------------~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll  196 (234)
                           +++              +..+.      ++...++   ....++...+.     ..+..++...++..++++++.
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~---~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~  161 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR---RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS  161 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHH---HHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence                 010              11100      0111111   22233333332     112333445677888999988


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ....+  +++|||++.|..+....||+.+++
T Consensus       162 ~~arl--lIlDEPTaaLt~~E~~~Lf~~ir~  190 (500)
T COG1129         162 FDARV--LILDEPTAALTVKETERLFDLIRR  190 (500)
T ss_pred             cCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            88887  899999999999999999998875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.85  E-value=1.1e-21  Score=163.62  Aligned_cols=148  Identities=22%  Similarity=0.219  Sum_probs=104.5

Q ss_pred             ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026725           77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------  145 (234)
                      ++++|+++.|++    ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....       
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~   79 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAF   79 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHH
Confidence            357899999976    689999999999999999999999999999999999998 89999999998764211       


Q ss_pred             -cccCCCChh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026725          146 -NRDLSFKAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 -~~~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                       ...+++.++        ...+++...            ..+...+..+++..     ...++.+.++....+++++..+
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (218)
T cd03255          80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP  159 (218)
T ss_pred             HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence             011111111        111111110            01222233333321     1234556667778899999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||+..++......+++.+++
T Consensus       160 ~l--llLDEP~~~LD~~~~~~l~~~l~~  185 (218)
T cd03255         160 KI--ILADEPTGNLDSETGKEVMELLRE  185 (218)
T ss_pred             CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            98  899999999988888888777764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.85  E-value=8.6e-22  Score=174.86  Aligned_cols=149  Identities=18%  Similarity=0.201  Sum_probs=105.6

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      +++++|+++.|++    ..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....      
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTK   79 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHH
Confidence            3678999999952    479999999999999999999999999999999999988 99999999999875321      


Q ss_pred             -cccCCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026725          146 -NRDLSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 -~~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                       ...+++.+++        ..+++...            ..+...+...++..     ...++.+.+++..++++++..+
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence             1112222111        11111110            01122222223211     1223456677778999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||++.|+......+++.+++
T Consensus       160 ~i--LLlDEPts~LD~~t~~~i~~lL~~  185 (343)
T TIGR02314       160 KV--LLCDEATSALDPATTQSILELLKE  185 (343)
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            98  899999999988888887776664

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=8.2e-22  Score=175.98  Aligned_cols=148  Identities=18%  Similarity=0.075  Sum_probs=107.7

Q ss_pred             cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCC
Q 026725           76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFK  152 (234)
Q Consensus        76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~  152 (234)
                      .++++|+++.| ++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  ..+++.
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v   81 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMV   81 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEE
Confidence            47889999999 78889999999999999999999999999999999999988 999999999998753211  111111


Q ss_pred             hhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          153 AED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       153 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      .++        ..+++.+.            ..+...+...++..     ...++.+.+++...+++++..+.+  +++|
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l--lLLD  159 (356)
T PRK11650         82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV--FLFD  159 (356)
T ss_pred             eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence            111        11222110            01122222223211     123455667788899999999999  8999


Q ss_pred             CChhhhhhcchhhHHHHHH
Q 026725          208 VPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~  226 (234)
                      ||++.|+...+..+++.++
T Consensus       160 EP~s~LD~~~r~~l~~~l~  178 (356)
T PRK11650        160 EPLSNLDAKLRVQMRLEIQ  178 (356)
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999998888888877665

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.85  E-value=2.2e-21  Score=161.50  Aligned_cols=148  Identities=15%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------cc
Q 026725           77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NR  147 (234)
Q Consensus        77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~  147 (234)
                      ++++|+++.|++  ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....       ..
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHH
Confidence            678999999964  469999999999999999999999999999999999988 89999999998764210       01


Q ss_pred             cCCCChhh--------HHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026725          148 DLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       148 ~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++.+++        ..+++..            ...+...+...++..     ...++.+.++....+++++..+.+ 
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-  159 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL-  159 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            11111111        1111110            001122222222211     123345566777889999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..++....+.+++.+++
T Consensus       160 -lllDEPt~~LD~~~~~~l~~~l~~  183 (216)
T TIGR00960       160 -LLADEPTGNLDPELSRDIMRLFEE  183 (216)
T ss_pred             -EEEeCCCCcCCHHHHHHHHHHHHH
Confidence             899999999988888888877764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=9.1e-22  Score=175.31  Aligned_cols=149  Identities=17%  Similarity=0.198  Sum_probs=108.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFK  152 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~  152 (234)
                      ++++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.....  +.+++.
T Consensus         5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v   83 (351)
T PRK11432          5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMV   83 (351)
T ss_pred             cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEE
Confidence            47889999999998889999999999999999999999999999999999998 999999999998753211  111111


Q ss_pred             hhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          153 AED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       153 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      .++        ..+++.+.            ..+.......++..     ...++.+.+++...+++++..+.+  +++|
T Consensus        84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l--LLLD  161 (351)
T PRK11432         84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV--LLFD  161 (351)
T ss_pred             eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEc
Confidence            111        11222110            01112222222211     123455667778899999999999  8999


Q ss_pred             CChhhhhhcchhhHHHHHH
Q 026725          208 VPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~  226 (234)
                      ||+..|+...++.+++.++
T Consensus       162 EP~s~LD~~~r~~l~~~l~  180 (351)
T PRK11432        162 EPLSNLDANLRRSMREKIR  180 (351)
T ss_pred             CCcccCCHHHHHHHHHHHH
Confidence            9999999888888877765

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.85  E-value=1e-21  Score=175.10  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=108.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFK  152 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~  152 (234)
                      ..++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  +.+++.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v   81 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIV   81 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEE
Confidence            35889999999998889999999999999999999999999999999999988 999999999998753211  111111


Q ss_pred             hhh--------HHHHHHHH------------HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          153 AED--------RVENIRRI------------GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       153 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      .++        ..+++.+.            ..+..++...++...     ..++.+.+++...+++++..+.+  +++|
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l--lLLD  159 (353)
T TIGR03265        82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL--LLLD  159 (353)
T ss_pred             eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence            111        11222110            112222223332211     22355667778899999999998  8999


Q ss_pred             CChhhhhhcchhhHHHHHHc
Q 026725          208 VPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||+..++...+..+++.+++
T Consensus       160 EP~s~LD~~~r~~l~~~L~~  179 (353)
T TIGR03265       160 EPLSALDARVREHLRTEIRQ  179 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999988888887776653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.85  E-value=2.1e-21  Score=163.70  Aligned_cols=148  Identities=19%  Similarity=0.172  Sum_probs=104.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------cccC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRDL  149 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~~  149 (234)
                      ++++|+++.|++..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....       ...+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcce
Confidence            357899999988889999999999999999999999999999999999998 89999999998764210       0111


Q ss_pred             CCChhh--------HHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026725          150 SFKAED--------RVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      ++.+++        ..+++...             ..+...+...++..     ...++.+.++....+++++..+.+  
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l--  157 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL--  157 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            121111        11111110             01112222233211     122345666777889999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++......+++.+++
T Consensus       158 lllDEPt~~LD~~~~~~l~~~l~~  181 (235)
T cd03261         158 LLYDEPTAGLDPIASGVIDDLIRS  181 (235)
T ss_pred             EEecCCcccCCHHHHHHHHHHHHH
Confidence            899999999988888888777764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.85  E-value=3.9e-21  Score=170.65  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=110.0

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~  151 (234)
                      .+++++|+++.|++..+++|+||+|++|++++|+||||||||||+++|+|++. |++|+|.++|.++....   ...+++
T Consensus        40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~  118 (340)
T PRK13536         40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGV  118 (340)
T ss_pred             eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEE
Confidence            47999999999999999999999999999999999999999999999999998 99999999998875311   111122


Q ss_pred             Chhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      .+++        ..+++....            .+..++..+++.     .+..++.+.++....+++++..+.+  +++
T Consensus       119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l--LiL  196 (340)
T PRK13536        119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL--LIL  196 (340)
T ss_pred             EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            1111        112211110            011122222221     1233456667778899999999998  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+...+..+++.+++
T Consensus       197 DEPt~gLD~~~r~~l~~~l~~  217 (340)
T PRK13536        197 DEPTTGLDPHARHLIWERLRS  217 (340)
T ss_pred             ECCCCCCCHHHHHHHHHHHHH
Confidence            999999999888888888865

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.84  E-value=1.5e-21  Score=175.21  Aligned_cols=151  Identities=15%  Similarity=0.123  Sum_probs=109.4

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSF  151 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~  151 (234)
                      .++++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....  +.+++
T Consensus        12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~   90 (375)
T PRK09452         12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNT   90 (375)
T ss_pred             CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEE
Confidence            457899999999998889999999999999999999999999999999999998 999999999998753211  11111


Q ss_pred             Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ..+        ...+++.+.            ..+..++...++..     ...++.+.+++...+++++..+.+  +++
T Consensus        91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l--lLL  168 (375)
T PRK09452         91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV--LLL  168 (375)
T ss_pred             EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            111        111222110            01122222222221     122345667778899999999998  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+...+..+++.+++
T Consensus       169 DEP~s~LD~~~r~~l~~~L~~  189 (375)
T PRK09452        169 DESLSALDYKLRKQMQNELKA  189 (375)
T ss_pred             eCCCCcCCHHHHHHHHHHHHH
Confidence            999999998888888877753

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.84  E-value=3.7e-21  Score=159.88  Aligned_cols=148  Identities=19%  Similarity=0.209  Sum_probs=105.1

Q ss_pred             ceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026725           77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD  148 (234)
Q Consensus        77 ~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~  148 (234)
                      ++++|+++.| ++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....       ...
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhh
Confidence            5789999999 46789999999999999999999999999999999999988 89999999998774310       011


Q ss_pred             CCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026725          149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++.+++        ..+++...            ..+...+..+++..     ...++.+.++....+++++..+.+  
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--  158 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL--  158 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--
Confidence            1221111        11111110            01112222222211     123445566777889999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++......+++.+++
T Consensus       159 llLDEPt~~LD~~~~~~l~~~l~~  182 (214)
T TIGR02673       159 LLADEPTGNLDPDLSERILDLLKR  182 (214)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            899999999998888888887764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=2.5e-21  Score=163.13  Aligned_cols=150  Identities=22%  Similarity=0.250  Sum_probs=105.8

Q ss_pred             ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----
Q 026725           75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----  145 (234)
                      ++++++|+++.|++    ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|+++....     
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~   82 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKA   82 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHH
Confidence            46889999999964    579999999999999999999999999999999999988 89999999998764211     


Q ss_pred             ---cccCCCChhh--------HHHHHHHH------------HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCC
Q 026725          146 ---NRDLSFKAED--------RVENIRRI------------GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       146 ---~~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~  197 (234)
                         ...+++.+++        ..+++...            ..+...+...++...     ..++.+.++....++.++.
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~  162 (233)
T PRK11629         83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN  162 (233)
T ss_pred             HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence               0111111111        11111110            011222333333211     2234456667788899999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..|+......+++.+++
T Consensus       163 ~p~l--llLDEPt~~LD~~~~~~l~~~l~~  190 (233)
T PRK11629        163 NPRL--VLADEPTGNLDARNADSIFQLLGE  190 (233)
T ss_pred             CCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9988  899999999988888888777654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.2e-21  Score=158.30  Aligned_cols=78  Identities=26%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      +++.+|++++..++.+++++||++++||+++|+||||||||||+|.|+|.+. |++|++.++|.++..       +.+.+
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~-------~~~~~   72 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNS-------WPPEE   72 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhh-------CCHHH
Confidence            4678999999999999999999999999999999999999999999999998 999999999999874       55555


Q ss_pred             HHHHHH
Q 026725          156 RVENIR  161 (234)
Q Consensus       156 ~~~~~~  161 (234)
                      ++..+.
T Consensus        73 lA~~ra   78 (259)
T COG4559          73 LARHRA   78 (259)
T ss_pred             HHHHhh
Confidence            554433

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.84  E-value=1.1e-20  Score=156.94  Aligned_cols=148  Identities=21%  Similarity=0.219  Sum_probs=105.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~  154 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....  ...+++.++
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            357899999988889999999999999999999999999999999999988 89999999998864211  011122211


Q ss_pred             hH--------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 DR--------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 ~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      +.        .+++...            ..+...+..+++..     ...++.+.++....+++++..+.+  +++|||
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~--lllDEP  157 (213)
T cd03259          80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL--LLLDEP  157 (213)
T ss_pred             chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            11        1111100            01112222223211     123455667777889999999988  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++....+.+++.+++
T Consensus       158 t~~LD~~~~~~l~~~l~~  175 (213)
T cd03259         158 LSALDAKLREELREELKE  175 (213)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999998888888887764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.84  E-value=5.3e-21  Score=161.01  Aligned_cols=148  Identities=18%  Similarity=0.178  Sum_probs=104.6

Q ss_pred             ceeeceeeecCCc----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026725           77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------  145 (234)
                      ++++|+++.|++.    ++++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....       
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHH
Confidence            6789999999876    89999999999999999999999999999999999998 89999999998864210       


Q ss_pred             cccCCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCC
Q 026725          146 NRDLSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       146 ~~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ...+++.+++        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            0111111111        11111110            01111222222211     12234556677788899999998


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||+..++......+++.+++
T Consensus       161 l--llLDEP~~~LD~~~~~~l~~~l~~  185 (233)
T cd03258         161 V--LLCDEATSALDPETTQSILALLRD  185 (233)
T ss_pred             E--EEecCCCCcCCHHHHHHHHHHHHH
Confidence            8  899999999988888888877764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=2.8e-21  Score=171.88  Aligned_cols=149  Identities=16%  Similarity=0.196  Sum_probs=106.4

Q ss_pred             cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      +++++|++++|+    .+.+++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++....      
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~   79 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRK   79 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHH
Confidence            367899999997    4679999999999999999999999999999999999998 89999999998875310      


Q ss_pred             -cccCCCChh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026725          146 -NRDLSFKAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 -~~~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                       ...+++.++        ...+++...            ..+...+...++..     ...++.+.++....+++++..+
T Consensus        80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  159 (343)
T PRK11153         80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence             011111111        111111110            01122233333221     1234556677778899999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||+..|+......+++.+++
T Consensus       160 ~i--LlLDEPts~LD~~~~~~l~~~L~~  185 (343)
T PRK11153        160 KV--LLCDEATSALDPATTRSILELLKD  185 (343)
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            98  899999999998888888887764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.84  E-value=4.6e-21  Score=160.08  Aligned_cols=147  Identities=20%  Similarity=0.210  Sum_probs=103.5

Q ss_pred             ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026725           77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------  145 (234)
                      ++++|+++.|++    .++++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....       
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHH
Confidence            578899999964    579999999999999999999999999999999999988 89999999998764210       


Q ss_pred             c-ccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026725          146 N-RDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 ~-~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      . ..+++.+++        ..+++..            ...+...+..+++..     ...++.+.++....++.++..+
T Consensus        81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence            0 111111111        1111110            001112222233211     1234555667778899999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      .+  +++|||+..|+......+++.++
T Consensus       161 ~i--lllDEPt~~LD~~~~~~l~~~l~  185 (221)
T TIGR02211       161 SL--VLADEPTGNLDNNNAKIIFDLML  185 (221)
T ss_pred             CE--EEEeCCCCcCCHHHHHHHHHHHH
Confidence            98  89999999998888888887776

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.84  E-value=1.2e-21  Score=177.14  Aligned_cols=148  Identities=18%  Similarity=0.235  Sum_probs=105.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      +++++|+++.|+++.+++++||++++||+++|+||||||||||+|+|+|+++ |.+|+|+++|+++....    ...+++
T Consensus         3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~   81 (402)
T PRK09536          3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVAS   81 (402)
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEE
Confidence            6889999999999999999999999999999999999999999999999998 99999999998875311    011111


Q ss_pred             ChhhH--------HHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          152 KAEDR--------VENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       152 ~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++.        .+++..                ...+...+...++.     ....++.+.+++..++++++..+.+ 
T Consensus        82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i-  160 (402)
T PRK09536         82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV-  160 (402)
T ss_pred             EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE-
Confidence            11110        011000                00111122222221     1233455667777899999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|||+..|+......+++.++
T Consensus       161 -LLLDEPtsgLD~~~~~~l~~lL~  183 (402)
T PRK09536        161 -LLLDEPTASLDINHQVRTLELVR  183 (402)
T ss_pred             -EEEECCcccCCHHHHHHHHHHHH
Confidence             89999999998887777776655

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=5.8e-22  Score=160.27  Aligned_cols=149  Identities=14%  Similarity=0.217  Sum_probs=108.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----ccCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~~~  150 (234)
                      .+.++|+.++|+.+++++++||++++||+++++|||||||||.+.++.|+.. |++|.|.+++.|++..+-     ..++
T Consensus         4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGig   82 (243)
T COG1137           4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIG   82 (243)
T ss_pred             EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcc
Confidence            5778999999999999999999999999999999999999999999999998 999999999999986431     1245


Q ss_pred             CChhhHH--------HHHHHHH--------------HHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceE
Q 026725          151 FKAEDRV--------ENIRRIG--------------EVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       151 ~~~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      |-+++..        +++..+.              ....++..+.+..+     ..++.+.+.+.++|+++...+.+  
T Consensus        83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f--  160 (243)
T COG1137          83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF--  160 (243)
T ss_pred             cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE--
Confidence            5555432        1111111              11123333332211     33455667778999999998888  


Q ss_pred             EEEeCChhhhhhcch---hhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDP---KGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~---~~l~~~~~~  227 (234)
                      +++|+|+...+.-..   +.+-+.++.
T Consensus       161 iLLDEPFAGVDPiaV~dIq~iI~~L~~  187 (243)
T COG1137         161 ILLDEPFAGVDPIAVIDIQRIIKHLKD  187 (243)
T ss_pred             EEecCCccCCCchhHHHHHHHHHHHHh
Confidence            899999999865443   444444444

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.84  E-value=6.3e-21  Score=159.30  Aligned_cols=148  Identities=15%  Similarity=0.236  Sum_probs=104.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~  153 (234)
                      ++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++....   ...+++.+
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEec
Confidence            367899999998899999999999999999999999999999999999988 89999999997763210   00111111


Q ss_pred             hh--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 ED--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++        ..+++...            ..+...+..+++.     ....++.+.++....+++++..+.+  +++||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l--lllDE  157 (220)
T cd03265          80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV--LFLDE  157 (220)
T ss_pred             CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            11        11111100            0111122222221     1123455666777889999999998  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..|+....+.+++.+++
T Consensus       158 Pt~~LD~~~~~~l~~~l~~  176 (220)
T cd03265         158 PTIGLDPQTRAHVWEYIEK  176 (220)
T ss_pred             CccCCCHHHHHHHHHHHHH
Confidence            9999988888888877754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.3e-21  Score=176.82  Aligned_cols=172  Identities=16%  Similarity=0.160  Sum_probs=119.0

Q ss_pred             cCccccccccccccccccccccccceeeccccccccccccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCC
Q 026725           33 SGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSG  112 (234)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nG  112 (234)
                      ..+++++|+|+.++.++.+....                    .++..++...|+...+++++||++++||+++|+||||
T Consensus         5 i~~~~~~k~fg~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NG   64 (400)
T PRK10070          5 LEIKNLYKIFGEHPQRAFKYIEQ--------------------GLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSG   64 (400)
T ss_pred             EEEeeeEEecCCChHHHHHHHhc--------------------cccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCC
Confidence            46788999999977655443322                    1333445667777789999999999999999999999


Q ss_pred             CcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccCCCChh--------hHHHHHHHH------------H
Q 026725          113 SGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDLSFKAE--------DRVENIRRI------------G  164 (234)
Q Consensus       113 sGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~~~~~~--------~~~~~~~~~------------~  164 (234)
                      ||||||+|+|+|+++ |++|+|+++|+++....        ...+++.++        ...+++...            .
T Consensus        65 sGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~  143 (400)
T PRK10070         65 SGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE  143 (400)
T ss_pred             chHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            999999999999998 99999999998875311        011122111        111211110            1


Q ss_pred             HHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          165 EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       165 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+...+...++..     ...++.+.++....+++++..+.+  +++|||+..|+....+.+++.+++
T Consensus       144 ~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i--LLLDEPts~LD~~~r~~l~~~L~~  209 (400)
T PRK10070        144 KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI--LLMDEAFSALDPLIRTEMQDELVK  209 (400)
T ss_pred             HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHHHHHHHHHHHH
Confidence            1222233333321     123455667778889999999998  899999999998888888877753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.84  E-value=8.3e-21  Score=157.68  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=103.3

Q ss_pred             ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026725           77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD  148 (234)
Q Consensus        77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~  148 (234)
                      ++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....       ...
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHh
Confidence            357899999964 679999999999999999999999999999999999988 89999999998764210       001


Q ss_pred             CCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026725          149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++.+++        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  157 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI--  157 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE--
Confidence            1111111        11111100            01112222222211     122345566677889999999998  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++....+.+++.+++
T Consensus       158 lllDEPt~~LD~~~~~~~~~~l~~  181 (214)
T cd03292         158 LIADEPTGNLDPDTTWEIMNLLKK  181 (214)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHH
Confidence            899999999998888888887764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.83  E-value=9e-21  Score=158.59  Aligned_cols=148  Identities=16%  Similarity=0.185  Sum_probs=103.3

Q ss_pred             ceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026725           77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD  148 (234)
Q Consensus        77 ~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~  148 (234)
                      ++++|+++.| ++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....       ...
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhh
Confidence            5788999999 67789999999999999999999999999999999999998 89999999998764210       011


Q ss_pred             CCCChhh--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++.+++        ..+++...            ..+...+...++.     ....++.+.++....+++++..+.+  
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  158 (222)
T PRK10908         81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV--  158 (222)
T ss_pred             eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE--
Confidence            1111111        11111110            0111122222221     1123345566777889999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..|+....+.+++.+++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~  182 (222)
T PRK10908        159 LLADEPTGNLDDALSEGILRLFEE  182 (222)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHH
Confidence            899999999988777777776653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.83  E-value=5.6e-21  Score=167.21  Aligned_cols=149  Identities=14%  Similarity=0.157  Sum_probs=106.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFK  152 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~  152 (234)
                      +++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....   ...+++.
T Consensus         4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v   82 (303)
T TIGR01288         4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVV   82 (303)
T ss_pred             EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEE
Confidence            6789999999998899999999999999999999999999999999999998 89999999998763210   0111111


Q ss_pred             hhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          153 AED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       153 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      +++        ..+++....            .+..++...++.     ....++.+.++....+++++..+.+  +++|
T Consensus        83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLD  160 (303)
T TIGR01288        83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL--LILD  160 (303)
T ss_pred             eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence            111        111111100            111122222221     1223455667777889999999998  8999


Q ss_pred             CChhhhhhcchhhHHHHHHc
Q 026725          208 VPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||+..|+......+++.+++
T Consensus       161 EPt~gLD~~~~~~l~~~l~~  180 (303)
T TIGR01288       161 EPTTGLDPHARHLIWERLRS  180 (303)
T ss_pred             CCCcCCCHHHHHHHHHHHHH
Confidence            99999988888888887764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.83  E-value=8.8e-21  Score=158.26  Aligned_cols=148  Identities=18%  Similarity=0.214  Sum_probs=103.7

Q ss_pred             ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCC
Q 026725           77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~  151 (234)
                      ++++|+++.|++  .++++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.++....   ...+++
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEE
Confidence            357899999986  789999999999999999999999999999999999988 89999999998764210   001111


Q ss_pred             Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      .++        ...+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +++
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lll  157 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV--LLL  157 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            111        111111110            01112222222211     123345566677889999999988  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..++......+++.+++
T Consensus       158 DEP~~~LD~~~~~~l~~~l~~  178 (220)
T cd03263         158 DEPTSGLDPASRRAIWDLILE  178 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            999999988888888777663

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.83  E-value=2e-20  Score=156.26  Aligned_cols=147  Identities=18%  Similarity=0.204  Sum_probs=105.3

Q ss_pred             ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC
Q 026725           77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK  152 (234)
Q Consensus        77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~  152 (234)
                      ++++|+++.|++    ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++... ...+++.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~-~~~i~~v   78 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTGP-GPDRGYV   78 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccc-cCcEEEE
Confidence            357899999987    789999999999999999999999999999999999988 8999999999876421 1111111


Q ss_pred             hh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          153 AE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       153 ~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      ++        ...+++...            ..+...+...++.     ....++.+.++....+++++..+.+  +++|
T Consensus        79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--llLD  156 (220)
T cd03293          79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV--LLLD  156 (220)
T ss_pred             ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEC
Confidence            11        111111110            0112222333321     1233455667778889999999988  8999


Q ss_pred             CChhhhhhcchhhHHHHHHc
Q 026725          208 VPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||+..++......+++.+++
T Consensus       157 EPt~~LD~~~~~~~~~~l~~  176 (220)
T cd03293         157 EPFSALDALTREQLQEELLD  176 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHH
Confidence            99999999888888887764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.83  E-value=7.7e-21  Score=159.51  Aligned_cols=150  Identities=19%  Similarity=0.174  Sum_probs=105.0

Q ss_pred             ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----
Q 026725           75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----  145 (234)
                      ++++++|+++.|++    ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....     
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHH
Confidence            46889999999975    359999999999999999999999999999999999988 89999999998764210     


Q ss_pred             ---cccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026725          146 ---NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       146 ---~~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~  197 (234)
                         ...+++.+++        ..+++..            ...+...+...++.     ....++.+.++....+++++.
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~  163 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG  163 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence               0111111111        1111110            00111222222221     112345556677788999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..|+......+++.+++
T Consensus       164 ~p~l--lllDEPt~~LD~~~~~~l~~~l~~  191 (228)
T PRK10584        164 RPDV--LFADEPTGNLDRQTGDKIADLLFS  191 (228)
T ss_pred             CCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9988  899999999988888888887753

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.83  E-value=7e-21  Score=157.23  Aligned_cols=146  Identities=21%  Similarity=0.174  Sum_probs=102.3

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------ccccCC
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLS  150 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------~~~~~~  150 (234)
                      ++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...        ....++
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            3688999988889999999999999999999999999999999999988 8999999999885310        001111


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026725          151 FKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVF  205 (234)
Q Consensus       151 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~  205 (234)
                      +..++        ..+++..            ...+...+...++.     ....++.+.++....+++++..+.+  ++
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l--ll  157 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL--IL  157 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EE
Confidence            11111        1111110            00112222222221     1123445566677889999999998  89


Q ss_pred             EeCChhhhhhcchhhHHHHHHc
Q 026725          206 MDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       206 ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +|||+..++....+.+++.+++
T Consensus       158 lDEPt~~LD~~~~~~l~~~l~~  179 (206)
T TIGR03608       158 ADEPTGSLDPKNRDEVLDLLLE  179 (206)
T ss_pred             EeCCcCCCCHHHHHHHHHHHHH
Confidence            9999999988888888877764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.83  E-value=1.3e-20  Score=158.18  Aligned_cols=151  Identities=15%  Similarity=0.150  Sum_probs=106.4

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++++|+++.|++.++++++||++++||+++|+||||||||||+++|+|+++ |.+|+|.++|.++....    ...+
T Consensus         5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEcCcCCHHHHHhcc
Confidence            347889999999998889999999999999999999999999999999999887 89999999998764210    0011


Q ss_pred             CCChh-------hHHHHHHHH----------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          150 SFKAE-------DRVENIRRI----------GEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       150 ~~~~~-------~~~~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ++..+       ...+++...          ..+...+...++.      ....++.+.++....+++++..+.+  +++
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lll  161 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV--LLL  161 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            11111       111211110          0111222222221      1123345566677889999999998  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+|+..|+....+.+++.+++
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        162 DEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             eCCcccCCHHHHHHHHHHHHH
Confidence            999999988887777766553

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.83  E-value=2.4e-21  Score=161.49  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=103.9

Q ss_pred             ceeeceeeecCCc----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccC
Q 026725           77 AKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDL  149 (234)
Q Consensus        77 ~~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~  149 (234)
                      ++++|+++.|++.    ++++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++....   ...+
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhE
Confidence            5788999999876    79999999999999999999999999999999999988 89999999998764210   0011


Q ss_pred             CCChh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          150 SFKAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       150 ~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++.++        ...+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--l  158 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV--L  158 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111        111111110            01111222222211     122345566677888999999988  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..++......+++.+++
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~~  181 (218)
T cd03266         159 LLDEPTTGLDVMATRALREFIRQ  181 (218)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHHH
Confidence            99999999998888888877764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.83  E-value=2.7e-20  Score=154.61  Aligned_cols=148  Identities=18%  Similarity=0.130  Sum_probs=105.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~~  154 (234)
                      ++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++.....  ..+++.++
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEec
Confidence            357899999988889999999999999999999999999999999999988 899999999987642110  11111111


Q ss_pred             h--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 D--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 ~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      +        ..+++...            ..+...+...++.     ....++.+.++....++.++..+.+  +++|||
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lllDEP  157 (213)
T cd03301          80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV--FLMDEP  157 (213)
T ss_pred             ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            1        11111100            0111222222221     1123455666777888999999988  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++......+++.+++
T Consensus       158 t~~LD~~~~~~l~~~l~~  175 (213)
T cd03301         158 LSNLDAKLRVQMRAELKR  175 (213)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999998888888887764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.83  E-value=2.9e-20  Score=155.24  Aligned_cols=148  Identities=14%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~  151 (234)
                      ++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++....     ...+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            357899999988889999999999999999999999999999999999998 89999999998764211     011122


Q ss_pred             Chhh--------HHHHHHHH----------HHHHHHHHhc-Cc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          152 KAED--------RVENIRRI----------GEVAKLFADA-GV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       152 ~~~~--------~~~~~~~~----------~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      .+++        ..+++...          ..+...+... .+     .....++.+.++....+++++..+.+  +++|
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllD  157 (222)
T cd03224          80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL--LLLD  157 (222)
T ss_pred             eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEC
Confidence            1111        11111100          0011111111 11     11123445566777889999999988  8999


Q ss_pred             CChhhhhhcchhhHHHHHHc
Q 026725          208 VPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||+..|+......+++.+++
T Consensus       158 EPt~~LD~~~~~~l~~~l~~  177 (222)
T cd03224         158 EPSEGLAPKIVEEIFEAIRE  177 (222)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999888888888764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.83  E-value=4.3e-21  Score=171.60  Aligned_cols=149  Identities=18%  Similarity=0.160  Sum_probs=107.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc--cEEEEcCcccccccc--ccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK--LTYILDGDNCRHGLN--RDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~--G~i~~~g~~v~~~~~--~~~~~  151 (234)
                      -++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++  |+|.++|+++.....  +.+++
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~   83 (362)
T TIGR03258         5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLAL   83 (362)
T ss_pred             EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEE
Confidence            3678999999998889999999999999999999999999999999999988 999  999999998753211  11111


Q ss_pred             Chhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ..++        ..+++.+.            ..+..++...++..     ...++.+.+++...+++++..+.+  +++
T Consensus        84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l--lLL  161 (362)
T TIGR03258        84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV--LLL  161 (362)
T ss_pred             EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            1111        11222110            01222222222211     123355667778899999999999  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+...++.+++.+++
T Consensus       162 DEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             cCccccCCHHHHHHHHHHHHH
Confidence            999999998888888887653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=1.6e-20  Score=149.96  Aligned_cols=146  Identities=17%  Similarity=0.178  Sum_probs=106.8

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      +.++++|+.++||...+|+++|++..+|+++.|||-|||||||++|||+-+.. |+.|.|.++|+.++.....+-...+.
T Consensus         5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeC
Confidence            46788999999999999999999999999999999999999999999998777 99999999999987443333223333


Q ss_pred             hHHHHHHHHHHHHHHHHhcCceEEEec-------------------------------------------CcccHHHHHH
Q 026725          155 DRVENIRRIGEVAKLFADAGVICIACL-------------------------------------------ISPYRKDRDA  191 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~  191 (234)
                      ++++.-+.-.+.+++||.+++....+.                                           +.+..++..+
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI  163 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI  163 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence            443333333478899999886422110                                           1122334456


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~  223 (234)
                      ++++.-++.+  .++|+|++.|+..-..+..+
T Consensus       164 ARaLameP~v--mLFDEPTSALDPElVgEVLk  193 (256)
T COG4598         164 ARALAMEPEV--MLFDEPTSALDPELVGEVLK  193 (256)
T ss_pred             HHHHhcCCce--EeecCCcccCCHHHHHHHHH
Confidence            6776666666  78999999995554444333

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.83  E-value=1.7e-20  Score=147.23  Aligned_cols=115  Identities=16%  Similarity=0.139  Sum_probs=97.3

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~  156 (234)
                      ++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|+++|+..       +++.++  
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~-------i~~~~~--   70 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVK-------IGYFEQ--   70 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEE-------EEEEcc--
Confidence            357899999987789999999999999999999999999999999999998 8999999988521       122222  


Q ss_pred             HHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                                              ++.+..+....+++++..+.+  +++|||+..++......+++.+++
T Consensus        71 ------------------------lS~G~~~rv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          71 ------------------------LSGGEKMRLALAKLLLENPNL--LLLDEPTNHLDLESIEALEEALKE  115 (144)
T ss_pred             ------------------------CCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence                                    445566677789999999988  899999999999888888888875

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=4.7e-21  Score=172.22  Aligned_cols=149  Identities=19%  Similarity=0.163  Sum_probs=107.0

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSF  151 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~  151 (234)
                      .++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+.+ |++|+|+++|+++.....  +.+++
T Consensus        17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~   95 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINM   95 (377)
T ss_pred             CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEE
Confidence            347899999999998889999999999999999999999999999999999988 999999999998753211  11111


Q ss_pred             Chhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ..++        ..+++.+.            ..+...+...++..     ...++.+.+++...+++++..+.+  +++
T Consensus        96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l--LLL  173 (377)
T PRK11607         96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL--LLL  173 (377)
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            1111        11222110            01122222223221     123455667778899999999999  899


Q ss_pred             eCChhhhhhcchhhHHHHH
Q 026725          207 DVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~  225 (234)
                      |||+..|+...+..+++.+
T Consensus       174 DEP~s~LD~~~r~~l~~~l  192 (377)
T PRK11607        174 DEPMGALDKKLRDRMQLEV  192 (377)
T ss_pred             eCCcccCCHHHHHHHHHHH
Confidence            9999999888887776544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.83  E-value=1e-20  Score=156.86  Aligned_cols=146  Identities=19%  Similarity=0.208  Sum_probs=103.3

Q ss_pred             eeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCC
Q 026725           79 STNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFK  152 (234)
Q Consensus        79 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~  152 (234)
                      ++|+++.|++  ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....    ...+++.
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEE
Confidence            5789999987  789999999999999999999999999999999999988 89999999998764210    0112222


Q ss_pred             hhh---------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          153 AED---------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       153 ~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      +++         ..+++...            ..+...+..+++.     ....++.+.++....+++++..+.+  +++
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lll  158 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI--LLL  158 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            111         11111110            0111122222221     1123455667777889999999988  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||++.|+....+.+++.+++
T Consensus       159 DEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         159 DEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             cCCcccCCHHHHHHHHHHHHH
Confidence            999999988888888877753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.83  E-value=1.1e-20  Score=156.45  Aligned_cols=148  Identities=17%  Similarity=0.199  Sum_probs=103.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--ccccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--~~~~~~~~~~  154 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++...  ....+++.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecC
Confidence            357899999988899999999999999999999999999999999999988 8999999999876421  0001111111


Q ss_pred             --------hHHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          155 --------DRVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       155 --------~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                              ...+++...        ..+...+...++..     ...++.+.++....++.++..+.+  +++|||+..|
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~L  157 (208)
T cd03268          80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL--LILDEPTNGL  157 (208)
T ss_pred             CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcccC
Confidence                    111111110        01111222222211     122344556667788999999988  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +....+.+++.+++
T Consensus       158 D~~~~~~l~~~l~~  171 (208)
T cd03268         158 DPDGIKELRELILS  171 (208)
T ss_pred             CHHHHHHHHHHHHH
Confidence            98888888877764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.83  E-value=1.7e-20  Score=155.62  Aligned_cols=148  Identities=13%  Similarity=0.194  Sum_probs=103.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh--
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~--  154 (234)
                      ++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|+++.......+++.++  
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhHHHHccEEEeccCC
Confidence            357899999988889999999999999999999999999999999999988 89999999998763210000111110  


Q ss_pred             ------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          155 ------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       155 ------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                            ...+++...            ..+...+...++.     ....++.+.++....++.++..+.+  +++|||+.
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~--lllDEP~~  157 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL--LILDEPFS  157 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence                  111111110            0111222222221     1122345566667788999999988  89999999


Q ss_pred             hhhhcchhhHHHHHHc
Q 026725          212 VCEARDPKGLYKLARE  227 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~~  227 (234)
                      .++......+++.+++
T Consensus       158 ~LD~~~~~~~~~~l~~  173 (210)
T cd03269         158 GLDPVNVELLKDVIRE  173 (210)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9988888888777764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.83  E-value=1.1e-20  Score=165.24  Aligned_cols=149  Identities=16%  Similarity=0.239  Sum_probs=107.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFK  152 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~  152 (234)
                      .++++|++++|++..+++|+||++++||+++|+||||||||||+|+|+|++. |++|+|.++|.++....   ...+++.
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~   80 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYL   80 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEe
Confidence            3678999999998999999999999999999999999999999999999988 99999999998874311   0111111


Q ss_pred             hhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          153 AED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       153 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                      +++        ..+++....            .+...+..+++.     ....++.+.++....+++++..+.+  +++|
T Consensus        81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--liLD  158 (301)
T TIGR03522        81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV--LILD  158 (301)
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEc
Confidence            111        112111100            111222222321     1123455667777889999999998  8999


Q ss_pred             CChhhhhhcchhhHHHHHHc
Q 026725          208 VPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +|+..|+....+.+++.+++
T Consensus       159 EPt~gLD~~~~~~l~~~l~~  178 (301)
T TIGR03522       159 EPTTGLDPNQLVEIRNVIKN  178 (301)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999998888888887765

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.83  E-value=3.3e-21  Score=156.73  Aligned_cols=134  Identities=19%  Similarity=0.205  Sum_probs=100.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      ++++++|+++.|    +++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++..       +.+.
T Consensus         3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-------~~~~   70 (182)
T cd03215           3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTR-------RSPR   70 (182)
T ss_pred             cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCc-------cCHH
Confidence            368889999998    8999999999999999999999999999999999998 899999999988753       2111


Q ss_pred             hHHHHHHHHHHHHHHHHhc---------CceEEE----ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026725          155 DRVENIRRIGEVAKLFADA---------GVICIA----CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l  221 (234)
                      ...  .+   .+++++|+.         .+....    .++.+.++....+++++..+.+  +++|||+..++....+.+
T Consensus        71 ~~~--~~---~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~l--lllDEP~~~LD~~~~~~l  143 (182)
T cd03215          71 DAI--RA---GIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRV--LILDEPTRGVDVGAKAEI  143 (182)
T ss_pred             HHH--hC---CeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCE--EEECCCCcCCCHHHHHHH
Confidence            100  00   122222221         000000    0445566677889999999998  899999999998888888


Q ss_pred             HHHHHc
Q 026725          222 YKLARE  227 (234)
Q Consensus       222 ~~~~~~  227 (234)
                      ++.+++
T Consensus       144 ~~~l~~  149 (182)
T cd03215         144 YRLIRE  149 (182)
T ss_pred             HHHHHH
Confidence            887764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=1.1e-19  Score=150.15  Aligned_cols=148  Identities=18%  Similarity=0.223  Sum_probs=105.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCC---
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLS---  150 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~---  150 (234)
                      ++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++....   ...++   
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~   80 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLG   80 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeC
Confidence            678999999998889999999999999999999999999999999999988 89999999998764210   00011   


Q ss_pred             ----CCh-hhHHHHHHHH---------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          151 ----FKA-EDRVENIRRI---------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       151 ----~~~-~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                          +.+ ....+++...         ..+...+...++.     ....++.+.++....+++++..+.+  +++|||+.
T Consensus        81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~  158 (204)
T PRK13538         81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL--WILDEPFT  158 (204)
T ss_pred             CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence                100 0111111110         0112222222321     1123455566777889999999998  89999999


Q ss_pred             hhhhcchhhHHHHHHc
Q 026725          212 VCEARDPKGLYKLARE  227 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~~  227 (234)
                      .++......+++.+++
T Consensus       159 ~LD~~~~~~l~~~l~~  174 (204)
T PRK13538        159 AIDKQGVARLEALLAQ  174 (204)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9998888888887764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.83  E-value=4.7e-20  Score=152.45  Aligned_cols=147  Identities=19%  Similarity=0.264  Sum_probs=103.8

Q ss_pred             eeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-cccCCCChhh
Q 026725           78 KSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDLSFKAED  155 (234)
Q Consensus        78 ~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-~~~~~~~~~~  155 (234)
                      +++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...+++.+++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~   79 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQD   79 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecC
Confidence            35789999987 789999999999999999999999999999999999988 99999999998763210 0112222221


Q ss_pred             ---------HHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          156 ---------RVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       156 ---------~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                               ..+++...        ..+...+...++..     ...++.+.++....+++++..+.+  +++|||+..+
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~L  157 (205)
T cd03226          80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL--LIFDEPTSGL  157 (205)
T ss_pred             hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccC
Confidence                     11111110        01122223333221     122345566777889999999988  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +....+.+++.+++
T Consensus       158 D~~~~~~l~~~l~~  171 (205)
T cd03226         158 DYKNMERVGELIRE  171 (205)
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888777754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.83  E-value=4e-20  Score=156.22  Aligned_cols=148  Identities=16%  Similarity=0.224  Sum_probs=104.3

Q ss_pred             ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026725           77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD  148 (234)
Q Consensus        77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~  148 (234)
                      ++++|+++.|++ ..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++....       ...
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhc
Confidence            357899999987 789999999999999999999999999999999999988 89999999998764211       011


Q ss_pred             CCCChhh--------HHHHHHH--------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHh
Q 026725          149 LSFKAED--------RVENIRR--------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l  195 (234)
                      +++.+++        ..+++..                    ...+...+...++.     ....++.+.++....++++
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence            1111111        1111110                    00111122222221     1123455666777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++......+++.+++
T Consensus       160 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  189 (241)
T cd03256         160 MQQPKL--ILADEPVASLDPASSRQVMDLLKR  189 (241)
T ss_pred             hcCCCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888887764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.83  E-value=3.7e-21  Score=158.02  Aligned_cols=137  Identities=19%  Similarity=0.174  Sum_probs=103.5

Q ss_pred             cceeeceeeecCC------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCcccccc-cc
Q 026725           76 VAKSTNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHG-LN  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~-~~  146 (234)
                      .++++|+++.|++      ..+++++||++++|++++|+||||||||||+++|+|++  + |.+|+|.++|+++... ..
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~   81 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFR   81 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhh
Confidence            4678999999975      67999999999999999999999999999999999998  7 8999999999987421 00


Q ss_pred             ccCCCChhh--------HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          147 RDLSFKAED--------RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       147 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ..+++.+++        ..+++..       ....     ..++.+.++....+++++..+.+  +++|||+..++....
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~~i~~-------~~~~-----~~LS~G~~qrv~laral~~~p~i--lllDEP~~~LD~~~~  147 (194)
T cd03213          82 KIIGYVPQDDILHPTLTVRETLMF-------AAKL-----RGLSGGERKRVSIALELVSNPSL--LFLDEPTSGLDSSSA  147 (194)
T ss_pred             heEEEccCcccCCCCCcHHHHHHH-------HHHh-----ccCCHHHHHHHHHHHHHHcCCCE--EEEeCCCcCCCHHHH
Confidence            111222111        1111100       0000     04555667777889999999988  899999999999988


Q ss_pred             hhHHHHHHc
Q 026725          219 KGLYKLARE  227 (234)
Q Consensus       219 ~~l~~~~~~  227 (234)
                      +.+++.+++
T Consensus       148 ~~l~~~l~~  156 (194)
T cd03213         148 LQVMSLLRR  156 (194)
T ss_pred             HHHHHHHHH
Confidence            888888765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.83  E-value=6.9e-20  Score=153.95  Aligned_cols=148  Identities=16%  Similarity=0.114  Sum_probs=103.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~  151 (234)
                      ++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++....     ...+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            357899999998889999999999999999999999999999999999998 89999999998764210     011112


Q ss_pred             Chhh--------HHHHHHHHH---------HHHHHHHhcC------ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          152 KAED--------RVENIRRIG---------EVAKLFADAG------VICIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       152 ~~~~--------~~~~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      .+++        ..+++....         ..........      ......++.+.++....++.++..+.+  +++||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i--lllDE  157 (230)
T TIGR03410        80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL--LLLDE  157 (230)
T ss_pred             eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecC
Confidence            1111        111111000         0011111111      111123345566677888999999988  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..|+....+.+++.+++
T Consensus       158 Pt~~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       158 PTEGIQPSIIKDIGRVIRR  176 (230)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999998888888887764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.83  E-value=6.5e-21  Score=171.01  Aligned_cols=149  Identities=16%  Similarity=0.097  Sum_probs=107.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~  153 (234)
                      .++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....  ...+++..
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~   81 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVF   81 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEe
Confidence            4788999999998889999999999999999999999999999999999998 99999999998874311  01111111


Q ss_pred             hh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 ED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +++||
T Consensus        82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l--LLLDE  159 (369)
T PRK11000         82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDE  159 (369)
T ss_pred             CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence            11        11111110            01222223333321     123455667778899999999998  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..|+...++.+++.+++
T Consensus       160 Pts~LD~~~~~~l~~~L~~  178 (369)
T PRK11000        160 PLSNLDAALRVQMRIEISR  178 (369)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999988888877776653

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=1.1e-20  Score=155.76  Aligned_cols=148  Identities=15%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~  153 (234)
                      ++++|+++.|++.++++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++....   ...+++.+
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~   80 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVG   80 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEec
Confidence            678999999988889999999999999999999999999999999999988 89999999998764210   00111111


Q ss_pred             h--------hHHHHHHHH-------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          154 E--------DRVENIRRI-------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       154 ~--------~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                      +        ...+++...       ..+...+...+..     ....++.+.++....+++++..+.+  +++|+|+..+
T Consensus        81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~--lilDEP~~~L  158 (200)
T PRK13540         81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL--WLLDEPLVAL  158 (200)
T ss_pred             cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCccc
Confidence            0        111111110       0111122222211     1123345566677889999999988  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +......+++.+++
T Consensus       159 D~~~~~~l~~~l~~  172 (200)
T PRK13540        159 DELSLLTIITKIQE  172 (200)
T ss_pred             CHHHHHHHHHHHHH
Confidence            98888888887774

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=3.1e-20  Score=158.80  Aligned_cols=148  Identities=15%  Similarity=0.181  Sum_probs=104.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~~  150 (234)
                      ++++|+++.|++..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....      .....
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~   80 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGPGAERGVVFQNEG   80 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence            678999999988889999999999999999999999999999999999988 89999999998864211      00100


Q ss_pred             CCh-hhHHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          151 FKA-EDRVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       151 ~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                      +.+ ....+++..            ...+...+...++..     ...++.+.++....+++++..+.+  +++|||+..
T Consensus        81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l--llLDEPt~~  158 (255)
T PRK11248         81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL--LLLDEPFGA  158 (255)
T ss_pred             cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcc
Confidence            000 011111110            001222233333211     123455666777889999999988  899999999


Q ss_pred             hhhcchhhHHHHHHc
Q 026725          213 CEARDPKGLYKLARE  227 (234)
Q Consensus       213 l~~R~~~~l~~~~~~  227 (234)
                      |+......+++.+++
T Consensus       159 LD~~~~~~l~~~L~~  173 (255)
T PRK11248        159 LDAFTREQMQTLLLK  173 (255)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            988888888777653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.83  E-value=8.1e-21  Score=156.66  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=101.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccccccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      ++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++  . |.+|+|.++|+++..       ....
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-p~~G~i~~~g~~~~~-------~~~~   72 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITD-------LPPE   72 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CCccEEEECCEECCc-------CCHH
Confidence            35789999998888999999999999999999999999999999999984  5 899999999998763       2211


Q ss_pred             hHHHHHHHHHHHHHHHHhcCce----------EE-EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHH
Q 026725          155 DRVENIRRIGEVAKLFADAGVI----------CI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (234)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~  223 (234)
                      .+...     .+++++|+...+          .. ..++.+.++....++.++..+.+  +++|+|+..++......+++
T Consensus        73 ~~~~~-----~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~  145 (200)
T cd03217          73 ERARL-----GIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDL--AILDEPDSGLDIDALRLVAE  145 (200)
T ss_pred             HHhhC-----cEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHH
Confidence            11100     111122221111          11 23455666777889999999998  89999999998887888777


Q ss_pred             HHHc
Q 026725          224 LARE  227 (234)
Q Consensus       224 ~~~~  227 (234)
                      .+++
T Consensus       146 ~L~~  149 (200)
T cd03217         146 VINK  149 (200)
T ss_pred             HHHH
Confidence            7764

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.83  E-value=7e-20  Score=154.01  Aligned_cols=148  Identities=15%  Similarity=0.241  Sum_probs=103.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~  151 (234)
                      ++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|+++....     ...+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEE
Confidence            357899999998889999999999999999999999999999999999988 89999999998763210     011111


Q ss_pred             Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      .++        ...+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +++
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lll  157 (232)
T cd03218          80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF--LLL  157 (232)
T ss_pred             ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEe
Confidence            111        111111110            01111222222211     122345566677888999999988  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..++......+++.+++
T Consensus       158 DEPt~~LD~~~~~~~~~~l~~  178 (232)
T cd03218         158 DEPFAGVDPIAVQDIQKIIKI  178 (232)
T ss_pred             cCCcccCCHHHHHHHHHHHHH
Confidence            999999998888888886653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.83  E-value=5.3e-20  Score=154.35  Aligned_cols=148  Identities=18%  Similarity=0.146  Sum_probs=105.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc-----ccCCccEEEEcCccccccc------
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll-----~~p~~G~i~~~g~~v~~~~------  145 (234)
                      ++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|++     + |.+|+|.++|+++....      
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-CCCeEEEECCEEhhhcchHHHHH
Confidence            35789999998888999999999999999999999999999999999998     7 89999999998764211      


Q ss_pred             cccCCCChhh-------HHHHHHH-------------HHHHHHHHHhcCceE-------EEecCcccHHHHHHHHHhCCC
Q 026725          146 NRDLSFKAED-------RVENIRR-------------IGEVAKLFADAGVIC-------IACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      ...+++.+++       ..+++..             ...+...+...++..       ...++.+.++....+++++..
T Consensus        80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (227)
T cd03260          80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE  159 (227)
T ss_pred             HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence            0111111111       1111110             001122233333211       133455667777889999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||+..++....+.+++.+++
T Consensus       160 p~l--lllDEPt~~LD~~~~~~l~~~l~~  186 (227)
T cd03260         160 PEV--LLLDEPTSALDPISTAKIEELIAE  186 (227)
T ss_pred             CCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            988  899999999998888888887764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.82  E-value=2e-20  Score=155.34  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=104.1

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccccCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~~~~  150 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...      ....++
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcce
Confidence            357899999988889999999999999999999999999999999999988 8999999999876320      001111


Q ss_pred             CChhh--------HHHHHHHH-------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          151 FKAED--------RVENIRRI-------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       151 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +.+++        ..+++...             ..+...+...++.     ....++.+.++....+++++..+.+  +
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l  157 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV--M  157 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111        11111100             0111122222221     1123455666777889999999988  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..++....+.+++.+++
T Consensus       158 llDEP~~~LD~~~~~~l~~~l~~  180 (213)
T cd03262         158 LFDEPTSALDPELVGEVLDVMKD  180 (213)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHH
Confidence            99999999988888887777763

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.82  E-value=1.3e-20  Score=162.20  Aligned_cols=150  Identities=19%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------cc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~  147 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....       ..
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhh
Confidence            46899999999998889999999999999999999999999999999999988 89999999998764210       01


Q ss_pred             cCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCc
Q 026725          148 DLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       148 ~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      .+++.++        ...+++...             ..+...+...++..     ...++.+.++....++.++..+.+
T Consensus        85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l  164 (269)
T PRK11831         85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL  164 (269)
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            1111111        111111110             01111222222211     123345566777888999999988


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..|+....+.+++.+++
T Consensus       165 --llLDEPt~~LD~~~~~~l~~~l~~  188 (269)
T PRK11831        165 --IMFDEPFVGQDPITMGVLVKLISE  188 (269)
T ss_pred             --EEEcCCCccCCHHHHHHHHHHHHH
Confidence              899999999988888877777664

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=4.1e-20  Score=145.98  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=95.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      +++++++.+.-++..+|+++||++++||+++|+||||||||||+|+++.++. |++|+++|.|+++..       +.++.
T Consensus         3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-p~~G~l~f~Ge~vs~-------~~pea   74 (223)
T COG4619           3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVST-------LKPEA   74 (223)
T ss_pred             chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-CCCceEEEcCccccc-------cChHH
Confidence            3455566666678899999999999999999999999999999999999998 999999999999984       77776


Q ss_pred             HHHHHHHHHHHHHHHHhcCceE-----EE-----------------------------------ecCcccHHHHHHHHHh
Q 026725          156 RVENIRRIGEVAKLFADAGVIC-----IA-----------------------------------CLISPYRKDRDACRSM  195 (234)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~-----~~-----------------------------------~~~~~~~~~~~~~~~l  195 (234)
                      .+.      +++++.|.+.++.     +.                                   .++.+.++.-..++.+
T Consensus        75 ~Rq------~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L  148 (223)
T COG4619          75 YRQ------QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL  148 (223)
T ss_pred             HHH------HHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh
Confidence            665      4555555444321     11                                   1122334444566666


Q ss_pred             CCCCCceEEEEeCChhhhhhcch
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      .-.+.+  +++|+|++.|+....
T Consensus       149 q~~P~I--LLLDE~TsALD~~nk  169 (223)
T COG4619         149 QFMPKI--LLLDEITSALDESNK  169 (223)
T ss_pred             hcCCce--EEecCchhhcChhhH
Confidence            666666  789999999976554

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.82  E-value=2.1e-20  Score=154.22  Aligned_cols=148  Identities=18%  Similarity=0.187  Sum_probs=104.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~  153 (234)
                      ++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++....   ...+++.+
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEec
Confidence            367899999998899999999999999999999999999999999999988 89999999998764210   00111111


Q ss_pred             h--------hHHHHHHHH------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026725          154 E--------DRVENIRRI------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (234)
Q Consensus       154 ~--------~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~  214 (234)
                      +        ...+++...      ..+...+...++.     ....++.+.++....++.++..+.+  +++|||+..++
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD  157 (201)
T cd03231          80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL--WILDEPTTALD  157 (201)
T ss_pred             cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCC
Confidence            0        111111110      0112222222221     1123445566777889999999998  89999999999


Q ss_pred             hcchhhHHHHHHc
Q 026725          215 ARDPKGLYKLARE  227 (234)
Q Consensus       215 ~R~~~~l~~~~~~  227 (234)
                      ......+++.+++
T Consensus       158 ~~~~~~l~~~l~~  170 (201)
T cd03231         158 KAGVARFAEAMAG  170 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.82  E-value=1.2e-19  Score=153.04  Aligned_cols=148  Identities=16%  Similarity=0.191  Sum_probs=103.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~  151 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....     ...+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            357899999988889999999999999999999999999999999999988 89999999998764211     001111


Q ss_pred             Chhh--------HHHHHHHH----------------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhC
Q 026725          152 KAED--------RVENIRRI----------------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSML  196 (234)
Q Consensus       152 ~~~~--------~~~~~~~~----------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll  196 (234)
                      .+++        ..+++...                      ..+...+..+++..     ...++.+.++....+++++
T Consensus        80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  159 (236)
T cd03219          80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA  159 (236)
T ss_pred             EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence            1111        11111100                      01112222222211     1223445566778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++......+++.+++
T Consensus       160 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  188 (236)
T cd03219         160 TDPKL--LLLDEPAAGLNPEETEELAELIRE  188 (236)
T ss_pred             cCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            99988  899999999998888888887764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.82  E-value=4.3e-20  Score=164.77  Aligned_cols=149  Identities=20%  Similarity=0.205  Sum_probs=107.3

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      .++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.....  ..+++..
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~   80 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEe
Confidence            3678999999998899999999999999999999999999999999999988 999999999998753110  1111111


Q ss_pred             hh--------HHHHHHHH----------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          154 ED--------RVENIRRI----------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       154 ~~--------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++        ..+++.+.                ..+...+...++..     ...++.+.+++...+++++..+.+  +
T Consensus        81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l--l  158 (353)
T PRK10851         81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI--L  158 (353)
T ss_pred             cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            11        11111110                01222233233211     123455667778899999999998  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..|+...+..+++.+++
T Consensus       159 LLDEP~s~LD~~~r~~l~~~L~~  181 (353)
T PRK10851        159 LLDEPFGALDAQVRKELRRWLRQ  181 (353)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999998888888777653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.82  E-value=6.1e-20  Score=155.38  Aligned_cols=148  Identities=16%  Similarity=0.218  Sum_probs=103.8

Q ss_pred             ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------ccc
Q 026725           77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NRD  148 (234)
Q Consensus        77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~~~  148 (234)
                      ++++|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....       ...
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            56889999998 7789999999999999999999999999999999999988 89999999998764210       001


Q ss_pred             CCCChhh--------HHHHHHH--------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHh
Q 026725          149 LSFKAED--------RVENIRR--------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l  195 (234)
                      +++.+++        ..+++..                    ...+...+...++.     ....++.+.++....++++
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  160 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL  160 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            1111110        0111100                    00111122222221     1123455667777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++......+++.+++
T Consensus       161 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  190 (243)
T TIGR02315       161 AQQPDL--ILADEPIASLDPKTSKQVMDYLKR  190 (243)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888777776653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.82  E-value=2.6e-20  Score=154.51  Aligned_cols=147  Identities=17%  Similarity=0.199  Sum_probs=103.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~  153 (234)
                      ++++|+++.|++..+++++||++++| +++|+||||||||||+++|+|+++ |.+|+|.++|.++....   ...+++.+
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEec
Confidence            35789999998888999999999999 999999999999999999999988 89999999998764210   00111111


Q ss_pred             h--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 E--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      +        ...+++...            ..+...+...++.     ....++.+.++....+++++..+.+  +++||
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDE  156 (211)
T cd03264          79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI--LIVDE  156 (211)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            1        111111110            0111122222221     1123455566777889999999998  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..++....+.+++.+++
T Consensus       157 Pt~~LD~~~~~~l~~~l~~  175 (211)
T cd03264         157 PTAGLDPEERIRFRNLLSE  175 (211)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999998888888887764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.82  E-value=5.5e-20  Score=155.54  Aligned_cols=148  Identities=19%  Similarity=0.210  Sum_probs=105.1

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~~  150 (234)
                      ++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|+++|.++....      ...++
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceE
Confidence            578999999988889999999999999999999999999999999999988 89999999998864210      00111


Q ss_pred             CChhh--------HHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          151 FKAED--------RVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       151 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +.+++        ..+++...             ..+...+...++..     ...++.+.++....+++++..+.+  +
T Consensus        81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l  158 (240)
T PRK09493         81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL--M  158 (240)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111        11111110             01122222222211     122345566677889999999988  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..++....+.+++.+++
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~  181 (240)
T PRK09493        159 LFDEPTSALDPELRHEVLKVMQD  181 (240)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999888888887753

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.82  E-value=1.3e-19  Score=153.24  Aligned_cols=149  Identities=20%  Similarity=0.209  Sum_probs=105.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~  153 (234)
                      .++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.++....  ...+++.+
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~   80 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVF   80 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEe
Confidence            3678999999998889999999999999999999999999999999999988 89999999998764211  01111111


Q ss_pred             h--------hHHHHHHHH----------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          154 E--------DRVENIRRI----------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       154 ~--------~~~~~~~~~----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +        ...+++...                ..+...+...++.     ....++.+.++....+++++..+.+  +
T Consensus        81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--l  158 (239)
T cd03296          81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV--L  158 (239)
T ss_pred             cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            1        111111100                0111122222221     1123455667777889999999988  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..++....+.+++.+++
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~  181 (239)
T cd03296         159 LLDEPFGALDAKVRKELRRWLRR  181 (239)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999998888888887764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=7.2e-20  Score=154.90  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=99.8

Q ss_pred             ccceeeceeeecCC---------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc
Q 026725           75 TVAKSTNILWHKNS---------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~  145 (234)
                      .+++++|+++.|..         +.+++||||+|++||+++|+|+||||||||.|+|.|++. |++|+|+++|+++..  
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~--   79 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITK--   79 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhh--
Confidence            46788888888842         479999999999999999999999999999999999998 999999999999874  


Q ss_pred             cccCCCChhhHHHHHHHHHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026725          146 NRDLSFKAEDRVENIRRIGEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (234)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~  219 (234)
                           +...++.+      .+..++...++      ...-.++.+.+++-.++++++-.+.+  +..|+|.+.++.....
T Consensus        80 -----~~~~~~~~------~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l--iV~DEpvSaLDvSiqa  146 (268)
T COG4608          80 -----LSKEERRE------RVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL--IVADEPVSALDVSVQA  146 (268)
T ss_pred             -----cchhHHHH------HHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE--EEecCchhhcchhHHH
Confidence                 44333333      22222332222      11123456677888899999988888  8999999999765544


Q ss_pred             h
Q 026725          220 G  220 (234)
Q Consensus       220 ~  220 (234)
                      .
T Consensus       147 q  147 (268)
T COG4608         147 Q  147 (268)
T ss_pred             H
Confidence            4

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=6e-20  Score=158.21  Aligned_cols=149  Identities=16%  Similarity=0.179  Sum_probs=105.7

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-c-----cccC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-L-----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~-----~~~~  149 (234)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++... .     ...+
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhhe
Confidence            3678999999998889999999999999999999999999999999999998 9999999999887310 0     0112


Q ss_pred             CCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          150 SFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       150 ~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      ++.+++.         .+++...            ..+...+...++.     ....++.+.++....++.++..+.+  
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l--  157 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY--  157 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE--
Confidence            2222211         1111100            0011122222221     1223455667777889999999998  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++......+++.+++
T Consensus       158 llLDEPt~~LD~~~~~~l~~~l~~  181 (271)
T PRK13638        158 LLLDEPTAGLDPAGRTQMIAIIRR  181 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            899999999988888888777654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.82  E-value=3.4e-20  Score=154.07  Aligned_cols=145  Identities=17%  Similarity=0.236  Sum_probs=101.8

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh----
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----  154 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~----  154 (234)
                      ++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... ...+++.++    
T Consensus         2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~-~~~i~~v~q~~~~   79 (213)
T cd03235           2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLEKE-RKRIGYVPQRRSI   79 (213)
T ss_pred             cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHHHH-HhheEEecccccc
Confidence            5789999988889999999999999999999999999999999999988 8999999999765210 000001000    


Q ss_pred             ------hHHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEe
Q 026725          155 ------DRVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMD  207 (234)
Q Consensus       155 ------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld  207 (234)
                            ...+++..                ...+...+...++.     ....++.+.++....+++++..+.+  +++|
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllD  157 (213)
T cd03235          80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL--LLLD  157 (213)
T ss_pred             ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEe
Confidence                  01111100                00112222222221     1233455667777889999999998  8999


Q ss_pred             CChhhhhhcchhhHHHHHHc
Q 026725          208 VPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       208 ~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||+..|+......+++.+++
T Consensus       158 EPt~~LD~~~~~~l~~~l~~  177 (213)
T cd03235         158 EPFAGVDPKTQEDIYELLRE  177 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999988888887777654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.82  E-value=9.2e-21  Score=155.93  Aligned_cols=148  Identities=18%  Similarity=0.189  Sum_probs=104.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~  153 (234)
                      ++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++....   ...+++.+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLG   79 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEec
Confidence            357899999998899999999999999999999999999999999999988 89999999998764211   00111111


Q ss_pred             h--------hHHHHHHHHH--------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          154 E--------DRVENIRRIG--------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       154 ~--------~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                      +        ...+++....        .+...+...++.     ....++.+.++....+++++..+.+  +++|||++.
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~  157 (198)
T TIGR01189        80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL--WILDEPTTA  157 (198)
T ss_pred             cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcC
Confidence            1        1111111100        111222222221     1123345566677888999999988  899999999


Q ss_pred             hhhcchhhHHHHHHc
Q 026725          213 CEARDPKGLYKLARE  227 (234)
Q Consensus       213 l~~R~~~~l~~~~~~  227 (234)
                      ++......+++.+++
T Consensus       158 LD~~~~~~l~~~l~~  172 (198)
T TIGR01189       158 LDKAGVALLAGLLRA  172 (198)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            988888888777764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.82  E-value=9.7e-20  Score=146.08  Aligned_cols=134  Identities=20%  Similarity=0.175  Sum_probs=98.8

Q ss_pred             eeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026725           78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (234)
Q Consensus        78 ~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~  156 (234)
                      +++|+++.|+ +..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|....       ++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i-------~~~~q~~   73 (166)
T cd03223           2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDL-------LFLPQRP   73 (166)
T ss_pred             EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceE-------EEECCCC
Confidence            5789999995 4679999999999999999999999999999999999988 89999999874211       1222221


Q ss_pred             HHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .- ..  ..+...+...   ....++.+.++....+++++..+.+  +++|||+..++....+.+++.+++
T Consensus        74 ~~-~~--~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~--lllDEPt~~LD~~~~~~l~~~l~~  136 (166)
T cd03223          74 YL-PL--GTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKF--VFLDEATSALDEESEDRLYQLLKE  136 (166)
T ss_pred             cc-cc--ccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCE--EEEECCccccCHHHHHHHHHHHHH
Confidence            00 00  0000000000   1233455667777889999999988  899999999998888888887765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.82  E-value=2.1e-19  Score=152.08  Aligned_cols=149  Identities=11%  Similarity=0.155  Sum_probs=105.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~  150 (234)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++....     ...++
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIG   80 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCee
Confidence            5788999999988889999999999999999999999999999999999988 89999999998764211     00111


Q ss_pred             CChh--------hHHHHHHHH--------------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCC
Q 026725          151 FKAE--------DRVENIRRI--------------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       151 ~~~~--------~~~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~  197 (234)
                      +.++        ...+++...                    ..+...+...++..     ...++.+.++....+++++.
T Consensus        81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~  160 (242)
T TIGR03411        81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ  160 (242)
T ss_pred             EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            1111        111111110                    01112222222211     12234556667788899999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|+|+..++....+.+++.+++
T Consensus       161 ~p~~--lllDEPt~~LD~~~~~~l~~~l~~  188 (242)
T TIGR03411       161 DPKL--LLLDEPVAGMTDEETEKTAELLKS  188 (242)
T ss_pred             CCCE--EEecCCccCCCHHHHHHHHHHHHH
Confidence            9988  899999999988888888887764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.7e-20  Score=159.03  Aligned_cols=151  Identities=20%  Similarity=0.233  Sum_probs=106.9

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      ...++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++....    ...+
T Consensus         5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhhe
Confidence            347889999999998889999999999999999999999999999999999988 89999999998764210    0011


Q ss_pred             CCChhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++        ..+++..                ...+...+...++.     ....++.+.++....+++++..+.
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~  163 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA  163 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence            111111        0111100                00111122222221     123345566677788999999998


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|+|+..++....+.+++.+++
T Consensus       164 l--lllDEPt~gLD~~~~~~l~~~L~~  188 (265)
T PRK10253        164 I--MLLDEPTTWLDISHQIDLLELLSE  188 (265)
T ss_pred             E--EEEeCccccCCHHHHHHHHHHHHH
Confidence            8  899999999988888888887753

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.82  E-value=1.4e-19  Score=154.86  Aligned_cols=150  Identities=16%  Similarity=0.157  Sum_probs=106.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------cccc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~~  148 (234)
                      +.++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...      ....
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~i~~v~q~   89 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLAEAREDTRLMFQD   89 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHHHhhCceEEEecC
Confidence            57899999999998889999999999999999999999999999999999988 8999999998764211      0011


Q ss_pred             CCCCh-hhHHHHHHH------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026725          149 LSFKA-EDRVENIRR------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR  216 (234)
Q Consensus       149 ~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R  216 (234)
                      ..+.+ ....+++..      -..+...+..+++..     ...++.+.++....++.++..+.+  +++|||+..|+..
T Consensus        90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l--llLDEPt~~LD~~  167 (257)
T PRK11247         90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL--LLLDEPLGALDAL  167 (257)
T ss_pred             ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Confidence            00100 011111110      011222233333211     123455667777889999999988  8999999999888


Q ss_pred             chhhHHHHHHc
Q 026725          217 DPKGLYKLARE  227 (234)
Q Consensus       217 ~~~~l~~~~~~  227 (234)
                      ....+++.+++
T Consensus       168 ~~~~l~~~L~~  178 (257)
T PRK11247        168 TRIEMQDLIES  178 (257)
T ss_pred             HHHHHHHHHHH
Confidence            88877776653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.81  E-value=1.4e-19  Score=152.77  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=104.8

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---ccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---RDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~~~~~~~  153 (234)
                      ++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++.....   ..+++.+
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~   80 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVF   80 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeC
Confidence            578899999988889999999999999999999999999999999999988 899999999987642110   0111111


Q ss_pred             hh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 ED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +++||
T Consensus        81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDE  158 (236)
T TIGR03864        81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL--LLLDE  158 (236)
T ss_pred             CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            11        11111100            01112222222211     123345566677889999999988  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..++....+.+++.+++
T Consensus       159 P~~~LD~~~~~~l~~~l~~  177 (236)
T TIGR03864       159 PTVGLDPASRAAIVAHVRA  177 (236)
T ss_pred             CccCCCHHHHHHHHHHHHH
Confidence            9999998888888877653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=4.7e-20  Score=151.21  Aligned_cols=138  Identities=16%  Similarity=0.187  Sum_probs=102.1

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccccccCC
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~~~~~~  150 (234)
                      +++++|+++.|++    ..+++++||++++|++++|+||||||||||+++|+|++. .|.+|+|.++|+++.......++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~   82 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG   82 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence            5778999999974    679999999999999999999999999999999999753 37899999999876311111122


Q ss_pred             CChhh--------HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHH
Q 026725          151 FKAED--------RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (234)
Q Consensus       151 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~  222 (234)
                      +..++        ..+++..    .....        .++.+.++....+++++..+.+  +++|||+..++......++
T Consensus        83 ~~~q~~~~~~~~tv~~~l~~----~~~~~--------~LSgGe~qrv~la~al~~~p~v--lllDEP~~~LD~~~~~~l~  148 (192)
T cd03232          83 YVEQQDVHSPNLTVREALRF----SALLR--------GLSVEQRKRLTIGVELAAKPSI--LFLDEPTSGLDSQAAYNIV  148 (192)
T ss_pred             EecccCccccCCcHHHHHHH----HHHHh--------cCCHHHhHHHHHHHHHhcCCcE--EEEeCCCcCCCHHHHHHHH
Confidence            22221        1111111    00000        4556667777889999999988  8999999999988888888


Q ss_pred             HHHHc
Q 026725          223 KLARE  227 (234)
Q Consensus       223 ~~~~~  227 (234)
                      +.+++
T Consensus       149 ~~l~~  153 (192)
T cd03232         149 RFLKK  153 (192)
T ss_pred             HHHHH
Confidence            87764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=2.2e-19  Score=148.77  Aligned_cols=149  Identities=17%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-ccccCCCCh-
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKA-  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~~~~~~~~~-  153 (234)
                      +++++|+++.|++..+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++... ....+++.+ 
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGH   80 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecC
Confidence            4788999999988889999999999999999999999999999999999988 8999999999875311 000011110 


Q ss_pred             -------hhHHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          154 -------EDRVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       154 -------~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                             ....+++...        ..+...+...++..     ...++.+.++....+++++..+.+  +++|||+..+
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~L  158 (207)
T PRK13539         81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI--WILDEPTAAL  158 (207)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCcccC
Confidence                   0111111110        01222222233211     123445566777889999999988  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +......+++.+++
T Consensus       159 D~~~~~~l~~~l~~  172 (207)
T PRK13539        159 DAAAVALFAELIRA  172 (207)
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888777764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.6e-20  Score=162.58  Aligned_cols=150  Identities=16%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      ++++++|+++.|++  ..+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++....    ...
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQ   82 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhh
Confidence            36889999999974  569999999999999999999999999999999999998 99999999999875311    111


Q ss_pred             CCCChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026725          149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +++.+++.         .+++...            ..+...+...++..     ...++.+.++....+++++..+.+ 
T Consensus        83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-  161 (279)
T PRK13635         83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI-  161 (279)
T ss_pred             eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            22222211         1111110            01122222222211     123355666777889999999999 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|+|+..|+......+++.+++
T Consensus       162 -llLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        162 -IILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHHH
Confidence             899999999999888888887764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=9.3e-20  Score=158.39  Aligned_cols=148  Identities=17%  Similarity=0.154  Sum_probs=106.0

Q ss_pred             ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      ++++|+++.|+.     +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++....      
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-PTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEECCEECCCcCccHHHH
Confidence            678999999964     469999999999999999999999999999999999998 99999999998875311      


Q ss_pred             cccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce-------EEEecCcccHHHHHHHHHhCC
Q 026725          146 NRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI-------CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       146 ~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~  197 (234)
                      ...+++.+++         ..+.+...            ..+...+...++.       ....++.+.++....+++++.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            1112222221         11111110            0112223333331       113345566777788999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|+|+..|+......+++.+++
T Consensus       162 ~P~l--lllDEPt~gLD~~~~~~l~~~l~~  189 (287)
T PRK13637        162 EPKI--LILDEPTAGLDPKGRDEILNKIKE  189 (287)
T ss_pred             CCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence            9998  899999999988888888877753

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.81  E-value=1.5e-20  Score=167.87  Aligned_cols=141  Identities=18%  Similarity=0.208  Sum_probs=99.0

Q ss_pred             eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccCCCChh-
Q 026725           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDLSFKAE-  154 (234)
Q Consensus        84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~~~~~~-  154 (234)
                      ++|+++.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++....        ...+++..+ 
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            35778889999999999999999999999999999999999998 99999999999876311        111111111 


Q ss_pred             -------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          155 -------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       155 -------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                             ...+++...            ..+...+...++..     ...++.+.+++...+++++..+.+  +++|||+
T Consensus        80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i--LLlDEP~  157 (363)
T TIGR01186        80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI--LLMDEAF  157 (363)
T ss_pred             CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCc
Confidence                   111211110            01122222222211     122345566777889999999988  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      ..++...+..+++.+++
T Consensus       158 saLD~~~r~~l~~~l~~  174 (363)
T TIGR01186       158 SALDPLIRDSMQDELKK  174 (363)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99988888888877653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.7e-19  Score=152.28  Aligned_cols=150  Identities=12%  Similarity=0.152  Sum_probs=104.8

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....     ...+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCE
Confidence            36889999999988889999999999999999999999999999999999988 89999999998764210     0011


Q ss_pred             CCChh--------hHHHHHHH----------HHHHHHHHHhc------CceEEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026725          150 SFKAE--------DRVENIRR----------IGEVAKLFADA------GVICIACLISPYRKDRDACRSMLPEGDFIEVF  205 (234)
Q Consensus       150 ~~~~~--------~~~~~~~~----------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~  205 (234)
                      ++.++        ...+++..          ...+.......      .......++.+.++....++.++..+.+  ++
T Consensus        83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i--ll  160 (237)
T PRK11614         83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL--LL  160 (237)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--EE
Confidence            11110        00111100          00001111111      0111223455566777888999999988  89


Q ss_pred             EeCChhhhhhcchhhHHHHHHc
Q 026725          206 MDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       206 ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +|+|+..++....+.+++.+++
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~  182 (237)
T PRK11614        161 LDEPSLGLAPIIIQQIFDTIEQ  182 (237)
T ss_pred             EcCccccCCHHHHHHHHHHHHH
Confidence            9999999998888888887753

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.81  E-value=9.9e-20  Score=154.81  Aligned_cols=149  Identities=18%  Similarity=0.178  Sum_probs=105.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-----------
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----------  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-----------  144 (234)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++...           
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHH
Confidence            5789999999988889999999999999999999999999999999999988 8999999999876421           


Q ss_pred             -ccccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCC
Q 026725          145 -LNRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       145 -~~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~  197 (234)
                       ....+++.++        ...+++...             ..+...+...++..     ...++.+.++....+++++.
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~  161 (250)
T PRK11264         82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM  161 (250)
T ss_pred             HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence             0001111111        111111100             01112222223211     12234556677788999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..|+......+++.+++
T Consensus       162 ~p~l--llLDEPt~~LD~~~~~~l~~~l~~  189 (250)
T PRK11264        162 RPEV--ILFDEPTSALDPELVGEVLNTIRQ  189 (250)
T ss_pred             CCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9988  899999999988888888876653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.81  E-value=5.2e-20  Score=149.17  Aligned_cols=113  Identities=18%  Similarity=0.119  Sum_probs=94.1

Q ss_pred             eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHH
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~  159 (234)
                      .|+++.|++..++++. |++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++.        +.+++.   
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~--------~~~q~~---   70 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPV--------YKPQYI---   70 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEE--------EEcccC---
Confidence            4789999999999884 9999999999999999999999999999998 99999999997653        222211   


Q ss_pred             HHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                                    .      ++.+.++....++.++..+.+  +++|||+..++....+.+++.+++
T Consensus        71 --------------~------LSgGq~qrv~laral~~~p~l--llLDEPts~LD~~~~~~l~~~l~~  116 (177)
T cd03222          71 --------------D------LSGGELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARAIRR  116 (177)
T ss_pred             --------------C------CCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence                          0      555667777889999999988  899999999988887777766653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=2.5e-20  Score=164.66  Aligned_cols=150  Identities=17%  Similarity=0.173  Sum_probs=105.0

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc---CCccEEEEcCcccccccc--
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHGLN--  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~---p~~G~i~~~g~~v~~~~~--  146 (234)
                      +++++|+++.|+.    ..+++|+||+|++||+++|+|+||||||||+++|+|+++.   +++|+|.++|+++.....  
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            5789999999976    5799999999999999999999999999999999999862   378999999998753110  


Q ss_pred             ------ccCCCChhhH--------------HHHHHH---------HHHHHHHHHhcCceE--------EEecCcccHHHH
Q 026725          147 ------RDLSFKAEDR--------------VENIRR---------IGEVAKLFADAGVIC--------IACLISPYRKDR  189 (234)
Q Consensus       147 ------~~~~~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  189 (234)
                            ..+++.+++.              .+.+..         ...+...+...++..        ...++.+.+++.
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence                  0122222111              111110         011222233333311        123455667777


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++++++..+.+  +++|||+..|+......+++.+++
T Consensus       163 ~iArAL~~~P~l--lilDEPts~LD~~~~~~il~lL~~  198 (326)
T PRK11022        163 MIAMAIACRPKL--LIADEPTTALDVTIQAQIIELLLE  198 (326)
T ss_pred             HHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            889999999998  899999999988887777776653

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=2.2e-20  Score=161.27  Aligned_cols=149  Identities=13%  Similarity=0.143  Sum_probs=106.2

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      +++++|+++.|+ +..+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++....    ...++
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEE
Confidence            678999999996 5679999999999999999999999999999999999998 89999999998874311    01122


Q ss_pred             CChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          151 FKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       151 ~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +.+++.         .+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +
T Consensus        83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--l  160 (274)
T PRK13647         83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV--I  160 (274)
T ss_pred             EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            222211         1111100            01112222222211     123345566777889999999998  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..|+......+++.+++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~  183 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEILDR  183 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHH
Confidence            99999999988888888777753

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.81  E-value=4e-20  Score=173.02  Aligned_cols=148  Identities=24%  Similarity=0.219  Sum_probs=106.0

Q ss_pred             cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----cCC
Q 026725           76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----DLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----~~~  150 (234)
                      .++++|++++|++ .++++|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.+||.++... ..    .++
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~-~~~lr~~i~  411 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSL-QDELRRRIS  411 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhH-HHHHHhheE
Confidence            4889999999975 569999999999999999999999999999999999998 9999999999887632 11    011


Q ss_pred             CChhh-------HHHHHH------------HHHHH---HHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAED-------RVENIR------------RIGEV---AKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~-------~~~~~~------------~~~~~---~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.+++       .++++.            ...+.   .......  +. ..+    ..++.+.+++-..+|++++.+.+
T Consensus       412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i  491 (529)
T TIGR02868       412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI  491 (529)
T ss_pred             EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence            11111       011111            00011   0111110  11 011    22455667788999999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.++....+.+++.+++
T Consensus       492 --liLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       492 --LLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             --EEEeCCcccCCHHHHHHHHHHHHH
Confidence              899999999999999988888875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=5.4e-20  Score=155.70  Aligned_cols=148  Identities=14%  Similarity=0.220  Sum_probs=103.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~  150 (234)
                      +++++|+++.|+++.+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|+++|.++....     ...++
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            5788999999998889999999999999999999999999999999999988 89999999998764210     01111


Q ss_pred             CChhh--------HHHHHHHH-------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          151 FKAED--------RVENIRRI-------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       151 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +.+++        ..+++...             ..+...+..+++.     ....++.+.++....+++++..+.+  +
T Consensus        82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l  159 (241)
T PRK10895         82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF--I  159 (241)
T ss_pred             EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111        11111100             0111122222221     1123345566667888999999988  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++|||+..++......+++.++
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~  181 (241)
T PRK10895        160 LLDEPFAGVDPISVIDIKRIIE  181 (241)
T ss_pred             EEcCCcccCCHHHHHHHHHHHH
Confidence            9999999998888877776665

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.81  E-value=3e-19  Score=151.28  Aligned_cols=148  Identities=18%  Similarity=0.224  Sum_probs=104.4

Q ss_pred             ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      ++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....    ...+++
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEE
Confidence            357899999987 789999999999999999999999999999999999988 89999999998764210    011111


Q ss_pred             Chh--------hHHHHHHHH------------HHHHHHHHhcCceE-------EEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC-------IACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      .++        ...+++...            ..+...+...++..       ...++.+.++....+++++..+.+  +
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l  157 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL--L  157 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            111        111111110            01122223333321       122345566777889999999998  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..++......+++.+++
T Consensus       158 llDEPt~~LD~~~~~~l~~~L~~  180 (242)
T cd03295         158 LMDEPFGALDPITRDQLQEEFKR  180 (242)
T ss_pred             EecCCcccCCHHHHHHHHHHHHH
Confidence            99999999988888888777664

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=2.8e-19  Score=152.47  Aligned_cols=149  Identities=15%  Similarity=0.198  Sum_probs=105.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      .+++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++....     ...+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCe
Confidence            36889999999998899999999999999999999999999999999999988 89999999998764211     0011


Q ss_pred             CCChh--------hHHHHHHHH---------------------------HHHHHHHHhcCce-----EEEecCcccHHHH
Q 026725          150 SFKAE--------DRVENIRRI---------------------------GEVAKLFADAGVI-----CIACLISPYRKDR  189 (234)
Q Consensus       150 ~~~~~--------~~~~~~~~~---------------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~  189 (234)
                      ++.++        ...+++...                           ..+...+...++.     ....++.+.++..
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv  162 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL  162 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence            11111        111111100                           0111112222221     1122345566777


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+++++..+.+  +++|||+..|+......+++.+.
T Consensus       163 ~la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~L~  197 (255)
T PRK11300        163 EIARCMVTQPEI--LMLDEPAAGLNPKETKELDELIA  197 (255)
T ss_pred             HHHHHHhcCCCE--EEEcCCccCCCHHHHHHHHHHHH
Confidence            889999999998  89999999998888888887775

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.81  E-value=3.6e-20  Score=163.93  Aligned_cols=150  Identities=17%  Similarity=0.164  Sum_probs=105.1

Q ss_pred             cccceeeceeeecCC-------------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           74 STVAKSTNILWHKNS-------------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~-------------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .++++++|+++.|+.             ..+++|+||+|++||+++|+|+||||||||+++|+|++. |++|+|+++|++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~   84 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKD   84 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEE
Confidence            358999999999952             568999999999999999999999999999999999998 899999999998


Q ss_pred             ccccc-------cccCCCChhh----------HHHHHHH--------------HHHHHHHHHhcCceE------EEecCc
Q 026725          141 CRHGL-------NRDLSFKAED----------RVENIRR--------------IGEVAKLFADAGVIC------IACLIS  183 (234)
Q Consensus       141 v~~~~-------~~~~~~~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~~------~~~~~~  183 (234)
                      +....       ...+++..++          ..+++..              ...+...+...++..      ...++.
T Consensus        85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence            75311       0111111111          0111100              001112222222211      122355


Q ss_pred             ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +.+++..++++++..+.+  +++|||+..|+......+++.++
T Consensus       165 G~~QRv~iArAL~~~P~l--lilDEPts~LD~~~~~~i~~lL~  205 (331)
T PRK15079        165 GQCQRIGIARALILEPKL--IICDEPVSALDVSIQAQVVNLLQ  205 (331)
T ss_pred             HHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            667777889999999998  89999999998887777776664

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.81  E-value=5.2e-20  Score=156.83  Aligned_cols=148  Identities=14%  Similarity=0.133  Sum_probs=103.3

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----------
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----------  145 (234)
                      ++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|++. |++|+|.++|+++....           
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccch
Confidence            357899999988889999999999999999999999999999999999988 89999999998763210           


Q ss_pred             ------cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHH
Q 026725          146 ------NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACR  193 (234)
Q Consensus       146 ------~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  193 (234)
                            ...+++..+        ...+++...             ..+...+...++..     ...++.+.++....++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence                  011111111        111111110             01112222222211     1223455666778889


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++..+.+  +++|||+..|+......+++.+++
T Consensus       160 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  191 (252)
T TIGR03005       160 ALAMRPKV--MLFDEVTSALDPELVGEVLNVIRR  191 (252)
T ss_pred             HHHcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999988  899999999988888888777754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.81  E-value=3e-20  Score=155.69  Aligned_cols=149  Identities=21%  Similarity=0.219  Sum_probs=104.4

Q ss_pred             cceeeceeeecCCc----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           76 VAKSTNILWHKNSV----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      +++++|+++.|++.    .+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....      
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~   79 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKI   79 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHH
Confidence            35788999999765    79999999999999999999999999999999999988 89999999998764311      


Q ss_pred             -cccCCCChhhH----------HHHHHH------------H-HHH-HHHHHhcCce------EEEecCcccHHHHHHHHH
Q 026725          146 -NRDLSFKAEDR----------VENIRR------------I-GEV-AKLFADAGVI------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       146 -~~~~~~~~~~~----------~~~~~~------------~-~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  194 (234)
                       ...+++.+++.          .+++..            . ... ...+..+++.      ....++.+.++....++.
T Consensus        80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  159 (228)
T cd03257          80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA  159 (228)
T ss_pred             hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence             01111111110          111100            0 000 1122222221      112244556677788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..|+....+.+++.+++
T Consensus       160 l~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  190 (228)
T cd03257         160 LALNPKL--LIADEPTSALDVSVQAQILDLLKK  190 (228)
T ss_pred             HhcCCCE--EEecCCCCCCCHHHHHHHHHHHHH
Confidence            9999998  899999999988888888887753

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.5e-19  Score=153.10  Aligned_cols=149  Identities=15%  Similarity=0.183  Sum_probs=105.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      .++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++....    ...+++
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            4678999999988889999999999999999999999999999999999988 89999999998764210    011112


Q ss_pred             Chhh-------HHHHHHH--------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          152 KAED-------RVENIRR--------IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       152 ~~~~-------~~~~~~~--------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                      .+++       ..+++..        ...+...+...++.      ....++.+.++....+++++..+.+  +++|||+
T Consensus        82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt  159 (241)
T PRK14250         82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV--LLLDEPT  159 (241)
T ss_pred             EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCc
Confidence            1111       1111110        00111222222221      1123345566777888999999988  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      ..|+....+.+++.+++
T Consensus       160 ~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250        160 SALDPTSTEIIEELIVK  176 (241)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99998888888877764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.81  E-value=1.6e-19  Score=151.05  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=103.6

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh--
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~--  154 (234)
                      ++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++.......+++.++  
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCC
Confidence            357899999988889999999999999999999999999999999999988 99999999998753211011111111  


Q ss_pred             ------hHHHHHHHH--------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026725          155 ------DRVENIRRI--------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA  215 (234)
Q Consensus       155 ------~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~  215 (234)
                            ...+++...        ..+...+...++..     ...++.+.++....+++++..+.+  +++|+|+..++.
T Consensus        80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l--lllDEP~~~LD~  157 (223)
T TIGR03740        80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL--LILDEPTNGLDP  157 (223)
T ss_pred             CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCccCCCH
Confidence                  111222110        01122222222211     122344556666788999999988  899999999988


Q ss_pred             cchhhHHHHHHc
Q 026725          216 RDPKGLYKLARE  227 (234)
Q Consensus       216 R~~~~l~~~~~~  227 (234)
                      ...+.+++.+++
T Consensus       158 ~~~~~l~~~L~~  169 (223)
T TIGR03740       158 IGIQELRELIRS  169 (223)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877753

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=6.5e-20  Score=151.54  Aligned_cols=144  Identities=15%  Similarity=0.117  Sum_probs=103.5

Q ss_pred             cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccccc---cc
Q 026725           76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHG---LN  146 (234)
Q Consensus        76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~---~~  146 (234)
                      ...++|+++.|+    +..+++++||++++|++++|+|+||||||||+++|+|++++  |.+|+|.++|.++...   ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            457899999995    55799999999999999999999999999999999998863  5799999999887531   11


Q ss_pred             ccCCCChhh--------HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          147 RDLSFKAED--------RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       147 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ..+++.+++        ..+++...    ....  .......++.+.++....+++++..+.+  +++|||+..++....
T Consensus        83 ~~i~~~~q~~~~~~~~tv~~~l~~~----~~~~--~~~~~~~LS~Ge~qrl~laral~~~p~l--lllDEPt~~LD~~~~  154 (202)
T cd03233          83 GEIIYVSEEDVHFPTLTVRETLDFA----LRCK--GNEFVRGISGGERKRVSIAEALVSRASV--LCWDNSTRGLDSSTA  154 (202)
T ss_pred             ceEEEEecccccCCCCcHHHHHhhh----hhhc--cccchhhCCHHHHHHHHHHHHHhhCCCE--EEEcCCCccCCHHHH
Confidence            112222221        11111110    0000  1111223455566777889999999998  899999999988888


Q ss_pred             hhHHHHHHc
Q 026725          219 KGLYKLARE  227 (234)
Q Consensus       219 ~~l~~~~~~  227 (234)
                      +.+++.+++
T Consensus       155 ~~~~~~l~~  163 (202)
T cd03233         155 LEILKCIRT  163 (202)
T ss_pred             HHHHHHHHH
Confidence            888887764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.1e-20  Score=159.80  Aligned_cols=151  Identities=13%  Similarity=0.123  Sum_probs=107.0

Q ss_pred             cccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cc
Q 026725           74 STVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NR  147 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~  147 (234)
                      .++++++|+++.|++  ..+++|+||++++||+++|+||||||||||+++|+|+++ |.+|+|+++|.++....    ..
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~   83 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRK   83 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHh
Confidence            457899999999975  358999999999999999999999999999999999988 89999999998864211    01


Q ss_pred             cCCCChhhH---------HHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCc
Q 026725          148 DLSFKAEDR---------VENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       148 ~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      .+++.+++.         .++...            ...+...+...++..     ...++.+.++....+++++..+.+
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV  163 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            122222211         011100            001112222222211     123345566777889999999998


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..++......+++.+++
T Consensus       164 --llLDEPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        164 --IILDEATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             --EEEeCCcccCCHHHHHHHHHHHHH
Confidence              899999999998888888887764

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.9e-20  Score=163.49  Aligned_cols=149  Identities=17%  Similarity=0.193  Sum_probs=105.3

Q ss_pred             ccceeeceeeecC----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc
Q 026725           75 TVAKSTNILWHKN----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~  144 (234)
                      ++++++|+++.|+          .+.+++||||+|.+||+++|+|+||||||||+++|+|++. |.+|+|.++|+++...
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKA   82 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcC
Confidence            4789999999995          2579999999999999999999999999999999999998 8999999999887532


Q ss_pred             c-------cccCCCChhhH----------HHHHH-------------HHHHHHHHHHhcCceE------EEecCcccHHH
Q 026725          145 L-------NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVIC------IACLISPYRKD  188 (234)
Q Consensus       145 ~-------~~~~~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~  188 (234)
                      .       ...+++..++.          ...+.             ....+...+...++..      ...++.+.+++
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR  162 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR  162 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence            1       01122221110          00000             0011222233333211      12335566777


Q ss_pred             HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..++++++..+.+  +++|||+..|+......+++.++
T Consensus       163 v~iArAL~~~P~l--LilDEPts~LD~~~~~~i~~lL~  198 (327)
T PRK11308        163 IAIARALMLDPDV--VVADEPVSALDVSVQAQVLNLMM  198 (327)
T ss_pred             HHHHHHHHcCCCE--EEEECCCccCCHHHHHHHHHHHH
Confidence            7899999999998  89999999998877777776664

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.3e-19  Score=153.11  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=105.6

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      ++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|+++....    ...++
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheE
Confidence            36899999999988899999999999999999999999999999999999988 89999999998763210    00011


Q ss_pred             CChh--------hHHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAE--------DRVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~--------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.++        ...+++..                ...+...+...++.     ....++.+.++....+++++..+.+
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  168 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC  168 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            1111        11111110                00111122222221     1123455667777889999999998


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|+|+..|+......+++.+++
T Consensus       169 --llLDEPt~~LD~~~~~~~~~~l~~  192 (265)
T PRK10575        169 --LLLDEPTSALDIAHQVDVLALVHR  192 (265)
T ss_pred             --EEEcCCcccCCHHHHHHHHHHHHH
Confidence              899999999988888777777653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=6.6e-20  Score=158.69  Aligned_cols=148  Identities=15%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      +++++|+++.|++   ..+++|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|+++|.++....    ...
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhh
Confidence            5789999999963   459999999999999999999999999999999999998 99999999998874311    011


Q ss_pred             CCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +++..++.         .+++...            ..+...+...++.     ....++.+.++....++.++..+.+ 
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l-  161 (279)
T PRK13650         83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI-  161 (279)
T ss_pred             ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            22222211         1111100            0111122222221     1133455566777889999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|||+..|+......+++.++
T Consensus       162 -LlLDEPt~~LD~~~~~~l~~~l~  184 (279)
T PRK13650        162 -IILDEATSMLDPEGRLELIKTIK  184 (279)
T ss_pred             -EEEECCcccCCHHHHHHHHHHHH
Confidence             89999999998888888777665

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.81  E-value=2.3e-20  Score=160.66  Aligned_cols=147  Identities=18%  Similarity=0.200  Sum_probs=104.6

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccC
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDL  149 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~  149 (234)
                      .++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....        ...+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            45689999999999999999999999999999999999999999999998 89999999998764210        0111


Q ss_pred             CCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          150 SFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++.+++        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +
T Consensus       105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i--l  182 (269)
T cd03294         105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI--L  182 (269)
T ss_pred             EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE--E
Confidence            111111        11111110            01122222233211     123455667777899999999998  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..|+......+++.+++
T Consensus       183 lLDEPt~~LD~~~~~~l~~~l~~  205 (269)
T cd03294         183 LMDEAFSALDPLIRREMQDELLR  205 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999998888888887653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.4e-19  Score=153.18  Aligned_cols=149  Identities=17%  Similarity=0.172  Sum_probs=104.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-----c-----c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----G-----L  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-----~-----~  145 (234)
                      +++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..     .     .
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHH
Confidence            3678999999988899999999999999999999999999999999999988 899999999987520     0     0


Q ss_pred             cccCCCChhh--------HHHHHHH-------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026725          146 NRDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 ~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      ...+++.+++        ..+++..             ...+...+...++..     ...++.+.++....+++++..+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (242)
T PRK11124         81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            0011111111        1111110             001111222222211     1223455666778899999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||++.++......+++.+++
T Consensus       161 ~l--lilDEPt~~LD~~~~~~l~~~l~~  186 (242)
T PRK11124        161 QV--LLFDEPTAALDPEITAQIVSIIRE  186 (242)
T ss_pred             CE--EEEcCCCCcCCHHHHHHHHHHHHH
Confidence            88  899999999998888888777763

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.80  E-value=5.9e-20  Score=175.68  Aligned_cols=144  Identities=17%  Similarity=0.118  Sum_probs=106.9

Q ss_pred             cccceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026725           74 STVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      ..-++++|++++|+..  .+++|+|++|++||.++|+|+||||||||+|+|.|++. |.+|+|++||.|+..       +
T Consensus       469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p~~G~I~~dg~dl~~-------i  540 (709)
T COG2274         469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLND-------I  540 (709)
T ss_pred             CceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEeHHh-------c
Confidence            3468899999999765  69999999999999999999999999999999999998 999999999999864       2


Q ss_pred             ChhhHHHHHHHHH------------------------------HHHH----HHHhcCce--EE----EecCcccHHHHHH
Q 026725          152 KAEDRVENIRRIG------------------------------EVAK----LFADAGVI--CI----ACLISPYRKDRDA  191 (234)
Q Consensus       152 ~~~~~~~~~~~~~------------------------------~~~~----~~~~~~~~--~~----~~~~~~~~~~~~~  191 (234)
                      +....++.+.++.                              +.+.    +.+.+.-+  .+    ..++.+.+++...
T Consensus       541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal  620 (709)
T COG2274         541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL  620 (709)
T ss_pred             CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence            2222221111111                              1110    11111100  11    1235567888899


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||+++..+.+  +++|||++.++....+..++.+.+
T Consensus       621 ARaLl~~P~I--LlLDEaTSaLD~~sE~~I~~~L~~  654 (709)
T COG2274         621 ARALLSKPKI--LLLDEATSALDPETEAIILQNLLQ  654 (709)
T ss_pred             HHHhccCCCE--EEEeCcccccCHhHHHHHHHHHHH
Confidence            9999999999  899999999999888887776654

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=9.3e-20  Score=157.58  Aligned_cols=149  Identities=14%  Similarity=0.173  Sum_probs=104.5

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      +++++|+++.|+ ...+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++....    ...++
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheE
Confidence            578899999995 5569999999999999999999999999999999999988 99999999998764210    01111


Q ss_pred             CChhh---------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          151 FKAED---------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       151 ~~~~~---------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +.+++         ..+++....            .+...+...++.     ....++.+.++....+++++..+.+  +
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l--l  159 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV--L  159 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence            11111         111111100            011112222221     1123455566777889999999998  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|+|+..++......+++.+++
T Consensus       160 ilDEPt~gLD~~~~~~l~~~l~~  182 (277)
T PRK13652        160 VLDEPTAGLDPQGVKELIDFLND  182 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999988888888777753

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.80  E-value=7.5e-20  Score=152.86  Aligned_cols=148  Identities=15%  Similarity=0.175  Sum_probs=102.8

Q ss_pred             ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------
Q 026725           77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------  145 (234)
                      ++++|+++.|++    ..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|+++....       
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEhHhcCHhHHHHH
Confidence            578899999974    679999999999999999999999999999999999988 89999999998874211       


Q ss_pred             cccCCCChhhH--------HHHHHHH-------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCC
Q 026725          146 NRDLSFKAEDR--------VENIRRI-------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       146 ~~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      ...+++.+++.        .+++...             ..+...+...++..     ...++.+.++....++.++..+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            01111111111        1111100             01112222222211     1223445566677889999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||+..++....+.+++.+++
T Consensus       161 ~i--lllDEP~~~LD~~~~~~l~~~l~~  186 (220)
T TIGR02982       161 KL--VLADEPTAALDSKSGRDVVELMQK  186 (220)
T ss_pred             CE--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence            88  899999999988888888877754

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.80  E-value=2.5e-20  Score=159.51  Aligned_cols=148  Identities=21%  Similarity=0.182  Sum_probs=102.0

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|.++....    ...+++
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEE
Confidence            4678999999998889999999999999999999999999999999999988 89999999998753210    000111


Q ss_pred             Chh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhC------CCCC
Q 026725          152 KAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSML------PEGD  200 (234)
Q Consensus       152 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll------~~~~  200 (234)
                      .++        ...+++...            ..+...+...++.     ....++.+.++....+++++      ..+.
T Consensus        81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            111        111111100            0111122222221     12234556667778888888      3677


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +  +++|||+..|+......+.+.++
T Consensus       161 l--llLDEPt~~LD~~~~~~l~~~l~  184 (258)
T PRK13548        161 W--LLLDEPTSALDLAHQHHVLRLAR  184 (258)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHH
Confidence            7  89999999998888777777665

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.80  E-value=2.8e-19  Score=152.53  Aligned_cols=148  Identities=15%  Similarity=0.109  Sum_probs=102.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh--
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA--  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~--  153 (234)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.+++...-.....+..+..  
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~~~i~~v~q~~~~~~~l   82 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGKLRIGYVPQKLYLDTTL   82 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCccCEEEecccccccccc
Confidence            6889999999998889999999999999999999999999999999999988 8999999987421110111100100  


Q ss_pred             -hhHHHHHHH-----HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHH
Q 026725          154 -EDRVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (234)
Q Consensus       154 -~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~  222 (234)
                       ....+....     ...+...+...++.     ....++.+.++....++.++..+.+  +++|||+..++......++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llLDEPt~~LD~~~~~~l~  160 (251)
T PRK09544         83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL--LVLDEPTQGVDVNGQVALY  160 (251)
T ss_pred             ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHH
Confidence             011111100     00111222222221     1233455666777889999999988  8999999999888888887


Q ss_pred             HHHH
Q 026725          223 KLAR  226 (234)
Q Consensus       223 ~~~~  226 (234)
                      +.++
T Consensus       161 ~~L~  164 (251)
T PRK09544        161 DLID  164 (251)
T ss_pred             HHHH
Confidence            7765

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=5.9e-19  Score=150.10  Aligned_cols=150  Identities=18%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc----cc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL----NR  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~----~~  147 (234)
                      .++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++++    |.+|+|.++|.++....    ..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   82 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR   82 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence            57889999999888899999999999999999999999999999999999862    36899999998764211    01


Q ss_pred             cCCCChh--------hHHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHhC
Q 026725          148 DLSFKAE--------DRVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSML  196 (234)
Q Consensus       148 ~~~~~~~--------~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll  196 (234)
                      .+++.++        ...+++...              ..+...+...++.         ....++.+.++....+++++
T Consensus        83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  162 (250)
T PRK14247         83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA  162 (250)
T ss_pred             cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            1111111        111111100              0111222222321         11234556667778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++....+.+++.+++
T Consensus       163 ~~p~l--llLDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14247        163 FQPEV--LLADEPTANLDPENTAKIESLFLE  191 (250)
T ss_pred             cCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            99988  899999999999888888887764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.80  E-value=7.4e-20  Score=155.94  Aligned_cols=150  Identities=18%  Similarity=0.129  Sum_probs=104.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-----ccccc----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHGL----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-----v~~~~----  145 (234)
                      ++++++|+++.|++..+++|+||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|++     +....    
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHH
Confidence            36889999999988889999999999999999999999999999999999988 899999999876     42110    


Q ss_pred             ----cccCCCChhhH----------HHHHH-------------HHHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026725          146 ----NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI------CIACLISPYRKDRDAC  192 (234)
Q Consensus       146 ----~~~~~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  192 (234)
                          ...+++..++.          .+.+.             ....+...+...++.      ....++.+.++....+
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence                00111111110          00100             000111222222221      1122345566777889


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++++..+.+  +++|||+..|+....+.+++.+++
T Consensus       161 ral~~~p~v--lllDEP~~~LD~~~~~~l~~~l~~  193 (253)
T TIGR02323       161 RNLVTRPRL--VFMDEPTGGLDVSVQARLLDLLRG  193 (253)
T ss_pred             HHHhcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999998  899999999988888888776654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.5e-20  Score=159.13  Aligned_cols=149  Identities=17%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      +++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++....    ...+++
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            4678999999998899999999999999999999999999999999999988 89999999998753210    000111


Q ss_pred             Chhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          152 KAED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       152 ~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++        ..+++..                ...+...+...++.     ....++.+.++....+++++..+.+ 
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-  159 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV-  159 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            1110        1111100                00111122222221     1123455666777889999999988 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..++....+.+++.+++
T Consensus       160 -lllDEP~~~LD~~~~~~l~~~l~~  183 (255)
T PRK11231        160 -VLLDEPTTYLDINHQVELMRLMRE  183 (255)
T ss_pred             -EEEcCCcccCCHHHHHHHHHHHHH
Confidence             899999999988888888887754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=6.3e-19  Score=153.03  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             ccccccc-CcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcc
Q 026725           66 SGNNLCQ-NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDN  140 (234)
Q Consensus        66 ~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~  140 (234)
                      ++..+.. ..++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++.    |.+|+|.++|.+
T Consensus        28 ~~~~~~~~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~  107 (285)
T PRK14254         28 SGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN  107 (285)
T ss_pred             CCCccccCCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEE
Confidence            3443333 34578999999999888899999999999999999999999999999999999862    578999999987


Q ss_pred             cccc------ccccCCCChh-------hHHHHHHHH-----------HHHHHHHHhcCce---------EEEecCcccHH
Q 026725          141 CRHG------LNRDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGVI---------CIACLISPYRK  187 (234)
Q Consensus       141 v~~~------~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~~~---------~~~~~~~~~~~  187 (234)
                      +...      ....+++.++       ...+++...           ..+...+...++.         ....++.+.++
T Consensus       108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence            6321      0011111111       111221110           0111222222221         12334556677


Q ss_pred             HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ....++.++..+.+  +++|||+..|+......+++.+++
T Consensus       188 rv~LAraL~~~p~l--LLLDEPts~LD~~~~~~l~~~L~~  225 (285)
T PRK14254        188 RLCIARAIAPDPEV--ILMDEPASALDPVATSKIEDLIEE  225 (285)
T ss_pred             HHHHHHHHHcCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            77899999999998  899999999988888888887764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.80  E-value=6.5e-20  Score=160.43  Aligned_cols=140  Identities=19%  Similarity=0.245  Sum_probs=98.8

Q ss_pred             ecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCChhh------
Q 026725           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKAED------  155 (234)
Q Consensus        85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~~~------  155 (234)
                      .|+++.+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....   ...+++.+++      
T Consensus         2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~   80 (302)
T TIGR01188         2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED   80 (302)
T ss_pred             eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence            5677889999999999999999999999999999999999998 99999999998764311   0111221111      


Q ss_pred             --HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026725          156 --RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR  216 (234)
Q Consensus       156 --~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R  216 (234)
                        ..+++....            .+...+..+++.     ....++.+.++....+++++..+.+  +++|||+..|+..
T Consensus        81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~  158 (302)
T TIGR01188        81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV--LFLDEPTTGLDPR  158 (302)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHH
Confidence              112211100            112223333321     1233455667777889999999998  8999999999888


Q ss_pred             chhhHHHHHHc
Q 026725          217 DPKGLYKLARE  227 (234)
Q Consensus       217 ~~~~l~~~~~~  227 (234)
                      ....+++.+++
T Consensus       159 ~~~~l~~~l~~  169 (302)
T TIGR01188       159 TRRAIWDYIRA  169 (302)
T ss_pred             HHHHHHHHHHH
Confidence            88888777654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.80  E-value=4.2e-20  Score=163.47  Aligned_cols=149  Identities=16%  Similarity=0.136  Sum_probs=103.6

Q ss_pred             ccceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccc--
Q 026725           75 TVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL--  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~--  145 (234)
                      ++++++|+++.|+    ...+++|+||+|++||+++|+|+||||||||+++|+|+++ |.   +|+|+++|+++....  
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~~~~   89 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEK   89 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcCCHH
Confidence            4789999999994    3579999999999999999999999999999999999997 65   899999999874311  


Q ss_pred             ------cccCCCChhhH----------HHHH----HH---------HHHHHHHHHhcCceE--------EEecCcccHHH
Q 026725          146 ------NRDLSFKAEDR----------VENI----RR---------IGEVAKLFADAGVIC--------IACLISPYRKD  188 (234)
Q Consensus       146 ------~~~~~~~~~~~----------~~~~----~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~~  188 (234)
                            ...+++..++.          .+.+    ..         ...+...+...++..        ...++.+.+++
T Consensus        90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR  169 (330)
T PRK09473         90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR  169 (330)
T ss_pred             HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence                  01122222211          0100    00         001112222222210        12234556677


Q ss_pred             HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..++++++..+.+  +++|||+..|+......+++.++
T Consensus       170 v~IArAL~~~P~l--lilDEPts~LD~~~~~~i~~lL~  205 (330)
T PRK09473        170 VMIAMALLCRPKL--LIADEPTTALDVTVQAQIMTLLN  205 (330)
T ss_pred             HHHHHHHHcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            7889999999998  89999999998888877776554

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.80  E-value=1.9e-19  Score=152.33  Aligned_cols=148  Identities=17%  Similarity=0.105  Sum_probs=104.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccc-----cccC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|++  + |++|+|.++|+++....     ...+
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-VTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCcceEEECCEecCCCCHHHhhccce
Confidence            35789999998888999999999999999999999999999999999985  5 89999999998764210     0111


Q ss_pred             CCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce------EEE-ecCcccHHHHHHHHHh
Q 026725          150 SFKAED--------RVENIRR-------------------IGEVAKLFADAGVI------CIA-CLISPYRKDRDACRSM  195 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~l  195 (234)
                      ++.+++        ..+.+..                   ...+...+...++.      ... .++.+.++....++.+
T Consensus        80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al  159 (243)
T TIGR01978        80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA  159 (243)
T ss_pred             EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence            221111        0111100                   00112222222221      111 2555667777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++....+.+++.+++
T Consensus       160 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  189 (243)
T TIGR01978       160 LLEPKL--AILDEIDSGLDIDALKIVAEGINR  189 (243)
T ss_pred             hcCCCE--EEecCCcccCCHHHHHHHHHHHHH
Confidence            999998  899999999988888888887764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=3.6e-20  Score=159.66  Aligned_cols=150  Identities=14%  Similarity=0.163  Sum_probs=107.1

Q ss_pred             ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      ++++++|+++.|+  +..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....    ...
T Consensus         6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKK   84 (271)
T ss_pred             eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcc
Confidence            4788999999995  5679999999999999999999999999999999999988 89999999998874211    111


Q ss_pred             CCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +++.+++.         .+++...            ..+..++...++.     ....++.+.++....+++++..+.+ 
T Consensus        85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-  163 (271)
T PRK13632         85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI-  163 (271)
T ss_pred             eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            23322221         1111110            0011112222221     1123345566777889999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..|+......+++.+++
T Consensus       164 -llLDEP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        164 -IIFDESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHHH
Confidence             899999999998888888887764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=3.6e-19  Score=146.17  Aligned_cols=146  Identities=13%  Similarity=0.078  Sum_probs=100.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh--
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~--  154 (234)
                      ++++|+++.|++..+++ +||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++.......+++.++  
T Consensus         2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNIAKPYCTYIGHNL   79 (195)
T ss_pred             eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChhhhhhEEeccCCc
Confidence            56789999998765555 999999999999999999999999999999988 89999999998764211000011110  


Q ss_pred             ------hHHHHHHHH-------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026725          155 ------DRVENIRRI-------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR  216 (234)
Q Consensus       155 ------~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R  216 (234)
                            ...+++...       ..+...+...++.     ....++.+.++....+++++..+.+  +++|||+..++..
T Consensus        80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~--lllDEP~~~LD~~  157 (195)
T PRK13541         80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL--WLLDEVETNLSKE  157 (195)
T ss_pred             CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHH
Confidence                  111111110       0112222222221     1123455566677888999999988  8999999999888


Q ss_pred             chhhHHHHHH
Q 026725          217 DPKGLYKLAR  226 (234)
Q Consensus       217 ~~~~l~~~~~  226 (234)
                      ....+++.++
T Consensus       158 ~~~~l~~~l~  167 (195)
T PRK13541        158 NRDLLNNLIV  167 (195)
T ss_pred             HHHHHHHHHH
Confidence            8888888775

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.80  E-value=1.4e-19  Score=143.62  Aligned_cols=124  Identities=23%  Similarity=0.312  Sum_probs=98.9

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHH
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE  158 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~  158 (234)
                      ++++++.|.+..+++++||++++|++++|+|+||||||||+++|+|+++ +.+|+|+++|.++..       ....+...
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~-------~~~~~~~~   73 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK-------LPLEELRR   73 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEccc-------CCHHHHHh
Confidence            4678889987789999999999999999999999999999999999998 899999999987652       11111111


Q ss_pred             HHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                            .+++++|         ++.+.++....++.++..+.+  +++|||+..++.+....+++.+++
T Consensus        74 ------~i~~~~q---------lS~G~~~r~~l~~~l~~~~~i--~ilDEp~~~lD~~~~~~l~~~l~~  125 (157)
T cd00267          74 ------RIGYVPQ---------LSGGQRQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELLRE  125 (157)
T ss_pred             ------ceEEEee---------CCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence                  2222222         555666667788899988888  899999999998888888887764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.80  E-value=9.9e-20  Score=152.41  Aligned_cols=148  Identities=15%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             ceeeceeeecCC-------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc--Cc--cccccc
Q 026725           77 AKSTNILWHKNS-------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD--GD--NCRHGL  145 (234)
Q Consensus        77 ~~~~~l~~~~~~-------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~--g~--~v~~~~  145 (234)
                      ++++|+++.|++       ..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++  |.  ++....
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcC
Confidence            678899999962       479999999999999999999999999999999999988 899999998  42  332100


Q ss_pred             --------cccCCCChhhH--------HHHHHH------------HHHHHHHHHhcCce------EEEecCcccHHHHHH
Q 026725          146 --------NRDLSFKAEDR--------VENIRR------------IGEVAKLFADAGVI------CIACLISPYRKDRDA  191 (234)
Q Consensus       146 --------~~~~~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  191 (234)
                              ...+++.+++.        .+++..            ...+...+..+++.      ....++.+.++....
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence                    00111111110        011100            00112222223321      122345556677788


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++.++..+.+  +++|||+..++......+++.+++
T Consensus       161 aral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  194 (224)
T TIGR02324       161 ARGFIADYPI--LLLDEPTASLDAANRQVVVELIAE  194 (224)
T ss_pred             HHHHhcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999988  899999999988888888887764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.80  E-value=6.6e-19  Score=149.64  Aligned_cols=148  Identities=19%  Similarity=0.167  Sum_probs=104.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc------c
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------L  145 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~------~  145 (234)
                      ++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |.     +|+|.++|+++...      .
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~   80 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVEL   80 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHH
Confidence            578999999998889999999999999999999999999999999999987 77     99999999887421      0


Q ss_pred             cccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce----E-----EEecCcccHHHHHHHHHhC
Q 026725          146 NRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI----C-----IACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~ll  196 (234)
                      ...+++.+++       ..+++...             ..+...+...++.    .     ...++.+.++....+++++
T Consensus        81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  160 (247)
T TIGR00972        81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA  160 (247)
T ss_pred             HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            0111221111       11111100             0111122222322    1     1223455667778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++......+++.+++
T Consensus       161 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  189 (247)
T TIGR00972       161 VEPEV--LLLDEPTSALDPIATGKIEELIQE  189 (247)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99988  899999999988888888777654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.80  E-value=2.5e-19  Score=153.14  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=106.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----------  144 (234)
                      ..++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++...          
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~   82 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVA   82 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccc
Confidence            46889999999998899999999999999999999999999999999999988 8999999999876310          


Q ss_pred             -------ccccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCceE------EEecCcccHHHHH
Q 026725          145 -------LNRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC------IACLISPYRKDRD  190 (234)
Q Consensus       145 -------~~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~  190 (234)
                             ....+++.++        ...+++...             ..+...+...++..      ...++.+.++...
T Consensus        83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~  162 (257)
T PRK10619         83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS  162 (257)
T ss_pred             cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                   0011221111        111221110             01122222233211      1233455667778


Q ss_pred             HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+++++..+.+  +++|||+..++....+.+++.+++
T Consensus       163 laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  197 (257)
T PRK10619        163 IARALAMEPEV--LLFDEPTSALDPELVGEVLRIMQQ  197 (257)
T ss_pred             HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            89999999998  899999999998888888876553

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.80  E-value=2.5e-19  Score=154.05  Aligned_cols=150  Identities=17%  Similarity=0.200  Sum_probs=105.6

Q ss_pred             ccceeeceeeecCC---------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc
Q 026725           75 TVAKSTNILWHKNS---------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~  145 (234)
                      ++++++|++++|+.         ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~   81 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGD   81 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCc
Confidence            46889999999962         469999999999999999999999999999999999998 89999999998764210


Q ss_pred             ----cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026725          146 ----NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI------CIACLISPYRKDRDAC  192 (234)
Q Consensus       146 ----~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  192 (234)
                          ...+++.+++.          .+.+..             ...+...+...++.      ....++.+.++....+
T Consensus        82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  161 (267)
T PRK15112         82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA  161 (267)
T ss_pred             hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence                01122211110          011100             00112223333321      1123445566777888


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.++..+.+  +++|||+..|+....+.+++.+++
T Consensus       162 ral~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  194 (267)
T PRK15112        162 RALILRPKV--IIADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             HHHHhCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999988  899999999988888888877764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.80  E-value=3e-19  Score=149.81  Aligned_cols=147  Identities=18%  Similarity=0.056  Sum_probs=103.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh-h
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-D  155 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~-~  155 (234)
                      +.++++++.|++.++++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|+++.... ....+.+. .
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~-~~~~~~~~~t  100 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSLLG-LGGGFNPELT  100 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchhhc-ccccCCCCCc
Confidence            567889999999999999999999999999999999999999999999988 99999999998753111 00111110 0


Q ss_pred             HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          156 RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       156 ~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ..+++...            ..+...+...++.     .+..++.+.++....++.++..+.+  +++|||+..++....
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~gLD~~~~  178 (224)
T cd03220         101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI--LLIDEVLAVGDAAFQ  178 (224)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHH
Confidence            11111100            0111122222221     1233455566677889999999988  899999999988877


Q ss_pred             hhHHHHHHc
Q 026725          219 KGLYKLARE  227 (234)
Q Consensus       219 ~~l~~~~~~  227 (234)
                      +.+++.+++
T Consensus       179 ~~~~~~l~~  187 (224)
T cd03220         179 EKCQRRLRE  187 (224)
T ss_pred             HHHHHHHHH
Confidence            777776653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.80  E-value=2.1e-19  Score=153.67  Aligned_cols=149  Identities=18%  Similarity=0.124  Sum_probs=105.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-----ccccc-----
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHGL-----  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-----v~~~~-----  145 (234)
                      +++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|++     +....     
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~   84 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERR   84 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHH
Confidence            6889999999988889999999999999999999999999999999999988 899999999987     43210     


Q ss_pred             ---cccCCCChhhH----------HHHHH------------H-HHHHHHHHHhcCce------EEEecCcccHHHHHHHH
Q 026725          146 ---NRDLSFKAEDR----------VENIR------------R-IGEVAKLFADAGVI------CIACLISPYRKDRDACR  193 (234)
Q Consensus       146 ---~~~~~~~~~~~----------~~~~~------------~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  193 (234)
                         ...+++.+++.          .+.+.            . ...+...+..+++.      ....++.+.++....++
T Consensus        85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar  164 (258)
T PRK11701         85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR  164 (258)
T ss_pred             HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence               01112221111          00000            0 00111222223321      11223455667778899


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++..+.+  +++|||+..|+......+++.+++
T Consensus       165 al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  196 (258)
T PRK11701        165 NLVTHPRL--VFMDEPTGGLDVSVQARLLDLLRG  196 (258)
T ss_pred             HHhcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999988  899999999988888888887653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.80  E-value=2.5e-19  Score=143.14  Aligned_cols=129  Identities=19%  Similarity=0.252  Sum_probs=92.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhH
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~  156 (234)
                      +.++++.|.|+..+  =..+++|+.||+++|+||||||||||++.|+|+.. |.+|+|.++|+|.+.       ..|.+|
T Consensus         2 l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~-------~~P~~R   71 (231)
T COG3840           2 LALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTA-------SPPAER   71 (231)
T ss_pred             ccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCc-------CCcccC
Confidence            45678899997654  35778899999999999999999999999999998 999999999999874       222222


Q ss_pred             HHHHHHHHHHHHHHHhcCceEE------------------------------------------EecCcccHHHHHHHHH
Q 026725          157 VENIRRIGEVAKLFADAGVICI------------------------------------------ACLISPYRKDRDACRS  194 (234)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~  194 (234)
                              -++++||..+++..                                          ..++.+.+++...++.
T Consensus        72 --------PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc  143 (231)
T COG3840          72 --------PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC  143 (231)
T ss_pred             --------ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence                    23333333333211                                          1223444555666777


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      ++..-.+  +++|||++.|+.--+.++...+
T Consensus       144 lvR~~Pi--lLLDEPFsALdP~LR~eMl~Lv  172 (231)
T COG3840         144 LVREQPI--LLLDEPFSALDPALRAEMLALV  172 (231)
T ss_pred             HhccCCe--EEecCchhhcCHHHHHHHHHHH
Confidence            7766666  7899999999776666655443

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=8.4e-19  Score=149.43  Aligned_cols=152  Identities=19%  Similarity=0.206  Sum_probs=106.7

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~-----  144 (234)
                      .|+++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++.  +  |++|+|.++|+++...     
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV   83 (253)
T ss_pred             CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence            467899999999988889999999999999999999999999999999999863  1  4789999999876421     


Q ss_pred             -ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026725          145 -LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 -~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  194 (234)
                       ....+++.++       ...+++...             ..+...+...++.         ....++.+.++....+++
T Consensus        84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  163 (253)
T PRK14242         84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA  163 (253)
T ss_pred             HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence             0111122111       111221110             0111122222221         112345566677788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..++......+++.+++
T Consensus       164 l~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  194 (253)
T PRK14242        164 LAVEPEV--LLMDEPASALDPIATQKIEELIHE  194 (253)
T ss_pred             HhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999988  899999999988888888877764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=7.6e-19  Score=146.31  Aligned_cols=150  Identities=17%  Similarity=0.224  Sum_probs=106.0

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-cccCCCCh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDLSFKA  153 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-~~~~~~~~  153 (234)
                      ++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ...+++.+
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~   88 (214)
T PRK13543         10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLG   88 (214)
T ss_pred             ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEee
Confidence            47899999999988889999999999999999999999999999999999988 89999999998764210 00011111


Q ss_pred             h--------hHHHHHHHH---------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          154 E--------DRVENIRRI---------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       154 ~--------~~~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      +        ...+++...         ..+...+...++..     ...++.+.++....++.++..+.+  +++|||+.
T Consensus        89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~  166 (214)
T PRK13543         89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL--WLLDEPYA  166 (214)
T ss_pred             cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence            1        111111110         01111222222211     122345566677888999999998  89999999


Q ss_pred             hhhhcchhhHHHHHHc
Q 026725          212 VCEARDPKGLYKLARE  227 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~~  227 (234)
                      .++....+.+++.+++
T Consensus       167 ~LD~~~~~~l~~~l~~  182 (214)
T PRK13543        167 NLDLEGITLVNRMISA  182 (214)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9988888888777753

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.9e-19  Score=156.18  Aligned_cols=149  Identities=19%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccc
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~  147 (234)
                      ++++++|+++.|+ +..+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++...      ...
T Consensus         4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHh
Confidence            3788999999996 5789999999999999999999999999999999999998 8999999999887310      001


Q ss_pred             cCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          148 DLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       148 ~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      .+++.+++.         .+++...            ..+...+...++.     ....++.+.++....+++++..+.+
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l  162 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV  162 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            122222211         1111100            0111122222221     1233455566777889999999988


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHH
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                        +++|||+..++......+++.++
T Consensus       163 --LilDEPt~gLD~~~~~~l~~~l~  185 (283)
T PRK13636        163 --LVLDEPTAGLDPMGVSEIMKLLV  185 (283)
T ss_pred             --EEEeCCccCCCHHHHHHHHHHHH
Confidence              89999999998888877777665

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=6.8e-19  Score=151.38  Aligned_cols=151  Identities=18%  Similarity=0.129  Sum_probs=107.0

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------  144 (234)
                      +.++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++++    |.+|+|+++|+++...      
T Consensus        18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~   97 (267)
T PRK14235         18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE   97 (267)
T ss_pred             ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence            478899999999988899999999999999999999999999999999999872    3799999999876420      


Q ss_pred             ccccCCCChh-------hHHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026725          145 LNRDLSFKAE-------DRVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  194 (234)
                      ....+++.++       ...+++...              ..+...+...++.         ....++.+.++....++.
T Consensus        98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  177 (267)
T PRK14235         98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA  177 (267)
T ss_pred             HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence            0011111111       111111110              0112222222321         112345566777788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..|+......+++.+++
T Consensus       178 l~~~p~l--llLDEPt~~LD~~~~~~l~~~L~~  208 (267)
T PRK14235        178 IAVSPEV--ILMDEPCSALDPIATAKVEELIDE  208 (267)
T ss_pred             HHcCCCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            9999998  899999999988888888877764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.1e-19  Score=158.08  Aligned_cols=148  Identities=15%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-------
Q 026725           77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (234)
Q Consensus        77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-------  144 (234)
                      ++++|+++.|++     .++++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...       
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHH
Confidence            678999999974     569999999999999999999999999999999999998 9999999999887421       


Q ss_pred             -ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhC
Q 026725          145 -LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSML  196 (234)
Q Consensus       145 -~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll  196 (234)
                       ....+++..++         ..+++...            ..+...+...++.      ....++.+.++....++.++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             00112222221         11111100            0112222223321      11234455667778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|+|+..|+......+++.+++
T Consensus       162 ~~P~l--lllDEPt~~LD~~~~~~l~~~L~~  190 (290)
T PRK13634        162 MEPEV--LVLDEPTAGLDPKGRKEMMEMFYK  190 (290)
T ss_pred             cCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence            99998  899999999988888877776653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=3.1e-19  Score=155.00  Aligned_cols=148  Identities=16%  Similarity=0.141  Sum_probs=104.8

Q ss_pred             ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      ++++|+++.|++     ..+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++....      
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHH
Confidence            678999999963     369999999999999999999999999999999999998 99999999998874310      


Q ss_pred             --cccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhC
Q 026725          146 --NRDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 --~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll  196 (234)
                        ...+++.+++.         .+++...            ..+...+...++.      ....++.+.++....++.++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              11223332221         1111110            0111122222321      11223455667778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|+|+..|+......+++.+++
T Consensus       162 ~~p~i--lllDEPt~~LD~~~~~~l~~~l~~  190 (286)
T PRK13646        162 MNPDI--IVLDEPTAGLDPQSKRQVMRLLKS  190 (286)
T ss_pred             hCCCE--EEEECCcccCCHHHHHHHHHHHHH
Confidence            99988  899999999988888888777763

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.80  E-value=1.2e-19  Score=150.31  Aligned_cols=147  Identities=19%  Similarity=0.114  Sum_probs=102.6

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|+.  ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++....    ...+
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEhHHCCHHHHHhhE
Confidence            5788999999975  479999999999999999999999999999999999988 89999999998764210    0111


Q ss_pred             CCChhh-------HHHHHHHH-----HHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          150 SFKAED-------RVENIRRI-----GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       150 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      ++.+++       ..+++...     ..+...+. .. .....++.+.++....++.++..+.+  +++|+|+..++...
T Consensus        85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-~~-~~~~~LS~G~~qrv~laral~~~p~l--lllDEP~~~LD~~~  160 (207)
T cd03369          85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-VS-EGGLNLSQGQRQLLCLARALLKRPRV--LVLDEATASIDYAT  160 (207)
T ss_pred             EEEecCCcccCccHHHHhcccCCCCHHHHHHHhh-cc-CCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCHHH
Confidence            121111       11111100     00001111 00 01122344556667788999999988  89999999999988


Q ss_pred             hhhHHHHHHc
Q 026725          218 PKGLYKLARE  227 (234)
Q Consensus       218 ~~~l~~~~~~  227 (234)
                      .+.+++.+++
T Consensus       161 ~~~l~~~l~~  170 (207)
T cd03369         161 DALIQKTIRE  170 (207)
T ss_pred             HHHHHHHHHH
Confidence            8888888775

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=9.4e-19  Score=150.70  Aligned_cols=152  Identities=18%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----  144 (234)
                      ..+++++|+++.|++..+++++||+|++||+++|+||||||||||+++|+|+++.    |++|+|.++|.++...     
T Consensus        11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~   90 (269)
T PRK14259         11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV   90 (269)
T ss_pred             CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence            3478999999999988899999999999999999999999999999999998762    4789999999876310     


Q ss_pred             -ccccCCCChhh-------HHHHHHHH-----------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026725          145 -LNRDLSFKAED-------RVENIRRI-----------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       145 -~~~~~~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll  196 (234)
                       ....+++.+++       ..+++...           ..+...+...++         .....++.+.++....+++++
T Consensus        91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259         91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence             00111221111       11111100           001111121111         011234455666778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..|+......+++.+++
T Consensus       171 ~~p~l--llLDEPt~gLD~~~~~~l~~~l~~  199 (269)
T PRK14259        171 IEPEV--ILMDEPCSALDPISTLKIEETMHE  199 (269)
T ss_pred             cCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            99988  899999999998888888887764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.80  E-value=1.4e-19  Score=151.18  Aligned_cols=148  Identities=18%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      ++++|++++|++  ..+++++||++++|++++|+|+||||||||+++|+|++. |.+|+|.++|.++....    ...++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDISKIGLHDLRSRIS   81 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhHhCCHHHHhhhEE
Confidence            578899999964  479999999999999999999999999999999999988 89999999998764210    00111


Q ss_pred             CChhh-------HHHHHHH-----HHHHHHHHHhcCc----------------eEEEecCcccHHHHHHHHHhCCCCCce
Q 026725          151 FKAED-------RVENIRR-----IGEVAKLFADAGV----------------ICIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       151 ~~~~~-------~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +.+++       ..+++..     ...+...+...++                .....++.+.++....++.++..+.+ 
T Consensus        82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l-  160 (221)
T cd03244          82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI-  160 (221)
T ss_pred             EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE-
Confidence            11111       0111100     0000000111110                01123344566777889999999988 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|+|+..++....+.+++.+++
T Consensus       161 -lllDEP~~~LD~~~~~~l~~~l~~  184 (221)
T cd03244         161 -LVLDEATASVDPETDALIQKTIRE  184 (221)
T ss_pred             -EEEeCccccCCHHHHHHHHHHHHH
Confidence             899999999999888888888874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=4.2e-19  Score=153.26  Aligned_cols=147  Identities=18%  Similarity=0.157  Sum_probs=103.6

Q ss_pred             ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026725           77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~  150 (234)
                      ++++|+++.|+ ...+++|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.++....     ...++
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheE
Confidence            67899999995 5679999999999999999999999999999999999988 89999999998874211     01122


Q ss_pred             CChhh---------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          151 FKAED---------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       151 ~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      +.+++         ..+++...            ..+...+...++.     ....++.+.++....+++++..+.+  +
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l  158 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC--L  158 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence            21111         11111100            0111112222221     1233455666777889999999999  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++|||+..++......+++.++
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~  180 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIK  180 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHH
Confidence            9999999998888777777765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=9e-19  Score=150.64  Aligned_cols=155  Identities=16%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             ccCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc--
Q 026725           71 CQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG--  144 (234)
Q Consensus        71 ~~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~--  144 (234)
                      ....++++++|++++|+++++++++||++.+||+++|+|+||||||||+++|+|++.+    |++|+|.++|+++...  
T Consensus        15 ~~~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         15 PEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             CCCCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            3445688999999999988999999999999999999999999999999999999862    4799999999887421  


Q ss_pred             ----ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHH
Q 026725          145 ----LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDA  191 (234)
Q Consensus       145 ----~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  191 (234)
                          ....+++.++       ...+++...             ..+...+...++.         ....++.+.++....
T Consensus        95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l  174 (267)
T PRK14237         95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI  174 (267)
T ss_pred             ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence                0111222111       111222110             0111112222221         112344556667788


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++++..+.+  +++|+|+..|+......+++.+++
T Consensus       175 aral~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  208 (267)
T PRK14237        175 ARAIAVKPDI--LLMDEPASALDPISTMQLEETMFE  208 (267)
T ss_pred             HHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            8999999988  899999999998888888877764

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.80  E-value=6.4e-20  Score=153.97  Aligned_cols=148  Identities=20%  Similarity=0.184  Sum_probs=101.7

Q ss_pred             ceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           77 AKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      ++++|+++.|++ ..+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....    ...+++
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            578999999974 579999999999999999999999999999999999988 89999999998764210    011122


Q ss_pred             ChhhH-------HHHHHHH------HHHH---------HHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCce
Q 026725          152 KAEDR-------VENIRRI------GEVA---------KLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       152 ~~~~~-------~~~~~~~------~~~~---------~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++.       .+++...      ..+.         ..+...  +.     .....++.+.++....++.++..+.+ 
T Consensus        82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l-  160 (229)
T cd03254          82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI-  160 (229)
T ss_pred             ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE-
Confidence            11111       0110000      0000         000000  00     00123445566777889999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..|+....+.+++.+++
T Consensus       161 -lllDEP~~~LD~~~~~~l~~~l~~  184 (229)
T cd03254         161 -LILDEATSNIDTETEKLIQEALEK  184 (229)
T ss_pred             -EEEeCccccCCHHHHHHHHHHHHH
Confidence             899999999988888888777764

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.7e-19  Score=156.67  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=106.0

Q ss_pred             cceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------
Q 026725           76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------  144 (234)
                      .++++|+++.|++     ..+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...      
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNL   80 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchH
Confidence            3678999999974     469999999999999999999999999999999999998 9999999999886421      


Q ss_pred             --ccccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHh
Q 026725          145 --LNRDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 --~~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l  195 (234)
                        ....+++.+++.         .+++...            ..+...+...++.      ....++.+.++....++.+
T Consensus        81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence              001122222211         1111100            0112222233331      1133455667777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..|+......+++.+++
T Consensus       161 ~~~p~l--LlLDEPt~gLD~~~~~~l~~~l~~  190 (287)
T PRK13641        161 AYEPEI--LCLDEPAAGLDPEGRKEMMQLFKD  190 (287)
T ss_pred             HcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888877764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.79  E-value=1.5e-19  Score=152.21  Aligned_cols=148  Identities=18%  Similarity=0.207  Sum_probs=101.3

Q ss_pred             ceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           77 AKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      ++++|+++.|++.  .+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....    ...++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            3578999999765  79999999999999999999999999999999999998 89999999998764210    00011


Q ss_pred             CChhh-------HHHHHHH---------HH------HHHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAED-------RVENIRR---------IG------EVAKLFADA--GVI-----CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~-------~~~~~~~---------~~------~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.+++       ..+++..         ..      .+...+...  +..     ....++.+.++....+++++..+.+
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            11110       1111100         00      001111111  111     0122345566777888999999988


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|+|+..|+......+++.+++
T Consensus       160 --llLDEP~~~LD~~~~~~l~~~l~~  183 (234)
T cd03251         160 --LILDEATSALDTESERLVQAALER  183 (234)
T ss_pred             --EEEeCccccCCHHHHHHHHHHHHH
Confidence              899999999998888888887764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.9e-19  Score=151.60  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCcccccc----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRHG----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~~~----  144 (234)
                      .++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |     .+|+|+++|+++...    
T Consensus         5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND-LVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCcCCCCceEEEECCEecccccccH
Confidence            457899999999988889999999999999999999999999999999999987 5     489999999876310    


Q ss_pred             --ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026725          145 --LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR  193 (234)
Q Consensus       145 --~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  193 (234)
                        ....+++.+++       ..+++...             ..+...+...++.         ....++.+.++....++
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar  163 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR  163 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence              01111111111       11111110             0111111211210         11234455667778899


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++..+.+  +++|||+..|+......+++.+++
T Consensus       164 al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  195 (254)
T PRK14273        164 TLAIEPNV--ILMDEPTSALDPISTGKIEELIIN  195 (254)
T ss_pred             HHHcCCCE--EEEeCCCcccCHHHHHHHHHHHHH
Confidence            99999988  899999999998888888777764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=7.2e-19  Score=151.23  Aligned_cols=151  Identities=16%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc----cCCccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~----~p~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.    .|++|+|.++|+++...      
T Consensus        20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   99 (268)
T PRK14248         20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN   99 (268)
T ss_pred             ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence            47899999999998889999999999999999999999999999999999753    15789999999887421      


Q ss_pred             ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.++       ...+++...             ..+...+...++.         ....++.+.++....++.+
T Consensus       100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral  179 (268)
T PRK14248        100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL  179 (268)
T ss_pred             HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            0111122111       111111110             0011112222221         1123445566777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..|+......+++.+++
T Consensus       180 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  209 (268)
T PRK14248        180 AMKPAV--LLLDEPASALDPISNAKIEELITE  209 (268)
T ss_pred             hCCCCE--EEEcCCCcccCHHHHHHHHHHHHH
Confidence            999988  899999999988888888877764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4e-19  Score=153.22  Aligned_cols=149  Identities=17%  Similarity=0.215  Sum_probs=104.2

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-ccCCCCh
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-~~~~~~~  153 (234)
                      .++++|+++.|+ +..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..... ..+++.+
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~   84 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVP   84 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEec
Confidence            578899999995 5789999999999999999999999999999999999988 899999999987532100 0011111


Q ss_pred             hh----------HHHHH---------------H-HHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          154 ED----------RVENI---------------R-RIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       154 ~~----------~~~~~---------------~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      ++          ..+.+               . .-..+...+...++.     ....++.+.++....+++++..+.+ 
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l-  163 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV-  163 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            10          00000               0 000111122222221     1233455667777889999999988 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..++....+.+++.+++
T Consensus       164 -lllDEPt~~LD~~~~~~l~~~L~~  187 (272)
T PRK15056        164 -ILLDEPFTGVDVKTEARIISLLRE  187 (272)
T ss_pred             -EEEeCCCccCCHHHHHHHHHHHHH
Confidence             899999999988888888877753

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=7.6e-20  Score=154.17  Aligned_cols=143  Identities=19%  Similarity=0.222  Sum_probs=101.1

Q ss_pred             ccceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc--c---cccc
Q 026725           75 TVAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--G---LNRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~--~---~~~~  148 (234)
                      ++++++++++.|++. .+++++||++++|+.++|+|+||||||||+++++|++. |.+|.|.++|.++..  .   ....
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcc
Confidence            367889999999765 89999999999999999999999999999999999999 999999999987541  0   0000


Q ss_pred             ---------------------------CCCChhhHHHHHHHHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhC
Q 026725          149 ---------------------------LSFKAEDRVENIRRIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       149 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll  196 (234)
                                                 .+++.++   ...   .+...+...++     .....++.+.+++..+|..+.
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e---~~~---rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa  154 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREE---IEE---RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA  154 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHH---HHH---HHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence                                       1112111   111   12222222222     122334555566667777777


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+.+  +++|||++.|+.+....+.+.++
T Consensus       155 ~~P~i--liLDEPta~LD~~~~~~l~~~l~  182 (235)
T COG1122         155 MGPEI--LLLDEPTAGLDPKGRRELLELLK  182 (235)
T ss_pred             cCCCE--EEEcCCCCCCCHHHHHHHHHHHH
Confidence            77777  89999999998877777666554

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.79  E-value=5.2e-19  Score=151.89  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             cceeeceeeecC---------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-
Q 026725           76 VAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-  145 (234)
Q Consensus        76 ~~~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-  145 (234)
                      +++++|+++.|+         ++.+++|+||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|+++.... 
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCH
Confidence            467899999995         3679999999999999999999999999999999999988 99999999998764210 


Q ss_pred             ------cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce-E-----EEecCcccHHHHH
Q 026725          146 ------NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI-C-----IACLISPYRKDRD  190 (234)
Q Consensus       146 ------~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~  190 (234)
                            ...+++.+++.          .+++..             ...+...+...++. .     ...++.+.++...
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~  160 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN  160 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence                  01122211110          011100             00112223333331 1     1223455667778


Q ss_pred             HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+++++..+.+  +++|||+..|+....+.+++.+++
T Consensus       161 laral~~~p~i--llLDEPt~~LD~~~~~~l~~~l~~  195 (265)
T TIGR02769       161 IARALAVKPKL--IVLDEAVSNLDMVLQAVILELLRK  195 (265)
T ss_pred             HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            89999999988  899999999988877777777653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1e-18  Score=148.93  Aligned_cols=149  Identities=19%  Similarity=0.126  Sum_probs=105.0

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCccccc--c----
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH--G----  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~~--~----  144 (234)
                      +++++|+++.|++..+++|+||++.+||+++|+||||||||||+++|+|+++ |     .+|+|.++|+++..  .    
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE-LNEEARVEGEVRLFGRNIYSPDVDPIE   82 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-cccCCCCceEEEECCEEccccccChHH
Confidence            6789999999988889999999999999999999999999999999999987 5     48999999987741  0    


Q ss_pred             ccccCCCChhh--------HHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026725          145 LNRDLSFKAED--------RVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR  193 (234)
Q Consensus       145 ~~~~~~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  193 (234)
                      ....+++.+++        ..+++...              ..+...+...++.         ....++.+.++....++
T Consensus        83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  162 (253)
T PRK14267         83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR  162 (253)
T ss_pred             HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence            00111111111        11111110              0112222222221         11223445566778889


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++..+.+  +++|||+..++....+.+++.+++
T Consensus       163 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  194 (253)
T PRK14267        163 ALAMKPKI--LLMDEPTANIDPVGTAKIEELLFE  194 (253)
T ss_pred             HHhcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999988  899999999988888888887764

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.79  E-value=7.5e-19  Score=146.60  Aligned_cols=148  Identities=22%  Similarity=0.239  Sum_probs=102.8

Q ss_pred             ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      ++++|+++.|++  +.+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....    ...++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIG   81 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            568899999975  579999999999999999999999999999999999987 89999999998753210    00011


Q ss_pred             CChh-------hHHHHHHHH------HHHHHHHHhcCc------e----------EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAE-------DRVENIRRI------GEVAKLFADAGV------I----------CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~-------~~~~~~~~~------~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.++       ...+++...      ..+...+...++      .          ....++.+.++....+++++..+.+
T Consensus        82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l  161 (220)
T cd03245          82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI  161 (220)
T ss_pred             EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            1111       111111000      000111111111      0          0123455667777889999999988


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..|+......+++.+++
T Consensus       162 --lllDEPt~~LD~~~~~~l~~~l~~  185 (220)
T cd03245         162 --LLLDEPTSAMDMNSEERLKERLRQ  185 (220)
T ss_pred             --EEEeCccccCCHHHHHHHHHHHHH
Confidence              899999999999999988888875

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.8e-19  Score=153.96  Aligned_cols=150  Identities=17%  Similarity=0.193  Sum_probs=106.6

Q ss_pred             ccceeeceeeecCC------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---
Q 026725           75 TVAKSTNILWHKNS------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---  145 (234)
                      ++++++|+++.|++      +.+++++||++++||+++|+|+||||||||+++|+|++. |++|+|.++|.++....   
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~   81 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLW   81 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHH
Confidence            46889999999963      469999999999999999999999999999999999998 89999999998874311   


Q ss_pred             --cccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026725          146 --NRDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       146 --~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~  197 (234)
                        ...+++.+++.         .+.+...            ..+...+...++.     ....++.+.++....++.++.
T Consensus        82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~  161 (280)
T PRK13633         82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM  161 (280)
T ss_pred             HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence              11122222221         1111100            0111122222221     113345556677788999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..|+......+++.+++
T Consensus       162 ~p~l--lllDEPt~gLD~~~~~~l~~~l~~  189 (280)
T PRK13633        162 RPEC--IIFDEPTAMLDPSGRREVVNTIKE  189 (280)
T ss_pred             CCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9988  899999999999888888877763

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.1e-18  Score=149.17  Aligned_cols=152  Identities=15%  Similarity=0.152  Sum_probs=107.0

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----  144 (234)
                      .++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++++    |++|+|.++|+++...     
T Consensus        10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   89 (258)
T PRK14268         10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV   89 (258)
T ss_pred             ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence            4578999999999888899999999999999999999999999999999998862    3799999999876421     


Q ss_pred             -ccccCCCChh-------hHHHHHHHHH------------HHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          145 -LNRDLSFKAE-------DRVENIRRIG------------EVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 -~~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                       ....+++.++       ...+++....            .+...+...++.         ....++.+.++....++++
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  169 (258)
T PRK14268         90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL  169 (258)
T ss_pred             HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence             0111122111       1111111100            111122222221         1123445566777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++......+++.+++
T Consensus       170 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  199 (258)
T PRK14268        170 AVKPKI--ILFDEPTSALDPISTARIEDLIMN  199 (258)
T ss_pred             HcCCCE--EEEeCCCcccCHHHHHHHHHHHHH
Confidence            999988  899999999998888888887764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.79  E-value=5e-19  Score=164.28  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=106.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      +++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++....    ...+++
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~   81 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSD   81 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhce
Confidence            5789999999988889999999999999999999999999999999999988 89999999887653210    000111


Q ss_pred             Chhh----------------HHHHHH----HHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED----------------RVENIR----RIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~----------------~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      .+++                ..+...    .-..+...+...++.     ....++.+.+++...++.++..+.+  +++
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llL  159 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL--LIL  159 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            1110                001000    000112222222221     2234456677788899999999988  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+....+.+++.+++
T Consensus       160 DEPt~~LD~~~~~~l~~~l~~  180 (490)
T PRK10938        160 DEPFDGLDVASRQQLAELLAS  180 (490)
T ss_pred             cCCcccCCHHHHHHHHHHHHH
Confidence            999999988888888777654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.79  E-value=7e-19  Score=150.76  Aligned_cols=150  Identities=17%  Similarity=0.223  Sum_probs=104.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL------  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~------  145 (234)
                      ++++++|+++.|++..+++++||++.+||+++|+||||||||||+++|+|+++ |+   +|+|+++|.++....      
T Consensus         3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~~~~~~~~~   81 (262)
T PRK09984          3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQREGRLARDI   81 (262)
T ss_pred             cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEecccccccchhH
Confidence            46889999999998899999999999999999999999999999999999987 54   599999998764210      


Q ss_pred             ---cccCCCChhh--------HHHHHHH--------------------HHHHHHHHHhcCce-----EEEecCcccHHHH
Q 026725          146 ---NRDLSFKAED--------RVENIRR--------------------IGEVAKLFADAGVI-----CIACLISPYRKDR  189 (234)
Q Consensus       146 ---~~~~~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  189 (234)
                         ...+++.+++        ..+++..                    ...+...+...++.     ....++.+.++..
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv  161 (262)
T PRK09984         82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV  161 (262)
T ss_pred             HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence               0011111111        1111110                    00111122222221     1123345566677


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+++++..+.+  +++|||+..|+......+++.+++
T Consensus       162 ~laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  197 (262)
T PRK09984        162 AIARALMQQAKV--ILADEPIASLDPESARIVMDTLRD  197 (262)
T ss_pred             HHHHHHhcCCCE--EEecCccccCCHHHHHHHHHHHHH
Confidence            888999999988  899999999998888888877764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.79  E-value=1.1e-18  Score=149.05  Aligned_cols=148  Identities=21%  Similarity=0.240  Sum_probs=103.6

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFK  152 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~  152 (234)
                      ++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++....    ...+++.
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            467899999998899999999999999999999999999999999999988 89999999998764210    0001111


Q ss_pred             hhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          153 AED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       153 ~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++        ..+++..                ...+...+...++.     ....++.+.++....+++++..+.+  
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--  158 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL--  158 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence            111        1111110                00111112222221     1123445566777888999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|+|+..++......+.+.+++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~  182 (256)
T TIGR03873       159 LLLDEPTNHLDVRAQLETLALVRE  182 (256)
T ss_pred             EEEcCccccCCHHHHHHHHHHHHH
Confidence            899999999988888877777654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.3e-18  Score=149.05  Aligned_cols=152  Identities=18%  Similarity=0.173  Sum_probs=106.2

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----  144 (234)
                      ...++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|++.+    |++|+|.++|+++...     
T Consensus        11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~   90 (260)
T PRK10744         11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA   90 (260)
T ss_pred             CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence            3468899999999988899999999999999999999999999999999998751    4789999999886420     


Q ss_pred             -ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHH
Q 026725          145 -LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 -~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  194 (234)
                       ....+++.+++       ..+++...             ..+...+...++         .....++.+.++....+++
T Consensus        91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara  170 (260)
T PRK10744         91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG  170 (260)
T ss_pred             HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence             01111111111       11111100             011112222221         1112345566677788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..|+....+.+++.+++
T Consensus       171 l~~~p~l--llLDEPt~~LD~~~~~~l~~~L~~  201 (260)
T PRK10744        171 IAIRPEV--LLLDEPCSALDPISTGRIEELITE  201 (260)
T ss_pred             HHCCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999998  899999999988888888877764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.2e-18  Score=148.11  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=106.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--cCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|++.  .|.+|+|.++|+++....    ...+
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i   81 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV   81 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence            4678999999998889999999999999999999999999999999999874  268999999998874310    0111


Q ss_pred             CCChhh-------HHHHHHHH--------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHhCCCC
Q 026725          150 SFKAED-------RVENIRRI--------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       150 ~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      ++.+++       ..+++...              ..+...+...++.         ....++.+.++....+++++..+
T Consensus        82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  161 (246)
T PRK14269         82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP  161 (246)
T ss_pred             EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            111111       11111100              0112222322331         11234555667778899999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|+|+..++......+++.+++
T Consensus       162 ~l--llLDEP~~~LD~~~~~~l~~~l~~  187 (246)
T PRK14269        162 KL--LLLDEPTSALDPISSGVIEELLKE  187 (246)
T ss_pred             CE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            99  899999999988888888887765

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=6.2e-19  Score=152.53  Aligned_cols=148  Identities=14%  Similarity=0.081  Sum_probs=104.4

Q ss_pred             ceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           77 AKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        77 ~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      ++++|+++.|++     .++++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....      
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHH
Confidence            678999999974     469999999999999999999999999999999999988 89999999998764210      


Q ss_pred             --cccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhC
Q 026725          146 --NRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 --~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll  196 (234)
                        ...+++.+++         ..+++...            ..+...+...++.      ....++.+.++....+++++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              0112222221         11111110            0011122222321      11234556667778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..|+....+.+++.+++
T Consensus       162 ~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  190 (280)
T PRK13649        162 MEPKI--LVLDEPTAGLDPKGRKELMTLFKK  190 (280)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99988  899999999988888888887664

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.79  E-value=9.8e-19  Score=148.87  Aligned_cols=151  Identities=14%  Similarity=0.104  Sum_probs=106.3

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh--cccCCccEEEEcCcccccccc---c-
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKLTYILDGDNCRHGLN---R-  147 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl--l~~p~~G~i~~~g~~v~~~~~---~-  147 (234)
                      .++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|+  ++ |.+|+|+++|.++.....   . 
T Consensus         5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T CHL00131          5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-ILEGDILFKGESILDLEPEERAH   83 (252)
T ss_pred             CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-CCCceEEECCEEcccCChhhhhe
Confidence            3478999999999888899999999999999999999999999999999997  45 889999999987643110   0 


Q ss_pred             -cCCCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce------EEE-ecCcccHHHHHHH
Q 026725          148 -DLSFKAED--------RVENIRR-------------------IGEVAKLFADAGVI------CIA-CLISPYRKDRDAC  192 (234)
Q Consensus       148 -~~~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~  192 (234)
                       .+++.+++        ..+.+..                   ...+...+...++.      ... .++.+.++....+
T Consensus        84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la  163 (252)
T CHL00131         84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL  163 (252)
T ss_pred             eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence             01111110        0111100                   00112222222221      111 2455666777889


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++++..+.+  +++|+|+..++......+++.+++
T Consensus       164 ~al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  196 (252)
T CHL00131        164 QMALLDSEL--AILDETDSGLDIDALKIIAEGINK  196 (252)
T ss_pred             HHHHcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999998  899999999998888888887764

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.79  E-value=6.2e-19  Score=146.85  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             cCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026725           72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        72 ~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      ...++++++|++..|+++++|+|+|++|++||.++|+||||||||||+++++|.++ |++|.+.+.|+......      
T Consensus        27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~------   99 (257)
T COG1119          27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGE------   99 (257)
T ss_pred             CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCc------
Confidence            34568999999999999999999999999999999999999999999999999887 88999999988765311      


Q ss_pred             ChhhHHHHHHHHH--------------------------------------HHHHHHHhcCc-----eEEEecCcccHHH
Q 026725          152 KAEDRVENIRRIG--------------------------------------EVAKLFADAGV-----ICIACLISPYRKD  188 (234)
Q Consensus       152 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~-----~~~~~~~~~~~~~  188 (234)
                      ...+.++.++.+.                                      ....++..++.     ..+..++.+.++.
T Consensus       100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr  179 (257)
T COG1119         100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR  179 (257)
T ss_pred             chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence            0022222221110                                      00001111110     0111112233344


Q ss_pred             HHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       189 ~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      .-++|+++..+.+  +++|||++.++--.+..+...+.
T Consensus       180 vLiaRALv~~P~L--LiLDEP~~GLDl~~re~ll~~l~  215 (257)
T COG1119         180 VLIARALVKDPEL--LILDEPAQGLDLIAREQLLNRLE  215 (257)
T ss_pred             HHHHHHHhcCCCE--EEecCccccCChHHHHHHHHHHH
Confidence            4578899999999  89999999997777766666554

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.6e-19  Score=159.88  Aligned_cols=151  Identities=15%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             ccceeeceeeec----CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc---CCccEEEEcCccccccc--
Q 026725           75 TVAKSTNILWHK----NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHGL--  145 (234)
Q Consensus        75 ~~~~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~---p~~G~i~~~g~~v~~~~--  145 (234)
                      ++++++|+++.|    +...+++|+||+|++||+++|+|+||||||||+++|+|+++.   +++|+|+++|+++....  
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            368899999999    446799999999999999999999999999999999999852   47899999998874311  


Q ss_pred             ------cccCCCChhhH----------HHHHHH------------------HHHHHHHHHhcCceE--------EEecCc
Q 026725          146 ------NRDLSFKAEDR----------VENIRR------------------IGEVAKLFADAGVIC--------IACLIS  183 (234)
Q Consensus       146 ------~~~~~~~~~~~----------~~~~~~------------------~~~~~~~~~~~~~~~--------~~~~~~  183 (234)
                            ...+++..++.          .+.+..                  ...+...+...++..        ...++.
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence                  01122222111          011100                  001222233333321        123455


Q ss_pred             ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+++..++++++..+.+  +++|||+..|+......+.+.+++
T Consensus       162 G~~QRv~iArAL~~~P~l--lilDEPts~LD~~~~~~i~~lL~~  203 (330)
T PRK15093        162 GECQKVMIAIALANQPRL--LIADEPTNAMEPTTQAQIFRLLTR  203 (330)
T ss_pred             HHHHHHHHHHHHHCCCCE--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence            667777889999999998  899999999987777777766653

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.79  E-value=1.6e-18  Score=146.01  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=105.1

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChhh
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAED  155 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~~  155 (234)
                      +++|++++|+++.+++++||++++|++++|+|+||||||||+++|+|+++ |..|+|.++|+++....  ...+++.+++
T Consensus         2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (232)
T cd03300           2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQN   80 (232)
T ss_pred             EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecc
Confidence            57899999988899999999999999999999999999999999999998 89999999998764311  1111111111


Q ss_pred             --------HHHHHHHH------------HHHHHHHHhcCceEE-----EecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          156 --------RVENIRRI------------GEVAKLFADAGVICI-----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       156 --------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                              ..+++...            ..+...+...++...     ..++.+.++....+++++..+.+  +++|+|+
T Consensus        81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~  158 (232)
T cd03300          81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV--LLLDEPL  158 (232)
T ss_pred             cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence                    11111110            011122222233211     22345556677888999999988  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      ..++....+.+++.+++
T Consensus       159 ~gLD~~~~~~l~~~l~~  175 (232)
T cd03300         159 GALDLKLRKDMQLELKR  175 (232)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999887764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.79  E-value=1.8e-19  Score=173.40  Aligned_cols=149  Identities=19%  Similarity=0.166  Sum_probs=106.3

Q ss_pred             cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|++++|+  +..+++|+||++++||.++|+|+||||||||+|+|+|++. |++|+|++||.++.....    ..+
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i  529 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQL  529 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhcc
Confidence            478999999995  3579999999999999999999999999999999999998 999999999998864110    011


Q ss_pred             CCChhh-------HHHHHH-----------HHHHH---HHHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCCc
Q 026725          150 SFKAED-------RVENIR-----------RIGEV---AKLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       150 ~~~~~~-------~~~~~~-----------~~~~~---~~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      ++.+++       .++++.           ...+.   ...... + +.- .+    ..++.+.+++-..+|+++..+.+
T Consensus       530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i  609 (686)
T TIGR03797       530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI  609 (686)
T ss_pred             EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            111111       011111           00010   111111 0 110 11    22355677888899999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.++....+.+++.+++
T Consensus       610 --LiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       610 --LLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             --EEEeCCccCCCHHHHHHHHHHHHH
Confidence              899999999999988888888775

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.79  E-value=6.4e-19  Score=148.93  Aligned_cols=148  Identities=22%  Similarity=0.222  Sum_probs=105.3

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~  154 (234)
                      ++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++....  ...+++.++
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEec
Confidence            357899999998899999999999999999999999999999999999988 89999999998864311  111111111


Q ss_pred             h--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 D--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 ~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      +        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +++|+|
T Consensus        80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP  157 (237)
T TIGR00968        80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV--LLLDEP  157 (237)
T ss_pred             ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            1        11111110            01112222222211     123445566777889999999988  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++......+++.+.+
T Consensus       158 ~~~LD~~~~~~~~~~l~~  175 (237)
T TIGR00968       158 FGALDAKVRKELRSWLRK  175 (237)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999998888888887764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.79  E-value=1.9e-19  Score=150.93  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=104.8

Q ss_pred             CcccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----
Q 026725           73 NSTVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----  145 (234)
Q Consensus        73 ~~~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----  145 (234)
                      ..++++++|+++.|++   ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....    
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~   86 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-PQGGQVLLDGKPISQYEHKYL   86 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECCCchHHcCHHHH
Confidence            3457899999999974   469999999999999999999999999999999999988 89999999998764210    


Q ss_pred             cccCCCChhhH-------HHHHHH---------HHH------HHHHHHhc--CceE-----EEecCcccHHHHHHHHHhC
Q 026725          146 NRDLSFKAEDR-------VENIRR---------IGE------VAKLFADA--GVIC-----IACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 ~~~~~~~~~~~-------~~~~~~---------~~~------~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~ll  196 (234)
                      ...+++.+++.       .+++..         ...      +...+..+  ++..     ...++.+.++....++.++
T Consensus        87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~  166 (226)
T cd03248          87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI  166 (226)
T ss_pred             HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence            00111111110       011100         000      00111111  1111     1223445566778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++......+++.+++
T Consensus       167 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  195 (226)
T cd03248         167 RNPQV--LILDEATSALDAESEQQVQQALYD  195 (226)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99998  899999999998888888887764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.79  E-value=6e-19  Score=164.18  Aligned_cols=150  Identities=19%  Similarity=0.217  Sum_probs=107.4

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|++++|++..+++|+||++.+|++++|+||||||||||+|+|+|+++ |++|+|.++|.++....     ...+
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCE
Confidence            36889999999998889999999999999999999999999999999999998 89999999998763210     0111


Q ss_pred             CCChhh--------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAED--------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++        ..+++..                ...+...+...++.     ....++.+.++....+++++..+.
T Consensus        82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  161 (501)
T PRK10762         82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK  161 (501)
T ss_pred             EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            111111        0010000                00122223333321     123345666777889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.|+......+++.+++
T Consensus       162 l--llLDEPt~~LD~~~~~~l~~~l~~  186 (501)
T PRK10762        162 V--IIMDEPTDALTDTETESLFRVIRE  186 (501)
T ss_pred             E--EEEeCCcCCCCHHHHHHHHHHHHH
Confidence            9  899999999988888888766654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.79  E-value=1.1e-19  Score=153.29  Aligned_cols=148  Identities=18%  Similarity=0.205  Sum_probs=101.5

Q ss_pred             ceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           77 AKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      ++++|+++.|+.  ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++....    ...++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEE
Confidence            357899999963  579999999999999999999999999999999999998 89999999998764210    00111


Q ss_pred             CChhh-------HHHHHH---------HHHHH------HHHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAED-------RVENIR---------RIGEV------AKLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~-------~~~~~~---------~~~~~------~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.+++       ..+++.         .+...      ...+...  +.     .....++.+.++....+++++..+.+
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            11111       001100         00000      0001000  00     01123455566777889999999988


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..++......+++.+++
T Consensus       160 --lllDEP~~~LD~~~~~~l~~~l~~  183 (237)
T cd03252         160 --LIFDEATSALDYESEHAIMRNMHD  183 (237)
T ss_pred             --EEEeCCcccCCHHHHHHHHHHHHH
Confidence              899999999998888888888764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.79  E-value=1.7e-19  Score=152.38  Aligned_cols=148  Identities=19%  Similarity=0.218  Sum_probs=100.6

Q ss_pred             ceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           77 AKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        77 ~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      ++++|+++.|++   ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|.++....    ...+
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i   79 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQI   79 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhE
Confidence            357899999964   469999999999999999999999999999999999988 89999999998764210    0011


Q ss_pred             CCChhhH-------HHHHHH---------HH---H---HHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAEDR-------VENIRR---------IG---E---VAKLFADA--GVI-----CIACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~~-------~~~~~~---------~~---~---~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++.       .+.+..         ..   .   +.......  +..     ....++.+.++....++.++..+.
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~  159 (238)
T cd03249          80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK  159 (238)
T ss_pred             EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence            1211110       011100         00   0   00000000  000     012234455666778889999998


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||+..|+......+++.+++
T Consensus       160 l--lllDEP~~gLD~~~~~~l~~~l~~  184 (238)
T cd03249         160 I--LLLDEATSALDAESEKLVQEALDR  184 (238)
T ss_pred             E--EEEeCccccCCHHHHHHHHHHHHH
Confidence            8  899999999998888888888864

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.79  E-value=1.1e-19  Score=156.84  Aligned_cols=148  Identities=18%  Similarity=0.131  Sum_probs=101.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--------ccEEEEcCcccccccc--
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--------KLTYILDGDNCRHGLN--  146 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--------~G~i~~~g~~v~~~~~--  146 (234)
                      ++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |.        +|+|.++|+++.....  
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEPLAAIDAPR   80 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEEcccCCHHH
Confidence            678999999998899999999999999999999999999999999999987 76        8999999987642100  


Q ss_pred             --ccCCCChh--------hHHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHh
Q 026725          147 --RDLSFKAE--------DRVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       147 --~~~~~~~~--------~~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l  195 (234)
                        ..+++.++        ...+++..                ...+...+...++.     ....++.+.++....++.+
T Consensus        81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral  160 (272)
T PRK13547         81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL  160 (272)
T ss_pred             HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence              00011000        11111100                00111122222221     1223445556667788888


Q ss_pred             C---------CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 L---------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l---------~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +         ..+.+  +++|||+..++....+.+++.+++
T Consensus       161 ~~~~~~~~~~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  199 (272)
T PRK13547        161 AQLWPPHDAAQPPRY--LLLDEPTAALDLAHQHRLLDTVRR  199 (272)
T ss_pred             hccccccccCCCCCE--EEEcCccccCCHHHHHHHHHHHHH
Confidence            8         36777  899999999998888888887764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=9.4e-19  Score=152.15  Aligned_cols=148  Identities=14%  Similarity=0.089  Sum_probs=102.7

Q ss_pred             cceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------
Q 026725           76 VAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------  144 (234)
                      +++++|+++.|+.     ..+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++...      
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccH
Confidence            3678999999963     259999999999999999999999999999999999998 9999999999886410      


Q ss_pred             --ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHHHh
Q 026725          145 --LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 --~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l  195 (234)
                        ....+++..++         ..+++...            ..+...+...++.      ....++.+.++....++.+
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence              00111221111         11111110            0112222222221      1123345566777888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +..+.+  +++|||+..|+......+++.++
T Consensus       160 ~~~p~i--llLDEPt~gLD~~~~~~l~~~l~  188 (288)
T PRK13643        160 AMEPEV--LVLDEPTAGLDPKARIEMMQLFE  188 (288)
T ss_pred             HhCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence            999988  89999999998888877777664

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.7e-18  Score=148.13  Aligned_cols=151  Identities=18%  Similarity=0.174  Sum_probs=105.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+ |   .+|+|+++|+++...      
T Consensus        11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   90 (259)
T PRK14274         11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE   90 (259)
T ss_pred             ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence            478999999999988899999999999999999999999999999999998862 2   589999999887420      


Q ss_pred             ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.++       ...+++...             ..+...+...++.         ....++.+.++....++.+
T Consensus        91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral  170 (259)
T PRK14274         91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL  170 (259)
T ss_pred             HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            0011122111       111111100             0111122222221         1122345566777888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..|+......+++.+++
T Consensus       171 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  200 (259)
T PRK14274        171 ATNPDV--LLMDEPTSALDPVSTRKIEELILK  200 (259)
T ss_pred             hcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888877764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.79  E-value=8.3e-19  Score=148.89  Aligned_cols=148  Identities=14%  Similarity=0.018  Sum_probs=101.9

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccc-----cccCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGL-----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~-----~~~~~  150 (234)
                      ++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++. .|.+|+|.++|.++....     ...++
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF   81 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence            678999999988889999999999999999999999999999999999852 388999999998764211     01122


Q ss_pred             CChhhH--------HHHHHH-------------------HHHHHHHHHhcCce------EE-EecCcccHHHHHHHHHhC
Q 026725          151 FKAEDR--------VENIRR-------------------IGEVAKLFADAGVI------CI-ACLISPYRKDRDACRSML  196 (234)
Q Consensus       151 ~~~~~~--------~~~~~~-------------------~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~ll  196 (234)
                      +..++.        ......                   ...+...+...++.      .. ..++.+.++....+++++
T Consensus        82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~  161 (248)
T PRK09580         82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV  161 (248)
T ss_pred             EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence            211110        000000                   00001111111110      01 134556677778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+.+  +++|||+..++....+.+++.++
T Consensus       162 ~~p~i--llLDEPt~~LD~~~~~~l~~~l~  189 (248)
T PRK09580        162 LEPEL--CILDESDSGLDIDALKIVADGVN  189 (248)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            99998  89999999998888888877554

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=8.6e-19  Score=151.41  Aligned_cols=148  Identities=14%  Similarity=0.184  Sum_probs=103.9

Q ss_pred             ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccC
Q 026725           77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDL  149 (234)
Q Consensus        77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~  149 (234)
                      ++++|+++.|+ ...+++++||++++||+++|+|+||||||||+|+|+|+++ |.+|+|+++|.++....      ...+
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhhe
Confidence            67899999996 4679999999999999999999999999999999999998 89999999998873110      1112


Q ss_pred             CCChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026725          150 SFKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       150 ~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      ++.+++.         .+.+...            ..+...+...++..     ...++.+.++....++.++..+.+  
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--  158 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI--  158 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            2222221         1111100            01112222222211     122344556677888999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++......+++.+++
T Consensus       159 lllDEPt~gLD~~~~~~l~~~l~~  182 (275)
T PRK13639        159 IVLDEPTSGLDPMGASQIMKLLYD  182 (275)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            899999999988888887777763

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.79  E-value=1.1e-19  Score=175.49  Aligned_cols=149  Identities=18%  Similarity=0.167  Sum_probs=106.9

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|++  ..+++|+||++++||.++|+|+||||||||+++|+|++. |++|+|++||.++....    ...+
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i  555 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSV  555 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhhe
Confidence            5889999999974  579999999999999999999999999999999999998 99999999999875311    0111


Q ss_pred             CCChhhH-------HHHH------------HHHHHH---HHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAEDR-------VENI------------RRIGEV---AKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~~-------~~~~------------~~~~~~---~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++.       ++++            ....+.   .......  +.. .+    ..++.+.+++-..+|+++..+.
T Consensus       556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~  635 (710)
T TIGR03796       556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS  635 (710)
T ss_pred             eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            1111110       0111            000011   1111111  111 11    1234566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       636 i--liLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       636 I--LILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             E--EEEECccccCCHHHHHHHHHHHHh
Confidence            9  899999999999999999988876

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.7e-18  Score=139.84  Aligned_cols=141  Identities=16%  Similarity=0.188  Sum_probs=103.4

Q ss_pred             cceeeceeeecCCcc--ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc------
Q 026725           76 VAKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR------  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~------  147 (234)
                      .+.+++++.+|+++.  +++|+|++|.+||.++++||||||||||++.++|+.. |..|+|.++|+.+..+...      
T Consensus         3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gPgaergvVFQ   81 (259)
T COG4525           3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGAERGVVFQ   81 (259)
T ss_pred             eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCCCccceeEec
Confidence            466789999998876  9999999999999999999999999999999999998 9999999999987642210      


Q ss_pred             c-------------------CCCChhhHHHHHHHHHHHHHH--HHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          148 D-------------------LSFKAEDRVENIRRIGEVAKL--FADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       148 ~-------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      .                   .++...++++..   .+....  ++++....+..++.+.+++..+++++...+.+  +++
T Consensus        82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a---~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~--LlL  156 (259)
T COG4525          82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIA---HQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL--LLL  156 (259)
T ss_pred             cCccchhhHHHHHHHHHHHhcCCCHHHHHHHH---HHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce--Eee
Confidence            0                   112222221111   111111  23333344556677788888999999999998  899


Q ss_pred             eCChhhhhhcchhhHH
Q 026725          207 DVPLQVCEARDPKGLY  222 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~  222 (234)
                      |+|+..++.-.++.+-
T Consensus       157 DEPfgAlDa~tRe~mQ  172 (259)
T COG4525         157 DEPFGALDALTREQMQ  172 (259)
T ss_pred             cCchhhHHHHHHHHHH
Confidence            9999999766655543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=7.5e-19  Score=150.28  Aligned_cols=150  Identities=19%  Similarity=0.160  Sum_probs=104.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------L  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------~  145 (234)
                      .++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+    |++|+|.++|+++...      .
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~   83 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV   83 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence            57899999999888899999999999999999999999999999999998862    2699999999876310      0


Q ss_pred             cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026725          146 NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l  195 (234)
                      ...+++..+        ...+++...             ..+...+...++         .....++.+.++....++++
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (258)
T PRK14241         84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI  163 (258)
T ss_pred             hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            011111111        111111100             011112222222         11133455666777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++......+++.+++
T Consensus       164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  193 (258)
T PRK14241        164 AVEPDV--LLMDEPCSALDPISTLAIEDLINE  193 (258)
T ss_pred             hcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888777654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=6.7e-19  Score=149.94  Aligned_cols=151  Identities=17%  Similarity=0.136  Sum_probs=105.4

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc-----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL-----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~-----  145 (234)
                      ++++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|++++    |.+|+|.++|.++....     
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (251)
T PRK14270          3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE   82 (251)
T ss_pred             cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence            478899999999888899999999999999999999999999999999998762    26899999998874210     


Q ss_pred             -cccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          146 -NRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       146 -~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                       ...+++.++       ...+++...             ..+...+...++.         ....++.+.++....++.+
T Consensus        83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  162 (251)
T PRK14270         83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI  162 (251)
T ss_pred             HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence             111111111       111111110             0111122222211         1123345566677888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|+|+..|+......+++.+++
T Consensus       163 ~~~p~l--lllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        163 AVKPDV--ILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888887764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.78  E-value=1.3e-18  Score=162.34  Aligned_cols=150  Identities=19%  Similarity=0.234  Sum_probs=108.3

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....     ...+
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i   88 (510)
T PRK15439         10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGI   88 (510)
T ss_pred             ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCE
Confidence            47899999999998889999999999999999999999999999999999998 89999999998764210     0011


Q ss_pred             CCChhh--------HHHHHHH--------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          150 SFKAED--------RVENIRR--------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++.+++        ..+++..        -..+...+...++..     ...++.+.++....+++++..+.+  +++||
T Consensus        89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l--llLDE  166 (510)
T PRK15439         89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI--LILDE  166 (510)
T ss_pred             EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence            111111        1111100        011222233333321     123455667778899999999998  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..|+......+++.+++
T Consensus       167 Pt~~LD~~~~~~l~~~l~~  185 (510)
T PRK15439        167 PTASLTPAETERLFSRIRE  185 (510)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999988888888877654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.78  E-value=2.8e-19  Score=164.42  Aligned_cols=147  Identities=23%  Similarity=0.228  Sum_probs=100.0

Q ss_pred             CcccceeeceeeecCC-----------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           73 NSTVAKSTNILWHKNS-----------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        73 ~~~~~~~~~l~~~~~~-----------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ..++++++|++++|..           +.+++||||++.+||+++|+|+||||||||+|+|+|++. |++|+|.++|+++
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~  355 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDL  355 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCccc
Confidence            3568999999999973           478999999999999999999999999999999999998 8999999999872


Q ss_pred             cccc-------------cc--cCCCChhhH-----HHHHH---------HHHHHHHHHHhcCceE------EEecCcccH
Q 026725          142 RHGL-------------NR--DLSFKAEDR-----VENIR---------RIGEVAKLFADAGVIC------IACLISPYR  186 (234)
Q Consensus       142 ~~~~-------------~~--~~~~~~~~~-----~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~  186 (234)
                      ....             +.  ..+++|...     .+-+.         +-..+..++..-++-.      ...++.+.+
T Consensus       356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr  435 (539)
T COG1123         356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR  435 (539)
T ss_pred             ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence            1100             00  011222110     00000         0001222233222211      122355667


Q ss_pred             HHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHH
Q 026725          187 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (234)
Q Consensus       187 ~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~  222 (234)
                      ++..+|+++...+.+  +++|||++.|+........
T Consensus       436 QRvaIARALa~~P~l--li~DEp~SaLDvsvqa~Vl  469 (539)
T COG1123         436 QRVAIARALALEPKL--LILDEPVSALDVSVQAQVL  469 (539)
T ss_pred             HHHHHHHHHhcCCCE--EEecCCccccCHHHHHHHH
Confidence            788899999999999  8999999999766554433

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=162.00  Aligned_cols=150  Identities=17%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|++++|++..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++....     ...+
T Consensus         4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i   82 (510)
T PRK09700          4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCe
Confidence            46899999999998889999999999999999999999999999999999998 89999999998764211     0111


Q ss_pred             CCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026725          150 SFKAED--------RVENIRR-------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~  197 (234)
                      ++.+++        ..+++..                   ...+...+...++.     ....++.+.+++...++.++.
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~  162 (510)
T PRK09700         83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML  162 (510)
T ss_pred             EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence            111111        0011100                   00112223333321     123345566777788999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||++.|+......+++.+++
T Consensus       163 ~p~l--llLDEPt~~LD~~~~~~l~~~l~~  190 (510)
T PRK09700        163 DAKV--IIMDEPTSSLTNKEVDYLFLIMNQ  190 (510)
T ss_pred             CCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9998  899999999988888888777654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=3.7e-19  Score=154.71  Aligned_cols=150  Identities=14%  Similarity=0.113  Sum_probs=104.4

Q ss_pred             ccceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-----
Q 026725           75 TVAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-----  144 (234)
                      ..++++|++++|++.     .+++++||++++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++...     
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccc
Confidence            357899999999764     49999999999999999999999999999999999998 8999999999876310     


Q ss_pred             ----ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecCcccHHHHHHHH
Q 026725          145 ----LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLISPYRKDRDACR  193 (234)
Q Consensus       145 ----~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  193 (234)
                          ....+++.+++         ..+++...            ..+...+...++.      ....++.+.++....++
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence                01112222221         11111100            0011122222221      11223455667778899


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++..+.+  +++|||+..|+....+.+++.+++
T Consensus       164 al~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~  195 (289)
T PRK13645        164 IIAMDGNT--LVLDEPTGGLDPKGEEDFINLFER  195 (289)
T ss_pred             HHHhCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999998  899999999988888888776653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.6e-18  Score=147.29  Aligned_cols=152  Identities=20%  Similarity=0.152  Sum_probs=106.1

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----  144 (234)
                      .++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++.+    |.+|+|.++|.++...     
T Consensus        23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~  102 (272)
T PRK14236         23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA  102 (272)
T ss_pred             CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence            4578999999999888899999999999999999999999999999999998862    3799999999887421     


Q ss_pred             -ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026725          145 -LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 -~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  194 (234)
                       ....+++.++       ...+++...             ..+.......++.         ....++.+.++....+++
T Consensus       103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara  182 (272)
T PRK14236        103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA  182 (272)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence             0111111111       111111110             0011112222221         112344556677788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..|+......+++.+++
T Consensus       183 l~~~p~l--llLDEPt~gLD~~~~~~l~~~L~~  213 (272)
T PRK14236        183 IAIEPEV--LLLDEPTSALDPISTLKIEELITE  213 (272)
T ss_pred             HHCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999998  899999999988888777777664

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.78  E-value=5.2e-19  Score=151.26  Aligned_cols=152  Identities=16%  Similarity=0.100  Sum_probs=104.3

Q ss_pred             CcccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----c
Q 026725           73 NSTVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----N  146 (234)
Q Consensus        73 ~~~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~  146 (234)
                      ....++++|++++|+.  ..+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|+++....    .
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-CCCCeEEECCEEhhhCCHHHHh
Confidence            3457899999999976  579999999999999999999999999999999999988 89999999998764211    0


Q ss_pred             ccCCCChhh-------HHHHH-----------HHHH---HHHHHHHhc--CceE-----EEecCcccHHHHHHHHHhCCC
Q 026725          147 RDLSFKAED-------RVENI-----------RRIG---EVAKLFADA--GVIC-----IACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       147 ~~~~~~~~~-------~~~~~-----------~~~~---~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      ..+++.+++       ..+++           ....   .+...+...  +...     ...++.+.++....+++++..
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  174 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK  174 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            011111110       00000           0000   001111111  1100     012344566677889999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|+|+..++......+++.+++
T Consensus       175 p~l--lllDEPt~gLD~~~~~~l~~~l~~  201 (257)
T cd03288         175 SSI--LIMDEATASIDMATENILQKVVMT  201 (257)
T ss_pred             CCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            988  899999999988888888877764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.78  E-value=1.7e-18  Score=143.61  Aligned_cols=146  Identities=17%  Similarity=0.187  Sum_probs=101.1

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~  154 (234)
                      ++++|+++.|++..  .++||++.+||+++|+||||||||||+++|+|+++ |.+|+|.++|.++....  ...+++.++
T Consensus         1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q   77 (211)
T cd03298           1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQ   77 (211)
T ss_pred             CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEec
Confidence            35789999998654  39999999999999999999999999999999998 89999999998764210  000111111


Q ss_pred             --------hHHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 --------DRVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 --------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                              ...+++..            -..+...+...++.     ....++.+.++....+++++..+.+  +++|||
T Consensus        78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l--lllDEP  155 (211)
T cd03298          78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV--LLLDEP  155 (211)
T ss_pred             ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence                    11111110            00122222222321     1233455667777889999999988  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++....+.+++.+++
T Consensus       156 ~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298         156 FAALDPALRAEMLDLVLD  173 (211)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999988888888877763

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.2e-18  Score=143.80  Aligned_cols=137  Identities=18%  Similarity=0.173  Sum_probs=97.8

Q ss_pred             cceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccccccCCCCh
Q 026725           76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~~~~~~~~~  153 (234)
                      +++++|++..-+++ .+|+++|++|++||+++|+||||||||||+++|+|.-. ..++|+|.++|+|+..       +++
T Consensus         3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~-------l~~   75 (251)
T COG0396           3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE-------LSP   75 (251)
T ss_pred             eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc-------CCH
Confidence            68899999999885 99999999999999999999999999999999999642 2678999999999975       333


Q ss_pred             hhHH--------------------HHHHH---------------HHHHHHHHHhc-------CceEEEecCcccHHHHHH
Q 026725          154 EDRV--------------------ENIRR---------------IGEVAKLFADA-------GVICIACLISPYRKDRDA  191 (234)
Q Consensus       154 ~~~~--------------------~~~~~---------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  191 (234)
                      .+|+                    ..++.               ...+.......       ....+.-|+.+.+++.++
T Consensus        76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei  155 (251)
T COG0396          76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI  155 (251)
T ss_pred             hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence            3332                    11110               00010011111       112234456667777788


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l  221 (234)
                      ++-++-.+.+  .++|+|-+.++-..-+..
T Consensus       156 lQ~~~lePkl--~ILDE~DSGLDIdalk~V  183 (251)
T COG0396         156 LQLLLLEPKL--AILDEPDSGLDIDALKIV  183 (251)
T ss_pred             HHHHhcCCCE--EEecCCCcCccHHHHHHH
Confidence            8888888888  899999999955444433

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.78  E-value=1.7e-19  Score=152.02  Aligned_cols=147  Identities=19%  Similarity=0.183  Sum_probs=100.8

Q ss_pred             eeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCC
Q 026725           78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFK  152 (234)
Q Consensus        78 ~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~  152 (234)
                      +++|+++.|+ +..+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....    ...+++.
T Consensus         2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            5789999995 5679999999999999999999999999999999999988 89999999998764210    0001111


Q ss_pred             hhh-------HHHHHHHH------HHH---------HHHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          153 AED-------RVENIRRI------GEV---------AKLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       153 ~~~-------~~~~~~~~------~~~---------~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++       ..+++...      ..+         ...+...  +.     .....++.+.++....++.++..+.+  
T Consensus        81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l--  158 (236)
T cd03253          81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI--  158 (236)
T ss_pred             CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--
Confidence            111       11111000      000         0000000  00     00123445566677889999999998  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|+|+..|+....+.+++.+++
T Consensus       159 lllDEP~~~LD~~~~~~l~~~l~~  182 (236)
T cd03253         159 LLLDEATSALDTHTEREIQAALRD  182 (236)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            899999999998888888887764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1e-18  Score=154.07  Aligned_cols=149  Identities=15%  Similarity=0.106  Sum_probs=105.0

Q ss_pred             ccceeeceeeecCC-----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-----
Q 026725           75 TVAKSTNILWHKNS-----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-----  144 (234)
                      ++++++|+++.|++     ..+++|+||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|.++...     
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEccccccccc
Confidence            57899999999964     359999999999999999999999999999999999998 9999999999776421     


Q ss_pred             ---------------ccccCCCChhh---------HHHHHHHH------------HHHHHHHHhcCce------EEEecC
Q 026725          145 ---------------LNRDLSFKAED---------RVENIRRI------------GEVAKLFADAGVI------CIACLI  182 (234)
Q Consensus       145 ---------------~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~  182 (234)
                                     ....+++..++         ..+++...            ..+...+...++.      ....++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  178 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS  178 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence                           00111221111         11111100            0111112222221      112344


Q ss_pred             cccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       183 ~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      .+.+++...++.++..+.+  +++|+|+..|+......+++.++
T Consensus       179 gGqkqRvaiAraL~~~p~i--LLLDEPtsgLD~~~~~~l~~~L~  220 (320)
T PRK13631        179 GGQKRRVAIAGILAIQPEI--LIFDEPTAGLDPKGEHEMMQLIL  220 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence            5566777889999999999  89999999999888888887775

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=9.6e-19  Score=148.81  Aligned_cols=150  Identities=15%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------L  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------~  145 (234)
                      +++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+    |.+|+|.++|.++...      .
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~   82 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY   82 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence            67899999999888899999999999999999999999999999999998862    2789999999876421      0


Q ss_pred             cccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCce---------EEEecCcccHHHHHHHHHhC
Q 026725          146 NRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGVI---------CIACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll  196 (234)
                      ...+++.++       ...+++....             .+...+...++.         ....++.+.++....+++++
T Consensus        83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~  162 (250)
T PRK14262         83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA  162 (250)
T ss_pred             hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence            111111111       1112111100             011112222221         11223445566778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|+|+..|+......+++.+++
T Consensus       163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14262        163 VEPEV--ILLDEPTSALDPIATQRIEKLLEE  191 (250)
T ss_pred             CCCCE--EEEeCCccccCHHHHHHHHHHHHH
Confidence            99988  899999999988888888877764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2.8e-18  Score=147.30  Aligned_cols=152  Identities=18%  Similarity=0.149  Sum_probs=105.3

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----  144 (234)
                      .++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++..    |++|+|+++|+++...     
T Consensus         8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   87 (264)
T PRK14243          8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV   87 (264)
T ss_pred             ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence            3478999999999988899999999999999999999999999999999998752    3689999999876310     


Q ss_pred             -ccccCCCChh-------hHHHHHHHH-----------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026725          145 -LNRDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       145 -~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll  196 (234)
                       ....+++.++       ...+++...           ..+...+...+.         .....++.+.++....+++++
T Consensus        88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243         88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence             0011111111       111111100           001111121111         111234555667778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++......+++.+++
T Consensus       168 ~~p~l--llLDEPt~~LD~~~~~~l~~~L~~  196 (264)
T PRK14243        168 VQPEV--ILMDEPCSALDPISTLRIEELMHE  196 (264)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            99998  899999999998888888877764

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.78  E-value=9.1e-19  Score=149.46  Aligned_cols=148  Identities=18%  Similarity=0.155  Sum_probs=104.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccccc--cccC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHGL--NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~~~--~~~~  149 (234)
                      .++++|+++.| +..+++++||++.+||+++|+|+||||||||+++|+|+++ |    ++|+|+++|+++....  ...+
T Consensus         4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~~~~~~~~~i   81 (254)
T PRK10418          4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVAPCALRGRKI   81 (254)
T ss_pred             EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeeccccccccceE
Confidence            57889999999 5689999999999999999999999999999999999987 7    8999999998763210  0111


Q ss_pred             CCChhhH----------HHHHHH----------HHHHHHHHHhcCceE--------EEecCcccHHHHHHHHHhCCCCCc
Q 026725          150 SFKAEDR----------VENIRR----------IGEVAKLFADAGVIC--------IACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       150 ~~~~~~~----------~~~~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      ++.+++.          .+....          ...+...+...++..        ...++.+.++....+++++..+.+
T Consensus        82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  161 (254)
T PRK10418         82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF  161 (254)
T ss_pred             EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence            1111110          010000          011222233333221        123455666777889999999988


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..|+......+++.+++
T Consensus       162 --LlLDEPt~~LD~~~~~~l~~~L~~  185 (254)
T PRK10418        162 --IIADEPTTDLDVVAQARILDLLES  185 (254)
T ss_pred             --EEEeCCCcccCHHHHHHHHHHHHH
Confidence              899999999998888888777764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.9e-19  Score=155.98  Aligned_cols=149  Identities=15%  Similarity=0.180  Sum_probs=104.8

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCccccccc----c
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCRHGL----N  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~~~~----~  146 (234)
                      +++++|+++.|++  ..+++++||++.+||+++|+||||||||||+++|+|++. |.+   |+|.++|+++....    .
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcCCHHHHH
Confidence            6889999999964  469999999999999999999999999999999999998 776   89999998875311    0


Q ss_pred             ccCCCChhhH---------HHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCC
Q 026725          147 RDLSFKAEDR---------VENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       147 ~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ..+++.+++.         .+++...            ..+...+...++..     ...++.+.++....+++++..+.
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~  163 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK  163 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            1122222211         1111100            01111222223211     12334556667788999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|+|+..++....+.+++.+++
T Consensus       164 l--lllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        164 I--IILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             E--EEEECCcccCCHHHHHHHHHHHHH
Confidence            9  899999999988888877777653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2.9e-18  Score=146.93  Aligned_cols=153  Identities=17%  Similarity=0.103  Sum_probs=107.0

Q ss_pred             cCcccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc--
Q 026725           72 QNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG--  144 (234)
Q Consensus        72 ~~~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~--  144 (234)
                      +..+.++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |+     +|+|.++|+++...  
T Consensus         3 ~~~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~   81 (261)
T PRK14258          3 KLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRV   81 (261)
T ss_pred             cccceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhcccc
Confidence            34567899999999988889999999999999999999999999999999999987 64     79999999876310  


Q ss_pred             ----ccccCCCCh-------hhHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHH
Q 026725          145 ----LNRDLSFKA-------EDRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDA  191 (234)
Q Consensus       145 ----~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  191 (234)
                          ....+++.+       ....+++...             ..+...+...++.         ....++.+.++....
T Consensus        82 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l  161 (261)
T PRK14258         82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI  161 (261)
T ss_pred             chHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence                001111111       1111211110             0111112222211         112344556677788


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++.++..+.+  +++|||+..++....+.+++.+++
T Consensus       162 aral~~~p~v--llLDEP~~~LD~~~~~~l~~~l~~  195 (261)
T PRK14258        162 ARALAVKPKV--LLMDEPCFGLDPIASMKVESLIQS  195 (261)
T ss_pred             HHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999988  899999999988888888887764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.78  E-value=1.8e-18  Score=143.79  Aligned_cols=145  Identities=16%  Similarity=0.171  Sum_probs=100.9

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh-
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE-  154 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~-  154 (234)
                      +++|+++.|+.  .+.++||++++|++++|+||||||||||+++|+|+++ |.+|+|+++|+++....  ...+++.++ 
T Consensus         2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~   78 (213)
T TIGR01277         2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQE   78 (213)
T ss_pred             eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEecc
Confidence            57899999974  5689999999999999999999999999999999998 89999999998764211  111111111 


Q ss_pred             -------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          155 -------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       155 -------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                             ...+++...            ..+...+...++.     ....++.+.++....+++++..+.+  +++|+|+
T Consensus        79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt  156 (213)
T TIGR01277        79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI--LLLDEPF  156 (213)
T ss_pred             CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCC
Confidence                   111111100            0111222222221     1123455666777888999999988  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      ..++......+++.+++
T Consensus       157 ~~LD~~~~~~~~~~l~~  173 (213)
T TIGR01277       157 SALDPLLREEMLALVKQ  173 (213)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99988888888777654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.78  E-value=1.4e-18  Score=149.55  Aligned_cols=149  Identities=17%  Similarity=0.173  Sum_probs=103.8

Q ss_pred             cceeeceeeecC---------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-
Q 026725           76 VAKSTNILWHKN---------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-  145 (234)
Q Consensus        76 ~~~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-  145 (234)
                      +++++|+++.|+         ++.+++|+||++.+|++++|+||||||||||+++|+|++. |.+|+|.++|+++.... 
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccCh
Confidence            578999999997         4789999999999999999999999999999999999988 89999999998764210 


Q ss_pred             ------cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce------EEEecCcccHHHHH
Q 026725          146 ------NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI------CIACLISPYRKDRD  190 (234)
Q Consensus       146 ------~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  190 (234)
                            ...+++.+++.          .+.+..             ...+...+...++.      ....++.+.++...
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence                  01111111110          011100             00112222222221      11223455667778


Q ss_pred             HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++.++..+.+  +++|||+..|+....+.+++.+++
T Consensus       162 laral~~~p~l--llLDEPt~~LD~~~~~~~~~~l~~  196 (268)
T PRK10419        162 LARALAVEPKL--LILDEAVSNLDLVLQAGVIRLLKK  196 (268)
T ss_pred             HHHHHhcCCCE--EEEeCCCcccCHHHHHHHHHHHHH
Confidence            89999999998  899999999988777777776653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.78  E-value=2e-19  Score=168.24  Aligned_cols=149  Identities=17%  Similarity=0.158  Sum_probs=105.7

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|++++|++  .++++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.++.....    ..+
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i  398 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQI  398 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhhe
Confidence            5889999999975  369999999999999999999999999999999999998 999999999998753210    001


Q ss_pred             CCChhh-------HHHHHHH------------HH---HHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAED-------RVENIRR------------IG---EVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~-------~~~~~~~------------~~---~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++       .++++..            ..   .........  +.- .+    ..++.+.+++-..+|+++..+.
T Consensus       399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~  478 (529)
T TIGR02857       399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP  478 (529)
T ss_pred             EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence            111111       1111110            00   000111110  000 01    2245566778889999999998


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       479 i--lilDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       479 L--LLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             E--EEEeCcccccCHHHHHHHHHHHHH
Confidence            8  899999999999999988888875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=148.69  Aligned_cols=151  Identities=17%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--C--CccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--R--GKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p--~~G~i~~~g~~v~~~------  144 (234)
                      +.++++|+++.|++..+++++||++++||+++|+|+||||||||+|+|+|++++  |  .+|+|.++|+++...      
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR   85 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence            468899999999888899999999999999999999999999999999998872  1  489999999876421      


Q ss_pred             ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.++       ...+++...             ..+...+...++.         ....++.+.++....++++
T Consensus        86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  165 (259)
T PRK14260         86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL  165 (259)
T ss_pred             hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence            0011111111       111111100             0111222222221         1123445566677889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|+|+..++......+++.+++
T Consensus       166 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  195 (259)
T PRK14260        166 AIKPKV--LLMDEPCSALDPIATMKVEELIHS  195 (259)
T ss_pred             hcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888887764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=9.8e-19  Score=153.22  Aligned_cols=149  Identities=19%  Similarity=0.129  Sum_probs=103.0

Q ss_pred             cceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------
Q 026725           76 VAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------  144 (234)
                      +++++|+++.|++.     .+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++...      
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~   80 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEK   80 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccc
Confidence            36789999999743     59999999999999999999999999999999999998 8999999987654100      


Q ss_pred             ----------------------ccccCCCChhh---------HHHHHHH------------HHHHHHHHHhcCce-----
Q 026725          145 ----------------------LNRDLSFKAED---------RVENIRR------------IGEVAKLFADAGVI-----  176 (234)
Q Consensus       145 ----------------------~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----  176 (234)
                                            ....+++..++         ..+++..            ...+...+...++.     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                                  00112222221         1111110            00122222333321     


Q ss_pred             -EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          177 -CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       ....++.+.++....++.++..+.+  +++|||+..|+......+++.+++
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~l--LlLDEPt~~LD~~~~~~l~~~l~~  210 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDF--LVFDEPTAGLDPQGVKEILEIFDN  210 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence             1122345566677888999999998  899999999988888888877653

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.78  E-value=1.6e-19  Score=174.41  Aligned_cols=149  Identities=15%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      .++++|++++|+ +..+++|+||++++|+.++|+|+||||||||+++|+|++. |++|+|++||.++.....    ..++
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~  551 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFIN  551 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheE
Confidence            578999999996 4679999999999999999999999999999999999998 999999999988753110    0111


Q ss_pred             CChhh-------HHHHHH-------------HHHH---HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026725          151 FKAED-------RVENIR-------------RIGE---VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       151 ~~~~~-------~~~~~~-------------~~~~---~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +.+++       .++++.             ....   ........  +. ..+    ..++.+.+++...+|+++..+.
T Consensus       552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~  631 (708)
T TIGR01193       552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK  631 (708)
T ss_pred             EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            11111       011111             0001   11111111  11 111    1235566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       632 i--liLDE~Ts~LD~~te~~i~~~L~~  656 (708)
T TIGR01193       632 V--LILDESTSNLDTITEKKIVNNLLN  656 (708)
T ss_pred             E--EEEeCccccCCHHHHHHHHHHHHH
Confidence            9  899999999999888888888874

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.78  E-value=5.7e-19  Score=166.97  Aligned_cols=149  Identities=18%  Similarity=0.256  Sum_probs=104.8

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|++  .++++|+||++++|+.++|+|+||||||||+++|+|+++ |.+|+|+++|.++....    ...+
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i  419 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQV  419 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhc
Confidence            4889999999964  579999999999999999999999999999999999998 99999999998875311    0001


Q ss_pred             CCChhh-------HHHHHH-------------HHHH---HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCC
Q 026725          150 SFKAED-------RVENIR-------------RIGE---VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       150 ~~~~~~-------~~~~~~-------------~~~~---~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      ++.+++       .++++.             ....   ........  +. ..+    ..++.+.+++-..+|+++...
T Consensus       420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~  499 (582)
T PRK11176        420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS  499 (582)
T ss_pred             eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence            111111       011111             0000   01111111  11 111    123556677788999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||++.++....+.+++.+++
T Consensus       500 ~i--lilDEptsaLD~~t~~~i~~~l~~  525 (582)
T PRK11176        500 PI--LILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             CE--EEEECccccCCHHHHHHHHHHHHH
Confidence            98  899999999988888888877765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=147.71  Aligned_cols=151  Identities=15%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccC--CccEEEEcCccccccc-----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWR--GKLTYILDGDNCRHGL-----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p--~~G~i~~~g~~v~~~~-----  145 (234)
                      ++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+.  .+|  .+|+|.++|+++....     
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE   81 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence            3678999999999888999999999999999999999999999999999973  214  4899999998874210     


Q ss_pred             -cccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          146 -NRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       146 -~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                       ...+++.++       ...+++...             ..+...+...++.         ....++.+.++....++++
T Consensus        82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14245         82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM  161 (250)
T ss_pred             HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence             011121111       111111100             0111222222221         1123455566777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++....+.+++.+++
T Consensus       162 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  191 (250)
T PRK14245        162 AVSPSV--LLMDEPASALDPISTAKVEELIHE  191 (250)
T ss_pred             hcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            999998  899999999998888888887764

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.8e-18  Score=148.29  Aligned_cols=152  Identities=15%  Similarity=0.103  Sum_probs=107.9

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----  144 (234)
                      .+++.+++++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|+|.++|+++...     
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   85 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV   85 (261)
T ss_pred             CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence            4578889999999988999999999999999999999999999999999999872    2689999999886421     


Q ss_pred             -ccccCCCChh-------hHHHHHHHH-----------HHHHHHHHhcCceE---------EEecCcccHHHHHHHHHhC
Q 026725          145 -LNRDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGVIC---------IACLISPYRKDRDACRSML  196 (234)
Q Consensus       145 -~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ll  196 (234)
                       ....+++.++       ...+++...           ..+...+...++..         ...++.+.++....+++++
T Consensus        86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~  165 (261)
T PRK14263         86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA  165 (261)
T ss_pred             hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             0111121111       111222110           01222233333211         1224455667778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|+|+..++......+++.+++
T Consensus       166 ~~p~l--lllDEPtsgLD~~~~~~l~~~l~~  194 (261)
T PRK14263        166 TEPEV--LLLDEPCSALDPIATRRVEELMVE  194 (261)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            99988  899999999998888888888775

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.77  E-value=7.1e-19  Score=143.71  Aligned_cols=139  Identities=17%  Similarity=0.230  Sum_probs=95.3

Q ss_pred             cCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccccCCCChhh----
Q 026725           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLSFKAED----  155 (234)
Q Consensus        86 ~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~~~~~~~~~----  155 (234)
                      |++..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...      ....+++.+++    
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   80 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ   80 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence            356678999999999999999999999999999999999988 8999999999876311      00111221111    


Q ss_pred             -----HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          156 -----RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       156 -----~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                           ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  +++|||+..+
T Consensus        81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~L  158 (190)
T TIGR01166        81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV--LLLDEPTAGL  158 (190)
T ss_pred             cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccC
Confidence                 11111110            01112222222211     122345566677888999999988  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +....+.+++.+++
T Consensus       159 D~~~~~~~~~~l~~  172 (190)
T TIGR01166       159 DPAGREQMLAILRR  172 (190)
T ss_pred             CHHHHHHHHHHHHH
Confidence            98888888777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.77  E-value=8.1e-20  Score=144.74  Aligned_cols=130  Identities=19%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026725           76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      +++++++++..+    ...+|++|++.|++||.++|+||||||||||+-.++|+-. |++|+|++.|+++..       +
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-~ssGeV~l~G~~L~~-------l   77 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHK-------L   77 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-CCCceEEEcCcchhh-------c
Confidence            566677776654    4679999999999999999999999999999999999877 999999999999974       6


Q ss_pred             ChhhHHHHHHHHHHHHHHHHhcCceEEEec------------------------------------------CcccHHHH
Q 026725          152 KAEDRVENIRRIGEVAKLFADAGVICIACL------------------------------------------ISPYRKDR  189 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~  189 (234)
                      ..+.+...+++  .++.+||.+.+.+....                                          +.+.+++.
T Consensus        78 dEd~rA~~R~~--~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV  155 (228)
T COG4181          78 DEDARAALRAR--HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV  155 (228)
T ss_pred             CHHHHHHhhcc--ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH
Confidence            76767665555  67778887766443211                                          11223444


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      .+++++...+.+  ++-|+|+-.|+...
T Consensus       156 AiARAfa~~P~v--LfADEPTGNLD~~T  181 (228)
T COG4181         156 ALARAFAGRPDV--LFADEPTGNLDRAT  181 (228)
T ss_pred             HHHHHhcCCCCE--EeccCCCCCcchhH
Confidence            667777777777  67788888775433

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.8e-18  Score=147.35  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------L  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------~  145 (234)
                      .++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|+++. |   ++|+|+++|+++...      .
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   83 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI   83 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence            57899999999888899999999999999999999999999999999998741 2   589999999887421      0


Q ss_pred             cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          146 NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                      ...+++.++        ...+++...             ..+...+...++.         ....++.+.++....++.+
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  163 (252)
T PRK14256         84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI  163 (252)
T ss_pred             hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence            111111111        111111100             0111122222221         1122445566677888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|+|+..++......+++.+++
T Consensus       164 ~~~p~l--lllDEP~~gLD~~~~~~l~~~l~~  193 (252)
T PRK14256        164 AVKPEV--ILMDEPASALDPISTLKIEELIEE  193 (252)
T ss_pred             hcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888777664

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=8.5e-19  Score=164.06  Aligned_cols=146  Identities=18%  Similarity=0.207  Sum_probs=101.7

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      .++++|++|.|..   +++++|+||+|++||+++|+|||||||||++.+|.+++. |++|+|.+||.|++..-    +..
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~  543 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRK  543 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHH
Confidence            6899999999964   469999999999999999999999999999999999999 99999999999987421    011


Q ss_pred             CCCChhhH-------H------------HHHHHHHHHHH---HHHhcC--c-eEE----EecCcccHHHHHHHHHhCCCC
Q 026725          149 LSFKAEDR-------V------------ENIRRIGEVAK---LFADAG--V-ICI----ACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       149 ~~~~~~~~-------~------------~~~~~~~~~~~---~~~~~~--~-~~~----~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      +++..++.       .            +.+...++.+.   ....+.  . ..+    ..++.+.+++-++||+++..+
T Consensus       544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P  623 (716)
T KOG0058|consen  544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP  623 (716)
T ss_pred             eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence            11111110       0            11111111111   011110  0 011    223556788889999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKL  224 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~  224 (234)
                      .+  +++||.++.|+.......-+.
T Consensus       624 ~V--LILDEATSALDaeSE~lVq~a  646 (716)
T KOG0058|consen  624 RV--LILDEATSALDAESEYLVQEA  646 (716)
T ss_pred             CE--EEEechhhhcchhhHHHHHHH
Confidence            99  899999999977665444333

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.4e-18  Score=148.56  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=105.8

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~-----  144 (234)
                      .++++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.. |   .+|+|.++|+++...     
T Consensus        18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~   97 (274)
T PRK14265         18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV   97 (274)
T ss_pred             CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence            3489999999999988899999999999999999999999999999999998752 2   589999999876320     


Q ss_pred             -ccccCCCChhh-------HHHHHHHHH-----------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026725          145 -LNRDLSFKAED-------RVENIRRIG-----------EVAKLFADAGV---------ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       145 -~~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll  196 (234)
                       ....+++.+++       ..+++....           .+...+...++         .....++.+.++....+++++
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265         98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence             01111121111       111111100           01111111111         111223455667778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..|+......+++.+++
T Consensus       178 ~~p~l--llLDEPt~~LD~~~~~~l~~~L~~  206 (274)
T PRK14265        178 MKPDV--LLMDEPCSALDPISTRQVEELCLE  206 (274)
T ss_pred             hCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            99998  899999999998888888887764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.8e-18  Score=145.24  Aligned_cols=151  Identities=13%  Similarity=0.136  Sum_probs=104.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|++++|++..+++++||++.+||+++|+|+||||||||+++|+|++++    |.+|+|.++|+++...      
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~   82 (251)
T PRK14251          3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE   82 (251)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence            367899999999988999999999999999999999999999999999998852    3689999999876320      


Q ss_pred             ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++..+       ...+++...             ..+...+...++.         ....++.+.++....++++
T Consensus        83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral  162 (251)
T PRK14251         83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL  162 (251)
T ss_pred             hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence            0111111111       111111100             0111122222221         1122344556677888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..|+......+++.+++
T Consensus       163 ~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  192 (251)
T PRK14251        163 AVRPKV--VLLDEPTSALDPISSSEIEETLME  192 (251)
T ss_pred             hcCCCE--EEecCCCccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888777764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.7e-18  Score=147.37  Aligned_cols=149  Identities=16%  Similarity=0.179  Sum_probs=103.7

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc------
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~------  144 (234)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++ |.     +|+|+++|+++...      
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-LTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceeEEECCEEcccCccCHHH
Confidence            5788999999998899999999999999999999999999999999999986 43     79999999876420      


Q ss_pred             ccccCCCChh--------hHHHHHHHHH-------------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHH
Q 026725          145 LNRDLSFKAE--------DRVENIRRIG-------------EVAKLFADAGV---------ICIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 ~~~~~~~~~~--------~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  194 (234)
                      ....+++.++        ...+++....             .....+.....         .....++.+.++....++.
T Consensus        83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14272         83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA  162 (252)
T ss_pred             hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence            0011111111        1111111100             00011111111         1122345556677788899


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|+|+..++....+.+++.+++
T Consensus       163 l~~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  193 (252)
T PRK14272        163 LAVEPEI--LLMDEPTSALDPASTARIEDLMTD  193 (252)
T ss_pred             HhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999988  899999999988888888887764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.7e-18  Score=150.42  Aligned_cols=152  Identities=17%  Similarity=0.166  Sum_probs=105.5

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc-----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG-----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~-----  144 (234)
                      .++++++|+++.|++..+++|+||++.+|++++|+|+||||||||+++|+|++.  +  |.+|+|.++|+++...     
T Consensus        37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~  116 (286)
T PRK14275         37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV  116 (286)
T ss_pred             ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence            457899999999988889999999999999999999999999999999999753  2  3899999999876421     


Q ss_pred             -ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHH
Q 026725          145 -LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 -~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  194 (234)
                       ....+++.+++       ..+++...             ..+...+...++.         ....++.+.++....+++
T Consensus       117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra  196 (286)
T PRK14275        117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVART  196 (286)
T ss_pred             HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHH
Confidence             01111121111       11111100             0111112222211         112344556677788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..|+......+++.+++
T Consensus       197 L~~~p~l--llLDEPt~gLD~~~~~~l~~~L~~  227 (286)
T PRK14275        197 LAVEPEI--LLLDEPTSALDPKATAKIEDLIQE  227 (286)
T ss_pred             HhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999988  899999999988888888887764

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3e-18  Score=147.18  Aligned_cols=151  Identities=15%  Similarity=0.161  Sum_probs=104.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCccccc---c---
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH---G---  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~---~---  144 (234)
                      ..++++|+++.|++..+++++||++++||+++|+|+||||||||+++|+|++.+ |   ++|+|.++|+++..   .   
T Consensus        15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~   94 (265)
T PRK14252         15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP   94 (265)
T ss_pred             ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence            468899999999888899999999999999999999999999999999998862 1   68999999876531   0   


Q ss_pred             --ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026725          145 --LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR  193 (234)
Q Consensus       145 --~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  193 (234)
                        ....+++.++       ...+++...             ..+...+...++.         ....++.+.++....++
T Consensus        95 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  174 (265)
T PRK14252         95 IEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR  174 (265)
T ss_pred             HHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence              0111222221       111222110             0111122222211         11223445566778889


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++..+.+  +++|+|+..++....+.+++.+++
T Consensus       175 al~~~p~l--lllDEPt~gLD~~~~~~l~~~l~~  206 (265)
T PRK14252        175 ALATDPEI--LLFDEPTSALDPIATASIEELISD  206 (265)
T ss_pred             HHHcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999988  899999999988888887777664

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=1.4e-18  Score=161.98  Aligned_cols=151  Identities=19%  Similarity=0.204  Sum_probs=107.0

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEEEEcCccccccc-----ccc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGL-----NRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i~~~g~~v~~~~-----~~~  148 (234)
                      ++++++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++++ |++|+|+++|.++....     ...
T Consensus         4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (506)
T PRK13549          4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG   83 (506)
T ss_pred             ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence            468999999999988899999999999999999999999999999999999872 27999999998764210     011


Q ss_pred             CCCChhh--------HHHHHHH---------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC
Q 026725          149 LSFKAED--------RVENIRR---------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +++.+++        ..+++..               ...+...+...++.     ....++.+.++....+++++..+.
T Consensus        84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  163 (506)
T PRK13549         84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR  163 (506)
T ss_pred             eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            1111111        0011000               00122223333321     123345566777889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.|+......+++.+++
T Consensus       164 l--llLDEPt~~LD~~~~~~l~~~l~~  188 (506)
T PRK13549        164 L--LILDEPTASLTESETAVLLDIIRD  188 (506)
T ss_pred             E--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            8  899999999988888888776653

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=5.6e-18  Score=146.44  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=106.6

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL----  145 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~----  145 (234)
                      .++++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|++++    |.+|+|.++|.++....    
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            3478999999999988999999999999999999999999999999999999872    36899999998764210    


Q ss_pred             -cccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCceE---------EEecCcccHHHHHHHHHh
Q 026725          146 -NRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGVIC---------IACLISPYRKDRDACRSM  195 (234)
Q Consensus       146 -~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l  195 (234)
                       ...+++.++       ...+++....             .+...+...++..         ...++.+.++....++.+
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral  178 (276)
T PRK14271         99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL  178 (276)
T ss_pred             HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence             111112111       1112111100             0111122222211         123455566777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|+|+..++....+.+++.+++
T Consensus       179 ~~~p~l--llLDEPt~~LD~~~~~~l~~~L~~  208 (276)
T PRK14271        179 AVNPEV--LLLDEPTSALDPTTTEKIEEFIRS  208 (276)
T ss_pred             hcCCCE--EEEcCCcccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888877764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.77  E-value=4.9e-19  Score=167.81  Aligned_cols=149  Identities=16%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      .++++|+++.|++ ..+++|+||++++||.++|+|+||||||||+++|+|++. |++|+|++||.++.....    ..++
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~  418 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVA  418 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheE
Confidence            4789999999964 579999999999999999999999999999999999998 999999999998763110    0111


Q ss_pred             CChhh-------HHHHHHH-----------HHH---HHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCCce
Q 026725          151 FKAED-------RVENIRR-----------IGE---VAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       151 ~~~~~-------~~~~~~~-----------~~~---~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +.+++       .++++..           ...   ........  +.. .+    ..++.+.+++-..+|+++....+ 
T Consensus       419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i-  497 (592)
T PRK10790        419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI-  497 (592)
T ss_pred             EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE-
Confidence            11111       1111110           000   00111110  110 01    12345667788899999999988 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||++.++....+.+++.+++
T Consensus       498 -lllDEpts~LD~~t~~~i~~~l~~  521 (592)
T PRK10790        498 -LILDEATANIDSGTEQAIQQALAA  521 (592)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHHH
Confidence             899999999998888888877764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.4e-18  Score=148.14  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=104.3

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|++.. |   .+|+|.++|+++...      
T Consensus         5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   84 (253)
T PRK14261          5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA   84 (253)
T ss_pred             ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence            478899999999988999999999999999999999999999999999998651 2   479999999886431      


Q ss_pred             ccccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.+++       ..+++...             ..+...+...++.         ....++.+.++....++.+
T Consensus        85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  164 (253)
T PRK14261         85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL  164 (253)
T ss_pred             hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence            00111111111       11111100             0111111212211         1123345566677888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++....+.+++.+++
T Consensus       165 ~~~p~l--llLDEP~~gLD~~~~~~l~~~l~~  194 (253)
T PRK14261        165 AVNPEV--ILMDEPCSALDPIATAKIEDLIED  194 (253)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999988  899999999988888888777764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=5.5e-19  Score=152.75  Aligned_cols=148  Identities=14%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      +++++|+++.|++   ..+++++||++.+||+++|+|+||||||||+++|+|+++ |.+|+|+++|+++....    ...
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcc
Confidence            5789999999974   358999999999999999999999999999999999998 99999999998864311    111


Q ss_pred             CCCChhhH---------HHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          149 LSFKAEDR---------VENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       149 ~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +++.+++.         .+++...            ..+...+...++.     ....++.+.++....++.++..+.+ 
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l-  161 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI-  161 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            22222211         1111100            0111112222221     1123345566777889999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|+|+..++....+.+++.++
T Consensus       162 -lllDEPt~~LD~~~~~~l~~~l~  184 (277)
T PRK13642        162 -IILDESTSMLDPTGRQEIMRVIH  184 (277)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHH
Confidence             89999999999888888888765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.7e-18  Score=144.66  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=104.4

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cC---CccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p---~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|+.. .|   .+|+|.++|+++...      
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14239          4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD   83 (252)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence            36889999999988889999999999999999999999999999999999843 25   489999999876321      


Q ss_pred             ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.++       ...+++...             ..+...+...+.         .....++.+.++....++++
T Consensus        84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14239         84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL  163 (252)
T ss_pred             hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            0111111111       111211110             001111112221         11123445566777888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..++......+++.+++
T Consensus       164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14239        164 ATSPKI--ILLDEPTSALDPISAGKIEETLLG  193 (252)
T ss_pred             hcCCCE--EEEcCCccccCHHHHHHHHHHHHH
Confidence            999988  899999999988888888887764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.9e-18  Score=144.44  Aligned_cols=150  Identities=17%  Similarity=0.167  Sum_probs=103.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C---CccEEEEcCcccccc------c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRHG------L  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p---~~G~i~~~g~~v~~~------~  145 (234)
                      .++++|+++.|++..+++|+||++++||+++|+|+||||||||+++|+|+++. |   .+|+|+++|+++...      .
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   82 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL   82 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence            46789999999888899999999999999999999999999999999998752 2   589999999876420      0


Q ss_pred             cccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026725          146 NRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGV---------ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll  196 (234)
                      ...+++.++       ...+++....             .+...+...++         .....++.+.++....+++++
T Consensus        83 ~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  162 (250)
T PRK14240         83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA  162 (250)
T ss_pred             hccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence            111111111       1111111100             01111111211         111234556677778899999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++......+++.+++
T Consensus       163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14240        163 VEPEV--LLMDEPTSALDPISTLKIEELIQE  191 (250)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            99988  899999999988888888777654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.77  E-value=3.3e-19  Score=171.82  Aligned_cols=149  Identities=23%  Similarity=0.296  Sum_probs=105.4

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|++++|++  ..+++|+||++++|+.++|+|+||||||||+++|+|++. |++|+|.+||.++.....    ..+
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i  541 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNI  541 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhcc
Confidence            5889999999963  469999999999999999999999999999999999998 999999999988763110    011


Q ss_pred             CCChhhH-------HHHHH------------HHHH---HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAEDR-------VENIR------------RIGE---VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~~-------~~~~~------------~~~~---~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++.       ++++.            ....   ........  +. ..+    ..++.+.+++-..+|+++..+.
T Consensus       542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~  621 (694)
T TIGR03375       542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP  621 (694)
T ss_pred             EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            1211110       01110            0000   00111110  11 011    1235566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       622 i--liLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       622 I--LLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             E--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9  899999999999888888887764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=8.3e-19  Score=159.56  Aligned_cols=148  Identities=14%  Similarity=0.203  Sum_probs=106.7

Q ss_pred             cceeeceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           76 VAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      .++++|+++.|+..+ +|+++||+|++||.++|+|+|||||||++|+|.+++.  .+|+|++||+++....    ...++
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig  428 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIG  428 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhhee
Confidence            489999999999776 9999999999999999999999999999999999886  7899999999986421    11234


Q ss_pred             CChhhHH--------------------HHHHHH--HHHHHHHHhc--Cce----E-EEecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAEDRV--------------------ENIRRI--GEVAKLFADA--GVI----C-IACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~~~--------------------~~~~~~--~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.||+-.                    +.....  ..+...+..+  +..    . -..++.+.++....+|++++...+
T Consensus       429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I  508 (591)
T KOG0057|consen  429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI  508 (591)
T ss_pred             EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence            4443321                    000000  0011111111  000    0 012345667788899999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.|+......+.+.++.
T Consensus       509 --l~~DEaTS~LD~~TE~~i~~~i~~  532 (591)
T KOG0057|consen  509 --LLLDEATSALDSETEREILDMIMD  532 (591)
T ss_pred             --EEecCcccccchhhHHHHHHHHHH
Confidence              899999999998888888887765

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.2e-18  Score=147.54  Aligned_cols=151  Identities=19%  Similarity=0.139  Sum_probs=105.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+++  +  |++|+|.++|.++...      
T Consensus        23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~  102 (271)
T PRK14238         23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE  102 (271)
T ss_pred             eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence            47899999999988889999999999999999999999999999999999875  2  4889999999876320      


Q ss_pred             ccccCCCChh-------hHHHHHHHHH-------------HHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRIG-------------EVAKLFADAGV---------ICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.++       ...+++....             .+...+...+.         .....++.+.++....++.+
T Consensus       103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL  182 (271)
T PRK14238        103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL  182 (271)
T ss_pred             HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            0111111111       1112211100             00111111110         11123445566777888999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|+|+..++....+.+++.+++
T Consensus       183 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  212 (271)
T PRK14238        183 AIEPDV--ILMDEPTSALDPISTLKVEELVQE  212 (271)
T ss_pred             HcCCCE--EEEeCCCCcCCHHHHHHHHHHHHH
Confidence            999988  899999999998888888877654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.8e-18  Score=144.65  Aligned_cols=150  Identities=19%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-----ccEEEEcCcccccc-----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG-----  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-----~G~i~~~g~~v~~~-----  144 (234)
                      +.++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|+++ |.     +|+|.++|+++...     
T Consensus         3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~   81 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVV   81 (251)
T ss_pred             ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChH
Confidence            36788999999988889999999999999999999999999999999999987 65     69999999876421     


Q ss_pred             -ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHH
Q 026725          145 -LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRS  194 (234)
Q Consensus       145 -~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  194 (234)
                       ....+++.++       ...+++...             ..+.......++         .....++.+.++....+++
T Consensus        82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara  161 (251)
T PRK14249         82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV  161 (251)
T ss_pred             HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence             0111111111       111111110             001111111121         1112234556677788999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|+|+..|+......+++.+++
T Consensus       162 l~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  192 (251)
T PRK14249        162 LAIEPEV--ILMDEPCSALDPVSTMRIEELMQE  192 (251)
T ss_pred             HhcCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999988  899999999988888887777764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2e-18  Score=160.68  Aligned_cols=150  Identities=21%  Similarity=0.211  Sum_probs=107.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++....     ...+
T Consensus         3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCE
Confidence            46889999999998889999999999999999999999999999999999988 89999999998764210     0111


Q ss_pred             CCChhh--------HHHHHHH---------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          150 SFKAED--------RVENIRR---------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      ++.+++        ..+++..               ...+...+...++.     ....++.+.++....++.++..+.+
T Consensus        82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l  161 (501)
T PRK11288         82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV  161 (501)
T ss_pred             EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            111111        0011100               00122223333321     1233455667778889999999998


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..|+......+++.+++
T Consensus       162 --llLDEPt~~LD~~~~~~l~~~l~~  185 (501)
T PRK11288        162 --IAFDEPTSSLSAREIEQLFRVIRE  185 (501)
T ss_pred             --EEEcCCCCCCCHHHHHHHHHHHHH
Confidence              899999999998888888877764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.3e-18  Score=153.66  Aligned_cols=145  Identities=20%  Similarity=0.204  Sum_probs=101.3

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------cccc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRD  148 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------~~~~  148 (234)
                      +++ |++++|+++.+  ++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...        ....
T Consensus         2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~   77 (352)
T PRK11144          2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRR   77 (352)
T ss_pred             eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCC
Confidence            455 89999987543  8999999999999999999999999999999988 8999999999876421        0111


Q ss_pred             CCCChhh--------HHHHHHHH------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          149 LSFKAED--------RVENIRRI------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      +++..++        ..+++.+.      ..+..++...++..     ...++.+.+++...+++++..+.+  +++|||
T Consensus        78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--lLLDEP  155 (352)
T PRK11144         78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL--LLMDEP  155 (352)
T ss_pred             EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence            1121111        11221110      11222233333321     133455667778899999999998  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..|+......+++.+++
T Consensus       156 ts~LD~~~~~~l~~~L~~  173 (352)
T PRK11144        156 LASLDLPRKRELLPYLER  173 (352)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999988888877776653

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.4e-18  Score=138.26  Aligned_cols=150  Identities=19%  Similarity=0.164  Sum_probs=103.0

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc-----cc----
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-----HG----  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~-----~~----  144 (234)
                      .|++++.++++.|+.....+|+||++.+||+++|+|+||||||||++||++.+. |+.|+|.+..++-.     ..    
T Consensus         4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHH
Confidence            368999999999999999999999999999999999999999999999999998 99999988643211     00    


Q ss_pred             ----ccccCCCChhhHH----------------------HHHHHHHHHHH-HHHhcC----ce--EEEecCcccHHHHHH
Q 026725          145 ----LNRDLSFKAEDRV----------------------ENIRRIGEVAK-LFADAG----VI--CIACLISPYRKDRDA  191 (234)
Q Consensus       145 ----~~~~~~~~~~~~~----------------------~~~~~~~~~~~-~~~~~~----~~--~~~~~~~~~~~~~~~  191 (234)
                          ..-+|++..+..+                      ++++.+...+. .++.-.    ..  ....|+.+.+++.++
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi  162 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence                0001222111100                      11221111111 111100    00  013355667788899


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++.+...+.+  +++|+|+-.++-.....|.+..+
T Consensus       163 ARnLVt~PrL--vfMDEPTGGLDVSVQARLLDllr  195 (258)
T COG4107         163 ARNLVTRPRL--VFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             HHHhccCCce--EEecCCCCCcchhhHHHHHHHHH
Confidence            9999999999  89999999997766666666554

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=7.5e-18  Score=143.25  Aligned_cols=150  Identities=19%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc-----cc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----LN  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~-----~~  146 (234)
                      +++++|+++.|++..+++++||++++||+++|+||||||||||+++|+|++++    |.+|+|+++|.++...     ..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   82 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR   82 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence            57889999999988899999999999999999999999999999999998872    2589999999876310     00


Q ss_pred             ccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHHHhCC
Q 026725          147 RDLSFKAED-------RVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       147 ~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ll~  197 (234)
                      ..+++.+++       ..+++...             ..+.......++.         ....++.+.++....+++++.
T Consensus        83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  162 (249)
T PRK14253         83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM  162 (249)
T ss_pred             hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence            111111111       11111110             0011111111111         112344556677788999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..++......+++.+++
T Consensus       163 ~p~l--lllDEP~~~LD~~~~~~l~~~l~~  190 (249)
T PRK14253        163 EPDV--ILMDEPTSALDPIATHKIEELMEE  190 (249)
T ss_pred             CCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            9988  899999999988888887777664

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=7.8e-18  Score=143.39  Aligned_cols=151  Identities=16%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cC---CccEEEEcCcccccc------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRHG------  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p---~~G~i~~~g~~v~~~------  144 (234)
                      ++++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|+++ .|   .+|+|.++|+++...      
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14255          4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ   83 (252)
T ss_pred             ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence            46889999999998889999999999999999999999999999999999864 13   489999999876420      


Q ss_pred             ccccCCCChh-------hHHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHh
Q 026725          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l  195 (234)
                      ....+++.++       ...+++...             ..+...+...+.         .....++.+.++....++.+
T Consensus        84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral  163 (252)
T PRK14255         84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL  163 (252)
T ss_pred             hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence            0011111111       111111110             001111111111         11123345566777889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..+.+  +++|||+..|+....+.+++.+++
T Consensus       164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14255        164 AVKPDV--ILLDEPTSALDPISSTQIENMLLE  193 (252)
T ss_pred             hcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            999998  899999999998888888877764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.76  E-value=3.2e-18  Score=141.34  Aligned_cols=143  Identities=19%  Similarity=0.187  Sum_probs=95.0

Q ss_pred             ceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----
Q 026725           77 AKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----  147 (234)
Q Consensus        77 ~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----  147 (234)
                      ++++|+++.|++.     .+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|. +......    
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~-i~~~~q~~~l~   78 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGS-IAYVSQEPWIQ   78 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCE-EEEEecCchhc
Confidence            3578999999764     69999999999999999999999999999999999988 99999999982 2100000    


Q ss_pred             ------cCCC----ChhhHHHHHHHHHHHHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          148 ------DLSF----KAEDRVENIRRIGEVAKLFADA--GVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       148 ------~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                            .+.+    ......+....+ .....+...  +..     ....++.+.++....++.++..+.+  +++|+|+
T Consensus        79 ~~t~~enl~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l--lllDEP~  155 (204)
T cd03250          79 NGTIRENILFGKPFDEERYEKVIKAC-ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI--YLLDDPL  155 (204)
T ss_pred             cCcHHHHhccCCCcCHHHHHHHHHHc-CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcc
Confidence                  0001    000000000000 000111100  000     1122445566777889999999998  8999999


Q ss_pred             hhhhhcchhhHHHH
Q 026725          211 QVCEARDPKGLYKL  224 (234)
Q Consensus       211 ~~l~~R~~~~l~~~  224 (234)
                      ..|+....+.+++.
T Consensus       156 ~~LD~~~~~~l~~~  169 (204)
T cd03250         156 SAVDAHVGRHIFEN  169 (204)
T ss_pred             ccCCHHHHHHHHHH
Confidence            99988777777763

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=9.1e-18  Score=141.35  Aligned_cols=146  Identities=21%  Similarity=0.266  Sum_probs=100.6

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~  154 (234)
                      ++++|+++.|++..  .++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|+++....  ...+++.++
T Consensus         2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q   78 (232)
T PRK10771          2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQ   78 (232)
T ss_pred             eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEec
Confidence            57899999997644  39999999999999999999999999999999988 89999999998764211  011111111


Q ss_pred             --------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 --------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 --------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                              ...+++...            ..+...+...++.     ....++.+.++....+++++..+.+  +++|||
T Consensus        79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEP  156 (232)
T PRK10771         79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI--LLLDEP  156 (232)
T ss_pred             ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCC
Confidence                    111111100            0111122222221     1123455666777888999999988  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++....+.+++.+++
T Consensus       157 ~~gLD~~~~~~~~~~l~~  174 (232)
T PRK10771        157 FSALDPALRQEMLTLVSQ  174 (232)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999988888777776653

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.1e-18  Score=156.71  Aligned_cols=140  Identities=21%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             cceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026725           76 VAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~  153 (234)
                      .++++|++++|.+.  ++++|+||++.+||.++|+|+||||||||+..|+|.+. |++|+|.++|.++..       +++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~-------l~~  407 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIAS-------LDE  407 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhh-------CCh
Confidence            68999999999765  49999999999999999999999999999999999998 999999999998874       444


Q ss_pred             hhHHHHHHHHHHHHHHHH------------------------hcCc-----------e-EE----EecCcccHHHHHHHH
Q 026725          154 EDRVENIRRIGEVAKLFA------------------------DAGV-----------I-CI----ACLISPYRKDRDACR  193 (234)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~------------------------~~~~-----------~-~~----~~~~~~~~~~~~~~~  193 (234)
                      ++.++.+..+.|-..+|.                        ..++           . .+    ..++.+.+++...+|
T Consensus       408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR  487 (573)
T COG4987         408 QALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR  487 (573)
T ss_pred             hhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence            333332222222111111                        1111           0 00    112345566678899


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      .+++...+  +++|||++.|+.-....+.+.+
T Consensus       488 ~LL~dapl--~lLDEPTegLD~~TE~~vL~ll  517 (573)
T COG4987         488 ALLHDAPL--WLLDEPTEGLDPITERQVLALL  517 (573)
T ss_pred             HHHcCCCe--EEecCCcccCChhhHHHHHHHH
Confidence            99998877  8999999999877766655544

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.76  E-value=7.1e-19  Score=166.21  Aligned_cols=150  Identities=17%  Similarity=0.223  Sum_probs=105.8

Q ss_pred             ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026725           75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~  148 (234)
                      ..++++|++++|++  ..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+|+++|.++.....    ..
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhh
Confidence            35889999999964  469999999999999999999999999999999999998 999999999998764110    01


Q ss_pred             CCCChhh-------HHHHHHHH------HHHHHHHHhcCce-----------EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          149 LSFKAED-------RVENIRRI------GEVAKLFADAGVI-----------CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       149 ~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +++.+++       .++++...      .++.......+..           .+    ..++.+.+++-..+|+++..+.
T Consensus       416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~  495 (574)
T PRK11160        416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP  495 (574)
T ss_pred             eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            1121111       11111100      0111111111110           00    1234556777789999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       496 i--lilDE~ts~lD~~t~~~i~~~l~~  520 (574)
T PRK11160        496 L--LLLDEPTEGLDAETERQILELLAE  520 (574)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            8  899999999999888888887764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=7.2e-18  Score=144.31  Aligned_cols=151  Identities=18%  Similarity=0.180  Sum_probs=103.2

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC------ccccccc--
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG------DNCRHGL--  145 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g------~~v~~~~--  145 (234)
                      .++++++|++++|++..+++|+||++.+||+++|+|+||||||||+++|+|++. |.+|+|.++|      +++....  
T Consensus         8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246          8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHH
Confidence            468999999999999999999999999999999999999999999999999988 8886665554      4442100  


Q ss_pred             --cccCCCChh--------hHHHHHHHH-------------HHHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026725          146 --NRDLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVI---------CIACLISPYRKDRDACR  193 (234)
Q Consensus       146 --~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  193 (234)
                        ...+++.++        ...+++...             ..+...+..+++.         ....++.+.++....++
T Consensus        87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  166 (257)
T PRK14246         87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR  166 (257)
T ss_pred             HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence              001111111        111111100             0111222223321         11223445667778899


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++..+.+  +++|+|+..|+....+.+++.+++
T Consensus       167 al~~~P~l--lllDEPt~~LD~~~~~~l~~~l~~  198 (257)
T PRK14246        167 ALALKPKV--LLMDEPTSMIDIVNSQAIEKLITE  198 (257)
T ss_pred             HHHcCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999998  899999999988888888877763

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=4.3e-18  Score=149.16  Aligned_cols=151  Identities=17%  Similarity=0.113  Sum_probs=105.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCccccccc-----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHGL-----  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~~-----  145 (234)
                      ++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++++    |.+|+|+++|.++....     
T Consensus        44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~  123 (305)
T PRK14264         44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE  123 (305)
T ss_pred             ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence            468899999999988999999999999999999999999999999999998752    57999999998764210     


Q ss_pred             -cccCCCChhh-------HHHHHHHH-------------------------HHHHHHHHhcCc---------eEEEecCc
Q 026725          146 -NRDLSFKAED-------RVENIRRI-------------------------GEVAKLFADAGV---------ICIACLIS  183 (234)
Q Consensus       146 -~~~~~~~~~~-------~~~~~~~~-------------------------~~~~~~~~~~~~---------~~~~~~~~  183 (234)
                       ...+++.+++       ..+++...                         ..+...+...++         .....++.
T Consensus       124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  203 (305)
T PRK14264        124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG  203 (305)
T ss_pred             HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence             0112222211       11111100                         001111111111         01123445


Q ss_pred             ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.++....+++++..+.+  +++|+|+..|+......+++.+++
T Consensus       204 Gq~qrv~LAraL~~~p~l--LLLDEPtsgLD~~~~~~l~~~L~~  245 (305)
T PRK14264        204 GQQQRLCIARCLAVDPEV--ILMDEPASALDPIATSKIEDLIEE  245 (305)
T ss_pred             HHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            566777888999999988  899999999988888888877764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.76  E-value=4.4e-19  Score=167.94  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=103.1

Q ss_pred             cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      -++++|+++.| ++.++++|+||++++|+.++|+|+||||||||+++|+|++  |.+|+|.++|.++.....    ..++
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~  426 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLS  426 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheE
Confidence            48899999655 5678999999999999999999999999999999999988  578999999988753110    0011


Q ss_pred             C-----------------------ChhhHHHHHHHHHHHHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026725          151 F-----------------------KAEDRVENIRRIGEVAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       151 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +                       +.++..+..+.. .........  +. ..+    ..++.+.+++-..+|+++..+.
T Consensus       427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a-~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~  505 (588)
T PRK11174        427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENA-WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ  505 (588)
T ss_pred             EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHh-CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            1                       111111111110 111111111  11 111    2245567788899999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       506 I--liLDE~TSaLD~~te~~i~~~l~~  530 (588)
T PRK11174        506 L--LLLDEPTASLDAHSEQLVMQALNA  530 (588)
T ss_pred             E--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            9  899999999999888888877764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.4e-18  Score=139.42  Aligned_cols=142  Identities=17%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---c-----
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---R-----  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~-----  147 (234)
                      .++.+|++...++.+++.++||++.+||++.|.||||||||||+|+|+|+++ |++|+|+++|..+.....   .     
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yL   80 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYL   80 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHh
Confidence            3566788999999999999999999999999999999999999999999999 999999999887754221   0     


Q ss_pred             --cCCCChh-hHHHHHHHHHHH---------HHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          148 --DLSFKAE-DRVENIRRIGEV---------AKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       148 --~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                        ..++..+ ...+++++...+         .......++.     ++..++.+.+++...++-++....+  +++|||+
T Consensus        81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL--WiLDEP~  158 (209)
T COG4133          81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL--WILDEPF  158 (209)
T ss_pred             hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc--eeecCcc
Confidence              0112111 112333322111         1111222221     2223345566667788888888888  8999999


Q ss_pred             hhhhhcchhh
Q 026725          211 QVCEARDPKG  220 (234)
Q Consensus       211 ~~l~~R~~~~  220 (234)
                      ..+++.....
T Consensus       159 taLDk~g~a~  168 (209)
T COG4133         159 TALDKEGVAL  168 (209)
T ss_pred             cccCHHHHHH
Confidence            9997665443

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.76  E-value=7.2e-19  Score=165.88  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=106.9

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc--
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD--  148 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~--  148 (234)
                      -++++|+++.|+ +.++++|+||++++||.++|+||||||||||++.|+|++. |.+|+|++||.|++....    ..  
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~  406 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIG  406 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhcc
Confidence            488999999998 6899999999999999999999999999999999999998 899999999998864210    00  


Q ss_pred             ------------------CC---CChhhHHHHHHHHHHHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          149 ------------------LS---FKAEDRVENIRRIGEVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       149 ------------------~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                                        ++   .+.++..+..+.. +........  +.. .+    ..++.+.+++-..+|+++..+.
T Consensus       407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a-~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~  485 (567)
T COG1132         407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLA-NAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP  485 (567)
T ss_pred             EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHh-ChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence                              11   1111221111111 111111111  111 11    2245567788899999999998


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +  +++|||++.++....+.+.+.+.
T Consensus       486 I--LILDEaTSalD~~tE~~I~~~l~  509 (567)
T COG1132         486 I--LILDEATSALDTETEALIQDALK  509 (567)
T ss_pred             E--EEEeccccccCHHhHHHHHHHHH
Confidence            8  89999999999888888877775

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.76  E-value=1.3e-18  Score=164.90  Aligned_cols=148  Identities=16%  Similarity=0.223  Sum_probs=105.8

Q ss_pred             cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      .++++|+++.|++ ..+++|+||++++|++++|+|+||||||||+++|+|+++ |.+|+|+++|.++.....    ..++
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~  412 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIA  412 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheE
Confidence            5889999999965 569999999999999999999999999999999999998 999999999988753110    0011


Q ss_pred             CCh-----------------------hhHHHHHHHHHHHHHHHHhc--CceE-E----EecCcccHHHHHHHHHhCCCCC
Q 026725          151 FKA-----------------------EDRVENIRRIGEVAKLFADA--GVIC-I----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       151 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +.+                       ++........ .........  +.-. +    ..++.+.+++-..+|+++....
T Consensus       413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~-~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~  491 (588)
T PRK13657        413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERA-QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP  491 (588)
T ss_pred             EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHh-CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            111                       1111111110 111111111  1111 1    1245566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       492 i--liLDEpts~LD~~t~~~i~~~l~~  516 (588)
T PRK13657        492 I--LILDEATSALDVETEAKVKAALDE  516 (588)
T ss_pred             E--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            9  899999999999888988887764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.76  E-value=1.1e-17  Score=141.29  Aligned_cols=147  Identities=19%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~  154 (234)
                      ++++|+++.|++. +++++||++.+||+++|+|+||||||||+++|+|+++ |++|+|+++|.++....  ...+++.++
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q   78 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQ   78 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEee
Confidence            3578899999764 8999999999999999999999999999999999988 99999999998764311  001111111


Q ss_pred             --------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 --------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 --------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                              ...+++...            ..+...+...++.     ....++.+.++....+++++..+.+  +++|+|
T Consensus        79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP  156 (235)
T cd03299          79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI--LLLDEP  156 (235)
T ss_pred             cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE--EEECCC
Confidence                    111111110            0111222222221     1123455667777889999999988  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++....+.+++.+++
T Consensus       157 t~gLD~~~~~~l~~~l~~  174 (235)
T cd03299         157 FSALDVRTKEKLREELKK  174 (235)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999988888888887764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.76  E-value=1.5e-18  Score=144.42  Aligned_cols=141  Identities=18%  Similarity=0.162  Sum_probs=98.6

Q ss_pred             ceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------ccccCCCC
Q 026725           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFK  152 (234)
Q Consensus        81 ~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------~~~~~~~~  152 (234)
                      +++++|++..+  |+||++++ ++++|+||||||||||+++|+|+++ |++|+|.++|.++...        ....+++.
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   80 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV   80 (214)
T ss_pred             eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence            89999998765  99999999 9999999999999999999999998 8999999999875310        00011111


Q ss_pred             hh--------hHHHHHHH----------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          153 AE--------DRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       153 ~~--------~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      ++        ...+++..          ...+...+...++.     ....++.+.++....++.++..+.+  +++|||
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP  158 (214)
T cd03297          81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL--LLLDEP  158 (214)
T ss_pred             ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            11        11111110          00122223333321     1233455667777889999999998  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++....+.+++.+++
T Consensus       159 t~~LD~~~~~~l~~~l~~  176 (214)
T cd03297         159 FSALDRALRLQLLPELKQ  176 (214)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999998888888877754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1e-17  Score=142.65  Aligned_cols=149  Identities=19%  Similarity=0.124  Sum_probs=102.6

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc------cc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------LN  146 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~------~~  146 (234)
                      .+++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++..    |.+|+|.++|+++...      ..
T Consensus         6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   85 (251)
T PRK14244          6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR   85 (251)
T ss_pred             EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence            3578999999888899999999999999999999999999999999998741    3689999999876321      01


Q ss_pred             ccCCCChh-------hHHHHHHHH--------------HHHHHHHHhcCceE---------EEecCcccHHHHHHHHHhC
Q 026725          147 RDLSFKAE-------DRVENIRRI--------------GEVAKLFADAGVIC---------IACLISPYRKDRDACRSML  196 (234)
Q Consensus       147 ~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ll  196 (234)
                      ..+++.++       ...+++...              ..+...+...++..         ...++.+.++....+++++
T Consensus        86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244         86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            11111111       111111110              01112223333211         1223445566778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|+|+..|+....+.+++.+++
T Consensus       166 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  194 (251)
T PRK14244        166 VKPTM--LLMDEPCSALDPVATNVIENLIQE  194 (251)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            99988  899999999988888888877764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.75  E-value=1.6e-18  Score=167.53  Aligned_cols=145  Identities=18%  Similarity=0.199  Sum_probs=101.9

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~  148 (234)
                      .++++|+++.|++   ..+++|+||++++||.++|+||||||||||+++|+|+++ |++|+|.+||.++.....    ..
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhh
Confidence            5889999999964   469999999999999999999999999999999999998 999999999988753110    01


Q ss_pred             CCCChhh-------HHHHHH------------HHHHH---HHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCC
Q 026725          149 LSFKAED-------RVENIR------------RIGEV---AKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       149 ~~~~~~~-------~~~~~~------------~~~~~---~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      +++.+++       .++++.            ...+.   .......  +.. .+    ..++.+.+++-..+|+++...
T Consensus       557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p  636 (711)
T TIGR00958       557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP  636 (711)
T ss_pred             ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            1111111       011111            00000   0111111  110 11    123456677888999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYK  223 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~  223 (234)
                      .+  +++|||++.++....+.+++
T Consensus       637 ~I--LILDEpTSaLD~~te~~i~~  658 (711)
T TIGR00958       637 RV--LILDEATSALDAECEQLLQE  658 (711)
T ss_pred             CE--EEEEccccccCHHHHHHHHH
Confidence            99  89999999998887777776

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=4.6e-18  Score=162.43  Aligned_cols=149  Identities=16%  Similarity=0.200  Sum_probs=103.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc----cccc-c---c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGL-N---R  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v----~~~~-~---~  147 (234)
                      +++++|++++|+++.+++|+||+|.+|++++|+||||||||||+|+|+|++. |++|+|.++|...    .... .   .
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~~~i~~~~q~~~~~~~~   79 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-ADGGSYTFPGNWQLAWVNQETPALPQP   79 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEecCCCCCCCC
Confidence            3678999999999999999999999999999999999999999999999888 9999999987531    1100 0   0


Q ss_pred             cCCCChhhHHH------------------HHHH-------------HHHHHHHHHhcCce------EEEecCcccHHHHH
Q 026725          148 DLSFKAEDRVE------------------NIRR-------------IGEVAKLFADAGVI------CIACLISPYRKDRD  190 (234)
Q Consensus       148 ~~~~~~~~~~~------------------~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  190 (234)
                      .+++..+....                  .+..             -..+..++...++.      .+..++.+.+++..
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence            00111100000                  0000             00111223333321      12334566777888


Q ss_pred             HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++.++..+.+  +++|||++.|+......+.+.+++
T Consensus       160 LA~aL~~~P~l--LLLDEPtn~LD~~~~~~L~~~L~~  194 (638)
T PRK10636        160 LAQALICRSDL--LLLDEPTNHLDLDAVIWLEKWLKS  194 (638)
T ss_pred             HHHHHccCCCE--EEEcCCCCcCCHHHHHHHHHHHHh
Confidence            99999999999  899999999988888888777764

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.3e-18  Score=150.19  Aligned_cols=68  Identities=28%  Similarity=0.254  Sum_probs=59.4

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccc
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRH  143 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~  143 (234)
                      +++++|++..|..    +.+++||||++.+||+++|+|+|||||||++++|+|+++.+    .+|+|.|+|+++..
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~   76 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS   76 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence            3678999988843    57999999999999999999999999999999999999722    46899999998753

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.75  E-value=2.9e-18  Score=161.44  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=104.1

Q ss_pred             cceeeceeeecCCc-----cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----
Q 026725           76 VAKSTNILWHKNSV-----DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----  146 (234)
                      .++++|++++|++.     .+++|+||++++|++++|+||||||||||+++|+|++. |++|+|.++|.++.....    
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-p~~G~i~~~g~~i~~~~~~~~~  415 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-PQEGEILLDGAAVSADSRDDYR  415 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHH
Confidence            57899999999752     58999999999999999999999999999999999998 999999999998864210    


Q ss_pred             ccCCCChhhHH-------HHHH---HHHHHHHHHHhcCceE-----------EEecCcccHHHHHHHHHhCCCCCceEEE
Q 026725          147 RDLSFKAEDRV-------ENIR---RIGEVAKLFADAGVIC-----------IACLISPYRKDRDACRSMLPEGDFIEVF  205 (234)
Q Consensus       147 ~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ll~~~~l~~~~  205 (234)
                      ..+++.+++..       ++..   .-..+.......+...           ...++.+.+++...+++++..+.+  ++
T Consensus       416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i--li  493 (555)
T TIGR01194       416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI--LL  493 (555)
T ss_pred             hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE--EE
Confidence            11112111110       0000   0001111122222111           123455667777899999999999  89


Q ss_pred             EeCChhhhhhcchhhHHHHH
Q 026725          206 MDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       206 ld~P~~~l~~R~~~~l~~~~  225 (234)
                      +|||++.++....+.+++.+
T Consensus       494 lDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       494 FDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             EeCCccCCCHHHHHHHHHHH
Confidence            99999999999888887654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=5.6e-18  Score=144.12  Aligned_cols=150  Identities=17%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc--c--CCccEEEEcCcccccc------c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------L  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~--~--p~~G~i~~~g~~v~~~------~  145 (234)
                      +++++|+++.|++..+++++||++.+||+++|+|+||||||||+++|+|++.  +  |++|+|+++|.++...      .
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   82 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL   82 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence            4678999999988889999999999999999999999999999999999864  1  3789999999886421      0


Q ss_pred             cccCCCChhh-------HHHHHHHH-------------HHHHHHHHhcCc---------eEEEecCcccHHHHHHHHHhC
Q 026725          146 NRDLSFKAED-------RVENIRRI-------------GEVAKLFADAGV---------ICIACLISPYRKDRDACRSML  196 (234)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll  196 (234)
                      ...+++.+++       ..+++...             ..+.......++         .....++.+.++....+++++
T Consensus        83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  162 (250)
T PRK14266         83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA  162 (250)
T ss_pred             hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            1111111111       11111100             001111122221         111233455666778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|+|+..++......+++.+++
T Consensus       163 ~~p~l--lllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        163 VSPEV--ILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             cCCCE--EEEcCCCccCCHHHHHHHHHHHHH
Confidence            99988  899999999998888888887764

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.75  E-value=2.4e-18  Score=148.60  Aligned_cols=147  Identities=16%  Similarity=0.180  Sum_probs=101.7

Q ss_pred             ceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           77 AKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        77 ~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      ++++|+++.|  +...+++|+||+|++||+++|+|+||||||||+++|+|+++  .+|+|+++|.++....    ...++
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~   80 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFG   80 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEE
Confidence            5789999999  45679999999999999999999999999999999999885  5799999998874311    01111


Q ss_pred             CChhhH-------HHHHHHH-----HHHHHHHHhcCce------------EE----EecCcccHHHHHHHHHhCCCCCce
Q 026725          151 FKAEDR-------VENIRRI-----GEVAKLFADAGVI------------CI----ACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       151 ~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +.+++.       .+++...     ..+.......++.            .+    ..++.+.++....+++++..+.+ 
T Consensus        81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i-  159 (275)
T cd03289          81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI-  159 (275)
T ss_pred             EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE-
Confidence            211111       1111100     0001111111110            00    11445567777889999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|+|+..++....+.+++.+++
T Consensus       160 -lllDEpts~LD~~~~~~l~~~l~~  183 (275)
T cd03289         160 -LLLDEPSAHLDPITYQVIRKTLKQ  183 (275)
T ss_pred             -EEEECccccCCHHHHHHHHHHHHH
Confidence             899999999998888888888875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.75  E-value=2.8e-18  Score=161.83  Aligned_cols=148  Identities=16%  Similarity=0.205  Sum_probs=105.5

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      -++++|++++|++  ..+++|+||++++|+.++|+|+||||||||+++|+|++. |.+|+|+++|.++.....    ..+
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g~~i~~~~~~~~~~~i  408 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRRQV  408 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEeHHhcCHHHHHhhc
Confidence            4889999999964  568999999999999999999999999999999999998 999999999988653110    001


Q ss_pred             CCChh------------------------hHHHHHHHHHHHHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCC
Q 026725          150 SFKAE------------------------DRVENIRRIGEVAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       150 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~  198 (234)
                      ++.++                        +..+..... .+.......  ++ ..+    ..++.+.+++-..+|.++..
T Consensus       409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~-~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~  487 (571)
T TIGR02203       409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAA-YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD  487 (571)
T ss_pred             eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHc-ChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            11111                        111111110 011111111  11 011    12455677788899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+  +++|||++.++....+.+++.+++
T Consensus       488 ~~i--llLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       488 API--LILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             CCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence            988  899999999999999999888775

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.75  E-value=9.4e-18  Score=158.06  Aligned_cols=149  Identities=16%  Similarity=0.141  Sum_probs=103.8

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-cccccccccC---
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDL---  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~~---  149 (234)
                      ++++++|+++.|+ ++.+++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. .+. ....+.   
T Consensus         5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~~~i~-~v~Q~~~~~   82 (556)
T PRK11819          5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAPGIKVG-YLPQEPQLD   82 (556)
T ss_pred             EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEecCCCCC
Confidence            4789999999998 7889999999999999999999999999999999999998 89999998743 121 000000   


Q ss_pred             -CCChhhHHHH-HHH-------H-------------------------------------HHHHHHHHhcCc----eEEE
Q 026725          150 -SFKAEDRVEN-IRR-------I-------------------------------------GEVAKLFADAGV----ICIA  179 (234)
Q Consensus       150 -~~~~~~~~~~-~~~-------~-------------------------------------~~~~~~~~~~~~----~~~~  179 (234)
                       .++..+.... ...       .                                     ..+...+...++    ..+.
T Consensus        83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  162 (556)
T PRK11819         83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT  162 (556)
T ss_pred             CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence             1111111000 000       0                                     001111111222    1123


Q ss_pred             ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++.+.++....++.++..+.+  +++|||++.|+......+++.+++
T Consensus       163 ~LSgGqkqrv~la~al~~~p~v--lLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        163 KLSGGERRRVALCRLLLEKPDM--LLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             hcCHHHHHHHHHHHHHhCCCCE--EEEcCCCCcCChHHHHHHHHHHHh
Confidence            3456667778899999999998  899999999998888888888775

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.75  E-value=5.6e-18  Score=157.59  Aligned_cols=149  Identities=15%  Similarity=0.153  Sum_probs=106.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCccccccc-----ccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHGL-----NRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~v~~~~-----~~~  148 (234)
                      +++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |  ++|+|.++|+++....     ...
T Consensus         1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            3678999999998889999999999999999999999999999999999887 5  6999999998764210     011


Q ss_pred             CCCChhhH--------HHHHHH----------------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCC
Q 026725          149 LSFKAEDR--------VENIRR----------------IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       149 ~~~~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      +++.+++.        .+++..                ...+..++..+++.      ....++.+.++....+++++..
T Consensus        80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~  159 (500)
T TIGR02633        80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ  159 (500)
T ss_pred             EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence            11211110        011100                00122223333321      1233556677778899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||+..|+....+.+++.+++
T Consensus       160 p~l--llLDEPt~~LD~~~~~~l~~~l~~  186 (500)
T TIGR02633       160 ARL--LILDEPSSSLTEKETEILLDIIRD  186 (500)
T ss_pred             CCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            988  899999999988888888877654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.4e-18  Score=165.56  Aligned_cols=149  Identities=19%  Similarity=0.193  Sum_probs=106.9

Q ss_pred             ccceeeceeeecC-----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           75 TVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        75 ~~~~~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ++++++|+++.|+           ...+++++||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~  390 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDT  390 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCc
Confidence            5799999999996           1468999999999999999999999999999999999998 899999999987642


Q ss_pred             cc-------cccCCCChhh----------HHHHHHH-------------HHHHHHHHHhcCce------EEEecCcccHH
Q 026725          144 GL-------NRDLSFKAED----------RVENIRR-------------IGEVAKLFADAGVI------CIACLISPYRK  187 (234)
Q Consensus       144 ~~-------~~~~~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~------~~~~~~~~~~~  187 (234)
                      ..       ...+++..++          ..+++..             ...+..++...++.      ....++.+.++
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence            10       1112221111          1111100             00122233333331      11334566777


Q ss_pred             HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ...++++++..+.+  +++|||+..|+......+++.++
T Consensus       471 Rv~iAraL~~~p~l--lllDEPts~LD~~~~~~i~~ll~  507 (623)
T PRK10261        471 RICIARALALNPKV--IIADEAVSALDVSIRGQIINLLL  507 (623)
T ss_pred             HHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            88899999999998  89999999998888888887774

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.75  E-value=4.6e-18  Score=151.88  Aligned_cols=142  Identities=16%  Similarity=0.151  Sum_probs=100.0

Q ss_pred             ceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cccCCCC
Q 026725           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRDLSFK  152 (234)
Q Consensus        81 ~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~~~~~  152 (234)
                      |+++.|++..+  ++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....        ...+++.
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEE
Confidence            78899987664  9999999999999999999999999999999998 89999999998864210        1111111


Q ss_pred             hh--------hHHHHHHHH----------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          153 AE--------DRVENIRRI----------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       153 ~~--------~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      ++        ...+++...          ..+..++...++..     ...++.+.++....+++++..+.+  +++|||
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l--llLDEP  158 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL--LLMDEP  158 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCC
Confidence            11        111211110          01222233333321     123455667778899999999998  899999


Q ss_pred             hhhhhhcchhhHHHHHHc
Q 026725          210 LQVCEARDPKGLYKLARE  227 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~~  227 (234)
                      +..|+......+++.+++
T Consensus       159 ts~LD~~~~~~l~~~L~~  176 (354)
T TIGR02142       159 LAALDDPRKYEILPYLER  176 (354)
T ss_pred             CcCCCHHHHHHHHHHHHH
Confidence            999988888888877764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.1e-17  Score=156.80  Aligned_cols=147  Identities=17%  Similarity=0.186  Sum_probs=103.6

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-cccccccc----CCC
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD----LSF  151 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~----~~~  151 (234)
                      ++++|+++.|++.++++++||++.+|++++|+||||||||||+|+|+|+++ |++|+|.++|.. +. .....    ..+
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~-~~~q~~~~~~~~   79 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPNERLG-KLRQDQFAFEEF   79 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEeccCCcCCCC
Confidence            678999999998899999999999999999999999999999999999998 899999998742 21 00000    001


Q ss_pred             ChhhHHHH----HH-------------------------------------HHHHHHHHHHhcCce------EEEecCcc
Q 026725          152 KAEDRVEN----IR-------------------------------------RIGEVAKLFADAGVI------CIACLISP  184 (234)
Q Consensus       152 ~~~~~~~~----~~-------------------------------------~~~~~~~~~~~~~~~------~~~~~~~~  184 (234)
                      +..+....    ..                                     .-..+...+...++.      ....++.+
T Consensus        80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG  159 (530)
T PRK15064         80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG  159 (530)
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence            11110000    00                                     000111222223321      12334566


Q ss_pred             cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          185 YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       185 ~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++....++.++..+.+  +++|||++.|+......+.+.+.+
T Consensus       160 q~qrv~lA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        160 WKLRVLLAQALFSNPDI--LLLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HHHHHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHHHh
Confidence            67778889999999988  899999999998888888888864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.75  E-value=6.5e-18  Score=158.24  Aligned_cols=150  Identities=17%  Similarity=0.191  Sum_probs=105.9

Q ss_pred             ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCccccccc
Q 026725           75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRHGL  145 (234)
Q Consensus        75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~~~~  145 (234)
                      ++++++|+++.|++    +.+++++||++++||+++|+||||||||||+|+|+|+++ |     ++|+|.++|+++....
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~-~~~~~~~~G~i~~~g~~i~~~~   82 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP-SPPVVYPSGDIRFHGESLLHAS   82 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCcCCccceEEEECCEecccCC
Confidence            46899999999963    579999999999999999999999999999999999987 4     6899999998864210


Q ss_pred             --------cccCCCChhhH----------HHHHHH-------------HHHHHHHHHhcCce--------EEEecCcccH
Q 026725          146 --------NRDLSFKAEDR----------VENIRR-------------IGEVAKLFADAGVI--------CIACLISPYR  186 (234)
Q Consensus       146 --------~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~--------~~~~~~~~~~  186 (234)
                              ...+++.+++.          .+.+..             ...+...+...++.        ....++.+.+
T Consensus        83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~  162 (529)
T PRK15134         83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER  162 (529)
T ss_pred             HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence                    01122222211          000000             00111222222321        1233455667


Q ss_pred             HHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          187 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       187 ~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++...+++++..+.+  +++|||++.|+......+++.+++
T Consensus       163 qrv~iAraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        163 QRVMIAMALLTRPEL--LIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHH
Confidence            777899999999998  899999999988888888777654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.75  E-value=2.9e-18  Score=161.20  Aligned_cols=148  Identities=18%  Similarity=0.138  Sum_probs=104.5

Q ss_pred             cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      .++++|++++|++ ..+++|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.++....    ...++
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~  400 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFS  400 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheE
Confidence            5889999999964 569999999999999999999999999999999999998 99999999999876311    11122


Q ss_pred             CChhhHHHH---HH-----H-HHHHHHHHHhcCceE---E-------EecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          151 FKAEDRVEN---IR-----R-IGEVAKLFADAGVIC---I-------ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       151 ~~~~~~~~~---~~-----~-~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      +.+++..-.   ++     . -..+.......+...   .       ..++.+.+++-..+++++..+.+  +++|||++
T Consensus       401 ~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i--lilDE~ts  478 (547)
T PRK10522        401 AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI--LLLDEWAA  478 (547)
T ss_pred             EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCCC
Confidence            222221100   00     0 001111111111110   0       13445667777899999999999  89999999


Q ss_pred             hhhhcchhhHHHHHH
Q 026725          212 VCEARDPKGLYKLAR  226 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~  226 (234)
                      .++....+.+++.+.
T Consensus       479 ~LD~~~~~~i~~~l~  493 (547)
T PRK10522        479 DQDPHFRREFYQVLL  493 (547)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            998888887777664

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.75  E-value=3.2e-18  Score=161.63  Aligned_cols=148  Identities=17%  Similarity=0.180  Sum_probs=104.2

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~  148 (234)
                      .++++|+++.|++   ..+++|+||++++||.++|+|+||||||||+++|+|+++ |.+|+|+++|.++.....    ..
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHh
Confidence            5889999999964   469999999999999999999999999999999999998 999999999987653110    01


Q ss_pred             CCCChhh-----------------------HHHHHHHHHHHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCC
Q 026725          149 LSFKAED-----------------------RVENIRRIGEVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       149 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~  198 (234)
                      +++.+++                       ........ .........  +.. .+    ..++.+.+++-..+|+++..
T Consensus       416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~-~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~  494 (576)
T TIGR02204       416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAA-HAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD  494 (576)
T ss_pred             ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHc-CcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence            1111111                       11111110 011111111  111 11    12345667778899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++  +++|||++.++....+.+++.+++
T Consensus       495 ~~i--lilDEpts~lD~~~~~~i~~~l~~  521 (576)
T TIGR02204       495 API--LLLDEATSALDAESEQLVQQALET  521 (576)
T ss_pred             CCe--EEEeCcccccCHHHHHHHHHHHHH
Confidence            998  899999999988888888777664

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.74  E-value=5.1e-18  Score=157.61  Aligned_cols=145  Identities=17%  Similarity=0.241  Sum_probs=102.7

Q ss_pred             eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChh
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAE  154 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~  154 (234)
                      +|+++.|++.++++|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....     ...+++.++
T Consensus         2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   80 (491)
T PRK10982          2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQ   80 (491)
T ss_pred             CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence            688999988889999999999999999999999999999999999988 89999999998764210     011111111


Q ss_pred             h--------HHHHHH---------------HHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          155 D--------RVENIR---------------RIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       155 ~--------~~~~~~---------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      +        ..+++.               ....+...+...++.     ....++.+.++....+++++..+.+  +++
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l--llL  158 (491)
T PRK10982         81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI--VIM  158 (491)
T ss_pred             ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence            1        001100               000122223323321     1233455667778889999999988  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||+..|+......+++.+++
T Consensus       159 DEPt~~LD~~~~~~l~~~l~~  179 (491)
T PRK10982        159 DEPTSSLTEKEVNHLFTIIRK  179 (491)
T ss_pred             eCCCCCCCHHHHHHHHHHHHH
Confidence            999999988888888777654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.74  E-value=2.6e-18  Score=165.67  Aligned_cols=149  Identities=20%  Similarity=0.204  Sum_probs=105.1

Q ss_pred             cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|++++|+  +..+++++||++++|+.++|+|+||||||||+++|+|++. |++|+|++||.++.....    ..+
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i  533 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQM  533 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhC
Confidence            588999999995  3569999999999999999999999999999999999998 999999999998763110    011


Q ss_pred             CCChhh-------HHHHHH------------HHH---HHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAED-------RVENIR------------RIG---EVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~-------~~~~~~------------~~~---~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++       .++++.            ...   .........  +.- .+    ..++.+.+++...+|+++..+.
T Consensus       534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~  613 (694)
T TIGR01846       534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR  613 (694)
T ss_pred             eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            111111       011110            000   001111111  111 11    1234566777889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       614 i--lilDEpts~LD~~~~~~i~~~l~~  638 (694)
T TIGR01846       614 I--LIFDEATSALDYESEALIMRNMRE  638 (694)
T ss_pred             E--EEEECCCcCCCHHHHHHHHHHHHH
Confidence            9  899999999999998888887765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.74  E-value=3.5e-18  Score=161.85  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             cceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCC
Q 026725           76 VAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~  150 (234)
                      .++++|+++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.++....    ...++
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~  412 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIA  412 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheE
Confidence            5889999999975 578999999999999999999999999999999999998 99999999998765311    00011


Q ss_pred             CChhh-------HHHHHH-------------HHHH--HHHHHHh-c-CceE-E----EecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAED-------RVENIR-------------RIGE--VAKLFAD-A-GVIC-I----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~-------~~~~~~-------------~~~~--~~~~~~~-~-~~~~-~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.+++       .++++.             ....  ....... + +... +    ..++.+.+++-..+++++..+.+
T Consensus       413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i  492 (585)
T TIGR01192       413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI  492 (585)
T ss_pred             EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            11111       111111             0000  0011111 1 1100 1    12345667777899999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.++....+.+++.+++
T Consensus       493 --lilDEpts~LD~~~~~~i~~~l~~  516 (585)
T TIGR01192       493 --LVLDEATSALDVETEARVKNAIDA  516 (585)
T ss_pred             --EEEECCccCCCHHHHHHHHHHHHH
Confidence              899999999999888888877764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.74  E-value=1.7e-18  Score=162.57  Aligned_cols=149  Identities=21%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|++  ..+++|+||++++|+.++|+||||||||||+++|+|+++ |.+|+|.++|.++....    ...+
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhhe
Confidence            5889999999953  579999999999999999999999999999999999998 99999999998865311    0001


Q ss_pred             CCChhh-------HHHHHH-------------HHH--HHHHHHHhc--CceE-----EEecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAED-------RVENIR-------------RIG--EVAKLFADA--GVIC-----IACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~-------~~~~~~-------------~~~--~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++       .++++.             ...  .........  +...     ...++.+.+++...+++++..+.
T Consensus       395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            111111       111111             000  011111111  1111     12235566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       475 i--lilDEpts~LD~~~~~~i~~~l~~  499 (544)
T TIGR01842       475 L--VVLDEPNSNLDEEGEQALANAIKA  499 (544)
T ss_pred             E--EEEeCCccccCHHHHHHHHHHHHH
Confidence            8  899999999998888888877764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.74  E-value=1.8e-18  Score=163.33  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=103.7

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|+++.|+.  ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|+++|+++.....    ..+
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i  391 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRL  391 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhhe
Confidence            4788999999964  569999999999999999999999999999999999998 999999999988743110    001


Q ss_pred             CCChhh-------HHHHH------------HHHHHHH---HHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAED-------RVENI------------RRIGEVA---KLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~~-------~~~~~------------~~~~~~~---~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+++       .++++            .......   ..... + +.. .+    ..++.+.+++...+++++..+.
T Consensus       392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~  471 (569)
T PRK10789        392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE  471 (569)
T ss_pred             EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            111110       01111            0000000   00110 0 111 11    1234566777789999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       472 i--lllDEpts~LD~~~~~~i~~~l~~  496 (569)
T PRK10789        472 I--LILDDALSAVDGRTEHQILHNLRQ  496 (569)
T ss_pred             E--EEEECccccCCHHHHHHHHHHHHH
Confidence            9  899999999999888888887764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.2e-17  Score=154.75  Aligned_cols=150  Identities=16%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----C-
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----L-  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----~-  149 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|++. |++|+|.++|+.-.......    + 
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~~~  396 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-PDSGTVKWSENANIGYYAQDHAYDFE  396 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEEEEcccccccCC
Confidence            37899999999998889999999999999999999999999999999999988 89999999874311111110    0 


Q ss_pred             -CCChhhHHHHHH----HHHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          150 -SFKAEDRVENIR----RIGEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       150 -~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                       .++..+......    .-..+...+...++      .....++.+.++....++.++..+.+  +++|||+..|+....
T Consensus       397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l--llLDEPt~~LD~~~~  474 (530)
T PRK15064        397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV--LVMDEPTNHMDMESI  474 (530)
T ss_pred             CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHH
Confidence             011111100000    00011222222322      12344556677778889999999998  899999999998888


Q ss_pred             hhHHHHHHc
Q 026725          219 KGLYKLARE  227 (234)
Q Consensus       219 ~~l~~~~~~  227 (234)
                      ..+++.+++
T Consensus       475 ~~l~~~l~~  483 (530)
T PRK15064        475 ESLNMALEK  483 (530)
T ss_pred             HHHHHHHHH
Confidence            888888775

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.73  E-value=3.5e-17  Score=136.46  Aligned_cols=143  Identities=17%  Similarity=0.151  Sum_probs=97.1

Q ss_pred             eeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------ccc
Q 026725           78 KSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NRD  148 (234)
Q Consensus        78 ~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~~  148 (234)
                      .+.|+.+.|+ ...+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++....        ...
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcce
Confidence            4678899996 5679999999999999999999999999999999999988 89999999998653210        011


Q ss_pred             CCCChhh-------HHHHHHHH-----HHHHHHHHhcCc----------------eEEEecCcccHHHHHHHHHhCCCCC
Q 026725          149 LSFKAED-------RVENIRRI-----GEVAKLFADAGV----------------ICIACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       149 ~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +++.+++       ..+++...     ..........++                .....++.+.++....++.++..+.
T Consensus        81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            1111111       11111100     000111111110                0122345566677788999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHH
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYK  223 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~  223 (234)
                      +  +++|||+..++......+++
T Consensus       161 i--lllDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         161 I--VFLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             E--EEEeCCccccCHHHHHHHHH
Confidence            8  89999999998877776665

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=146.82  Aligned_cols=150  Identities=19%  Similarity=0.140  Sum_probs=104.4

Q ss_pred             ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc----CCccEEEEcCcccccc----
Q 026725           75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~----p~~G~i~~~g~~v~~~----  144 (234)
                      .+++++|+++.|.  ...+++++||+|++||+++|+|+||||||||+++|+|++..    |.+|+|.++|+++...    
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~  158 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS  158 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            4789999999994  45799999999999999999999999999999999998852    4689999999987521    


Q ss_pred             --ccccCCCChhh-------HHHHHHHHH-------------HHHHHHHhcCce---------EEEecCcccHHHHHHHH
Q 026725          145 --LNRDLSFKAED-------RVENIRRIG-------------EVAKLFADAGVI---------CIACLISPYRKDRDACR  193 (234)
Q Consensus       145 --~~~~~~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  193 (234)
                        ....+++.+++       ..+++.+..             .+...+...++.         ....++.+.++....++
T Consensus       159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR  238 (329)
T PRK14257        159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR  238 (329)
T ss_pred             HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence              11112222111       112221100             011112222211         11234556677778999


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +++..+.+  +++|+|+..++....+.+.+.++
T Consensus       239 Al~~~p~I--lLLDEPts~LD~~~~~~i~~~i~  269 (329)
T PRK14257        239 AIALEPEV--LLMDEPTSALDPIATAKIEELIL  269 (329)
T ss_pred             HHHhCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999998  89999999998877777776665

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.73  E-value=1.5e-17  Score=155.15  Aligned_cols=148  Identities=16%  Similarity=0.177  Sum_probs=104.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.|+  .+++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++....     ...+
T Consensus       264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i  340 (510)
T PRK09700        264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGM  340 (510)
T ss_pred             cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCc
Confidence            4789999998764  48999999999999999999999999999999999988 89999999998763210     0112


Q ss_pred             CCChhh-----------HHHHHHH---------------------HHHHHHHHHhcCce------EEEecCcccHHHHHH
Q 026725          150 SFKAED-----------RVENIRR---------------------IGEVAKLFADAGVI------CIACLISPYRKDRDA  191 (234)
Q Consensus       150 ~~~~~~-----------~~~~~~~---------------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  191 (234)
                      ++.+++           ..+++..                     ...+...+..+++.      ....++.+.++....
T Consensus       341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l  420 (510)
T PRK09700        341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI  420 (510)
T ss_pred             EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence            222211           1111000                     00112223333331      123345667778889


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++.++..+.+  +++|||+..|+......+++.+++
T Consensus       421 Aral~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~  454 (510)
T PRK09700        421 SKWLCCCPEV--IIFDEPTRGIDVGAKAEIYKVMRQ  454 (510)
T ss_pred             HHHHhcCCCE--EEECCCCCCcCHHHHHHHHHHHHH
Confidence            9999999988  899999999998888888887753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.73  E-value=1.8e-17  Score=154.24  Aligned_cols=150  Identities=17%  Similarity=0.240  Sum_probs=104.4

Q ss_pred             ccceeeceeeec---CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----c
Q 026725           75 TVAKSTNILWHK---NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----N  146 (234)
Q Consensus        75 ~~~~~~~l~~~~---~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~  146 (234)
                      ++++++|+++.|   ++..+++++||++.+||+++|+||||||||||+|+|+|++++|.+|+|.++|+++....     .
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence            378999999998   34679999999999999999999999999999999999987237999999998764210     0


Q ss_pred             ccCCCChhhH-----------HHHHH-----------------HHHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026725          147 RDLSFKAEDR-----------VENIR-----------------RIGEVAKLFADAGVI------CIACLISPYRKDRDAC  192 (234)
Q Consensus       147 ~~~~~~~~~~-----------~~~~~-----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  192 (234)
                      ..+++.+++.           .+.+.                 .-..+...+..+++.      ....++.+.++....+
T Consensus       336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  415 (500)
T TIGR02633       336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA  415 (500)
T ss_pred             CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence            1122211110           00000                 000122233333331      1234456677778889


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +.++..+.+  +++|||+..|+......+++.++
T Consensus       416 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  447 (500)
T TIGR02633       416 KMLLTNPRV--LILDEPTRGVDVGAKYEIYKLIN  447 (500)
T ss_pred             HHHhhCCCE--EEEcCCCCCcCHhHHHHHHHHHH
Confidence            999999988  89999999998888887775554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=1.3e-17  Score=129.72  Aligned_cols=139  Identities=18%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccccccCCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGLNRDLSFK  152 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~~~~~~~~  152 (234)
                      ++.++|++.+.++...+.++||+|.+||++.|+||||||||||+..+.|.+. +.   +|++.++++++..        .
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La-~~F~~~G~~~l~~~~l~~--------l   72 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA-GQFSCTGELWLNEQRLDM--------L   72 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcc-cCcceeeEEEECCeeccc--------c
Confidence            4567899999999999999999999999999999999999999999999986 43   6999999999863        2


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCceEEEe-----------------------------------------cCcccHHHHHH
Q 026725          153 AEDRVENIRRIGEVAKLFADAGVICIAC-----------------------------------------LISPYRKDRDA  191 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~  191 (234)
                      |..++       +++.+||+.-+++...                                         .+.+.+.+...
T Consensus        73 Pa~qR-------q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL  145 (213)
T COG4136          73 PAAQR-------QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL  145 (213)
T ss_pred             chhhh-------heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence            22211       4555555544332211                                         11223333455


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcc----hhhHHHHHHcCcCCC
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARD----PKGLYKLAREGKVKG  232 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~----~~~l~~~~~~~~~~~  232 (234)
                      .+.++..+.+  +++|+|++-++.--    ++-.|.+.++-.|+.
T Consensus       146 ~R~Lla~Pk~--lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPt  188 (213)
T COG4136         146 LRALLAQPKA--LLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPT  188 (213)
T ss_pred             HHHHHhCcce--eeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            5667777777  78999999886433    344666666655553

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=5e-18  Score=166.80  Aligned_cols=152  Identities=19%  Similarity=0.216  Sum_probs=104.7

Q ss_pred             ccceeeceeeecCCc---cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cc
Q 026725           75 TVAKSTNILWHKNSV---DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~  147 (234)
                      ..++++|++++|+.+   .+++++||+|++|+.++|+|+|||||||++++|.+++. |.+|+|++||.|++..-    ..
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~  427 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRS  427 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHh
Confidence            368999999999755   68999999999999999999999999999999999999 99999999999987421    00


Q ss_pred             cCCCChhhH-------HHHHHH------------H-------HHHHHHHHhcCceEE---EecCcccHHHHHHHHHhCCC
Q 026725          148 DLSFKAEDR-------VENIRR------------I-------GEVAKLFADAGVICI---ACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       148 ~~~~~~~~~-------~~~~~~------------~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ll~~  198 (234)
                      .+++..++.       .+++++            .       ..+..+.+.+...+-   ..++.+.+++.+++|+++..
T Consensus       428 ~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~  507 (1228)
T KOG0055|consen  428 QIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN  507 (1228)
T ss_pred             hcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence            111111110       000000            0       011111111111100   12355678888999999999


Q ss_pred             CCceEEEEeCChhhhhhcchh---hHHHHHHcCc
Q 026725          199 GDFIEVFMDVPLQVCEARDPK---GLYKLAREGK  229 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~---~l~~~~~~~~  229 (234)
                      +.+  +++|||++.|+....+   ...+++++|.
T Consensus       508 P~I--LLLDEaTSaLD~~se~~Vq~ALd~~~~gr  539 (1228)
T KOG0055|consen  508 PKI--LLLDEATSALDAESERVVQEALDKASKGR  539 (1228)
T ss_pred             CCE--EEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence            999  8999999999876654   4445555554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.73  E-value=2e-17  Score=153.49  Aligned_cols=150  Identities=15%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcCccccccc-----ccc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCRHGL-----NRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g~~v~~~~-----~~~  148 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ + .+|+|+++|+++....     ...
T Consensus       259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-QGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-cccCCeEEEecccCCCCCCHHHHHhh
Confidence            57999999999988889999999999999999999999999999999999765 4 6899999997652110     111


Q ss_pred             CCCChhhHH----------HHHHH----------------HHHHHHHHHhcCceE------EEecCcccHHHHHHHHHhC
Q 026725          149 LSFKAEDRV----------ENIRR----------------IGEVAKLFADAGVIC------IACLISPYRKDRDACRSML  196 (234)
Q Consensus       149 ~~~~~~~~~----------~~~~~----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll  196 (234)
                      +++.+++..          .....                -..+...+..+++..      ...++.+.++....++.++
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence            222222210          00000                001112222223221      1223455666778889999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+.+  +++|||+..++......+++.+++
T Consensus       418 ~~p~l--llLDEPt~gLD~~~~~~l~~~L~~  446 (490)
T PRK10938        418 KHPTL--LILDEPLQGLDPLNRQLVRRFVDV  446 (490)
T ss_pred             cCCCE--EEEcCccccCCHHHHHHHHHHHHH
Confidence            99998  899999999988888888876654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.73  E-value=3.8e-17  Score=137.04  Aligned_cols=150  Identities=17%  Similarity=0.189  Sum_probs=101.9

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccccc-cccc
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHG-LNRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~-~~~~  148 (234)
                      ++.++|++++|.+    +++++++||++++||+++|+||||||||||+++|+|+++.  |.+|+|.++|+++... ....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            4568899999964    5799999999999999999999999999999999998752  5899999999876321 0001


Q ss_pred             CCCChh--------hHHHHHHHHH---------------HHHH-HHHhcCce-----EEEecCcccHHHHHHHHHhCCCC
Q 026725          149 LSFKAE--------DRVENIRRIG---------------EVAK-LFADAGVI-----CIACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       149 ~~~~~~--------~~~~~~~~~~---------------~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      +++.++        ...+++....               .... .+...+..     ....++.+.++....++.++..+
T Consensus        83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  162 (226)
T cd03234          83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP  162 (226)
T ss_pred             EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence            111111        1111111100               0001 11111211     11233455566777889999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +++|||+..++....+.+++.+++
T Consensus       163 ~i--lllDEP~~gLD~~~~~~~~~~l~~  188 (226)
T cd03234         163 KV--LILDEPTSGLDSFTALNLVSTLSQ  188 (226)
T ss_pred             CE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            88  899999999998888888887764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=2.2e-17  Score=153.89  Aligned_cols=150  Identities=19%  Similarity=0.254  Sum_probs=105.4

Q ss_pred             ccceeeceeeecC---CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----c
Q 026725           75 TVAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----N  146 (234)
Q Consensus        75 ~~~~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~  146 (234)
                      ++++++|+++.|+   +..+++++||++++|++++|+|+||||||||+|+|+|++++|++|+|.++|+++....     .
T Consensus       258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            4689999999993   4679999999999999999999999999999999999986348999999998764210     0


Q ss_pred             ccCCCChhh-----------HHHHHHH-----------------HHHHHHHHHhcCce------EEEecCcccHHHHHHH
Q 026725          147 RDLSFKAED-----------RVENIRR-----------------IGEVAKLFADAGVI------CIACLISPYRKDRDAC  192 (234)
Q Consensus       147 ~~~~~~~~~-----------~~~~~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  192 (234)
                      ..+++.+++           ..+++..                 ...+...+..+++.      ....++.+.++....+
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA  417 (506)
T PRK13549        338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA  417 (506)
T ss_pred             CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence            111221111           0011100                 00122223333331      1234456677778899


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +.++..+.+  +++|||+..|+....+.+++.++
T Consensus       418 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  449 (506)
T PRK13549        418 KCLLLNPKI--LILDEPTRGIDVGAKYEIYKLIN  449 (506)
T ss_pred             HHHhhCCCE--EEEcCCCCCcCHhHHHHHHHHHH
Confidence            999999988  89999999998888888777665

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.73  E-value=1.5e-17  Score=149.86  Aligned_cols=142  Identities=16%  Similarity=0.223  Sum_probs=100.2

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----ccccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~~~  150 (234)
                      -++++|+++.|. ++++++|+||++++|+.++++||||+||||++|.|.+++. ..+|.|.+||+|++.-    +...+|
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IG  615 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIG  615 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcC
Confidence            588999999995 6789999999999999999999999999999999999998 8899999999998641    111233


Q ss_pred             CChhhHH-------------------HHHHHHHHHHHH----HHhcCc--eEE----EecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAEDRV-------------------ENIRRIGEVAKL----FADAGV--ICI----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~~~-------------------~~~~~~~~~~~~----~~~~~~--~~~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      ..|++..                   +..-..++.+++    ++-+.-  ..+    ..++.+.+++.++++.+++.+.+
T Consensus       616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i  695 (790)
T KOG0056|consen  616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI  695 (790)
T ss_pred             cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence            3333210                   111111112211    111100  001    22345667888999999999999


Q ss_pred             eEEEEeCChhhhhhcchhh
Q 026725          202 IEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~  220 (234)
                        +++||.++.|+-.....
T Consensus       696 --IlLDEATSALDT~tER~  712 (790)
T KOG0056|consen  696 --ILLDEATSALDTNTERA  712 (790)
T ss_pred             --EEEcchhhhcCCccHHH
Confidence              89999999997554433

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.73  E-value=3.7e-17  Score=153.91  Aligned_cols=148  Identities=17%  Similarity=0.136  Sum_probs=102.9

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-ccccccccC----
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----  149 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~~----  149 (234)
                      +++++|+++.|+ ++++++|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.+++.. +. ......    
T Consensus         4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~-~v~Q~~~~~~   81 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAPGIKVG-YLPQEPQLDP   81 (552)
T ss_pred             EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEE-EEeccCCCCC
Confidence            688999999997 7789999999999999999999999999999999999988 899999987531 21 000000    


Q ss_pred             CCChhhHHHH-HHH-------H-------------------------------------HHHHHHHHhcCc----eEEEe
Q 026725          150 SFKAEDRVEN-IRR-------I-------------------------------------GEVAKLFADAGV----ICIAC  180 (234)
Q Consensus       150 ~~~~~~~~~~-~~~-------~-------------------------------------~~~~~~~~~~~~----~~~~~  180 (234)
                      .++..+.... ...       .                                     ..+...+...++    ..+..
T Consensus        82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  161 (552)
T TIGR03719        82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK  161 (552)
T ss_pred             CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhh
Confidence            0111111000 000       0                                     000111111111    11233


Q ss_pred             cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++.+.++....++.++..+.+  +++|||+..|+....+.+++.+++
T Consensus       162 LSgGqkqrv~la~al~~~p~l--LLLDEPt~~LD~~~~~~l~~~L~~  206 (552)
T TIGR03719       162 LSGGERRRVALCRLLLSKPDM--LLLDEPTNHLDAESVAWLEQHLQE  206 (552)
T ss_pred             cCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCChHHHHHHHHHHHh
Confidence            456667778899999999988  899999999998888888888775

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.72  E-value=5.6e-18  Score=155.86  Aligned_cols=142  Identities=20%  Similarity=0.197  Sum_probs=99.2

Q ss_pred             ccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC---CccEEEEcCccccccccc
Q 026725           75 TVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNCRHGLNR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p---~~G~i~~~g~~v~~~~~~  147 (234)
                      ++++++|+++.|..    +.+++|+||++.+||+++|+|.|||||||++++|.|+++..   .+|+|.++|+++..    
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~----   79 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG----   79 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc----
Confidence            37899999998853    26999999999999999999999999999999999999833   27999999998753    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHH----------------------------------------HHhcCceE-------EEe
Q 026725          148 DLSFKAEDRVENIRRIGEVAKL----------------------------------------FADAGVIC-------IAC  180 (234)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~-------~~~  180 (234)
                         ++..+++..++.  .++++                                        +..-++-.       --.
T Consensus        80 ---l~~~~~r~~rg~--~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPhe  154 (539)
T COG1123          80 ---LSEREMRKLRGK--RIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ  154 (539)
T ss_pred             ---CCHHHHHHhccc--cEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence               222222111111  11111                                        11111100       011


Q ss_pred             cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++.+.+++.-++.+++..+.+  ++.|||+..|+....+++.+.+++
T Consensus       155 LSGG~rQRv~iAmALa~~P~L--LIaDEPTTaLDvt~q~qIL~llk~  199 (539)
T COG1123         155 LSGGMRQRVMIAMALALKPKL--LIADEPTTALDVTTQAQILDLLKD  199 (539)
T ss_pred             cCchHHHHHHHHHHHhCCCCE--EEECCCccccCHHHHHHHHHHHHH
Confidence            234455666677888888888  899999999987777777766653

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.3e-18  Score=155.74  Aligned_cols=147  Identities=20%  Similarity=0.199  Sum_probs=99.0

Q ss_pred             cceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      .++.+|+++.|++- ++++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+|.+||.+.+....    ..+.
T Consensus       320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~  398 (559)
T COG4988         320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQIS  398 (559)
T ss_pred             eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHee
Confidence            34456999999754 89999999999999999999999999999999999998 899999999998764210    0011


Q ss_pred             CChh-------hHHHHHHH------HHHHHHHHHhcCc-----------eEEEe----cCcccHHHHHHHHHhCCCCCce
Q 026725          151 FKAE-------DRVENIRR------IGEVAKLFADAGV-----------ICIAC----LISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       151 ~~~~-------~~~~~~~~------~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      +.++       ..++++..      -.++.......++           ..+..    .+.+.+++...+|+++....+ 
T Consensus       399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l-  477 (559)
T COG4988         399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL-  477 (559)
T ss_pred             eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE-
Confidence            1110       01111100      0011111111111           11111    244567778899999999888 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                       +++|||+..++.+..+.+-+.+
T Consensus       478 -~llDEpTA~LD~etE~~i~~~l  499 (559)
T COG4988         478 -LLLDEPTAHLDAETEQIILQAL  499 (559)
T ss_pred             -EEecCCccCCCHhHHHHHHHHH
Confidence             8999999999888765544443

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.72  E-value=2e-17  Score=157.99  Aligned_cols=150  Identities=17%  Similarity=0.151  Sum_probs=105.3

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-cccccC-CC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDL-SF  151 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-~~~~~~-~~  151 (234)
                      .++++++|+++.|++.++++++||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+ |.++.- ...... .+
T Consensus       317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~-~~~~~i~y~~q~~~~l  394 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-ADSGRIHC-GTKLEVAYFDQHRAEL  394 (635)
T ss_pred             CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEE-CCCcEEEEEeCccccc
Confidence            347999999999998889999999999999999999999999999999999988 89999998 443211 000000 00


Q ss_pred             Chh-hHHHHHHH----------HHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026725          152 KAE-DRVENIRR----------IGEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (234)
Q Consensus       152 ~~~-~~~~~~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~  214 (234)
                      .+. ...+.+..          ...+...+..+++      ..+..++.+.+++...++.++..+.+  +++|||++.|+
T Consensus       395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l--LlLDEPt~~LD  472 (635)
T PRK11147        395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL--LILDEPTNDLD  472 (635)
T ss_pred             CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCC
Confidence            000 01111110          0011222222222      12234556667777889999999998  89999999999


Q ss_pred             hcchhhHHHHHHc
Q 026725          215 ARDPKGLYKLARE  227 (234)
Q Consensus       215 ~R~~~~l~~~~~~  227 (234)
                      ......+.+.+++
T Consensus       473 ~~~~~~l~~~l~~  485 (635)
T PRK11147        473 VETLELLEELLDS  485 (635)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888888775

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.72  E-value=2.7e-17  Score=157.14  Aligned_cols=149  Identities=14%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----c-cccCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L-NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~-~~~~~  150 (234)
                      +++++|+++.|++..+++|+||++++|++++|+||||||||||+|+|+|++. |++|+|.++|......    . ....+
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~~~~~l~q~~~~~~~~   81 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDLIVARLQQDPPRNVEG   81 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence            5789999999999899999999999999999999999999999999999888 8999999987421100    0 00001


Q ss_pred             CChhhHH--------------------------HHHHHH----------------HHHHHHHHhcCc---eEEEecCccc
Q 026725          151 FKAEDRV--------------------------ENIRRI----------------GEVAKLFADAGV---ICIACLISPY  185 (234)
Q Consensus       151 ~~~~~~~--------------------------~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~  185 (234)
                      +..+...                          +.+...                ..+..++...++   ..+..++.+.
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe  161 (635)
T PRK11147         82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW  161 (635)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence            1111000                          000000                011112222222   1223345666


Q ss_pred             HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++....++.++..+.+  +++|||++.|+......+.+.+++
T Consensus       162 kqRv~LAraL~~~P~l--LLLDEPt~~LD~~~~~~L~~~L~~  201 (635)
T PRK11147        162 LRKAALGRALVSNPDV--LLLDEPTNHLDIETIEWLEGFLKT  201 (635)
T ss_pred             HHHHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHh
Confidence            7778899999999999  899999999988888777777764

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.72  E-value=3.8e-17  Score=128.63  Aligned_cols=139  Identities=17%  Similarity=0.184  Sum_probs=102.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh-
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-  155 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~-  155 (234)
                      ++++++++.||..+++.|++|+-++|+.++++||||+|||||+|.|+-+.. |.+|+..+-|.....      +-.+.+ 
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~------s~~~~~k   75 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDF------SKTPSDK   75 (242)
T ss_pred             eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEeccccccc------ccCccHH
Confidence            678999999999999999999999999999999999999999999998666 999999998765431      122222 


Q ss_pred             HHHHHHHHHHHHHHHHhcCceEEEec-------------------------------------------CcccHHHHHHH
Q 026725          156 RVENIRRIGEVAKLFADAGVICIACL-------------------------------------------ISPYRKDRDAC  192 (234)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~  192 (234)
                      ....+++  .++++||.+.+.+....                                           +.+..++..++
T Consensus        76 ~i~~lr~--~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia  153 (242)
T COG4161          76 AIRDLRR--NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA  153 (242)
T ss_pred             HHHHHHH--hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence            1122332  78888988776543211                                           12234455778


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++++-.+.+  +++|+|+..|+..-.....+-++
T Consensus       154 ralmmkpqv--llfdeptaaldpeitaqvv~iik  185 (242)
T COG4161         154 RALMMEPQV--LLFDEPTAALDPEITAQIVSIIK  185 (242)
T ss_pred             HHHhcCCcE--EeecCcccccCHHHHHHHHHHHH
Confidence            888888887  89999999996555444444444

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.72  E-value=4.7e-17  Score=137.53  Aligned_cols=141  Identities=16%  Similarity=0.148  Sum_probs=96.7

Q ss_pred             eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh-h-----
Q 026725           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA-E-----  154 (234)
Q Consensus        84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~-~-----  154 (234)
                      +.|+.+++++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++....   ...+++.+ +     
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  107 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence            56778889999999999999999999999999999999999988 89999999998643110   00111110 0     


Q ss_pred             ---hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026725          155 ---DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (234)
Q Consensus       155 ---~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~  214 (234)
                         ...+++...            ..+...+...++..     ...++.+.++....++.++..+.+  +++|||+..++
T Consensus       108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD  185 (236)
T cd03267         108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI--LFLDEPTIGLD  185 (236)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCC
Confidence               011111100            01112222222211     122345556667888999999988  89999999998


Q ss_pred             hcchhhHHHHHHc
Q 026725          215 ARDPKGLYKLARE  227 (234)
Q Consensus       215 ~R~~~~l~~~~~~  227 (234)
                      ....+.+++.+++
T Consensus       186 ~~~~~~l~~~l~~  198 (236)
T cd03267         186 VVAQENIRNFLKE  198 (236)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=99.72  E-value=1.5e-17  Score=144.68  Aligned_cols=135  Identities=57%  Similarity=0.995  Sum_probs=121.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      --+|..+++.|.||+||||+.-+|...+..-+--.+.+||++++..++..++++++++.+++++++.++.+|.+.++..+
T Consensus        47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvci  126 (627)
T KOG4238|consen   47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCI  126 (627)
T ss_pred             CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceee
Confidence            34789999999999999999988888776334455789999999999888999999999999999999999999999999


Q ss_pred             EecCcccHHHHHHHHHhCCCCCc--eEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          179 ACLISPYRKDRDACRSMLPEGDF--IEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       179 ~~~~~~~~~~~~~~~~ll~~~~l--~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      ..|..+..++|.-++.+-+..++  .+++.+.|.++|.+||+++||+++|+|+|.||
T Consensus       127 tsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gf  183 (627)
T KOG4238|consen  127 TSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGF  183 (627)
T ss_pred             ehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccc
Confidence            99999999999888888665554  57899999999999999999999999999987

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.72  E-value=1.2e-17  Score=171.29  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=104.5

Q ss_pred             cceeeceeeecC---CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----------------------
Q 026725           76 VAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----------------------  129 (234)
Q Consensus        76 ~~~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----------------------  129 (234)
                      -++++||+|+|.   +.++++|+||++++|+.++|+|+||||||||+++|+|++. |                       
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd-p~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD-LKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC-Cccccccccccccccccccccccc
Confidence            488999999995   3579999999999999999999999999999999999998 6                       


Q ss_pred             -------------------------------CccEEEEcCccccccc----cccCCCChhhH-------HHHHHH-----
Q 026725          130 -------------------------------GKLTYILDGDNCRHGL----NRDLSFKAEDR-------VENIRR-----  162 (234)
Q Consensus       130 -------------------------------~~G~i~~~g~~v~~~~----~~~~~~~~~~~-------~~~~~~-----  162 (234)
                                                     .+|+|++||.|++...    ...+++.+++.       ++++.+     
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence                                           6899999999986411    11122222210       111110     


Q ss_pred             -------HHHHH---HHHHh-c-Cc-eEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          163 -------IGEVA---KLFAD-A-GV-ICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       163 -------~~~~~---~~~~~-~-~~-~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                             ....+   ..... + +. ..+    ..++.+.+++-.+||+++..+.+  +++|||++.|+....+.+.+.+
T Consensus      1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~I--LLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI--LLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHHHH
Confidence                   00000   00000 0 00 011    12345667888999999999999  8999999999888888887776


Q ss_pred             Hc
Q 026725          226 RE  227 (234)
Q Consensus       226 ~~  227 (234)
                      .+
T Consensus      1402 ~~ 1403 (1466)
T PTZ00265       1402 VD 1403 (1466)
T ss_pred             HH
Confidence            54

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.72  E-value=3e-17  Score=151.57  Aligned_cols=150  Identities=17%  Similarity=0.180  Sum_probs=103.4

Q ss_pred             ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc--C
Q 026725           75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD--L  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~--~  149 (234)
                      ++++++|+++.|++   +.+++++||++.+|++++|+||||||||||+++|+|+++ |.+|+|.++|.+........  .
T Consensus        20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~~i~~~~~l~~   98 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAALIAISSGLNG   98 (549)
T ss_pred             ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCceEEEECCEeeeEEeccccCC
Confidence            46889999999976   468999999999999999999999999999999999988 89999999997521100000  0


Q ss_pred             CCChhhHHHHHH--------HH-HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026725          150 SFKAEDRVENIR--------RI-GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA  215 (234)
Q Consensus       150 ~~~~~~~~~~~~--------~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~  215 (234)
                      .++..+......        .. ..+...+...++     .....++.+.+++...+++++..+.+  +++|||+..|+.
T Consensus        99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L--LLLDEPTsgLD~  176 (549)
T PRK13545         99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI--LVIDEALSVGDQ  176 (549)
T ss_pred             CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCcccCCH
Confidence            011111100000        00 011112222222     12234556667777889999999988  899999999988


Q ss_pred             cchhhHHHHHHc
Q 026725          216 RDPKGLYKLARE  227 (234)
Q Consensus       216 R~~~~l~~~~~~  227 (234)
                      .....+++.+++
T Consensus       177 ~sr~~LlelL~e  188 (549)
T PRK13545        177 TFTKKCLDKMNE  188 (549)
T ss_pred             HHHHHHHHHHHH
Confidence            877777777753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.72  E-value=2.7e-17  Score=156.79  Aligned_cols=150  Identities=18%  Similarity=0.137  Sum_probs=104.0

Q ss_pred             cccceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc------
Q 026725           74 STVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------  143 (234)
Q Consensus        74 ~~~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~------  143 (234)
                      .++++++|+++.|+    ..++++|+||++++||+++|+|+||||||||+|+|+|++. |.+|+|.++|.++..      
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~   88 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVI   88 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEecccccccc
Confidence            35799999999996    3579999999999999999999999999999999999998 899999998853310      


Q ss_pred             -----------cc-cccCCCChhh----------HHHHHHHH-------------HHHHHHHHhcCce--------EEEe
Q 026725          144 -----------GL-NRDLSFKAED----------RVENIRRI-------------GEVAKLFADAGVI--------CIAC  180 (234)
Q Consensus       144 -----------~~-~~~~~~~~~~----------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~  180 (234)
                                 .. ...+++..++          ..+++...             ..+..++...++.        ....
T Consensus        89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~  168 (623)
T PRK10261         89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ  168 (623)
T ss_pred             ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence                       00 0011211111          11111100             1122233333331        1233


Q ss_pred             cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       181 ~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++.+.+++..++++++..+.+  +++|||+..|+......+++.++
T Consensus       169 LSgGq~QRv~iA~AL~~~P~l--LllDEPt~~LD~~~~~~l~~ll~  212 (623)
T PRK10261        169 LSGGMRQRVMIAMALSCRPAV--LIADEPTTALDVTIQAQILQLIK  212 (623)
T ss_pred             CCHHHHHHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHHHHH
Confidence            456677788899999999998  89999999998777666766655

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=2.2e-17  Score=157.80  Aligned_cols=149  Identities=14%  Similarity=0.085  Sum_probs=105.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-ccccccccc--CCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD--LSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~--~~~  151 (234)
                      ++++++|+++.|++..+++|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+++. .+.. ....  ..+
T Consensus       311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~igy-~~Q~~~~~l  388 (638)
T PRK10636        311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKGIKLGY-FAQHQLEFL  388 (638)
T ss_pred             ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCCEEEEE-ecCcchhhC
Confidence            47999999999998899999999999999999999999999999999999988 89999998642 2211 0000  001


Q ss_pred             Chh-hHHHHHHH------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          152 KAE-DRVENIRR------IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       152 ~~~-~~~~~~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      .+. .....+..      -..+..++..+++.      .+..++.+.+++...++.++..+++  +++|+|+..|+....
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l--LlLDEPt~~LD~~~~  466 (638)
T PRK10636        389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL--LLLDEPTNHLDLDMR  466 (638)
T ss_pred             CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHH
Confidence            111 01111100      00122223333321      2234556667778889999999998  899999999988888


Q ss_pred             hhHHHHHHc
Q 026725          219 KGLYKLARE  227 (234)
Q Consensus       219 ~~l~~~~~~  227 (234)
                      ..+++.+++
T Consensus       467 ~~l~~~L~~  475 (638)
T PRK10636        467 QALTEALID  475 (638)
T ss_pred             HHHHHHHHH
Confidence            888888775

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.71  E-value=8e-17  Score=150.58  Aligned_cols=148  Identities=16%  Similarity=0.159  Sum_probs=100.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEc------------------
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD------------------  137 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~------------------  137 (234)
                      ++++|+++.|+++.+++++||++.+|++++|+||||||||||+|+|+|++. .|++|+|.++                  
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~   80 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE   80 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence            467899999988889999999999999999999999999999999999862 3899999987                  


Q ss_pred             -----Ccccc-------c-------cccccCCCChh---------hHHHHHHH------------HHHHHHHHHhcCce-
Q 026725          138 -----GDNCR-------H-------GLNRDLSFKAE---------DRVENIRR------------IGEVAKLFADAGVI-  176 (234)
Q Consensus       138 -----g~~v~-------~-------~~~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~-  176 (234)
                           |.++.       .       .....+++.++         ...+.+..            ...+..++...++. 
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  160 (520)
T TIGR03269        81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH  160 (520)
T ss_pred             ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                 22210       0       00001111111         01111110            00122223333321 


Q ss_pred             ----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          177 ----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       177 ----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                          ....++.+.+++...+++++..+.+  +++|||++.|+......+++.++
T Consensus       161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  212 (520)
T TIGR03269       161 RITHIARDLSGGEKQRVVLARQLAKEPFL--FLADEPTGTLDPQTAKLVHNALE  212 (520)
T ss_pred             hhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEeeCCcccCCHHHHHHHHHHHH
Confidence                1233455667778889999999998  89999999998888888766554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.71  E-value=4.1e-17  Score=130.78  Aligned_cols=67  Identities=22%  Similarity=0.233  Sum_probs=59.5

Q ss_pred             ccceeeceeeecCC---------ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           75 TVAKSTNILWHKNS---------VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ++++++|+++.|..         ..+++.|||++++|+.++|+|.||||||||+|+|+|+++ |++|+|+++|+.+.
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG~il~n~~~L~   78 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLH   78 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCceEEECCcccc
Confidence            46778888877632         468999999999999999999999999999999999998 99999999998764

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.71  E-value=2.4e-17  Score=155.32  Aligned_cols=149  Identities=14%  Similarity=0.112  Sum_probs=104.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-cccccccc-----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD-----  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~-----  148 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+++.. +. ....+     
T Consensus       323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~-~v~q~~~~~~  400 (556)
T PRK11819        323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-PDSGTIKIGETVKLA-YVDQSRDALD  400 (556)
T ss_pred             eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEE-EEeCchhhcC
Confidence            47999999999998889999999999999999999999999999999999988 899999985421 11 00000     


Q ss_pred             CCCChhhHHHH-HH------HHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026725          149 LSFKAEDRVEN-IR------RIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA  215 (234)
Q Consensus       149 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~  215 (234)
                      ..++..+.... ..      .-......+..+++.      ....++.+.++....++.++..+.+  +++|||+..|+.
T Consensus       401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD~  478 (556)
T PRK11819        401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV--LLLDEPTNDLDV  478 (556)
T ss_pred             CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCH
Confidence            00111111000 00      000011122223321      1233456667777889999999999  899999999998


Q ss_pred             cchhhHHHHHHc
Q 026725          216 RDPKGLYKLARE  227 (234)
Q Consensus       216 R~~~~l~~~~~~  227 (234)
                      .....+++.+++
T Consensus       479 ~~~~~l~~~l~~  490 (556)
T PRK11819        479 ETLRALEEALLE  490 (556)
T ss_pred             HHHHHHHHHHHh
Confidence            888999888875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.71  E-value=8e-17  Score=150.57  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=103.6

Q ss_pred             ccceeeceeeecC-----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc-Ccc---cccc-
Q 026725           75 TVAKSTNILWHKN-----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN---CRHG-  144 (234)
Q Consensus        75 ~~~~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~-g~~---v~~~-  144 (234)
                      ++++++|+++.|+     ...+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|+++ |.+   +... 
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~  356 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPG  356 (520)
T ss_pred             ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccc
Confidence            4799999999994     2579999999999999999999999999999999999988 899999995 532   1110 


Q ss_pred             ------ccccCCCChhh--------HHHHHHH-----------HHHHHHHHHhcCceE----------EEecCcccHHHH
Q 026725          145 ------LNRDLSFKAED--------RVENIRR-----------IGEVAKLFADAGVIC----------IACLISPYRKDR  189 (234)
Q Consensus       145 ------~~~~~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  189 (234)
                            ....+++.+++        ..+++..           -..+...+..+++..          ...++.+.+++.
T Consensus       357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv  436 (520)
T TIGR03269       357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV  436 (520)
T ss_pred             hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence                  00011111111        1111110           001222233333321          123455667777


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+++++..+.+  +++|||+..|+......+++.++
T Consensus       437 ~laral~~~p~l--LllDEPt~~LD~~~~~~l~~~l~  471 (520)
T TIGR03269       437 ALAQVLIKEPRI--VILDEPTGTMDPITKVDVTHSIL  471 (520)
T ss_pred             HHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            889999999988  89999999999888888888774

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.70  E-value=1.8e-17  Score=141.11  Aligned_cols=142  Identities=14%  Similarity=0.208  Sum_probs=92.3

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCCCCh
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLSFKA  153 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~~~~  153 (234)
                      +++|+++.    .+++++||++++|++++|+|+||||||||+++|+|+++ + +|+|.++|+++.....    ..+++.+
T Consensus         2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~   75 (248)
T PRK03695          2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLS   75 (248)
T ss_pred             cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEec
Confidence            35666664    27999999999999999999999999999999999875 4 8999999987642110    0011111


Q ss_pred             hh--------HHHHHHHH-----------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC-------CCCce
Q 026725          154 ED--------RVENIRRI-----------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP-------EGDFI  202 (234)
Q Consensus       154 ~~--------~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~-------~~~l~  202 (234)
                      ++        ..+++...           ..+...+...++.     ....++.+.++....+++++.       .+.+ 
T Consensus        76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l-  154 (248)
T PRK03695         76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL-  154 (248)
T ss_pred             ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE-
Confidence            11        11111100           0111222222221     112334555666778888875       4566 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..++......+++.+++
T Consensus       155 -lllDEPt~~LD~~~~~~l~~~L~~  178 (248)
T PRK03695        155 -LLLDEPMNSLDVAQQAALDRLLSE  178 (248)
T ss_pred             -EEEcCCcccCCHHHHHHHHHHHHH
Confidence             899999999988888888777654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.70  E-value=9.1e-17  Score=151.27  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=104.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-ccccccccc-----
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD-----  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~-----  148 (234)
                      ++++++|+++.|++..+++++||++++|++++|+||||||||||+++|+|+++ |++|+|++++. .+.. ...+     
T Consensus       321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~i~~-v~q~~~~~~  398 (552)
T TIGR03719       321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-PDSGTIKIGETVKLAY-VDQSRDALD  398 (552)
T ss_pred             eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEECCceEEEE-EeCCccccC
Confidence            57999999999998889999999999999999999999999999999999988 89999998542 1110 0000     


Q ss_pred             CCCChhhHHHH-HH------HHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026725          149 LSFKAEDRVEN-IR------RIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA  215 (234)
Q Consensus       149 ~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~  215 (234)
                      ..++..+.... ..      .-......+..+++.      ....++.+.++....++.++..+.+  +++|||+..|+.
T Consensus       399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l--llLDEPt~~LD~  476 (552)
T TIGR03719       399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV--LLLDEPTNDLDV  476 (552)
T ss_pred             CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCH
Confidence            00111111000 00      000011122223321      1234456677778899999999998  899999999998


Q ss_pred             cchhhHHHHHHc
Q 026725          216 RDPKGLYKLARE  227 (234)
Q Consensus       216 R~~~~l~~~~~~  227 (234)
                      .....+++.+++
T Consensus       477 ~~~~~l~~~l~~  488 (552)
T TIGR03719       477 ETLRALEEALLE  488 (552)
T ss_pred             HHHHHHHHHHHH
Confidence            888888888875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.70  E-value=2.8e-17  Score=153.98  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=105.5

Q ss_pred             ccceeeceeeecC-----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           75 TVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        75 ~~~~~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ++++++|+++.|+           ++.+++++||++++|++++|+||||||||||+|+|+|++  |.+|+|+++|+++..
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~~~G~i~~~g~~i~~  351 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHN  351 (529)
T ss_pred             CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--CCCcEEEECCEEccc
Confidence            4789999999995           357999999999999999999999999999999999987  478999999987642


Q ss_pred             cc-------cccCCCChhh----------HHHHHHHH--------------HHHHHHHHhcCce------EEEecCcccH
Q 026725          144 GL-------NRDLSFKAED----------RVENIRRI--------------GEVAKLFADAGVI------CIACLISPYR  186 (234)
Q Consensus       144 ~~-------~~~~~~~~~~----------~~~~~~~~--------------~~~~~~~~~~~~~------~~~~~~~~~~  186 (234)
                      ..       ...+++.+++          ..+++...              ..+...+..+++.      ....++.+.+
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence            10       1112222211          11111100              0112223333331      1233455667


Q ss_pred             HHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          187 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       187 ~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++...+++++..+.+  +++|||+..|+......+++.+++
T Consensus       432 qrv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        432 QRIAIARALILKPSL--IILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             HHHHHHHHHhCCCCE--EEeeCCccccCHHHHHHHHHHHHH
Confidence            778889999999988  899999999998888888888763

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.70  E-value=2.2e-17  Score=158.07  Aligned_cols=149  Identities=19%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------  145 (234)
                      +++++|++++|++    ..+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++....      
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-PTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEcCcCCHHHHHH
Confidence            6889999999953    469999999999999999999999999999999999998 89999999998865310      


Q ss_pred             --cccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCC
Q 026725          146 --NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       146 --~~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~  198 (234)
                        ...+++..++        ..+++..            .......+...++.     ....++.+.++....+++++..
T Consensus        83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence              0111111110        0111110            00112222222221     1123445566677889999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||+..++....+.+.+.+++
T Consensus       163 P~l--LllDEP~~gLD~~s~~~l~~ll~~  189 (648)
T PRK10535        163 GQV--ILADEPTGALDSHSGEEVMAILHQ  189 (648)
T ss_pred             CCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence            988  899999999998888887777653

>PLN03211 ABC transporter G-25; Provisional

Probab=99.70  E-value=4.4e-17  Score=155.95  Aligned_cols=147  Identities=19%  Similarity=0.180  Sum_probs=103.1

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCccccccccccCCCChhh
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      ..+|+++.|+++.+++|+|+++++||+++|+||||||||||+++|+|+++ |+  +|+|.++|+++.......+++.+++
T Consensus        70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-~~~~sG~I~inG~~~~~~~~~~i~yv~Q~  148 (659)
T PLN03211         70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-GNNFTGTILANNRKPTKQILKRTGFVTQD  148 (659)
T ss_pred             ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEEEECCEECchhhccceEEECcc
Confidence            35678889988999999999999999999999999999999999999887 64  8999999987632111111111111


Q ss_pred             --------HHHHHHH---------------HHHHHHHHHhcCceE----------EEecCcccHHHHHHHHHhCCCCCce
Q 026725          156 --------RVENIRR---------------IGEVAKLFADAGVIC----------IACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       156 --------~~~~~~~---------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                              ..+.+..               ...+..++...++..          ...++.+.+++...+++++..+.+ 
T Consensus       149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i-  227 (659)
T PLN03211        149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL-  227 (659)
T ss_pred             cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE-
Confidence                    1111111               001222333333321          112455667778899999999988 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..|+......+.+.+++
T Consensus       228 -LlLDEPtsgLD~~~~~~l~~~L~~  251 (659)
T PLN03211        228 -LILDEPTSGLDATAAYRLVLTLGS  251 (659)
T ss_pred             -EEEeCCCCCcCHHHHHHHHHHHHH
Confidence             899999999988888877777663

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.70  E-value=7.9e-17  Score=131.98  Aligned_cols=121  Identities=19%  Similarity=0.219  Sum_probs=89.2

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHH
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA  167 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (234)
                      .+++++++|++|.+|+++.|+|-||||||||++.|+|-+. |++|.|.++|.|+++       ++...++.      .++
T Consensus        18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk-------~~~~~RA~------~la   83 (263)
T COG1101          18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTK-------KSVAKRAN------LLA   83 (263)
T ss_pred             HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceeccc-------CCHHHHhh------HHH
Confidence            4579999999999999999999999999999999999998 999999999999985       45554443      233


Q ss_pred             HHHHhcCc----------------------------------------------------eEEEecCcccHHHHHHHHHh
Q 026725          168 KLFADAGV----------------------------------------------------ICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       168 ~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~l  195 (234)
                      .+||++..                                                    ..+..++.+.++....+.+.
T Consensus        84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt  163 (263)
T COG1101          84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT  163 (263)
T ss_pred             HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence            33443321                                                    01111233444555566777


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHH
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~  224 (234)
                      +..+.+  +++||-+..|+++...-+.++
T Consensus       164 l~~pki--LLLDEHTAALDPkta~~vm~l  190 (263)
T COG1101         164 LHPPKI--LLLDEHTAALDPKTAEFVMEL  190 (263)
T ss_pred             cCCCcE--EEecchhhcCCcchHHHHHHH
Confidence            777777  899999999977766555443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.70  E-value=6.6e-17  Score=138.30  Aligned_cols=144  Identities=19%  Similarity=0.212  Sum_probs=95.7

Q ss_pred             eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE-----------EcCcccccccc-
Q 026725           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGLN-  146 (234)
Q Consensus        80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~-----------~~g~~v~~~~~-  146 (234)
                      .+++++|+.. .+++|+|+ +.+|++++|+||||||||||+++|+|+++ |++|+|.           ++|.++..... 
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHH
Confidence            4688999765 59999994 99999999999999999999999999998 9999996           77877642100 


Q ss_pred             -----ccCCCChhh-----------HHHHHH---HHHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026725          147 -----RDLSFKAED-----------RVENIR---RIGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       147 -----~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                           ..+++..+.           ....+.   .-..+..++...++..     ...++.+.++....++.++..+.+ 
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i-  160 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF-  160 (255)
T ss_pred             hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE-
Confidence                 000010000           000000   0011222233333221     122344556677888999998888 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|+|+..++....+.+++.+++
T Consensus       161 -lllDEPts~LD~~~~~~l~~~l~~  184 (255)
T cd03236         161 -YFFDEPSSYLDIKQRLNAARLIRE  184 (255)
T ss_pred             -EEEECCCCCCCHHHHHHHHHHHHH
Confidence             899999999988877777766653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.70  E-value=6.7e-17  Score=150.11  Aligned_cols=147  Identities=18%  Similarity=0.232  Sum_probs=103.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.+  ..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....     ...+
T Consensus       249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i  325 (491)
T PRK10982        249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGF  325 (491)
T ss_pred             cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCC
Confidence            478999999874  468999999999999999999999999999999999998 89999999998774211     0112


Q ss_pred             CCChhhHH----------------HHHHHH-------------HHHHHHHHhcCc------eEEEecCcccHHHHHHHHH
Q 026725          150 SFKAEDRV----------------ENIRRI-------------GEVAKLFADAGV------ICIACLISPYRKDRDACRS  194 (234)
Q Consensus       150 ~~~~~~~~----------------~~~~~~-------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  194 (234)
                      ++.++++.                ..+...             ..+...+...++      .....++.+.++....++.
T Consensus       326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  405 (491)
T PRK10982        326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW  405 (491)
T ss_pred             EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence            22222110                000000             001111122121      1223345666777788899


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++..+.+  +++|||+..++......+++.++
T Consensus       406 l~~~p~i--llLDEPt~gLD~~~~~~~~~~l~  435 (491)
T PRK10982        406 LLTQPEI--LMLDEPTRGIDVGAKFEIYQLIA  435 (491)
T ss_pred             HhcCCCE--EEEcCCCcccChhHHHHHHHHHH
Confidence            9999998  89999999999999988888774

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.70  E-value=1.3e-16  Score=134.30  Aligned_cols=133  Identities=22%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc------cccCCCCh-hhHHHHHHHH-
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKA-EDRVENIRRI-  163 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~------~~~~~~~~-~~~~~~~~~~-  163 (234)
                      ++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|+++....      .....+.+ ....+++... 
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~   79 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV   79 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence            478999999999999999999999999999999998 89999999998864311      00000000 0111111100 


Q ss_pred             -------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          164 -------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       164 -------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                                   ..+...+..+++.     ....++.+.++....++.++..+.+  +++|||+..++....+.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184        80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV--LLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHHHHH
Confidence                         0112222222321     1123455667777889999999988  8999999999988888888777


Q ss_pred             Hc
Q 026725          226 RE  227 (234)
Q Consensus       226 ~~  227 (234)
                      ++
T Consensus       158 ~~  159 (230)
T TIGR01184       158 MQ  159 (230)
T ss_pred             HH
Confidence            54

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.70  E-value=1.4e-17  Score=134.50  Aligned_cols=68  Identities=13%  Similarity=0.164  Sum_probs=64.2

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC-ccccc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRH  143 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g-~~v~~  143 (234)
                      +++++++++.+|++..+++++||++.+||.-+|+|||||||||++..|+|..+ |+.|+++++| .+++.
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~   72 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTK   72 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhcc
Confidence            47889999999999999999999999999999999999999999999999888 8999999999 77764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.69  E-value=1e-17  Score=173.93  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=109.2

Q ss_pred             ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccC
Q 026725           75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~  149 (234)
                      .+++++|+++.|++  +.+++|+||+|++||+++|+||||||||||+|+|+|++. |++|+|+++|+++....   ...+
T Consensus      1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257      1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred             ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhE
Confidence            47899999999985  579999999999999999999999999999999999998 99999999998874211   1112


Q ss_pred             CCChhh--------HHHHHHHHH------------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          150 SFKAED--------RVENIRRIG------------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++.++.        ..+++....            .+...+...++.     ....++.+.++....+++++..+.+  +
T Consensus      2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V--L 2092 (2272)
T TIGR01257      2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL--V 2092 (2272)
T ss_pred             EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            222221        111111100            111223333331     1233455667777889999999998  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..++...++.+++.+++
T Consensus      2093 LLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2093 LLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.69  E-value=1.6e-17  Score=171.15  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=105.2

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|.+  .++|+|+||+|++||.++|+|+||||||||+++|.|+++ |++|+|.+||.|+....    ...+
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCceEEECCEEhhhCCHHHHHhhc
Confidence            5889999999953  479999999999999999999999999999999999998 99999999999986411    0011


Q ss_pred             CCChh----------------------hHHHHHHHHHHHHHHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE----------------------DRVENIRRIGEVAKLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~----------------------~~~~~~~~~~~~~~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+|                      +..+..+.. ........ + ++- .+    ..++.+.++.-..+|+++....
T Consensus      1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a-~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232       1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA-HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred             EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHc-CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            11111                      111111110 00011111 1 111 11    1245567778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+.+.+++
T Consensus      1392 I--LILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232       1392 I--LVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred             E--EEEECCcccCCHHHHHHHHHHHHH
Confidence            8  899999999988888878777765

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=8.7e-17  Score=135.78  Aligned_cols=136  Identities=17%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc---c------------cCCCC
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---R------------DLSFK  152 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~---~------------~~~~~  152 (234)
                      ...++.|+||+|++|++++++|+|||||||++|+|+|++. |++|.|.++|.+......   .            .|...
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp  114 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP  114 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence            4568999999999999999999999999999999999999 999999999987542000   0            00011


Q ss_pred             hhhHHHHHHHH------------HHHHHHHHh--cCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          153 AEDRVENIRRI------------GEVAKLFAD--AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       153 ~~~~~~~~~~~------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ..+.....+.+            .....++.-  +-..++-.++.+.+...+.+.+++..+.+  +++|||+-.|+--..
T Consensus       115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V--LfLDEpTvgLDV~aq  192 (325)
T COG4586         115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV--LFLDEPTVGLDVNAQ  192 (325)
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE--EEecCCccCcchhHH
Confidence            00000000000            000000000  00011122233444556788889999988  899999999965555


Q ss_pred             hhHHHHHH
Q 026725          219 KGLYKLAR  226 (234)
Q Consensus       219 ~~l~~~~~  226 (234)
                      ..+..-++
T Consensus       193 ~~ir~Flk  200 (325)
T COG4586         193 ANIREFLK  200 (325)
T ss_pred             HHHHHHHH
Confidence            55554443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.69  E-value=1.6e-16  Score=136.50  Aligned_cols=133  Identities=20%  Similarity=0.166  Sum_probs=88.5

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccC--CCChhhHHHHHHH---
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKAEDRVENIRR---  162 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~--~~~~~~~~~~~~~---  162 (234)
                      .+.+++++||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|+.........+  .++..   +++..   
T Consensus        36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~tv~---enl~~~~~  111 (264)
T PRK13546         36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGEVSVIAISAGLSGQLTGI---ENIEFKML  111 (264)
T ss_pred             ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEeEEecccCCCCCCcHH---HHHHHHHH
Confidence            4568999999999999999999999999999999999998 899999999853110000000  01111   11100   


Q ss_pred             --------H-HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          163 --------I-GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       163 --------~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                              . ..+..+....++.     ....++.+.++....+++++..+.+  +++|+|+..++....+.+++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i--LlLDEPt~gLD~~~~~~l~~~L~  187 (264)
T PRK13546        112 CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI--LVIDEALSVGDQTFAQKCLDKIY  187 (264)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHHHHHHHHHHHH
Confidence                    0 0011111111211     1233455566667788999999988  89999999998777777777664

>PLN03130 ABC transporter C family member; Provisional

Probab=99.69  E-value=1.8e-17  Score=171.31  Aligned_cols=148  Identities=16%  Similarity=0.179  Sum_probs=105.9

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|.+  .++|+|+||+|++||.++|+|+||||||||+++|.|++. |++|+|.+||.|+....    ...+
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhcc
Confidence            5889999999964  369999999999999999999999999999999999998 99999999999986421    0111


Q ss_pred             CCChh----------------------hHHHHHHHHHHHHHHHHh-c-Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE----------------------DRVENIRRIGEVAKLFAD-A-GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~----------------------~~~~~~~~~~~~~~~~~~-~-~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.++                      +..+..+.. ........ + ++- .+    ..++.+.++.-..+|+++....
T Consensus      1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a-~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130       1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERA-HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred             EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHc-CcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence            11111                      111111110 00011111 0 111 11    1345567788899999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+.+.+++
T Consensus      1395 I--LILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130       1395 I--LVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred             E--EEEECCCCCCCHHHHHHHHHHHHH
Confidence            8  899999999988888888777765

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.69  E-value=2.3e-16  Score=136.84  Aligned_cols=145  Identities=17%  Similarity=0.137  Sum_probs=95.3

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~  153 (234)
                      .+.++++|+++.  ...+++++||++++|++++|+|+||||||||+++|+|+++ |.+|+|.++|. +.. ......+.+
T Consensus        37 ~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~-i~y-v~q~~~l~~  111 (282)
T cd03291          37 DNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGR-ISF-SSQFSWIMP  111 (282)
T ss_pred             CCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-EEE-EeCcccccc
Confidence            457889999985  4679999999999999999999999999999999999988 89999999873 210 000000000


Q ss_pred             hhHHHHHH-----------HHHH---HHHHHHhcCce---E----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          154 EDRVENIR-----------RIGE---VAKLFADAGVI---C----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       154 ~~~~~~~~-----------~~~~---~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                      ....+++.           ....   +...+......   .    ...++.+.++....++.++..+.+  +++|+|+..
T Consensus       112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i--LiLDEPt~g  189 (282)
T cd03291         112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGY  189 (282)
T ss_pred             cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECCCcc
Confidence            00011100           0000   00111110000   0    123445566777888999999988  899999999


Q ss_pred             hhhcchhhHHHHH
Q 026725          213 CEARDPKGLYKLA  225 (234)
Q Consensus       213 l~~R~~~~l~~~~  225 (234)
                      ++......+++.+
T Consensus       190 LD~~~~~~l~~~l  202 (282)
T cd03291         190 LDVFTEKEIFESC  202 (282)
T ss_pred             CCHHHHHHHHHHH
Confidence            9887777676543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.68  E-value=1.4e-16  Score=133.93  Aligned_cols=134  Identities=21%  Similarity=0.181  Sum_probs=90.8

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccccc--cccCCCChhhH--------
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHGL--NRDLSFKAEDR--------  156 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~~~--~~~~~~~~~~~--------  156 (234)
                      +++++||++++|++++|+||||||||||+++|+|+++ |    ++|+|.++|+++....  ...+++.+++.        
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            4789999999999999999999999999999999988 7    8999999998764210  01111111110        


Q ss_pred             --HHHH----HH--------HHHHHHHHHhcCce--------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026725          157 --VENI----RR--------IGEVAKLFADAGVI--------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (234)
Q Consensus       157 --~~~~----~~--------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~  214 (234)
                        .+++    ..        ...+...+..+++.        ....++.+.++....+++++..+.+  +++|||+..++
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v--llLDEPt~~LD  157 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF--LIADEPTTDLD  157 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEcCCccccC
Confidence              0000    00        00111222222221        1123455566777889999999988  89999999998


Q ss_pred             hcchhhHHHHHHc
Q 026725          215 ARDPKGLYKLARE  227 (234)
Q Consensus       215 ~R~~~~l~~~~~~  227 (234)
                      ......+++.+++
T Consensus       158 ~~~~~~l~~~l~~  170 (230)
T TIGR02770       158 VVNQARVLKLLRE  170 (230)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888877777664

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.68  E-value=3.4e-17  Score=148.02  Aligned_cols=150  Identities=25%  Similarity=0.235  Sum_probs=105.8

Q ss_pred             ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----cccc
Q 026725           75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~  148 (234)
                      ..+.++++++...  .+++++++||++.+|+.++|+||||||||||+|+|.|... |.+|.|++||-++..-    +...
T Consensus       333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-p~~G~VRLDga~l~qWd~e~lG~h  411 (580)
T COG4618         333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLGRH  411 (580)
T ss_pred             ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc-cCCCcEEecchhhhcCCHHHhccc
Confidence            3678888888764  4579999999999999999999999999999999999998 9999999999988641    1122


Q ss_pred             CCCChhhH-------HHHHHHHHH------H---------HHHHHh-cCc--eEE----EecCcccHHHHHHHHHhCCCC
Q 026725          149 LSFKAEDR-------VENIRRIGE------V---------AKLFAD-AGV--ICI----ACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       149 ~~~~~~~~-------~~~~~~~~~------~---------~~~~~~-~~~--~~~----~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      +||-|++.       .+++.++..      +         -.+... +.-  ..+    ..++.+.+++-..++++...+
T Consensus       412 iGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P  491 (580)
T COG4618         412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP  491 (580)
T ss_pred             cCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence            45554432       233332210      0         000000 000  011    122455677778899999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+  +.+|||.+.|+..-...|...+.+
T Consensus       492 ~l--vVLDEPNsNLD~~GE~AL~~Ai~~  517 (580)
T COG4618         492 FL--VVLDEPNSNLDSEGEAALAAAILA  517 (580)
T ss_pred             cE--EEecCCCCCcchhHHHHHHHHHHH
Confidence            88  899999999987777777776653

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.68  E-value=2.2e-16  Score=151.46  Aligned_cols=150  Identities=14%  Similarity=0.083  Sum_probs=102.3

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~  153 (234)
                      ..++++|+++.|+ +..+++++||++++||+++|+||||||||||+++|+|+++ |.+|+|.+++...-.....+..+..
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~  528 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTL  528 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCC
Confidence            4688999999994 5579999999999999999999999999999999999987 8899998875321100000000000


Q ss_pred             hhHHHHHHH-------------HHHHHHHHHhcCce--------------EEEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          154 EDRVENIRR-------------IGEVAKLFADAGVI--------------CIACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       154 ~~~~~~~~~-------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ....+++..             -..+...+...++.              ....++.+.+++...++.++..+.+  +++
T Consensus       529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i--llL  606 (659)
T TIGR00954       529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF--AIL  606 (659)
T ss_pred             cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            000111100             00111111111110              0123456677788899999999999  899


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      |||++.++....+.+++.+++
T Consensus       607 DEpts~LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       607 DECTSAVSVDVEGYMYRLCRE  627 (659)
T ss_pred             eCCccCCCHHHHHHHHHHHHH
Confidence            999999999888889888876

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.68  E-value=4.7e-17  Score=166.93  Aligned_cols=66  Identities=21%  Similarity=0.276  Sum_probs=60.3

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE-cCcccc
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-DGDNCR  142 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~-~g~~v~  142 (234)
                      .++++|+++.|++   .++++|+||++++|++++|+||||||||||+++|+|++. |++|+|++ +|.++.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~  451 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLK  451 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchh
Confidence            5889999999975   369999999999999999999999999999999999998 99999999 567664

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.67  E-value=1.7e-17  Score=172.18  Aligned_cols=151  Identities=16%  Similarity=0.196  Sum_probs=110.2

Q ss_pred             cccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---ccc
Q 026725           74 STVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRD  148 (234)
Q Consensus        74 ~~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~  148 (234)
                      ...++++|+++.|+  ++.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++....   ...
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhc
Confidence            34789999999995  5789999999999999999999999999999999999998 99999999998874211   011


Q ss_pred             CCCChhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026725          149 LSFKAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++.+++        ..+++...            ..+...+...++..     ...++.+.++....+++++..+.+  
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV-- 1082 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV-- 1082 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence            1111111        11111110            01222333333321     233456667778889999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++...+..+++.+++
T Consensus      1083 LLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257      1083 VVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHH
Confidence            899999999999999988888765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.67  E-value=1.3e-16  Score=148.46  Aligned_cols=145  Identities=20%  Similarity=0.271  Sum_probs=101.6

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++     .+++++||++.+|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....     ...+
T Consensus       256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i  329 (501)
T PRK10762        256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGI  329 (501)
T ss_pred             cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCC
Confidence            4688888874     46999999999999999999999999999999999988 89999999998764211     0112


Q ss_pred             CCChhh-----------HHHHHHH------------------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHH
Q 026725          150 SFKAED-----------RVENIRR------------------IGEVAKLFADAGVI------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       150 ~~~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  194 (234)
                      ++.+++           ..+++..                  ...+...+..+++.      ....++.+.++....++.
T Consensus       330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~a  409 (501)
T PRK10762        330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARG  409 (501)
T ss_pred             EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHH
Confidence            222221           1111100                  00122233333331      123345566777888999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++..+.+  +++|||+..|+....+.+++.+++
T Consensus       410 l~~~p~l--llLDEPt~~LD~~~~~~l~~~l~~  440 (501)
T PRK10762        410 LMTRPKV--LILDEPTRGVDVGAKKEIYQLINQ  440 (501)
T ss_pred             HhhCCCE--EEEcCCCCCCCHhHHHHHHHHHHH
Confidence            9999988  899999999988888887777764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.67  E-value=2.4e-16  Score=131.27  Aligned_cols=134  Identities=16%  Similarity=0.103  Sum_probs=86.2

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE-EcCcccccccccc--CCCChhhHHHHHHHH---
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRD--LSFKAEDRVENIRRI---  163 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~-~~g~~v~~~~~~~--~~~~~~~~~~~~~~~---  163 (234)
                      ++++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|. ++|..+.......  ..++..+........   
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~   79 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL   79 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999999988 8999997 8876542110000  011211111100000   


Q ss_pred             --HHHH-HHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          164 --GEVA-KLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       164 --~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                        .... ......++     ..+..++.+.++....++.++..+.+  +++|||+..++....+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l--lllDEP~~~lD~~~~~~~~~~l~  148 (213)
T PRK15177         80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL--YIADGKLYTGDNATQLRMQAALA  148 (213)
T ss_pred             CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE--EEECCCCccCCHHHHHHHHHHHH
Confidence              0000 00010111     11223445566667889999999988  89999999997777777776553

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.67  E-value=4.9e-17  Score=167.73  Aligned_cols=148  Identities=14%  Similarity=0.073  Sum_probs=106.0

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|.+  ..+|+|+||+|++||.++|+|+||||||||+++|.|++. |++|+|.+||.|+....    ...+
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcC
Confidence            5889999999964  469999999999999999999999999999999999998 99999999999986421    0111


Q ss_pred             CCCh----------------------hhHHHHHHHHHHHHHHHHh--cCce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKA----------------------EDRVENIRRIGEVAKLFAD--AGVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~----------------------~~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.+                      ++..+..+.. ........  .++- .+    ..++.+.++.-..+|+++....
T Consensus      1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a-~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957      1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELA-HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred             eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHc-CcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            1111                      1111111110 00011111  1111 11    2245567788889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+.+.+++
T Consensus      1442 I--LiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957      1442 I--LVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred             E--EEEECCcccCCHHHHHHHHHHHHH
Confidence            8  899999999988888888877765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.67  E-value=4.3e-17  Score=168.15  Aligned_cols=149  Identities=15%  Similarity=0.094  Sum_probs=103.6

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      -++++|++++|.+  ..+|+|+||+|++||.++|+|+||||||||+++|.|++. |.+|+|++||.|+....    ...+
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccCCHHHHHhcc
Confidence            5889999999964  359999999999999999999999999999999999998 99999999999986421    1111


Q ss_pred             CCChhh-------HHHHHHHH-----HHHHHHHHhc-----------Cce-EE----EecCcccHHHHHHHHHhCCC-CC
Q 026725          150 SFKAED-------RVENIRRI-----GEVAKLFADA-----------GVI-CI----ACLISPYRKDRDACRSMLPE-GD  200 (234)
Q Consensus       150 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~-~~----~~~~~~~~~~~~~~~~ll~~-~~  200 (234)
                      ++.+++       .++++...     ..+-......           ++- .+    ..++.+.++.-..+|+++.+ ..
T Consensus      1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence            111111       01111000     0000001100           110 11    22455667778899999985 78


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+.+.+++
T Consensus      1467 I--LlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243       1467 F--ILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            8  899999999988888877777664

>PRK13409 putative ATPase RIL; Provisional

Probab=99.66  E-value=6e-16  Score=146.47  Aligned_cols=148  Identities=15%  Similarity=0.081  Sum_probs=102.9

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----C
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----L  149 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----~  149 (234)
                      .++++++|+++.|++. .++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..+.. ....    .
T Consensus       338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~-~~i~y-~~Q~~~~~~  413 (590)
T PRK13409        338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPE-LKISY-KPQYIKPDY  413 (590)
T ss_pred             ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEe-eeEEE-ecccccCCC
Confidence            3578999999999875 4899999999999999999999999999999999998 899999875 22210 0000    0


Q ss_pred             CCChhhHHHHH-HH---HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhh
Q 026725          150 SFKAEDRVENI-RR---IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       150 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~  220 (234)
                      ..+..+..... ..   -.....++..+++.     ....++.+.++....++.++..+.+  +++|||+..|+......
T Consensus       414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l--lLLDEPt~~LD~~~~~~  491 (590)
T PRK13409        414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL--YLLDEPSAHLDVEQRLA  491 (590)
T ss_pred             CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHH
Confidence            11111111000 00   00111222233321     2234566677788899999999998  89999999999888888


Q ss_pred             HHHHHHc
Q 026725          221 LYKLARE  227 (234)
Q Consensus       221 l~~~~~~  227 (234)
                      +++.+++
T Consensus       492 l~~~l~~  498 (590)
T PRK13409        492 VAKAIRR  498 (590)
T ss_pred             HHHHHHH
Confidence            8887764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.66  E-value=6.5e-16  Score=131.47  Aligned_cols=135  Identities=16%  Similarity=0.104  Sum_probs=88.4

Q ss_pred             cccccceeeec-----CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc---cCCCChhhHHHHH-
Q 026725           90 DKRDRQQLLQQ-----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DLSFKAEDRVENI-  160 (234)
Q Consensus        90 ~~l~~vs~~i~-----~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~---~~~~~~~~~~~~~-  160 (234)
                      ..+.++++++.     +|++++|+||||||||||+++|+|+++ |.+|+|.++|..+......   ....+..+..... 
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~   86 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT   86 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence            45666777665     799999999999999999999999988 8999999998654311100   0111222211100 


Q ss_pred             HHH----HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          161 RRI----GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       161 ~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ...    .....++...++.     ....++.+.++....++.++..+.+  +++|||+..|+......+++.+++
T Consensus        87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l~~  160 (246)
T cd03237          87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI--YLLDEPSAYLDVEQRLMASKVIRR  160 (246)
T ss_pred             hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            000    0011122222221     1123455667777899999999988  899999999988888877776654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03073 ABC transporter F family; Provisional

Probab=99.66  E-value=7.5e-16  Score=148.57  Aligned_cols=150  Identities=11%  Similarity=0.039  Sum_probs=102.7

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc--CCC
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD--LSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~--~~~  151 (234)
                      ++++++|+++.|+ ...+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.+++..-.......  ..+
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~~~~igyv~Q~~~~~l  585 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSAKVRMAVFSQHHVDGL  585 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCceEEECCceeEEEEeccccccC
Confidence            5789999999996 4569999999999999999999999999999999999998 99999998763200000000  001


Q ss_pred             Chhh--HHHHHHH-----HHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          152 KAED--RVENIRR-----IGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       152 ~~~~--~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ....  .......     -..+...+..+++.      ....++.+.++....++.++..+.+  +++|||+..|+....
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l--LLLDEPT~~LD~~s~  663 (718)
T PLN03073        586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI--LLLDEPSNHLDLDAV  663 (718)
T ss_pred             CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHH
Confidence            0000  0000000     00122223333321      2234456667777889999999998  899999999988887


Q ss_pred             hhHHHHHHc
Q 026725          219 KGLYKLARE  227 (234)
Q Consensus       219 ~~l~~~~~~  227 (234)
                      ..+.+.+.+
T Consensus       664 ~~l~~~L~~  672 (718)
T PLN03073        664 EALIQGLVL  672 (718)
T ss_pred             HHHHHHHHH
Confidence            777777664

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.66  E-value=1.8e-15  Score=124.55  Aligned_cols=137  Identities=61%  Similarity=1.005  Sum_probs=110.2

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (234)
                      .-..++|.+++|+|+||||||||++.|++.+...+.|.+.++|++++......+++.++++.++++++..++..+...+.
T Consensus        18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~   97 (198)
T PRK03846         18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGL   97 (198)
T ss_pred             HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCC
Confidence            34458999999999999999999999999876345678999999887544344567788887777777666766666777


Q ss_pred             eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026725          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG  232 (234)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~  232 (234)
                      ..+..+..+.++.++.+++++...++..++++.|.+.+..|+++.+|+..+.+++.+
T Consensus        98 ~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~  154 (198)
T PRK03846         98 VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRN  154 (198)
T ss_pred             EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccC
Confidence            777777777788889999999887776789999999999999888988776665544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.66  E-value=4.6e-16  Score=145.22  Aligned_cols=145  Identities=16%  Similarity=0.206  Sum_probs=102.1

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|++.     .+++++||++++|++++|+||||||||||+|+|+|+++ |.+|+|.++|+++....     ...+
T Consensus       267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i  340 (510)
T PRK15439        267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-ARGGRIMLNGKEINALSTAQRLARGL  340 (510)
T ss_pred             ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEECCCCCHHHHHhCCc
Confidence            4788899884     26999999999999999999999999999999999988 89999999998764210     0112


Q ss_pred             CCChhhH-----------HHHHHH--------------H-HHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCC
Q 026725          150 SFKAEDR-----------VENIRR--------------I-GEVAKLFADAGVI------CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       150 ~~~~~~~-----------~~~~~~--------------~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~  197 (234)
                      ++.+++.           .+++..              . ..+...+..+++.      ....++.+.++....++.++.
T Consensus       341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~  420 (510)
T PRK15439        341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA  420 (510)
T ss_pred             EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence            2222210           011100              0 0111222233321      123445667777888999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..|+....+.+++.+++
T Consensus       421 ~p~l--LlLDEPt~gLD~~~~~~l~~~l~~  448 (510)
T PRK15439        421 SPQL--LIVDEPTRGVDVSARNDIYQLIRS  448 (510)
T ss_pred             CCCE--EEECCCCcCcChhHHHHHHHHHHH
Confidence            9988  899999999999888888887764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3.8e-16  Score=145.41  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=100.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~  150 (234)
                      +++++|++..    .+++++||++++|++++|+||||||||||+|+|+|+++ |.+|+|+++|+++....     ...++
T Consensus       257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~  331 (501)
T PRK11288        257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIM  331 (501)
T ss_pred             EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCE
Confidence            5778888732    58999999999999999999999999999999999998 89999999998764210     00111


Q ss_pred             CChhh-----------HHHHHH-----------------H-HHHHHHHHHhcCc------eEEEecCcccHHHHHHHHHh
Q 026725          151 FKAED-----------RVENIR-----------------R-IGEVAKLFADAGV------ICIACLISPYRKDRDACRSM  195 (234)
Q Consensus       151 ~~~~~-----------~~~~~~-----------------~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l  195 (234)
                      +.+++           ..+++.                 . -..+...+..+++      .....++.+.+++...++.+
T Consensus       332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al  411 (501)
T PRK11288        332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL  411 (501)
T ss_pred             EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence            11111           001100                 0 0011222222332      12234566677788889999


Q ss_pred             CCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       196 l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +..+.+  +++|||+..++......+++.++
T Consensus       412 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  440 (501)
T PRK11288        412 SEDMKV--ILLDEPTRGIDVGAKHEIYNVIY  440 (501)
T ss_pred             ccCCCE--EEEcCCCCCCCHhHHHHHHHHHH
Confidence            999998  89999999998888888887763

>PLN03073 ABC transporter F family; Provisional

Probab=99.66  E-value=5.9e-16  Score=149.27  Aligned_cols=147  Identities=14%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccccccCCC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      ...++++|+++.|++..+++|+||+|.+|++++|+|+||||||||+|+|+|..  ..|.+|+|.+.++++... .    .
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~-~----~  249 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD-D----T  249 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC-C----C
Confidence            34789999999999889999999999999999999999999999999999864  127789997655543210 0    0


Q ss_pred             Ch--------hhHH----HHHHHHH--------------------------------HH----------------HHHHH
Q 026725          152 KA--------EDRV----ENIRRIG--------------------------------EV----------------AKLFA  171 (234)
Q Consensus       152 ~~--------~~~~----~~~~~~~--------------------------------~~----------------~~~~~  171 (234)
                      +.        .++.    +..+.+.                                .+                ..++.
T Consensus       250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~  329 (718)
T PLN03073        250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA  329 (718)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            00        0000    0000000                                00                00111


Q ss_pred             hcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          172 DAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       172 ~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..++      .....++.+.++...+++.++..+.+  +++|||+..|+......+++.+++
T Consensus       330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence            1111      11223445566677888999999998  899999999988888888887765

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.65  E-value=2.9e-16  Score=121.22  Aligned_cols=116  Identities=22%  Similarity=0.317  Sum_probs=78.1

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCCChhh--------HHHH
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFKAED--------RVEN  159 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~~~~~--------~~~~  159 (234)
                      |+++||++++|++++|+|+||||||||+++|+|++. |.+|.|.++|.++....    ...+++.+++        ..+.
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999999999999999999999998 89999999999886410    0011111111        0111


Q ss_pred             HHHHHHHHHHHHhcCc-----eEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          160 IRRIGEVAKLFADAGV-----ICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       160 ~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                       ..-..+..++.....     ..+    ..++.+.++....+++++..+.+  +++|+|++
T Consensus        80 -~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l--lllDEPt~  137 (137)
T PF00005_consen   80 -ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL--LLLDEPTN  137 (137)
T ss_dssp             -HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE--EEEESTTT
T ss_pred             -cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE--EEEeCCCC
Confidence             000012222222221     111    33455667777889999999998  89999974

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=142.16  Aligned_cols=146  Identities=17%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc-cccccccccCCCCh-
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDLSFKA-  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~-~v~~~~~~~~~~~~-  153 (234)
                      +++++|+++.|+++++++++||++.+|+.+||||+||||||||+|+|+|.+. |++|+|...+. .+. .+.++..... 
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~~~G~i~~~~~~~v~-~l~Q~~~~~~~   80 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-PDSGEVTRPKGLRVG-YLSQEPPLDPE   80 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-CCCCeEeecCCceEE-EeCCCCCcCCC
Confidence            6788999999999999999999999999999999999999999999999998 99999988753 221 1111100110 


Q ss_pred             -----------hhHHHHHHHH-------------------------------HHHHHHHHhcCce----EEEecCcccHH
Q 026725          154 -----------EDRVENIRRI-------------------------------GEVAKLFADAGVI----CIACLISPYRK  187 (234)
Q Consensus       154 -----------~~~~~~~~~~-------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~  187 (234)
                                 .+..+..+..                               ..+..++...+..    .+..++.+.+.
T Consensus        81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~  160 (530)
T COG0488          81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR  160 (530)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence                       0000000000                               0112222222221    22444566677


Q ss_pred             HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      +...++.++..+++  +++|||++.|+.....=|-.-+
T Consensus       161 Rv~LA~aL~~~pDl--LLLDEPTNHLD~~~i~WLe~~L  196 (530)
T COG0488         161 RVALARALLEEPDL--LLLDEPTNHLDLESIEWLEDYL  196 (530)
T ss_pred             HHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHH
Confidence            77889999999999  8999999999665554444433

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.65  E-value=1.4e-15  Score=120.67  Aligned_cols=145  Identities=18%  Similarity=0.166  Sum_probs=91.0

Q ss_pred             cceeeceeeec-----CC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc
Q 026725           76 VAKSTNILWHK-----NS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~-----~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~  148 (234)
                      .+.++|+++.|     ++  .++++++||+++.||++++-||||||||||+|+|.+-+. |++|+|.+.-+.-+-.+   
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl---   79 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDL---   79 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhh---
Confidence            35566666655     22  368999999999999999999999999999999999998 99999988643321100   


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHhcCceEE-------------------------------------------EecCccc
Q 026725          149 LSFKAEDRVENIRRIGEVAKLFADAGVICI-------------------------------------------ACLISPY  185 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~  185 (234)
                      ....+.+..+.++.  .++++.|-..+.+-                                           ..|+.+.
T Consensus        80 ~~a~pr~vl~vRr~--TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE  157 (235)
T COG4778          80 VTAEPREVLEVRRT--TIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE  157 (235)
T ss_pred             hccChHHHHHHHHh--hhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence            01233332222221  22222222221111                                           1122233


Q ss_pred             HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcC
Q 026725          186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG  228 (234)
Q Consensus       186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~  228 (234)
                      +++..+++..+....+  +++|+|+..|+..++.-..+.+++-
T Consensus       158 qQRVNIaRgfivd~pI--LLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         158 QQRVNIARGFIVDYPI--LLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             heehhhhhhhhccCce--EEecCCcccccccchHHHHHHHHHH
Confidence            3333444554444444  7899999999999988777777653

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.65  E-value=4.9e-16  Score=152.95  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=103.8

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCC
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK  152 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~  152 (234)
                      -++++|++|.|+.   +++++|+||++++|+.++|+|||||||||.+.+|.+++. |..|.|.+||+|+++       ++
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~-------ln 1058 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKD-------LN 1058 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCccccc-------CC
Confidence            4789999999974   569999999999999999999999999999999999999 999999999999975       33


Q ss_pred             hhhHHHHHHHHHHHHHHHH----------------------------------hcC-c-eEE----EecCcccHHHHHHH
Q 026725          153 AEDRVENIRRIGEVAKLFA----------------------------------DAG-V-ICI----ACLISPYRKDRDAC  192 (234)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~-~-~~~----~~~~~~~~~~~~~~  192 (234)
                      ...+++++..+.|...+|.                                  -+. . ..+    ..++.+.+++-++|
T Consensus      1059 l~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1059 LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred             HHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence            3322221111111111110                                  000 0 001    12345677888999


Q ss_pred             HHhCCCCCceEEEEeCChhhhhhcch---hhHHHHHHcC
Q 026725          193 RSMLPEGDFIEVFMDVPLQVCEARDP---KGLYKLAREG  228 (234)
Q Consensus       193 ~~ll~~~~l~~~~ld~P~~~l~~R~~---~~l~~~~~~~  228 (234)
                      |+++..+.+  +++||.++.|+....   +.-.+++++|
T Consensus      1139 RAilRnPkI--LLLDEATSALDseSErvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1139 RAILRNPKI--LLLDEATSALDSESERVVQEALDRAMEG 1175 (1228)
T ss_pred             HHHHcCCCe--eeeeccchhhhhhhHHHHHHHHHHhhcC
Confidence            999999999  899999999976554   4455555655

>PRK13409 putative ATPase RIL; Provisional

Probab=99.63  E-value=6.7e-16  Score=146.17  Aligned_cols=144  Identities=21%  Similarity=0.236  Sum_probs=100.6

Q ss_pred             eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE-----------EcCccccccc--
Q 026725           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGL--  145 (234)
Q Consensus        80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~-----------~~g~~v~~~~--  145 (234)
                      ++++++||.. .+|++++ .+++|++++|+||||||||||+|+|+|++. |++|+|.           ++|.++....  
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~  154 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKK  154 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence            3588999864 5999999 899999999999999999999999999998 9999997           8888764210  


Q ss_pred             ----cccCCCChh-----------hHHHHHHH---HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          146 ----NRDLSFKAE-----------DRVENIRR---IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       146 ----~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                          ...+++.++           ...+.+..   ...+..++...++.     .+..++.+.++....++.++..+.+ 
T Consensus       155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l-  233 (590)
T PRK13409        155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF-  233 (590)
T ss_pred             HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence                000111111           00111110   01122233333332     1233456677778899999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||++.|+......+++.+++
T Consensus       234 -llLDEPts~LD~~~~~~l~~~i~~  257 (590)
T PRK13409        234 -YFFDEPTSYLDIRQRLNVARLIRE  257 (590)
T ss_pred             -EEEECCCCCCCHHHHHHHHHHHHH
Confidence             899999999988888888887764

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.63  E-value=1.1e-15  Score=134.90  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=62.0

Q ss_pred             cceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           76 VAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        76 ~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      .++.+|+.+.|..+ --+..||++|++||++.|+|.|||||||+++.|.|++. |++|+|++||..+..
T Consensus       322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~  389 (546)
T COG4615         322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSA  389 (546)
T ss_pred             ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCC
Confidence            57889999999766 56889999999999999999999999999999999998 999999999999863

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.63  E-value=7.7e-16  Score=124.67  Aligned_cols=120  Identities=19%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHH
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA  167 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (234)
                      .+.+++++||++++|++++|+||||||||||+|++.+     .+|++.+++..... ....+.+..+  .          
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~-~~~~~~~~~q--~----------   68 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF-SRNKLIFIDQ--L----------   68 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc-ccccEEEEhH--H----------
Confidence            4578999999999999999999999999999999842     47899988763211 0111122222  0          


Q ss_pred             HHHHhcCce------EEEecCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          168 KLFADAGVI------CIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       168 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..+..+++.      ....++.+.++....+++++..  +.+  +++|||+..++....+.+++.+++
T Consensus        69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~l--lLlDEPt~~LD~~~~~~l~~~l~~  134 (176)
T cd03238          69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTL--FILDEPSTGLHQQDINQLLEVIKG  134 (176)
T ss_pred             HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            112222221      1123345566777888999999  888  899999999998888888877664

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=2.8e-15  Score=125.04  Aligned_cols=54  Identities=20%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ....+|+|+||++++||.++|+|+||||||||+|+|+|.++ |++|+|.++|+-.
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~   91 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVA   91 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-CCCceEEEcceEe
Confidence            45679999999999999999999999999999999999998 9999999999753

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.62  E-value=1.2e-15  Score=134.96  Aligned_cols=139  Identities=18%  Similarity=0.236  Sum_probs=98.0

Q ss_pred             CcccceeeceeeecC-----------CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           73 NSTVAKSTNILWHKN-----------SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        73 ~~~~~~~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ..++++++++...|.           ...+++++||++++||.++|+|.||||||||-++|.+++.  +.|+|+|+|+++
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~G~~i  350 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFDGQDI  350 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEECCccc
Confidence            356788888887662           2468999999999999999999999999999999999986  459999999998


Q ss_pred             cccccccCCCChhhHHHHHHHHHHHHHHHHhc-----------------------------------------CceEE--
Q 026725          142 RHGLNRDLSFKAEDRVENIRRIGEVAKLFADA-----------------------------------------GVICI--  178 (234)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~--  178 (234)
                      ..       ++.++.+..++   ++..+||++                                         ++-+.  
T Consensus       351 ~~-------~~~~~mrplR~---~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r  420 (534)
T COG4172         351 DG-------LSRKEMRPLRR---RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR  420 (534)
T ss_pred             cc-------cChhhhhhhhh---hceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh
Confidence            73       33333332222   122223322                                         11111  


Q ss_pred             ----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          179 ----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       179 ----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                          -.|+.+.+++-.++++++-.+.+  +++|||++.|+..-.....+.+
T Consensus       421 ~RYPhEFSGGQRQRIAIARAliLkP~~--i~LDEPTSALD~SVQaQvv~LL  469 (534)
T COG4172         421 NRYPHEFSGGQRQRIAIARALILKPEL--ILLDEPTSALDRSVQAQVLDLL  469 (534)
T ss_pred             hcCCcccCcchhhHHHHHHHHhcCCcE--EEecCCchHhhHHHHHHHHHHH
Confidence                12345566677788888877877  8999999999766555544443

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.62  E-value=1.1e-14  Score=114.92  Aligned_cols=130  Identities=68%  Similarity=1.125  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecCc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (234)
                      +++|+|++||||||+++.|++.+..+....+.++++.++..+....++.++++.+.++.+......+...+...+.....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            47899999999999999999988633445688898888754433445666666666655444444454556666666655


Q ss_pred             ccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       184 ~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      ..+..|..++++++...+..++++.|.+.|.+|+++++|++.+.|.++++
T Consensus        81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~  130 (149)
T cd02027          81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGF  130 (149)
T ss_pred             CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCc
Confidence            56667777888877667777999999999999999999999999998876

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.62  E-value=7.8e-16  Score=136.16  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=99.4

Q ss_pred             cccceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC----CccEEEEcCccccccc
Q 026725           74 STVAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHGL  145 (234)
Q Consensus        74 ~~~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p----~~G~i~~~g~~v~~~~  145 (234)
                      .++++++|++..|.    .+.+++++||++.+||.++|+|+||||||-.+..++++++.+    .+|+|.|+|+++-.  
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~--   81 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA--   81 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc--
Confidence            35889999999996    678999999999999999999999999999999999999742    36899999999863  


Q ss_pred             cccCCCChhhHHHHHHHHHHHHHHHHhcCceEE-----------------------------------------------
Q 026725          146 NRDLSFKAEDRVENIRRIGEVAKLFADAGVICI-----------------------------------------------  178 (234)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  178 (234)
                           .+.++++..++.  .++++||.+....+                                               
T Consensus        82 -----~se~~lr~iRG~--~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y  154 (534)
T COG4172          82 -----ASERQLRGVRGN--KIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAY  154 (534)
T ss_pred             -----CCHHHHhhhccc--ceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence                 444444333322  34444443321100                                               


Q ss_pred             -EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          179 -ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       179 -~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       -.++.+.+++.-++.+++.++++  ++-|||+..|+---...+.+.++
T Consensus       155 PHeLSGGqRQRVMIAMALan~P~l--LIADEPTTALDVtvQaQIL~Ll~  201 (534)
T COG4172         155 PHELSGGQRQRVMIAMALANEPDL--LIADEPTTALDVTVQAQILDLLK  201 (534)
T ss_pred             CcccCcchhhHHHHHHHHcCCCCe--EeecCCcchhhhhhHHHHHHHHH
Confidence             00123334444566777777787  78899999886655555555443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.62  E-value=7.2e-16  Score=158.85  Aligned_cols=147  Identities=14%  Similarity=0.134  Sum_probs=103.8

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~  149 (234)
                      .++++|++++|..  ..+|+|+||+|++||.++|+|+||||||||+++|.|++.  .+|+|++||.|+....    ...+
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhce
Confidence            5889999999963  679999999999999999999999999999999999885  5899999999986421    0111


Q ss_pred             CCChh----------------------hHHHHHHHHHHHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE----------------------DRVENIRRIGEVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.++                      +..+....+ .........  ++- .+    ..++.+.++....+|+++....
T Consensus      1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~-~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271      1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEV-GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred             EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHC-CCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence            11111                      111111110 000111111  111 11    1245567778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+.+.+++
T Consensus      1374 I--LlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271      1374 I--LLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            8  899999999988888888887775

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.62  E-value=1.2e-14  Score=118.21  Aligned_cols=140  Identities=63%  Similarity=1.077  Sum_probs=112.3

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHh
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD  172 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (234)
                      +..+...++|++++|+|++||||||+++.|.+.+..+..+.+.+++++++..+....++..+++..+++.+..+...+..
T Consensus         9 ~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (184)
T TIGR00455         9 ERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVR   88 (184)
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            33445678999999999999999999999999886333457899999987655455567778887777777667777777


Q ss_pred             cCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026725          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG  232 (234)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~  232 (234)
                      .+..++.....+.+..++.+++++....+..++++.|.+.+..|+.+.+|+..+.+.++.
T Consensus        89 ~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~  148 (184)
T TIGR00455        89 NGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKG  148 (184)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccC
Confidence            787777777777788888999888877777789999999999999999998877666554

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.61  E-value=2.8e-15  Score=153.55  Aligned_cols=150  Identities=16%  Similarity=0.204  Sum_probs=103.8

Q ss_pred             cceeeceeeecC----CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCccccccccccC
Q 026725           76 VAKSTNILWHKN----SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~~~~~~  149 (234)
                      +++.+|+++.|+    .+.+|+|+|+++++|++++|+||||||||||+++|+|+++.  +++|+|.++|+++.......+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i  838 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI  838 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence            468899999884    46799999999999999999999999999999999998752  467999999988742211112


Q ss_pred             CCChhh--------HHHHHHHH---------------HHHHHHHHhcCceE-----EE----ecCcccHHHHHHHHHhCC
Q 026725          150 SFKAED--------RVENIRRI---------------GEVAKLFADAGVIC-----IA----CLISPYRKDRDACRSMLP  197 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~~---------------~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~ll~  197 (234)
                      ++.+++        .++.+...               ..+..++...++..     +.    .++.+.+++..++++++.
T Consensus       839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~  918 (1394)
T TIGR00956       839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA  918 (1394)
T ss_pred             eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc
Confidence            222211        11111110               01222233223211     11    245566777788999999


Q ss_pred             CCC-ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGD-FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+. +  +++|||++.|+......+.+.+++
T Consensus       919 ~P~~i--LlLDEPTsgLD~~~~~~i~~~L~~  947 (1394)
T TIGR00956       919 KPKLL--LFLDEPTSGLDSQTAWSICKLMRK  947 (1394)
T ss_pred             CCCeE--EEEcCCCCCCCHHHHHHHHHHHHH
Confidence            986 7  799999999988888777776654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.59  E-value=6.9e-15  Score=123.24  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=85.7

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh----------hHHHHHH-----
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----------DRVENIR-----  161 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~----------~~~~~~~-----  161 (234)
                      |++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ..+++.++          ...+++.     
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~-~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGKGW-RHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchHhh-CcEEEecccccccCCCCccHHHHHHhcccc
Confidence            5789999999999999999999999999988 89999999998752110 00111111          0111100     


Q ss_pred             -----------HHHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          162 -----------RIGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       162 -----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                                 ....+...+...++..     ...++.+.++....++.++..+.+  +++|+|+..++....+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV--LLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence                       0001222233333221     123455566777889999999998  8999999999988888888877


Q ss_pred             Hc
Q 026725          226 RE  227 (234)
Q Consensus       226 ~~  227 (234)
                      ++
T Consensus       157 ~~  158 (223)
T TIGR03771       157 IE  158 (223)
T ss_pred             HH
Confidence            64

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.58  E-value=9.7e-15  Score=135.96  Aligned_cols=149  Identities=16%  Similarity=0.115  Sum_probs=100.0

Q ss_pred             cccceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-cccccC-C
Q 026725           74 STVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GLNRDL-S  150 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-~~~~~~-~  150 (234)
                      ..+++++|+++.|++ +.+++++||.|.+|+.++|+||||+|||||+|+|+|.+. |.+|+|.+.-. +.- ...++. .
T Consensus       319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~-v~igyf~Q~~~~  396 (530)
T COG0488         319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGET-VKIGYFDQHRDE  396 (530)
T ss_pred             CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCc-eEEEEEEehhhh
Confidence            458999999999965 689999999999999999999999999999999999888 88999887532 211 000000 0


Q ss_pred             C-ChhhHHHHHHHH------HHHHHHHHhcCc------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          151 F-KAEDRVENIRRI------GEVAKLFADAGV------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       151 ~-~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      + ......++++..      ..+...+..++.      ..+..++.+.+.+...+.-++..+++  +++|||++.|+--.
T Consensus       397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv--LiLDEPTNhLDi~s  474 (530)
T COG0488         397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL--LLLDEPTNHLDIES  474 (530)
T ss_pred             cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE--EEEcCCCccCCHHH
Confidence            0 000111111110      112222222222      23344555666666677778888999  89999999997666


Q ss_pred             hhhHHHHHH
Q 026725          218 PKGLYKLAR  226 (234)
Q Consensus       218 ~~~l~~~~~  226 (234)
                      ...|-+.+.
T Consensus       475 ~~aLe~aL~  483 (530)
T COG0488         475 LEALEEALL  483 (530)
T ss_pred             HHHHHHHHH
Confidence            666666665

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=8.9e-15  Score=129.98  Aligned_cols=149  Identities=17%  Similarity=0.202  Sum_probs=108.3

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----ccccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~~~  150 (234)
                      .+...|+++.|+ .+++++++||+++.|+.++++|+||+||||+++.|.+++. +.+|.|.+||+|++..    +...++
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg  340 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIG  340 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhC
Confidence            466789999996 5689999999999999999999999999999999999999 9999999999998742    111234


Q ss_pred             CChhhHH-------------------HHHH---HHHHHHHHHHhcC------ceE-EEecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAEDRV-------------------ENIR---RIGEVAKLFADAG------VIC-IACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~~~-------------------~~~~---~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.|++-.                   +...   ...++...++...      +-+ -...+.+.+++..+++.+|+.+.+
T Consensus       341 ~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i  420 (497)
T COG5265         341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI  420 (497)
T ss_pred             cCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE
Confidence            4443321                   0000   0112222222211      111 122355677888999999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++||.++.|+-+..+.+...+++
T Consensus       421 --l~~deatsaldt~te~~iq~~l~~  444 (497)
T COG5265         421 --LILDEATSALDTHTEQAIQAALRE  444 (497)
T ss_pred             --EEEehhhhHhhhhHHHHHHHHHHH
Confidence              899999999998888887777664

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.55  E-value=8.1e-15  Score=124.38  Aligned_cols=125  Identities=17%  Similarity=0.192  Sum_probs=87.8

Q ss_pred             eeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHH
Q 026725           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR  161 (234)
Q Consensus        82 l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~  161 (234)
                      +.+++|+..  -+++|+.+...+++|.|+||||||||+++|+|+++ |+.|.|.++|+-+..... .+..+++.|     
T Consensus         6 ~~~~lG~~~--l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k-~i~lp~~~R-----   76 (352)
T COG4148           6 FRQRLGNFA--LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEK-GIFLPPEKR-----   76 (352)
T ss_pred             hhhhcCceE--EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccC-CcccChhhh-----
Confidence            334444432  36788888878999999999999999999999998 999999999987653111 111222222     


Q ss_pred             HHHHHHHHHHhcCceEEEe------------------------------------cCcccHHHHHHHHHhCCCCCceEEE
Q 026725          162 RIGEVAKLFADAGVICIAC------------------------------------LISPYRKDRDACRSMLPEGDFIEVF  205 (234)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~ll~~~~l~~~~  205 (234)
                         .++++||+..+++...                                    ++.+.+++..+.++++..+++  ++
T Consensus        77 ---riGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~L--LL  151 (352)
T COG4148          77 ---RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPEL--LL  151 (352)
T ss_pred             ---eeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCe--ee
Confidence               4556666655543311                                    123455667888999999999  89


Q ss_pred             EeCChhhhhhcchhh
Q 026725          206 MDVPLQVCEARDPKG  220 (234)
Q Consensus       206 ld~P~~~l~~R~~~~  220 (234)
                      +|||...|+.-...+
T Consensus       152 mDEPLaSLD~~RK~E  166 (352)
T COG4148         152 MDEPLASLDLPRKRE  166 (352)
T ss_pred             ecCchhhcccchhhH
Confidence            999999996544333

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.54  E-value=2e-14  Score=136.99  Aligned_cols=138  Identities=18%  Similarity=0.216  Sum_probs=95.9

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcccccc-ccccCCCChhh-------
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG-LNRDLSFKAED-------  155 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~-~~~~~~~~~~~-------  155 (234)
                      +++.+++|+|+++++||+++|+||||||||||+++|+|... ++   +|+|.++|.++... ....+++.+++       
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~-~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence            35779999999999999999999999999999999999876 54   79999999876411 00011111111       


Q ss_pred             -HHHHHH---------------HHHHHHHHHHhcCce-----EEE------ecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          156 -RVENIR---------------RIGEVAKLFADAGVI-----CIA------CLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       156 -~~~~~~---------------~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                       .++++.               ....+..++...++.     .+.      .++.+.+++...+++++..+.+  +++|+
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v--lllDE  192 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL--LFCDE  192 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE--EEeeC
Confidence             011110               011233344443331     111      2455667778899999999998  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..|+......+++.+++
T Consensus       193 PtsgLD~~~~~~l~~~L~~  211 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKG  211 (617)
T ss_pred             CCcchhHHHHHHHHHHHHH
Confidence            9999999998888877765

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.54  E-value=1.9e-14  Score=148.78  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=102.2

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc--ccccc---cc-
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN--CRHGL---NR-  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~--v~~~~---~~-  147 (234)
                      .++++|+++.|++  .++++|+||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|.-  +....   +. 
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~i~yv~Q~~~l~~~T  714 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKGSVAYVPQQAWIQNDS  714 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECCEEEEEcCCccccCCc
Confidence            5889999999974  579999999999999999999999999999999999998 899999998731  00000   00 


Q ss_pred             -----cCCCChhhHHHHHHHHHHHHHHHHhcCce------EE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          148 -----DLSFKAEDRVENIRRIGEVAKLFADAGVI------CI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       148 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                           .++.... . +.+..+........+....      .+    ..++.+.+++...+|+++...++  +++|+|++.
T Consensus       715 i~eNI~~g~~~~-~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i--llLDEp~sa  790 (1522)
T TIGR00957       715 LRENILFGKALN-E-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSA  790 (1522)
T ss_pred             HHHHhhcCCccC-H-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence                 0111000 0 1111111111111111111      11    23456677888999999999998  899999999


Q ss_pred             hhhcchhhHHHHHH
Q 026725          213 CEARDPKGLYKLAR  226 (234)
Q Consensus       213 l~~R~~~~l~~~~~  226 (234)
                      ++....+.+++.+.
T Consensus       791 LD~~~~~~i~~~l~  804 (1522)
T TIGR00957       791 VDAHVGKHIFEHVI  804 (1522)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99988888888775

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.53  E-value=2.1e-14  Score=141.59  Aligned_cols=150  Identities=12%  Similarity=0.182  Sum_probs=111.1

Q ss_pred             ccceeeceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----cc
Q 026725           75 TVAKSTNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~  148 (234)
                      ..+..+++++.|+... +++++|+.|++||+.++.|+|||||||++++|.|... |++|++++.|.++....+     ..
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-~t~G~a~i~g~~i~~~~~~~~~~~~  641 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-PTSGEALIKGHDITVSTDFQQVRKQ  641 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-CCcceEEEecCccccccchhhhhhh
Confidence            5677899999998877 9999999999999999999999999999999999988 999999999999875322     22


Q ss_pred             CCCChhhHH--------HHHHHHHH------------HHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          149 LSFKAEDRV--------ENIRRIGE------------VAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       149 ~~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +|+-|+.-.        +++...+.            +.......++     .....++.+.++....+.+++..+.+  
T Consensus       642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v--  719 (885)
T KOG0059|consen  642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV--  719 (885)
T ss_pred             cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE--
Confidence            566666421        22211111            1111222222     22233455566666778888888888  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++...+..+|..+.+
T Consensus       720 i~LDEPstGmDP~arr~lW~ii~~  743 (885)
T KOG0059|consen  720 ILLDEPSTGLDPKARRHLWDIIAR  743 (885)
T ss_pred             EEecCCCCCCCHHHHHHHHHHHHH
Confidence            899999999999888888887653

>PLN03130 ABC transporter C family member; Provisional

Probab=99.52  E-value=4.2e-14  Score=146.57  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=100.2

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc-cEEEEcCccc--cccc---c
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNC--RHGL---N  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~-G~i~~~g~~v--~~~~---~  146 (234)
                      .++++|+++.|+.   .++++|+||++++|+.++|+||||||||||+++|+|.++ |.+ |+|.+.+.--  .+..   +
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~GG~I~l~~~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRSDASVVIRGTVAYVPQVSWIFN  692 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCCCceEEEcCeEEEEcCccccCC
Confidence            5889999999964   568999999999999999999999999999999999998 888 8998765310  0000   0


Q ss_pred             c------cCCCChhhHHHHHHHHHHHHHHHHhcC------ceEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          147 R------DLSFKAEDRVENIRRIGEVAKLFADAG------VICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       147 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                      .      .++.. .+ .+.+..+.+...+..+..      ...+    ..++.+.+++...||+++...++  +++|+|+
T Consensus       693 gTIreNI~fg~~-~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I--lLLDEpt  768 (1622)
T PLN03130        693 ATVRDNILFGSP-FD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV--YIFDDPL  768 (1622)
T ss_pred             CCHHHHHhCCCc-cc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE--EEECCCc
Confidence            0      01111 11 111222222221111111      1112    23456778888999999999998  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      +.++....+.+++....
T Consensus       769 SALD~~~~~~I~~~~l~  785 (1622)
T PLN03130        769 SALDAHVGRQVFDKCIK  785 (1622)
T ss_pred             cccCHHHHHHHHHHHhh
Confidence            99988777777765443

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.52  E-value=3.1e-13  Score=108.95  Aligned_cols=131  Identities=50%  Similarity=0.857  Sum_probs=94.2

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      ++|++++|+|++||||||+++.|++.+. +..+ .++++++.++......+++..+++..+.+.+..+...+...+...+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi   80 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR-EAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVL   80 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence            6899999999999999999999999887 4444 4568887765433333456666676666666556655555555555


Q ss_pred             EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       179 ~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      .....+....++.++++..  .+..++++.|.+.+.+|+.+.+|+..+.+++..+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~  133 (175)
T PRK00889         81 VSAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHF  133 (175)
T ss_pred             EecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCC
Confidence            4444455666666766654  3456899999999999998889988877766654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.51  E-value=3.1e-14  Score=146.96  Aligned_cols=149  Identities=16%  Similarity=0.200  Sum_probs=98.4

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-EEcC------cccc--c
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDG------DNCR--H  143 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-~~~g------~~v~--~  143 (234)
                      .++++|+++.|+.   .++++|+||++++|+.++|+|+||||||||+++|+|+++ |.+|.+ .+.+      |+..  .
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i~~~~~~Iayv~Q~p~Lf~  692 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSSVVIRGSVAYVPQVSWIFN  692 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCEEEecCcEEEEcCcccccc
Confidence            5889999999964   578999999999999999999999999999999999998 777644 3322      1110  0


Q ss_pred             cc---cccCC--CChhhHHHHHHHHHHHHHHHHhc--C-ceEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          144 GL---NRDLS--FKAEDRVENIRRIGEVAKLFADA--G-VICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       144 ~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      .-   +..++  ++.++..+.+... .....+...  + ...+    ..++.+.+++...||+++...++  +++|+|++
T Consensus       693 gTIreNI~fg~~~~~e~~~~vl~~~-~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I--lLLDEptS  769 (1495)
T PLN03232        693 ATVRENILFGSDFESERYWRAIDVT-ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI--YIFDDPLS  769 (1495)
T ss_pred             ccHHHHhhcCCccCHHHHHHHHHHh-CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence            00   00011  1222221211111 011111111  1 1122    23456778888999999999998  89999999


Q ss_pred             hhhhcchhhHHHHHHcC
Q 026725          212 VCEARDPKGLYKLAREG  228 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~~~  228 (234)
                      .++....+.+++....+
T Consensus       770 aLD~~t~~~I~~~~l~~  786 (1495)
T PLN03232        770 ALDAHVAHQVFDSCMKD  786 (1495)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            99888888787765443

>PLN03140 ABC transporter G family member; Provisional

Probab=99.48  E-value=1.1e-13  Score=142.14  Aligned_cols=150  Identities=15%  Similarity=0.132  Sum_probs=100.3

Q ss_pred             cceeeceeeec-------------CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEEEEcCccc
Q 026725           76 VAKSTNILWHK-------------NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNC  141 (234)
Q Consensus        76 ~~~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i~~~g~~v  141 (234)
                      .+..+|+++..             +.+.+|+|+|+++++|++++|+||||||||||+++|+|.... +.+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            46778888765             234799999999999999999999999999999999998651 2579999999775


Q ss_pred             cccc-cccCCCChhh--------HHHHHHHH---------------HHHHHHHHhcCceE-----E-----EecCcccHH
Q 026725          142 RHGL-NRDLSFKAED--------RVENIRRI---------------GEVAKLFADAGVIC-----I-----ACLISPYRK  187 (234)
Q Consensus       142 ~~~~-~~~~~~~~~~--------~~~~~~~~---------------~~~~~~~~~~~~~~-----~-----~~~~~~~~~  187 (234)
                      .... ...+++.+++        ..+.+...               ..+..++...++..     +     ..++.+.++
T Consensus       947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140        947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred             ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence            3210 0111111111        11111110               01222333333211     1     124455677


Q ss_pred             HHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       188 ~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +..++++++..+.+  +++|||+..|+.+....+.+.+++
T Consensus      1027 RvsIa~aL~~~P~l--L~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140       1027 RLTIAVELVANPSI--IFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred             HHHHHHHHhhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            77899999999999  899999999998888777776654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.47  E-value=1.2e-13  Score=110.28  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHH
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE  165 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  165 (234)
                      -+-.+|.++..||++-++||||||||||+..++|++  |.+|+|.++|.++..       ++..+..+.+.++.+
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~~-------~~~~eLArhRAYLsQ   79 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLEA-------WSATELARHRAYLSQ   79 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchhH-------HhHhHHHHHHHHHhh
Confidence            366789999999999999999999999999999977  689999999999874       666667666665443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.46  E-value=2.6e-13  Score=139.26  Aligned_cols=138  Identities=16%  Similarity=0.108  Sum_probs=93.7

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc---cCCccEEEEcCcccccc---ccccCCCChhh------
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRHG---LNRDLSFKAED------  155 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~---~p~~G~i~~~g~~v~~~---~~~~~~~~~~~------  155 (234)
                      .+++|+|+|+.+++||+++|+||||||||||+|+|+|++.   .|.+|+|.++|+++...   ....+++..++      
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence            4679999999999999999999999999999999999862   26789999999876321   01111111111      


Q ss_pred             --HHHHHHH-------------------HHHH-HHHHHhcCceEE----------EecCcccHHHHHHHHHhCCCCCceE
Q 026725          156 --RVENIRR-------------------IGEV-AKLFADAGVICI----------ACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       156 --~~~~~~~-------------------~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                        ..+.+..                   ...+ ..++...++...          ..++.+.+++..++++++..+.+  
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v--  230 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI--  230 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE--
Confidence              0011100                   0011 122333333221          12456677888999999999988  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..|+......+.+.+++
T Consensus       231 lllDEPTsgLD~~~~~~i~~~L~~  254 (1394)
T TIGR00956       231 QCWDNATRGLDSATALEFIRALKT  254 (1394)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHH
Confidence            899999999988888777766654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.46  E-value=2.3e-13  Score=140.47  Aligned_cols=131  Identities=15%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccc---cc------cCCCChhhH
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGL---NR------DLSFKAEDR  156 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~---~~------~~~~~~~~~  156 (234)
                      .++++|+||++++|++++|+||||||||||+++|+|+++ |.+|+|.++|. +.   ...   +.      .++..... 
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g~-iayv~Q~~~l~~~Ti~eNI~~g~~~~~-  515 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSGR-ISFSPQTSWIMPGTIKDNIIFGLSYDE-  515 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCE-EEEEeCCCccCCccHHHHHHhccccch-
Confidence            568999999999999999999999999999999999998 89999999883 11   000   00      01110000 


Q ss_pred             HHHHHHHHHHHHHHHhcCce------EE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHH
Q 026725          157 VENIRRIGEVAKLFADAGVI------CI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                       ++...+.....+..+....      .+    ..++.+.+++...+++++....+  +++|+|+..++....+.+++..
T Consensus       516 -~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i--llLDep~saLD~~~~~~i~~~~  591 (1490)
T TIGR01271       516 -YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFTHLDVVTEKEIFESC  591 (1490)
T ss_pred             -HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence             0111111111111111111      11    23456677888999999999998  8999999999998888888753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.41  E-value=1.4e-12  Score=124.09  Aligned_cols=132  Identities=21%  Similarity=0.214  Sum_probs=88.0

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCccccccccc-cCCCChhhH--------
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNR-DLSFKAEDR--------  156 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~~~~-~~~~~~~~~--------  156 (234)
                      .+++|++||..+++||++||+||||||||||+++|+|....  ..+|+|.+||+........ ..++..|+-        
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            46899999999999999999999999999999999998862  3579999999543221100 001111100        


Q ss_pred             HHH---------------HHHHHHHHHHHHhcCceE-----EE-----ecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          157 VEN---------------IRRIGEVAKLFADAGVIC-----IA-----CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       157 ~~~---------------~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      ++.               ..+...+..+....++..     +.     ..+.+.+++...+.+++..+.+  +++|||+.
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i--LflDEPTS  199 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI--LFLDEPTS  199 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE--EEecCCCC
Confidence            000               001113444455544431     11     1234566777899999999999  89999999


Q ss_pred             hhhhcchhhH
Q 026725          212 VCEARDPKGL  221 (234)
Q Consensus       212 ~l~~R~~~~l  221 (234)
                      .|+......+
T Consensus       200 GLDS~sA~~v  209 (613)
T KOG0061|consen  200 GLDSFSALQV  209 (613)
T ss_pred             CcchhhHHHH
Confidence            9987776443

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.41  E-value=3.1e-13  Score=135.78  Aligned_cols=149  Identities=15%  Similarity=0.114  Sum_probs=105.4

Q ss_pred             cceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc-
Q 026725           76 VAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD-  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~-  148 (234)
                      .++++|++.+|...  .+|+++||+|++||.+||+|..|||||||+.+|-++.. |.+|+|.+||.|+.+..    ... 
T Consensus      1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE-PAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred             eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-ccCCeEEEcCeecccccHHHHHhcC
Confidence            68899999999644  79999999999999999999999999999999999998 89999999999986421    000 


Q ss_pred             ---------------------CCCChhhHHHHHHHHHHHHHHHHhcC-ce-EE----EecCcccHHHHHHHHHhCCCCCc
Q 026725          149 ---------------------LSFKAEDRVENIRRIGEVAKLFADAG-VI-CI----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       149 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                                           -.++.++.++.+....--..+-+.+. +- .+    ..++.+.++..-.+|++|.+..+
T Consensus      1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred             eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence                                 01222333333332211111112111 11 11    23456677777889999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +.+||.+...+.....-+-+-+|+
T Consensus      1297 --LvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1297 --LVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred             --EEEecccccCChHHHHHHHHHHHH
Confidence              899999999977666555555554

>PLN03140 ABC transporter G family member; Provisional

Probab=99.41  E-value=7.4e-13  Score=136.05  Aligned_cols=137  Identities=12%  Similarity=0.094  Sum_probs=92.2

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccccccc-cccCCCChhh--------
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL-NRDLSFKAED--------  155 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~~~~-~~~~~~~~~~--------  155 (234)
                      .+.+|+|+|+.+++|++++|+||||||||||+|+|+|++. |.   +|+|.++|+++.... ...+++..++        
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT  255 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT  255 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence            4679999999999999999999999999999999999987 77   899999998764211 1111111111        


Q ss_pred             HHHHHHHHH----------------------------------------------HHHHHHHhcCceE-----E-----E
Q 026725          156 RVENIRRIG----------------------------------------------EVAKLFADAGVIC-----I-----A  179 (234)
Q Consensus       156 ~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~-----~-----~  179 (234)
                      ..+.+....                                              .+..++...++..     +     .
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence            011111000                                              0112233333321     1     1


Q ss_pred             ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++.+.+++...++.++..+.+  +++|||+..|+......+.+.+++
T Consensus       336 glSGGerkRVsia~aL~~~p~v--lllDEPTsGLDs~t~~~i~~~Lr~  381 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKT--LFMDEISTGLDSSTTYQIVKCLQQ  381 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcE--EEEeCCCcCccHHHHHHHHHHHHH
Confidence            2345566677788888998888  899999999988887777766654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.37  E-value=8.6e-13  Score=120.43  Aligned_cols=150  Identities=14%  Similarity=0.121  Sum_probs=101.6

Q ss_pred             cccceeeceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----
Q 026725           74 STVAKSTNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----  148 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----  148 (234)
                      .|++.+.|+++.|.+. .+..+++|-+..++.++++||||+|||||+|++.|.+. |..|.+.-.-...-...+..    
T Consensus       387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~~~~~y~Qh~~e~  465 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHNKLPRYNQHLAEQ  465 (614)
T ss_pred             CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccccchhhhhhhHhh
Confidence            4688999999999755 68899999999999999999999999999999999999 89998866544432111100    


Q ss_pred             CCCChhhHH---H-H--HHHHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026725          149 LSFKAEDRV---E-N--IRRIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR  216 (234)
Q Consensus       149 ~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R  216 (234)
                      +.+......   + +  ......+..++..+++.      ++..++.+.+.+.-.++-+++.+.+  +++|+|++.++-.
T Consensus       466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l--LlLDEPtnhLDi~  543 (614)
T KOG0927|consen  466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL--LLLDEPTNHLDIE  543 (614)
T ss_pred             cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE--EEecCCCcCCCch
Confidence            111111000   0 0  01112333344444442      2333445556666677888999999  8999999999766


Q ss_pred             chhhHHHHHH
Q 026725          217 DPKGLYKLAR  226 (234)
Q Consensus       217 ~~~~l~~~~~  226 (234)
                      ....+.+.+-
T Consensus       544 tid~laeaiN  553 (614)
T KOG0927|consen  544 TIDALAEAIN  553 (614)
T ss_pred             hHHHHHHHHh
Confidence            6666666654

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.37  E-value=2.4e-13  Score=120.16  Aligned_cols=118  Identities=17%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             EEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh--------hHHHHHHHH------------H
Q 026725          107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE--------DRVENIRRI------------G  164 (234)
Q Consensus       107 liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~--------~~~~~~~~~------------~  164 (234)
                      |+||||||||||+|+|+|+++ |++|+|.++|+++....  ...+++..+        ...+++...            .
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            689999999999999999998 99999999998874311  011111111        111222110            0


Q ss_pred             HHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          165 EVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       165 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+...+...++..     ...++.+.++....+++++..+.+  +++|||+..++......+++.+++
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--llLDEP~s~LD~~~~~~l~~~l~~  145 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI--LLLDEPLSALDKKLRDQMQLELKT  145 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHHHH
Confidence            1222233333321     123455667778889999999998  899999999998888888877754

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PTZ00243 ABC transporter; Provisional

Probab=99.36  E-value=2.3e-12  Score=133.48  Aligned_cols=138  Identities=17%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             eeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccc---ccc----CCC-
Q 026725           83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGL---NRD----LSF-  151 (234)
Q Consensus        83 ~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~---~~~----~~~-  151 (234)
                      .+.+++..+++|+||++++|++++|+||||||||||+++|+|++. |.+|+|.+.+. +.   ...   +..    +.+ 
T Consensus       667 ~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~~~-i~yv~Q~~~l~~~Tv~enI~~~  744 (1560)
T PTZ00243        667 FFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERS-IAYVPQQAWIMNATVRGNILFF  744 (1560)
T ss_pred             ccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCe-EEEEeCCCccCCCcHHHHHHcC
Confidence            345566789999999999999999999999999999999999998 89999987532 11   000   000    000 


Q ss_pred             ChhhHHHHHHHHHH---HHHHHHhc--Cc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026725          152 KAEDRVENIRRIGE---VAKLFADA--GV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (234)
Q Consensus       152 ~~~~~~~~~~~~~~---~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l  221 (234)
                      .+.+. +.+.....   ....+...  +.     .....++.+.+++...+++++..+.+  +++|+|+..++....+.+
T Consensus       745 ~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i--llLDEP~saLD~~~~~~i  821 (1560)
T PTZ00243        745 DEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV--YLLDDPLSALDAHVGERV  821 (1560)
T ss_pred             ChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCccccCCHHHHHHH
Confidence            01000 01111101   11111111  11     01123456677788899999999998  899999999987766766


Q ss_pred             HHHH
Q 026725          222 YKLA  225 (234)
Q Consensus       222 ~~~~  225 (234)
                      ++..
T Consensus       822 ~~~~  825 (1560)
T PTZ00243        822 VEEC  825 (1560)
T ss_pred             HHHH
Confidence            6644

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.34  E-value=5.4e-12  Score=106.04  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=31.8

Q ss_pred             ecCCccccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026725           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus        85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLl  119 (234)
                      ...+..+++++||++++||+++|+|+||||||||+
T Consensus         4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            33467899999999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.31  E-value=1.9e-11  Score=116.94  Aligned_cols=138  Identities=58%  Similarity=0.989  Sum_probs=112.7

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (234)
                      +..-+++.++++.|.+||||||+++.|+..+.....+.+++++++++..+....+++.+++..+++.+..++..+...+.
T Consensus       454 ~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~  533 (632)
T PRK05506        454 ARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGL  533 (632)
T ss_pred             HHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            33445799999999999999999999998876334567899999988766555678888888888887777777777787


Q ss_pred             eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      ..+..+..+.+..|+.+++++....+..++++.|.+.|.+|+.++||++.+.+++.++
T Consensus       534 ~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l  591 (632)
T PRK05506        534 IVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNF  591 (632)
T ss_pred             EEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccc
Confidence            7777777777788889998887767777999999999999999999988877776654

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.31  E-value=5.4e-11  Score=95.92  Aligned_cols=132  Identities=36%  Similarity=0.581  Sum_probs=88.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      .++|.++++.|++||||||+++.|+..+..+..+.++++++.++.... ..++......+...+...+.......+..++
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI   82 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI   82 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            468999999999999999999999998865667889999988764221 1123333333322222233333444454555


Q ss_pred             EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       179 ~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      .......+..+...+.++..  ...++++.|.+.+.+|..+++|....++++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~  135 (176)
T PRK05541         83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNV  135 (176)
T ss_pred             EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCccccc
Confidence            55444444556666666553  245899999999999999888887766665543

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.29  E-value=2.5e-11  Score=114.46  Aligned_cols=137  Identities=47%  Similarity=0.684  Sum_probs=104.3

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADA  173 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (234)
                      .-..++|++++|+|++||||||+++.|+..+. ...|  .++++++.++..+..+.+++..++..+.+++...+......
T Consensus       386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~-~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~  464 (568)
T PRK05537        386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM-EMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKN  464 (568)
T ss_pred             ccccCCCeEEEEECCCCChHHHHHHHHHHHhh-hccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            34578899999999999999999999999887 4234  47889988876555566788888877777665555544455


Q ss_pred             CceEEEecCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          174 GVICIACLISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      +...+.....+.++.|+..++++...+ +..++++.|.+.|.+|+.+.||+..+.+.++.+
T Consensus       465 Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l  525 (568)
T PRK05537        465 GGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGF  525 (568)
T ss_pred             CCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhcc
Confidence            656666655677777788888887644 456899999999999999999977666666554

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.28  E-value=3.1e-12  Score=105.38  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC---------ccEEEEcCccccccc-cccCCCChhhHHHHHH-
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---------KLTYILDGDNCRHGL-NRDLSFKAEDRVENIR-  161 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---------~G~i~~~g~~v~~~~-~~~~~~~~~~~~~~~~-  161 (234)
                      +++++++.+| +++|+||||||||||+++|++++. +.         .|.+.+.|++..... ...+++..++....+. 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~   91 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG-EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI   91 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc-cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence            6789999999 999999999999999999999875 43         235666666542211 0111222211100000 


Q ss_pred             -HHHHHHHHHHhcC--ceEEEecCcccHHHHHHHHHhC----CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          162 -RIGEVAKLFADAG--VICIACLISPYRKDRDACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       162 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll----~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       ....+..++....  ......++.+.++....++.++    ....+  +++|||+..++......+++.+++
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~i--lllDEP~~~LD~~~~~~l~~~l~~  162 (197)
T cd03278          92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPF--CVLDEVDAALDDANVERFARLLKE  162 (197)
T ss_pred             EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence             0001111111111  1112233445555556666553    44466  899999999988888887777664

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.28  E-value=1.7e-11  Score=114.71  Aligned_cols=148  Identities=20%  Similarity=0.225  Sum_probs=100.0

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc-cccccccc----
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD----  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~-v~~~~~~~----  148 (234)
                      ..++++|++..-+ +...+++.+|++++|+.+-|.|+||||||||+|+|+|+.+ -.+|+|.+-.+. +-. .++.    
T Consensus       391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P~~~~~lf-lpQ~PY~p  468 (604)
T COG4178         391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMPADSALLF-LPQRPYLP  468 (604)
T ss_pred             ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecCCCCceEE-ecCCCCCC
Confidence            4788999998885 4678999999999999999999999999999999999987 567888765222 210 0000    


Q ss_pred             -------C-------CCChhhHHHHHHHHHHHHHHHHhcCc-eEE-EecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          149 -------L-------SFKAEDRVENIRRIGEVAKLFADAGV-ICI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       149 -------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                             +       .++.++..+.+..+ ....+...... ... ..++.+.+++...||-++.++++  +++||.++.
T Consensus       469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~v-gL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~--v~LDEATsA  545 (604)
T COG4178         469 QGTLREALCYPNAAPDFSDAELVAVLHKV-GLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW--VFLDEATSA  545 (604)
T ss_pred             CccHHHHHhCCCCCCCCChHHHHHHHHHc-CcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE--EEEecchhc
Confidence                   0       02222222221111 00111111000 001 11234556677889999999999  899999999


Q ss_pred             hhhcchhhHHHHHHc
Q 026725          213 CEARDPKGLYKLARE  227 (234)
Q Consensus       213 l~~R~~~~l~~~~~~  227 (234)
                      +++.....+|+.+++
T Consensus       546 LDe~~e~~l~q~l~~  560 (604)
T COG4178         546 LDEETEDRLYQLLKE  560 (604)
T ss_pred             cChHHHHHHHHHHHh
Confidence            999999999999887

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.27  E-value=5.2e-12  Score=93.72  Aligned_cols=48  Identities=29%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ..++++++|++++|++++|+||||||||||++++.       +|.+.++|+++..
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~   49 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVE   49 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHH
Confidence            46899999999999999999999999999999985       5889999998853

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.26  E-value=7.2e-12  Score=114.21  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCcccc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNCR  142 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~~v~  142 (234)
                      .+|+++|+++++||+++|+||||||||||++  +++.. |.+| +|.++|.++.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF   70 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence            5799999999999999999999999999999  67676 6666 8999999986

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.3e-11  Score=112.28  Aligned_cols=142  Identities=20%  Similarity=0.206  Sum_probs=89.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccccc---ccccC-
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHG---LNRDL-  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~~~---~~~~~-  149 (234)
                      =+...+++..||++.+|.+.++++..|..++|+|+||+|||||+|+|+.-.-.  |..-  .+-|.++...   +..+. 
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq--E~~g~~t~~~~~~l~~D~~  157 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ--EVRGDDTEALQSVLESDTE  157 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh--heeccchHHHhhhhhccHH
Confidence            35667899999999999999999999999999999999999999999871110  1111  1222222110   00000 


Q ss_pred             --CCChhhHHHHHH-HHHHHHH-HHHhcC------ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026725          150 --SFKAEDRVENIR-RIGEVAK-LFADAG------VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (234)
Q Consensus       150 --~~~~~~~~~~~~-~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~  219 (234)
                        .+-.++..-..+ ....+.. .+...+      ..+...++.+++-..+.+++++..++|  +++|||++.|+-+...
T Consensus       158 ~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl--LLLDEPTNhLDv~av~  235 (582)
T KOG0062|consen  158 RLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL--LLLDEPTNHLDVVAVA  235 (582)
T ss_pred             HHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE--EeecCCcccchhHHHH
Confidence              000000000000 0011111 222222      245567788888888999999999999  8999999999766544


Q ss_pred             hH
Q 026725          220 GL  221 (234)
Q Consensus       220 ~l  221 (234)
                      =|
T Consensus       236 WL  237 (582)
T KOG0062|consen  236 WL  237 (582)
T ss_pred             HH
Confidence            33

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.23  E-value=4.6e-12  Score=104.03  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             cceeeceeeec----CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC---CccEEEEcCcccccccccc
Q 026725           76 VAKSTNILWHK----NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNCRHGLNRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p---~~G~i~~~g~~v~~~~~~~  148 (234)
                      ++.++|++..+    |-+.+++++|+++.+||+-+++|.||||||-.+|+|+|..+..   +....+|++.++.      
T Consensus         3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL------   76 (330)
T COG4170           3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLL------   76 (330)
T ss_pred             cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhh------
Confidence            45666666655    4578999999999999999999999999999999999987621   2244566666655      


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHhcC
Q 026725          149 LSFKAEDRVENIRRIGEVAKLFADAG  174 (234)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (234)
                       .+++.++++.++.  .++++||++.
T Consensus        77 -~L~Pr~RRk~ig~--~isMIFQeP~   99 (330)
T COG4170          77 -RLSPRERRKLVGH--NVSMIFQEPQ   99 (330)
T ss_pred             -cCChHHhhhhhcc--chhhhhcCch
Confidence             3788888877776  7889998764

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.23  E-value=4.7e-11  Score=120.36  Aligned_cols=144  Identities=18%  Similarity=0.241  Sum_probs=106.0

Q ss_pred             ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026725           75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      +.++++|.++..+.   .+.|+|+||+|++|+.++|+|+-|||||+|+.+|.|.++ ..+|.+.++|. +.        |
T Consensus       517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs-ia--------Y  586 (1381)
T KOG0054|consen  517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS-VA--------Y  586 (1381)
T ss_pred             ceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCe-EE--------E
Confidence            35777777776643   348999999999999999999999999999999999998 88999999986 21        1


Q ss_pred             ChhhH------------------HHHHHHHHHHHHHHHhcCc------eEE----EecCcccHHHHHHHHHhCCCCCceE
Q 026725          152 KAEDR------------------VENIRRIGEVAKLFADAGV------ICI----ACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       152 ~~~~~------------------~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      .+|+.                  .+++..+.+...+-.|...      ..+    ..++.+.+++-..||+.-+..++  
T Consensus       587 v~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI--  664 (1381)
T KOG0054|consen  587 VPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI--  664 (1381)
T ss_pred             eccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE--
Confidence            11111                  1223333333333333322      222    23456778888999999999998  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHcCcC
Q 026725          204 VFMDVPLQVCEARDPKGLYKLAREGKV  230 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~~~~  230 (234)
                      .++|-|.+.++....+-+|+....|-.
T Consensus       665 YLLDDplSAVDahvg~~if~~ci~~~L  691 (1381)
T KOG0054|consen  665 YLLDDPLSAVDAHVGKHIFEECIRGLL  691 (1381)
T ss_pred             EEEcCcchhhhHhhhHHHHHHHHHhhh
Confidence            899999999999999999988776544

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.21  E-value=9.4e-11  Score=99.12  Aligned_cols=42  Identities=17%  Similarity=0.061  Sum_probs=33.4

Q ss_pred             eeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           78 KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        78 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +++|+ ++|++..++.+++     |++++|+||||||||||+++|+++
T Consensus         5 ~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~   46 (243)
T cd03272           5 IIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV   46 (243)
T ss_pred             EEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence            33443 3566777888876     789999999999999999999844

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.16  E-value=3e-10  Score=92.00  Aligned_cols=111  Identities=23%  Similarity=0.321  Sum_probs=68.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----ccCCCChhhHHHHHHHHHHHHHHHHh-cC
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKAEDRVENIRRIGEVAKLFAD-AG  174 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  174 (234)
                      +|++++|+|+|||||||++++|++++. +    +.++|+++.....     ..+++...++..+...+....+.... ..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE   76 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999886 4    5889988643211     11333333333344443343333311 11


Q ss_pred             ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026725          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (234)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~  219 (234)
                      ...++ .....+..++.+++...  .+..++++.|.+.+.+|..+
T Consensus        77 ~g~iv-~s~~~~~~R~~~r~~~~--~~~~v~l~a~~~~l~~Rl~~  118 (176)
T PRK09825         77 TGFIV-CSSLKKQYRDILRKSSP--NVHFLWLDGDYETILARMQR  118 (176)
T ss_pred             CEEEE-EEecCHHHHHHHHhhCC--CEEEEEEeCCHHHHHHHHhc
Confidence            11122 22234556666765543  45568999999999887644

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.12  E-value=1.8e-10  Score=105.43  Aligned_cols=55  Identities=22%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~  131 (234)
                      -+++.|+++.|.++..+.|+.|++.+|+.++|+|+|||||||++++|.|-.. |..
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-P~p  129 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-PIP  129 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-CCC
Confidence            4778999999999999999999999999999999999999999999999876 544

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=5.3e-10  Score=100.52  Aligned_cols=146  Identities=18%  Similarity=0.151  Sum_probs=97.8

Q ss_pred             cccceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc--------
Q 026725           74 STVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------  144 (234)
Q Consensus        74 ~~~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~--------  144 (234)
                      .|++-+.+++|.| +..+.+..++|-|.--..++|+||||.|||||+++|.|-+. |..|+.+-+- .++-.        
T Consensus       584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~RKnh-rL~iG~FdQh~~E  661 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELRKNH-RLRIGWFDQHANE  661 (807)
T ss_pred             CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhhccc-eeeeechhhhhHH
Confidence            4688899999999 56678899999999999999999999999999999999998 8888765331 11100        


Q ss_pred             -ccc----------cCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          145 -LNR----------DLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       145 -~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                       ++.          .+.+.-++.+..++.   .+ +......+.+..++.+.+.+...+.-++..+++  +++|+|++.|
T Consensus       662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~---fG-L~sHAHTikikdLSGGQKaRValaeLal~~PDv--lILDEPTNNL  735 (807)
T KOG0066|consen  662 ALNGEETPVEYLQRKFNLPYQEARKQLGT---FG-LASHAHTIKIKDLSGGQKARVALAELALGGPDV--LILDEPTNNL  735 (807)
T ss_pred             hhccccCHHHHHHHhcCCChHHHHHHhhh---hh-hhhccceEeeeecCCcchHHHHHHHHhcCCCCE--EEecCCCCCc
Confidence             000          001111111111110   00 011111233344556666666677777888887  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +......|...+.+
T Consensus       736 DIESIDALaEAIne  749 (807)
T KOG0066|consen  736 DIESIDALAEAINE  749 (807)
T ss_pred             chhhHHHHHHHHHh
Confidence            88888888888874

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.08  E-value=6.2e-10  Score=102.34  Aligned_cols=147  Identities=24%  Similarity=0.318  Sum_probs=99.9

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----c
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----D  148 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~  148 (234)
                      .+++++++++...    .++|+||++++||+++|.|.-|||+|-|+++|.|..+ +.+|+|.++|+.+....+.     .
T Consensus       261 ~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~G~~v~~~sp~~Ai~~G  335 (500)
T COG1129         261 EPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLDGKPVRIRSPRDAIKAG  335 (500)
T ss_pred             CcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEECCEEccCCCHHHHHHcC
Confidence            4467777776543    5789999999999999999999999999999999666 7899999999987543211     2


Q ss_pred             CCCChhhHH-----------HHH-----HHH------------HHHHHHHHhcCc------eEEEecCcccHHHHHHHHH
Q 026725          149 LSFKAEDRV-----------ENI-----RRI------------GEVAKLFADAGV------ICIACLISPYRKDRDACRS  194 (234)
Q Consensus       149 ~~~~~~~~~-----------~~~-----~~~------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  194 (234)
                      ++|.+++|.           +++     ...            ............      ..+..++.+.++..-.++.
T Consensus       336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw  415 (500)
T COG1129         336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW  415 (500)
T ss_pred             CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence            344444442           110     000            000011111111      1223345555666667788


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +...+.+  +++|+|+-.++--...++|+.+++
T Consensus       416 L~~~p~v--LilDEPTRGIDVGAK~eIy~li~~  446 (500)
T COG1129         416 LATDPKV--LILDEPTRGIDVGAKAEIYRLIRE  446 (500)
T ss_pred             HhcCCCE--EEECCCCcCcccchHHHHHHHHHH
Confidence            8888888  899999999977777888888764

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.06  E-value=1.8e-09  Score=99.69  Aligned_cols=152  Identities=16%  Similarity=0.155  Sum_probs=100.7

Q ss_pred             ccceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE--cC--cccccccc--
Q 026725           75 TVAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL--DG--DNCRHGLN--  146 (234)
Q Consensus        75 ~~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~--~g--~~v~~~~~--  146 (234)
                      ..+++++++..-.  +..+++++||+|++|+-+-|+||||||||+|+|.++|+.+ ..+|.+..  +|  +++--.+.  
T Consensus       432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~~~~lfflPQrP  510 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGGPKDLFFLPQRP  510 (659)
T ss_pred             ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCCCCceEEecCCC
Confidence            5789999998875  4567899999999999999999999999999999999886 57888754  33  22210000  


Q ss_pred             --------ccCCC------------ChhhHHHHHHHHHHHHHHHHhcCce------EEEe-cCcccHHHHHHHHHhCCCC
Q 026725          147 --------RDLSF------------KAEDRVENIRRIGEVAKLFADAGVI------CIAC-LISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       147 --------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~ll~~~  199 (234)
                              ..+-+            +.++..+.+..+ +...+....+-.      .+.. ++.+..++...||-...++
T Consensus       511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v-~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP  589 (659)
T KOG0060|consen  511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENV-QLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP  589 (659)
T ss_pred             CccccchhheeeccCccccccccCCCHHHHHHHHHHh-hhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence                    00001            111111111111 222222222211      1111 2344556667788888999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHHcCcC
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKV  230 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~  230 (234)
                      .+  .++||.++.+..-....+|++.++-.|
T Consensus       590 k~--AiLDE~TSAv~~dvE~~~Yr~~r~~gi  618 (659)
T KOG0060|consen  590 KF--AILDECTSAVTEDVEGALYRKCREMGI  618 (659)
T ss_pred             ce--EEeechhhhccHHHHHHHHHHHHHcCC
Confidence            88  799999999999889999999998654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.05  E-value=9.3e-11  Score=116.54  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=48.6

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCcccc
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR  142 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~~v~  142 (234)
                      +.+++|+||+=-+.+|.+++|+|+||||||||+++|+|... .+  +|.|+++|....
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~  858 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKD  858 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCc
Confidence            45689999999999999999999999999999999999754 22  599999998876

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.00  E-value=2.3e-09  Score=87.93  Aligned_cols=66  Identities=20%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ..++++++.|.|. .-+++-|+|++++.|..+.++|.||||||||+|+|+|-.- ...|.|.+.|.+-
T Consensus        12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-v~~~~v~Vlgrsa   78 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-VGGGVVQVLGRSA   78 (291)
T ss_pred             ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-ccCCeEEEcCcCc
Confidence            3688999999996 4589999999999999999999999999999999999765 4558888888764

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.99  E-value=1e-09  Score=91.31  Aligned_cols=47  Identities=23%  Similarity=0.211  Sum_probs=35.9

Q ss_pred             cceeeceeeecCCccccccceeeec-CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQ-KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~-~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|+. .|.+.   .+++|+.. +|++++|+||||||||||+++|++.+
T Consensus         5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l   52 (213)
T cd03279           5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence            46677777 44333   45667654 58999999999999999999999644

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.96  E-value=4.5e-10  Score=92.67  Aligned_cols=36  Identities=25%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ..+.+|++++.  |++++|+||||||||||+|+|++..
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            34677777665  6999999999999999999999865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=2.4e-09  Score=83.76  Aligned_cols=115  Identities=28%  Similarity=0.376  Sum_probs=85.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      ++.++|++||||||..++|.--+..+     +++|+|.....+.     .+.++.++|..|+..+......-...+-..+
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vV   88 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVV   88 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCCc-----ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEE
Confidence            78899999999999999999877633     7899998765443     3678888999998877655544434455667


Q ss_pred             EecCcccHHHHHHHHHhCC--------CCCceEEEEeCChhhhhhcc--hhhHHH
Q 026725          179 ACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARD--PKGLYK  223 (234)
Q Consensus       179 ~~~~~~~~~~~~~~~~ll~--------~~~l~~~~ld~P~~~l~~R~--~~~l~~  223 (234)
                      .+++..+++.|++++..+.        ...+..+++....+++..|-  +++.|+
T Consensus        89 lACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM  143 (191)
T KOG3354|consen   89 LACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM  143 (191)
T ss_pred             EEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC
Confidence            7777778888999998665        23455678888888888876  444443

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.93  E-value=1e-08  Score=88.02  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHH
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL  122 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l  122 (234)
                      .-|+|+|++|+.|.+++|+|+||||||||++.+
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            458999999999999999999999999999866

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.92  E-value=1.3e-09  Score=92.82  Aligned_cols=37  Identities=32%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGD  139 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~  139 (234)
                      +.+++|+||||||||||+++|++++. +. .|++++.+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~   62 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNL   62 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCH
Confidence            55899999999999999999999987 44 456666554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.91  E-value=2.4e-09  Score=96.59  Aligned_cols=119  Identities=18%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE-----EEEcCccccccccccCCCChhhHHHHHHHHHHH---H--
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-----YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV---A--  167 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~-----i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~--  167 (234)
                      ++..||+++++||||-||||++++|+|.++ |++|.     |.+.-|-+..    +...+.++.   ++.....   .  
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~~~~~~vSyKPQyI~~----~~~gtV~~~---l~~~~~~~~~~s~  434 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGSEEDLKVSYKPQYISP----DYDGTVEDL---LRSAIRSAFGSSY  434 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhcccc-CCCCCCccceEeecceeecC----CCCCcHHHH---HHHhhhhhcccch
Confidence            467889999999999999999999999999 89885     1111111111    001111111   1110000   0  


Q ss_pred             ---HHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          168 ---KLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       168 ---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                         .++..+.+     ..+..++.+.-++..++..+....++  .++|+|...|+-.-+-..-+++|
T Consensus       435 ~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl--YllDEPSA~LDvEqR~~vakvIR  499 (591)
T COG1245         435 FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL--YLLDEPSAYLDVEQRIIVAKVIR  499 (591)
T ss_pred             hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE--EEecCchhhccHHHHHHHHHHHH
Confidence               01111111     11223345555667788888888888  78999999995444433444443

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=5.4e-09  Score=81.22  Aligned_cols=109  Identities=28%  Similarity=0.364  Sum_probs=84.6

Q ss_pred             EcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecC
Q 026725          108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI  182 (234)
Q Consensus       108 iG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (234)
                      +|.+||||||...+|+-.+.     --+++|+++....+.     .+.++.++|..|+..+..........+...++.++
T Consensus         1 MGVsG~GKStvg~~lA~~lg-----~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG-----AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC-----CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence            69999999999999998765     348999998754332     36788899999999887777665555555677777


Q ss_pred             cccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc--hhhHHH
Q 026725          183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD--PKGLYK  223 (234)
Q Consensus       183 ~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~--~~~l~~  223 (234)
                      ..++..|++++.....+  ..++++.+.+++.+|-  +++.|+
T Consensus        76 ALKr~YRD~LR~~~~~~--~Fv~L~g~~~~i~~Rm~~R~gHFM  116 (161)
T COG3265          76 ALKRSYRDLLREANPGL--RFVYLDGDFDLILERMKARKGHFM  116 (161)
T ss_pred             HHHHHHHHHHhccCCCe--EEEEecCCHHHHHHHHHhcccCCC
Confidence            78888999999877654  4489999999998875  444443

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.88  E-value=4.3e-09  Score=86.71  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=29.8

Q ss_pred             ccccceeeecCCE-EEEEEcCCCCcHHHHHHHHH
Q 026725           91 KRDRQQLLQQKGC-VIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        91 ~l~~vs~~i~~Ge-~~~liG~nGsGKSTLlr~l~  123 (234)
                      .+.++||++.+|+ +++|+||||||||||+|+|+
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            3557899999994 89999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.88  E-value=5e-09  Score=93.74  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=74.9

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-------cCCccEEEEcCcccccccccc--CCCChhhHHH
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCRHGLNRD--LSFKAEDRVE  158 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-------~p~~G~i~~~g~~v~~~~~~~--~~~~~~~~~~  158 (234)
                      ...+++|+||++++|++++|+|+|||||||++++|+|...       .|++|.+.+--..+....+..  ..+......+
T Consensus       395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile  474 (593)
T COG2401         395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE  474 (593)
T ss_pred             eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence            4568999999999999999999999999999999999753       277888876543333222111  1122111222


Q ss_pred             HHHH-HHH---HHHHHHhcCceEEE-------ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhh
Q 026725          159 NIRR-IGE---VAKLFADAGVICIA-------CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA  215 (234)
Q Consensus       159 ~~~~-~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~  215 (234)
                      +++. ..+   .-.++...++..-.       .++.+++++-.+|..+.+.+++  ++.|+=.+.|+.
T Consensus       475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~--~~iDEF~AhLD~  540 (593)
T COG2401         475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV--LLIDEFAAHLDE  540 (593)
T ss_pred             HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc--EEhhhhhhhcCH
Confidence            2211 111   11223333332221       1234455556666777777788  566766666643

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.85  E-value=1.3e-09  Score=90.15  Aligned_cols=125  Identities=17%  Similarity=0.136  Sum_probs=66.8

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHH----hhcccCCccEEEEcCccccccccc-cCC----------CChh---hH
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALS----QALHWRGKLTYILDGDNCRHGLNR-DLS----------FKAE---DR  156 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~----gll~~p~~G~i~~~g~~v~~~~~~-~~~----------~~~~---~~  156 (234)
                      .++++.+| +++|+||||||||||+++|.    |... +++|.+..+.+.+...... .+.          +...   ..
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~   93 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI   93 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence            34566677 99999999999999999995    6655 6566444222212111000 000          0000   00


Q ss_pred             HHHHHHH--HHHHHHHHhcCceEEEecCcccHHH------HHHHHHhCCCCCceEEEEeCChhhhhhcchh-hHHHHHHc
Q 026725          157 VENIRRI--GEVAKLFADAGVICIACLISPYRKD------RDACRSMLPEGDFIEVFMDVPLQVCEARDPK-GLYKLARE  227 (234)
Q Consensus       157 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~-~l~~~~~~  227 (234)
                      .+.+...  ..+...+    ......++.+.++.      ...++.++..+.+  +++|+|+..++.+... .+++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~----~~~~~~LS~G~~~~~~la~rlala~al~~~p~i--lllDEP~~~LD~~~~~~~l~~~l~~  167 (204)
T cd03240          94 LENVIFCHQGESNWPL----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLDEENIEESLAEIIEE  167 (204)
T ss_pred             hhceeeechHHHHHHH----hcCccccCccHHHHHHHHHHHHHHHHhccCCCE--EEEcCCccccCHHHHHHHHHHHHHH
Confidence            0000000  0000000    01112233333332      3466777788888  8999999999888888 77776653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.85  E-value=3.2e-08  Score=79.06  Aligned_cols=103  Identities=23%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             EcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHH-hcCceEEEec
Q 026725          108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFA-DAGVICIACL  181 (234)
Q Consensus       108 iG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  181 (234)
                      +|+|||||||++++|++.+     |.++++|+.+....     ...+.+....+..+...+....+... ..+...++ .
T Consensus         1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~   74 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C   74 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence            6999999999999999976     45788886642110     01122233334444444444443322 22222223 2


Q ss_pred             CcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          182 ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       182 ~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ....+..++.+++  ....+..++++.|.+.|.+|-.
T Consensus        75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~  109 (163)
T PRK11545         75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLK  109 (163)
T ss_pred             ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHH
Confidence            3334556666666  3345677999999999988853

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.80  E-value=4.1e-08  Score=89.39  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=101.4

Q ss_pred             cccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc-cccc-----c
Q 026725           74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGL-----N  146 (234)
Q Consensus        74 ~~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v-~~~~-----~  146 (234)
                      .+++++++++..-. +.+.+.++||+++.||+++|.|-.|-|-+.|+.+|+|+.+ +.+|+|.++|+++ ....     .
T Consensus       255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v~~~~~~~~~r~  333 (501)
T COG3845         255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKDVLGRLSPRERRR  333 (501)
T ss_pred             CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-cCCceEEECCEeccccCCHHHHHh
Confidence            56999999998875 4688999999999999999999999999999999999887 7779999999997 2111     1


Q ss_pred             ccCCCChhhHH-----------HHH--H-----------------HHHHHHHHHHhcCce------EEEecCcccHHHHH
Q 026725          147 RDLSFKAEDRV-----------ENI--R-----------------RIGEVAKLFADAGVI------CIACLISPYRKDRD  190 (234)
Q Consensus       147 ~~~~~~~~~~~-----------~~~--~-----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  190 (234)
                      ..+++.|++|.           ++.  +                 .-.....+...+.+.      +...++.+..+..=
T Consensus       334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I  413 (501)
T COG3845         334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI  413 (501)
T ss_pred             cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence            12445555542           000  0                 000111122222221      11222334444445


Q ss_pred             HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       191 ~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++++...+.+  ++...|+..++-=...-+++.+.+
T Consensus       414 laREl~~~p~l--LI~~qPTrGLDvgA~~~I~~~l~e  448 (501)
T COG3845         414 LARELARRPDL--LIAAQPTRGLDVGAIEFIHERLLE  448 (501)
T ss_pred             hhhhhccCCCE--EEEcCCCccccHHHHHHHHHHHHH
Confidence            67888888888  788999999966555556665554

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.78  E-value=6.3e-08  Score=76.85  Aligned_cols=107  Identities=22%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHHhcCceEEE
Q 026725          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (234)
                      ++|+||+||||||+++.|++.+     |.++++++++....     ....++..++...++..+......+...+...+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi   75 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII   75 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            4689999999999999999865     35678888764210     0012233344444444433333322222222233


Q ss_pred             ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ......+..++.++..  ...+..++++.|.+.+.+|..
T Consensus        76 ~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~  112 (163)
T TIGR01313        76 TCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMK  112 (163)
T ss_pred             EecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHH
Confidence            2223334455555532  234555889999999988764

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.75  E-value=1.6e-08  Score=83.47  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ..++++.+|++++|+||||||||||+|+|++..
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence            346667789999999999999999999999543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.74  E-value=4.8e-08  Score=84.24  Aligned_cols=39  Identities=26%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ..++|+||||||||||+++|+|++. +++|++.++|+++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECCEEee
Confidence            6789999999999999999999998 89999999999985

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.72  E-value=9.7e-09  Score=85.55  Aligned_cols=44  Identities=18%  Similarity=0.053  Sum_probs=37.3

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -++++|+. .|++..+++++++     ++++|+|||||||||++++|...
T Consensus         5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~   48 (212)
T cd03274           5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV   48 (212)
T ss_pred             EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence            35566665 7888889999987     79999999999999999999843

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.72  E-value=1.4e-07  Score=86.77  Aligned_cols=148  Identities=13%  Similarity=0.095  Sum_probs=89.0

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc---------cccc
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC---------RHGL  145 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v---------~~~~  145 (234)
                      -+..+|+-.--. +..++..++|+|++|-.+-|+||||||||+|.|.|.|+.+ ...|...+-..+.         ....
T Consensus       481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-vy~g~L~~P~~~~mFYIPQRPYms~g  559 (728)
T KOG0064|consen  481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-VYNGLLSIPRPNNIFYIPQRPYMSGG  559 (728)
T ss_pred             ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-ccCCeeecCCCcceEeccCCCccCcC
Confidence            455666655443 4557899999999999999999999999999999999876 3444433221110         0000


Q ss_pred             ---c-----------ccCCCChhhHHHHHHHHHHHHHHHHhcCceE-EEec----CcccHHHHHHHHHhCCCCCceEEEE
Q 026725          146 ---N-----------RDLSFKAEDRVENIRRIGEVAKLFADAGVIC-IACL----ISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       146 ---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                         +           .+-++..++....+..+ ..-.+.|..+-+. +..|    ..+.+++...++-...++..  .++
T Consensus       560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky--alL  636 (728)
T KOG0064|consen  560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY--ALL  636 (728)
T ss_pred             cccceeecCCcHHHHHhcCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch--hhh
Confidence               0           01234444443333222 3334455433222 2222    34455566677777777776  567


Q ss_pred             eCChhhhhhcchhhHHHHHHc
Q 026725          207 DVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ||-++.....-...+|+.++.
T Consensus       637 DEcTsAvsidvE~~i~~~ak~  657 (728)
T KOG0064|consen  637 DECTSAVSIDVEGKIFQAAKD  657 (728)
T ss_pred             hhhhcccccchHHHHHHHHHh
Confidence            887777766666777877664

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.71  E-value=1.1e-07  Score=94.43  Aligned_cols=43  Identities=28%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      .+++++++.     ..++++||+|++|++++|+|+||||||||++.+.
T Consensus       614 ~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        614 FLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             eEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            566777652     3599999999999999999999999999998763

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.71  E-value=1.1e-08  Score=83.41  Aligned_cols=48  Identities=25%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .+=+.+.+++|+.++|+||||||||||+++|+++++ +..|.+.+.+..
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~   62 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTA   62 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCcc
Confidence            344567799999999999999999999999999998 888999887643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.65  E-value=2.3e-07  Score=76.51  Aligned_cols=129  Identities=19%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc---cc-cccccc--------cCCCChhhHHHH
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NC-RHGLNR--------DLSFKAEDRVEN  159 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~---~v-~~~~~~--------~~~~~~~~~~~~  159 (234)
                      ++++++++.+| +.+|+||||||||||+.+|...+. .... ....|.   ++ ......        .-+........ 
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~-   87 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-GKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV-   87 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-CCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH-
Confidence            45677888887 779999999999999999986443 1110 000011   00 000000        00000000000 


Q ss_pred             HHHHHHHHHHHHh--cCceEEEecCcccHHHHHHHHHh----CCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          160 IRRIGEVAKLFAD--AGVICIACLISPYRKDRDACRSM----LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l----l~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .. ..++..++..  ........++.+.++....++.+    +..+.+  +++|||+..++......+++.+++
T Consensus        88 ~~-~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~i--lllDEP~~glD~~~~~~~~~~l~~  158 (198)
T cd03276          88 LS-QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPF--RCLDEFDVFMDMVNRKISTDLLVK  158 (198)
T ss_pred             HH-HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCE--EEecCcccccCHHHHHHHHHHHHH
Confidence            00 0011122221  11112233444555555666665    467777  899999999988887777776654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK06762 hypothetical protein; Provisional

Probab=98.64  E-value=2.1e-07  Score=74.06  Aligned_cols=112  Identities=20%  Similarity=0.178  Sum_probs=62.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEec
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL  181 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (234)
                      +.+++|.|++||||||+++.|+..+. +  +.+.++++.++...............+.+.   .........+...+...
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~-~--~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~---~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG-R--GTLLVSQDVVRRDMLRVKDGPGNLSIDLIE---QLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC-C--CeEEecHHHHHHHhccccCCCCCcCHHHHH---HHHHHHHhCCCEEEEch
Confidence            46899999999999999999998763 2  677788777654221110000000111111   11111122343444333


Q ss_pred             CcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcchh
Q 026725          182 ISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPK  219 (234)
Q Consensus       182 ~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~~  219 (234)
                      .......++.++.+.+..  .+..++++.|.+.|.+|..+
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~  115 (166)
T PRK06762         76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHST  115 (166)
T ss_pred             hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhc
Confidence            222233344455554443  34568999999999988753

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.63  E-value=4.5e-08  Score=89.47  Aligned_cols=67  Identities=25%  Similarity=0.132  Sum_probs=56.4

Q ss_pred             cccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc---Ccccc
Q 026725           74 STVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD---GDNCR  142 (234)
Q Consensus        74 ~~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~---g~~v~  142 (234)
                      .+.++.++++..|. +..+++.++ .+.+|++++|+|+||||||||+++|+++.. |+.|.|.+.   |+++.
T Consensus       137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~  207 (450)
T PRK06002        137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVR  207 (450)
T ss_pred             CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHH
Confidence            34677788888884 678888885 999999999999999999999999999887 888988875   45543

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.62  E-value=5.2e-07  Score=70.54  Aligned_cols=112  Identities=27%  Similarity=0.283  Sum_probs=64.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----ccCCCChhhHHHHHHHHHHHHHHHH-hcCceE
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKAEDRVENIRRIGEVAKLFA-DAGVIC  177 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  177 (234)
                      ++.|.|++||||||+++.|...+     |...++++++.....     ....+...+...+...+........ ..+...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v   75 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV   75 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            47899999999999999998854     345778777664210     1112222223333333322222111 123333


Q ss_pred             EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhh
Q 026725          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       178 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~  220 (234)
                      +.......+..++.+.+++....+..++++.|.+.+.+|....
T Consensus        76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (150)
T cd02021          76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR  118 (150)
T ss_pred             EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence            3333334455666677665444566789999999998887443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.56  E-value=3.6e-07  Score=74.37  Aligned_cols=37  Identities=35%  Similarity=0.566  Sum_probs=30.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      |++++|+||||||||||+++|++.+. +   .+.+.+..+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~   38 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ-T---QLLVAHRYIT   38 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC-C---eEEEcCEECC
Confidence            78999999999999999999999765 3   4666665554

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.51  E-value=1.7e-06  Score=69.62  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=26.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~  136 (234)
                      |++++|+||||||||||++.|++.+. .. |.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~-~~-~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA-GD-PRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-cC-CcEEE
Confidence            67899999999999999999999875 33 44444

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.51  E-value=1.1e-07  Score=88.59  Aligned_cols=62  Identities=15%  Similarity=0.157  Sum_probs=56.0

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ..|+++.+|...+++++++.+..|+.+.|+|+||||||||++.|.|+++ |.+|.+.++...+
T Consensus       187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-p~~g~e~le~~~i  248 (506)
T PRK09862        187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-DLSNEEALESAAI  248 (506)
T ss_pred             ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-CCCCcEEEecchh
Confidence            3588899998899999999999999999999999999999999999998 8889888776554

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=4.1e-07  Score=83.35  Aligned_cols=146  Identities=14%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             cccceeeceeeecCCc--cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-cc---
Q 026725           74 STVAKSTNILWHKNSV--DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NR---  147 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-~~---  147 (234)
                      .|.+++.++++.|...  +++.+++++++--..++++|+||+||||++|++.+-+. |.+|.+.+.+.---... ..   
T Consensus       360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~r~ri~~f~Qhhvd  438 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRHPRLRIKYFAQHHVD  438 (582)
T ss_pred             CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-cccceeeecccceecchhHhhhh
Confidence            5688999999999644  58999999999999999999999999999999999887 88888877654211000 00   


Q ss_pred             ---------------cCCCChhhHHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          148 ---------------DLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       148 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                                     .-|..+++.+++.+.++-    -.+.....+..++.+.+.....|.-.+..+.+  +.+|||++.
T Consensus       439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl----~g~la~~si~~LSGGQKsrvafA~~~~~~Phl--LVLDEPTNh  512 (582)
T KOG0062|consen  439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL----SGELALQSIASLSGGQKSRVAFAACTWNNPHL--LVLDEPTNH  512 (582)
T ss_pred             HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC----CchhhhccccccCCcchhHHHHHHHhcCCCcE--EEecCCCcc
Confidence                           011222222222111100    00111112334555666666777777888888  899999999


Q ss_pred             hhhcchhhHHHHHH
Q 026725          213 CEARDPKGLYKLAR  226 (234)
Q Consensus       213 l~~R~~~~l~~~~~  226 (234)
                      |+......|-+.++
T Consensus       513 LD~dsl~AL~~Al~  526 (582)
T KOG0062|consen  513 LDRDSLGALAKALK  526 (582)
T ss_pred             ccHHHHHHHHHHHH
Confidence            96555555655554

>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length

Probab=98.50  E-value=1.6e-08  Score=70.27  Aligned_cols=68  Identities=12%  Similarity=0.135  Sum_probs=49.7

Q ss_pred             cCCCCcccccccceeec----Cccccccccccccccccccccccceeeccccccc--cccccCcccceeeceee
Q 026725           17 CSPSLAEVDFRTSVKMS----GFFNVSRLRSLQPIKALEESATASVVQESAAISG--NNLCQNSTVAKSTNILW   84 (234)
Q Consensus        17 ~~~~l~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~   84 (234)
                      +++.|.++|||||||++    +++++.+..++.+++.+...........|.....  .......++++++|++|
T Consensus         1 ks~lL~~~GIREPLYitALk~ag~~l~~~~~l~~l~~l~~~~~~~~l~~w~~~~~~~~~~~~~~~LL~l~nlsf   74 (74)
T PF12558_consen    1 KSDLLEQNGIREPLYITALKYAGVDLTKEDHLSDLDNLDLSDVKEKLQQWQDKQPPPKEKQEKEPLLELENLSF   74 (74)
T ss_pred             CcchHhhcCCCccHHHHHHHHcCCCcccCCCccCHHHCCcHHHHHHHHHHHhccCCcccCCCCCceeeecCCcC
Confidence            46889999999999999    8999999999999988877764445555543211  11224456888888764

The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.49  E-value=1.6e-07  Score=74.89  Aligned_cols=108  Identities=19%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC-ChhhHHHHHHHHHHHHHHHHhc
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF-KAEDRVENIRRIGEVAKLFADA  173 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (234)
                      .++.+.++.+++|+|||||||||+++++...+- ...+.+.. +.++..      +. .+.....           +   
T Consensus        14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~-~~~~~~~~-~~~~~~------g~~~~~~~~~-----------~---   71 (162)
T cd03227          14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG-GAQSATRR-RSGVKA------GCIVAAVSAE-----------L---   71 (162)
T ss_pred             cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH-hcchhhhc-cCcccC------CCcceeeEEE-----------E---
Confidence            345555667999999999999999999877665 34333332 111111      11 0000000           0   


Q ss_pred             CceEEEecCcccHHHHHHHHHhCC----CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          174 GVICIACLISPYRKDRDACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~ll~----~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       ++....++.+.++....++.+..    ...+  +++|||...++..+...+.+.+.+
T Consensus        72 -i~~~~~lS~G~~~~~~la~~L~~~~~~~~~l--lllDEp~~gld~~~~~~l~~~l~~  126 (162)
T cd03227          72 -IFTRLQLSGGEKELSALALILALASLKPRPL--YILDEIDRGLDPRDGQALAEAILE  126 (162)
T ss_pred             -ehheeeccccHHHHHHHHHHHHhcCCCCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence             11111233444455555555543    4455  899999999988887777766654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.49  E-value=1.8e-07  Score=76.94  Aligned_cols=28  Identities=43%  Similarity=0.561  Sum_probs=26.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|++++|+||||||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999863

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.49  E-value=1.3e-07  Score=86.62  Aligned_cols=51  Identities=29%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|.|.+.|+.
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Ger  195 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGER  195 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecC
Confidence            46789999 9999999999999999999999999999887 889999885443

>TIGR00235 udk uridine kinase

Probab=98.48  E-value=1.5e-07  Score=77.97  Aligned_cols=29  Identities=45%  Similarity=0.571  Sum_probs=27.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -++|++++|+|+||||||||++.|++++.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36899999999999999999999999886

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.47  E-value=1.5e-07  Score=77.95  Aligned_cols=39  Identities=23%  Similarity=0.061  Sum_probs=35.6

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ...+.+|++|++..|++++|+|||||||||++|+++++.
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.45  E-value=3.1e-07  Score=61.35  Aligned_cols=35  Identities=43%  Similarity=0.470  Sum_probs=29.4

Q ss_pred             ccceeeecC-CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           93 DRQQLLQQK-GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        93 ~~vs~~i~~-Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++..+++.+ |.++.|.|+|||||||++.+|.-++.
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            445677764 56999999999999999999988776

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.45  E-value=2.9e-06  Score=68.28  Aligned_cols=115  Identities=25%  Similarity=0.199  Sum_probs=62.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-------cCCCC------hhhHH-HHHHHHHHH
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLSFK------AEDRV-ENIRRIGEV  166 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-------~~~~~------~~~~~-~~~~~~~~~  166 (234)
                      +|.++.|.|++||||||+++.|...+..+   .+.++.+++......       .+.+.      ++... ..++.....
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence            47899999999999999999998865411   233343333221110       00011      11111 111111122


Q ss_pred             HHHHHhcCceEEEecCcc-cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026725          167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (234)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~  219 (234)
                      ...+...+..+++..... ....++.++.+. ...+..++++.|.+.|.+|..+
T Consensus        78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~-~~~~~~v~l~~~~~~l~~R~~~  130 (175)
T cd00227          78 VAAMARAGANVIADDVFLGRAALQDCWRSFV-GLDVLWVGVRCPGEVAEGRETA  130 (175)
T ss_pred             HHHHHhCCCcEEEeeeccCCHHHHHHHHHhc-CCCEEEEEEECCHHHHHHHHHh
Confidence            222334455555443222 344455555543 3556778899999999988864

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.44  E-value=1.9e-07  Score=85.14  Aligned_cols=54  Identities=20%  Similarity=0.097  Sum_probs=47.8

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCcccc
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCR  142 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~  142 (234)
                      .+..+++++ +++.+||+++|+|+||+|||||+++|++... ++.   |.|...|+++.
T Consensus       137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-~dv~v~g~Ig~rg~ev~  193 (428)
T PRK08149        137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-ADVFVIGLIGERGREVT  193 (428)
T ss_pred             CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-CCeEEEEEEeeCCccHH
Confidence            356889999 9999999999999999999999999999776 665   78888888775

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.43  E-value=2.2e-07  Score=84.88  Aligned_cols=52  Identities=21%  Similarity=0.129  Sum_probs=43.0

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCccc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNC  141 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v  141 (234)
                      +..+++++ |++.+|++++|+|+||+|||||+++|+|+.. ++.   |.|-.+++++
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev  196 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREV  196 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHH
Confidence            56799999 9999999999999999999999999999876 654   3344444444

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.43  E-value=1.9e-07  Score=85.22  Aligned_cols=62  Identities=23%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             cceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           76 VAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        76 ~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      .++..+++..+ .+..+++++ |++.+|+.++|+|+||+|||||+++|++... ++.|.+.+.|+
T Consensus       129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-~d~~vi~~iGe  191 (433)
T PRK07594        129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-ADSNVLVLIGE  191 (433)
T ss_pred             ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-CCEEEEEEECC
Confidence            34445555555 468899999 9999999999999999999999999999887 78888877665

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.42  E-value=2.7e-07  Score=81.44  Aligned_cols=49  Identities=31%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      +..+++.+ +.+.+|++++|+|+||+|||||+++|++... ++.|.+.+-|
T Consensus        56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~~vi~~iG  104 (326)
T cd01136          56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-ADVNVIALIG  104 (326)
T ss_pred             CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEe
Confidence            56789999 9999999999999999999999999999887 7777776655

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.38  E-value=4.3e-06  Score=70.54  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=32.8

Q ss_pred             ecCCEEEEEEcCCCCcHHHH-HHHHHhhcccCCccEEEEcC
Q 026725           99 QQKGCVIWITGLSGSGKSTL-ACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTL-lr~l~gll~~p~~G~i~~~g  138 (234)
                      +++|+++.|.|+|||||||| ++.+++++. ++...+++..
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~   60 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVST   60 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeC
Confidence            89999999999999999999 588888776 5666667654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.38  E-value=2.1e-06  Score=89.46  Aligned_cols=40  Identities=25%  Similarity=0.273  Sum_probs=34.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHH
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC  120 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr  120 (234)
                      .+++++++     ...++++||+|++||+++|+|+||||||||++
T Consensus       600 ~L~l~~~~-----~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        600 TLTLSKAT-----KHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             eEEEeccc-----cCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            45666664     23699999999999999999999999999999

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.37  E-value=3.7e-07  Score=76.76  Aligned_cols=35  Identities=34%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT  133 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~  133 (234)
                      +-.+..+++|.|+||||||||+++|+++++ +.+|.
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~   63 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGEL   63 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCC
Confidence            345688999999999999999999999998 77787

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.35  E-value=5.7e-07  Score=76.51  Aligned_cols=37  Identities=30%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI  135 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~  135 (234)
                      +...++ +++|+||||||||||+.+|++++. +..|.++
T Consensus        18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r   54 (247)
T cd03275          18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-EKSSHLR   54 (247)
T ss_pred             ecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-CCccccc
Confidence            333444 999999999999999999999886 5445443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.34  E-value=5.9e-07  Score=82.28  Aligned_cols=50  Identities=24%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-~d~~vi~~iGe  199 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-CDVNVIALIGE  199 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCeEEEEEEcc
Confidence            56789999 9999999999999999999999999999887 78888888774

>PLN02796 D-glycerate 3-kinase

Probab=98.34  E-value=2.6e-07  Score=81.81  Aligned_cols=52  Identities=23%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             cccccceeee---cCCEE-----EEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcccc
Q 026725           90 DKRDRQQLLQ---QKGCV-----IWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCR  142 (234)
Q Consensus        90 ~~l~~vs~~i---~~Ge~-----~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~  142 (234)
                      .+++++++.+   ++|+.     ++|.|+||||||||++.|.+++. +.   .|.|.+|+..+.
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~-~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN-ATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc-ccCCceeEEEECCcccc
Confidence            4677888876   45554     99999999999999999999987 43   588889887654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.33  E-value=2.8e-06  Score=65.46  Aligned_cols=109  Identities=23%  Similarity=0.283  Sum_probs=59.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc----CCCChhhHHHHHHHHHHHHHHHHhcCceEEE
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----LSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (234)
                      ++.++|++||||||+++.+...+.     ...++.+++.......    .....+........+..........+...++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv   75 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV   75 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence            578999999999999999987542     4567666654322110    0011111111122221222222233444444


Q ss_pred             ecCcccHHHHHHHHHhCCCCCc--eEEEEeCChhhhhhcc
Q 026725          180 CLISPYRKDRDACRSMLPEGDF--IEVFMDVPLQVCEARD  217 (234)
Q Consensus       180 ~~~~~~~~~~~~~~~ll~~~~l--~~~~ld~P~~~l~~R~  217 (234)
                      .........++...+++...+.  .-++++.|.+.+.+|.
T Consensus        76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~  115 (143)
T PF13671_consen   76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERL  115 (143)
T ss_dssp             ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHH
T ss_pred             ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHH
Confidence            4334444566677777765553  3467788888887774

...

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=1.1e-06  Score=79.43  Aligned_cols=66  Identities=17%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNC  141 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v  141 (234)
                      -++++|++.+-.+...+.+.|+.|-.|..++++||||-|||||++.|+..-- -|..-.+++..+.+
T Consensus       264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv  330 (807)
T KOG0066|consen  264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV  330 (807)
T ss_pred             cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence            3678889888888899999999999999999999999999999999976421 13333455555544

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.30  E-value=7.5e-07  Score=74.74  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=39.0

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI  135 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~  135 (234)
                      ..+.+|+++++.+|++++|+||||+||||+++++++..--+..|.+.
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v   64 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV   64 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            45789999999999999999999999999999999933225556544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00767 rho transcription termination factor Rho

Probab=98.29  E-value=9.1e-07  Score=79.79  Aligned_cols=52  Identities=17%  Similarity=0.011  Sum_probs=46.8

Q ss_pred             cceeeceeeecCC-ccccc-----------cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           76 VAKSTNILWHKNS-VDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~-----------~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.++|+++.|.+ ..+|+           |+++.+.+|+.++|+||+|||||||++.|+..+.
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            5789999999964 45786           9999999999999999999999999999999765

Members of this family differ in the specificity of RNA binding.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.29  E-value=3.5e-06  Score=70.26  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +-.|+++.-..+.+++|+||||+|||||+|.++.
T Consensus        18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             EcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence            4455555433348999999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.28  E-value=7.5e-07  Score=81.47  Aligned_cols=49  Identities=29%  Similarity=0.201  Sum_probs=44.4

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG  180 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-ADVNVIALIG  180 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEc
Confidence            56789999 9999999999999999999999999999887 8888887743

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.25  E-value=8.8e-07  Score=81.31  Aligned_cols=50  Identities=32%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +..+++.+ |.+.+|+.++|+|+||+|||||+++|++... ++.+.+...|.
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG~  199 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-ADVNVIALIGE  199 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEEee
Confidence            46788999 9999999999999999999999999999887 77777665443

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.25  E-value=1.1e-06  Score=79.97  Aligned_cols=52  Identities=27%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+.-
T Consensus       124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-~~~gvi~~~Ger~  175 (413)
T TIGR03497       124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-ADINVIALIGERG  175 (413)
T ss_pred             cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCeEEEEEEccch
Confidence            56789999 9999999999999999999999999999887 7888888777543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.25  E-value=1.1e-06  Score=76.45  Aligned_cols=40  Identities=30%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcC
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDG  138 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g  138 (234)
                      .+...+++|.|+||||||||+++|.+++. .+.+|.+.+-+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~   99 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELIT   99 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEe
Confidence            35568999999999999999999999885 24567765533

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.22  E-value=1.4e-06  Score=81.30  Aligned_cols=44  Identities=32%  Similarity=0.375  Sum_probs=39.3

Q ss_pred             eeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        82 l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +...+|++..++|+.+.+ +|.+++|.|||||||||+++.|+..+
T Consensus       265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l  308 (512)
T PRK13477        265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL  308 (512)
T ss_pred             EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            455778999999999988 88999999999999999999999654

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.21  E-value=1e-06  Score=77.53  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=37.5

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      +++.+..|+.++|+|++|||||||+++|+++++ +..+.+.++
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ie  178 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIE  178 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEc
Confidence            457788999999999999999999999999987 777877775

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.20  E-value=1.2e-06  Score=80.27  Aligned_cols=54  Identities=19%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCccccc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCRH  143 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~~  143 (234)
                      +..+++.+ |++.+|++++|+|+||+|||||+++|+++.. ++.   |.|.+.|+++..
T Consensus       162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-~d~iv~g~Igerg~ev~e  218 (455)
T PRK07960        162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-ADVIVVGLIGERGREVKD  218 (455)
T ss_pred             cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-CCEEEEEEEEECCeEHHH
Confidence            34555555 9999999999999999999999999999887 664   888888888753

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.20  E-value=1.9e-06  Score=78.77  Aligned_cols=62  Identities=24%  Similarity=0.139  Sum_probs=50.4

Q ss_pred             ceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           77 AKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        77 ~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .+...++..+. +..+++.+ |.+.+|+.++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus       131 ~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGer  193 (432)
T PRK06793        131 FEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGER  193 (432)
T ss_pred             hheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCC
Confidence            34445555554 45677774 9999999999999999999999999999887 888988877655

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.20  E-value=1.5e-06  Score=79.20  Aligned_cols=51  Identities=29%  Similarity=0.260  Sum_probs=44.4

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      +..+++ .+|++.+|+.++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus       127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-~~~gvi~~iGer  177 (418)
T TIGR03498       127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-ADVVVIALVGER  177 (418)
T ss_pred             ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEeee
Confidence            455665 699999999999999999999999999999887 888988877653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.20  E-value=2e-06  Score=78.63  Aligned_cols=50  Identities=26%  Similarity=0.261  Sum_probs=42.6

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +..+++.+ +.+.+|+.++|+|+||+|||||+++|++... +..|.+..-|.
T Consensus       144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-~d~gvi~liGe  193 (434)
T PRK05922        144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-STINVIALIGE  193 (434)
T ss_pred             Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-CCceEEEEeCC
Confidence            45667775 9999999999999999999999999999877 78888765544

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.20  E-value=1.4e-06  Score=72.71  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ..+.+|++++..+ ++++|+|||||||||++|++++..
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            3478899999887 999999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.18  E-value=1.8e-06  Score=90.02  Aligned_cols=54  Identities=17%  Similarity=0.162  Sum_probs=43.4

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      ..++++.+.....++++||++++|++++|+|+||||||||+..+  ++  + .|++.+.
T Consensus       938 ~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~--~-~G~~~~~  991 (1809)
T PRK00635        938 PADITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LY--A-AGNIAYA  991 (1809)
T ss_pred             cceEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HH--h-hccEeee
Confidence            45667776656679999999999999999999999999988877  33  2 5777643

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.18  E-value=1.9e-06  Score=78.43  Aligned_cols=57  Identities=25%  Similarity=0.141  Sum_probs=46.9

Q ss_pred             ceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           81 NILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        81 ~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      .++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.+.+...|+
T Consensus       116 ~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-~~~~vi~~iGe  173 (411)
T TIGR03496       116 PIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-ADVVVVGLIGE  173 (411)
T ss_pred             CcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEEec
Confidence            3444453 57788888 9999999999999999999999999999887 77777665554

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.18  E-value=1.4e-06  Score=79.92  Aligned_cols=53  Identities=15%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc---cEEEEcCcccc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCR  142 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~---G~i~~~g~~v~  142 (234)
                      +..+++++ |.+.+|+.++|+|+||+|||||+++|+++.. ++.   |.|-..+.+++
T Consensus       155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~-~dv~V~g~Ig~rg~ev~  210 (451)
T PRK05688        155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE-ADIIVVGLIGERGREVK  210 (451)
T ss_pred             ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEeCcCcHhHH
Confidence            56889999 9999999999999999999999999999776 542   44445554443

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.18  E-value=1.4e-06  Score=79.71  Aligned_cols=50  Identities=26%  Similarity=0.170  Sum_probs=42.1

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      +..+++++ |++.+|+.++|+|+||+|||||+++|+++.+..+.+.|.+.|
T Consensus       151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            46788887 999999999999999999999999999987424557777744

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.17  E-value=1.9e-06  Score=72.27  Aligned_cols=37  Identities=24%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ...+.+|+++++.++++++|.|||||||||++++++-
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   52 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV   52 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence            3467899999999999999999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.17  E-value=1.5e-06  Score=72.82  Aligned_cols=24  Identities=42%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|+||||||||++.|.+++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999999986

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.16  E-value=2.2e-06  Score=75.66  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=36.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      -.+|++++++|||||||||++..|++.+. +..+.|.+.+.|.
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~  152 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDT  152 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCc
Confidence            36799999999999999999999999987 7778888776665

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.16  E-value=2.1e-06  Score=78.54  Aligned_cols=52  Identities=29%  Similarity=0.185  Sum_probs=45.3

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +..+++++ +++.+|++++|+|+||+|||||+++|++... +..+.|...|+.-
T Consensus       144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-~~v~vi~~iGerg  195 (434)
T PRK08472        144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-APIKVVALIGERG  195 (434)
T ss_pred             hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-CCEEEEEeeCccc
Confidence            46789999 9999999999999999999999999999776 6778887766553

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.14  E-value=2.2e-06  Score=85.04  Aligned_cols=42  Identities=29%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHH
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL  122 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l  122 (234)
                      .+++++++.     ..|+++||+|++|++++|+|+||||||||++-.
T Consensus       612 ~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~  653 (924)
T TIGR00630       612 FLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLINDT  653 (924)
T ss_pred             eEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence            567777752     359999999999999999999999999999843

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.12  E-value=2.5e-05  Score=67.98  Aligned_cols=114  Identities=23%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-----CCCChhhHHHHHHHHHHHHHHHHhcCceE
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (234)
                      .++.++|++||||||+++.|+..+.    +.+.++.++++......     ..+......................+...
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   78 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSV   78 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeE
Confidence            5788999999999999999988652    45677776665322110     11111111000111111111111223333


Q ss_pred             EEecCcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcchhh
Q 026725          178 IACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       178 ~~~~~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~~~  220 (234)
                      +..........++...+++...  .+..++++.|.+.+.+|..+.
T Consensus        79 Iid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R  123 (300)
T PHA02530         79 IISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR  123 (300)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence            4433333344444455444333  334477889999998887543

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.11  E-value=2.1e-05  Score=65.52  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=27.6

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++.+++.+| +.+|+|+||||||||+.+|.-.+.
T Consensus        15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~   48 (213)
T cd03277          15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLG   48 (213)
T ss_pred             ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            4556666665 678999999999999999987663

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.11  E-value=1.9e-06  Score=79.80  Aligned_cols=42  Identities=24%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G  132 (234)
                      .++++.++.+.+|.+++++||||+||||++..|++.+. ...|
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G  285 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-MRHG  285 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-HhcC
Confidence            34566777788999999999999999999999999875 4433

>TIGR01069 mutS2 MutS2 family protein

Probab=98.11  E-value=2.7e-06  Score=83.27  Aligned_cols=31  Identities=26%  Similarity=0.150  Sum_probs=28.9

Q ss_pred             ceeeecCC-EEEEEEcCCCCcHHHHHHHHHhh
Q 026725           95 QQLLQQKG-CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        95 vs~~i~~G-e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +|+++..+ ++++|+||||+|||||+|+|++.
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence            68888877 89999999999999999999998

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.10  E-value=2.2e-06  Score=68.93  Aligned_cols=26  Identities=50%  Similarity=0.547  Sum_probs=23.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      |++++|+||||||||||++.|++.+.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999654

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.10  E-value=5.2e-06  Score=85.81  Aligned_cols=48  Identities=21%  Similarity=0.101  Sum_probs=41.3

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +.+..|++..| +++|+|+|||||||++++|++++. +..|.+.+++.+.
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-~~~~~~~f~~~~~   65 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTE   65 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-CCCCeEEECCccc
Confidence            45567888876 999999999999999999999998 7888899887653

>COG0645 Predicted kinase [General function prediction only]

Probab=98.09  E-value=4.8e-05  Score=60.67  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=73.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc--------cCCCChhhHHHHHHHHHHHHHHHHhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR--------DLSFKAEDRVENIRRIGEVAKLFADA  173 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (234)
                      ++.+.+.|.+|+||||+++.|..++     |.+.+..+.+++.++.        .--|++..-...+..+...+......
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            3567889999999999999999865     3455555555543332        01134433333344444556666666


Q ss_pred             CceEEEecCcccHHHHHHHHHhCCCCCce--EEEEeCChhhhhhcc
Q 026725          174 GVICIACLISPYRKDRDACRSMLPEGDFI--EVFMDVPLQVCEARD  217 (234)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~ld~P~~~l~~R~  217 (234)
                      +..++.......+..|+.++.+....++.  .+.++.|.+.+..|.
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl  121 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRL  121 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHH
Confidence            77677666666677888888888887664  456788888886654

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.09  E-value=4.6e-06  Score=68.94  Aligned_cols=28  Identities=43%  Similarity=0.558  Sum_probs=25.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++.+++|.|+||||||||++.|++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999999999874

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.08  E-value=2.7e-06  Score=69.70  Aligned_cols=24  Identities=46%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|+||||||||+++|.+++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00368 Mg chelatase-related protein

Probab=98.08  E-value=2.6e-06  Score=79.50  Aligned_cols=58  Identities=19%  Similarity=0.160  Sum_probs=49.8

Q ss_pred             eeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        83 ~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +--+|...+.+.+++.+..|+.+.|+||||||||||++.|.++++ |.+|.+.+++..+
T Consensus       192 ~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp-~~~~~~~le~~~i  249 (499)
T TIGR00368       192 KDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP-PLTNEEAIETARI  249 (499)
T ss_pred             HHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC-CCCCcEEEecccc
Confidence            334567788999999999999999999999999999999999998 7888877765554

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>cd00879 Sar1 Sar1 subfamily

Probab=98.06  E-value=3.9e-06  Score=67.84  Aligned_cols=49  Identities=20%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh--------cccCCccEEEEcCccc
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--------LHWRGKLTYILDGDNC  141 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl--------l~~p~~G~i~~~g~~v  141 (234)
                      +++++++..+++++ +|+|++|||||||++.+.+-        .. +..+.+.+++..+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~-~~~~~i~~~~~~~   65 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLH-PTSEELTIGNIKF   65 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccC-cceEEEEECCEEE
Confidence            47788988888876 99999999999999999872        22 4556777776543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.06  E-value=4.4e-06  Score=72.27  Aligned_cols=36  Identities=33%  Similarity=0.384  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +++|+|+||||||||+++|++++. +..+.+.. .+++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~-~~~~~vi~-~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG-SDLVTVIC-LDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC-CCceEEEE-Cccc
Confidence            579999999999999999999987 55554433 3344

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.05  E-value=9e-06  Score=65.90  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+....+.+.+|+||||||||+++.+|+-.+.
T Consensus        16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~   47 (178)
T cd03239          16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLG   47 (178)
T ss_pred             EEecCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            33333333899999999999999999976553

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.03  E-value=4e-06  Score=67.86  Aligned_cols=35  Identities=34%  Similarity=0.320  Sum_probs=28.4

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++++.+++.+| +++|+|+||+||||++.+|.-.+.
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            46677788776 999999999999999999987774

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.03  E-value=1.1e-05  Score=73.39  Aligned_cols=51  Identities=25%  Similarity=0.156  Sum_probs=37.3

Q ss_pred             ceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE
Q 026725           81 NILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT  133 (234)
Q Consensus        81 ~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~  133 (234)
                      ++..+||.. -.|.++ -...+|++++|+|+||-||||.+|+|+|.+. |.-|.
T Consensus        79 e~vHRYg~NgFkL~~L-P~pr~G~V~GilG~NGiGKsTalkILaGel~-PNLG~  130 (591)
T COG1245          79 EVVHRYGVNGFKLYRL-PTPRPGKVVGILGPNGIGKSTALKILAGELK-PNLGR  130 (591)
T ss_pred             cceeeccCCceEEecC-CCCCCCcEEEEEcCCCccHHHHHHHHhCccc-cCCCC
Confidence            345666522 122222 1367999999999999999999999999998 76553

>PRK01889 GTPase RsgA; Reviewed

Probab=98.02  E-value=3.5e-06  Score=75.56  Aligned_cols=47  Identities=28%  Similarity=0.161  Sum_probs=41.0

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      ++.+...+.+|++++|+|+||+|||||+++|+|... +..|.|.+++.
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~  231 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDS  231 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCC
Confidence            455555688999999999999999999999999888 88999998764

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.02  E-value=5.9e-06  Score=75.51  Aligned_cols=39  Identities=26%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..+++.+ +.+.+|++++|+|+||+|||||+++|++...
T Consensus       149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~  187 (444)
T PRK08972        149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT  187 (444)
T ss_pred             cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence            45677777 9999999999999999999999999999765

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.02  E-value=8.7e-06  Score=66.25  Aligned_cols=20  Identities=40%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026725          104 VIWITGLSGSGKSTLACALS  123 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~  123 (234)
                      ++.|+||||+||||++|.++
T Consensus         1 ~~~ltG~N~~GKst~l~~i~   20 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVG   20 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHH
Confidence            36899999999999999998

>PRK07261 topology modulation protein; Provisional

Probab=98.01  E-value=3e-05  Score=62.37  Aligned_cols=24  Identities=63%  Similarity=0.657  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+|+||||||||++.|+..+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~   25 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYN   25 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998654

>PRK06820 type III secretion system ATPase; Validated

Probab=98.00  E-value=7.6e-06  Score=75.00  Aligned_cols=45  Identities=27%  Similarity=0.208  Sum_probs=39.9

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i  134 (234)
                      +..+++.+ +++.+||.++|+|+||+|||||+++|++... ++.+.+
T Consensus       150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~-~dv~V~  194 (440)
T PRK06820        150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA-ADVMVL  194 (440)
T ss_pred             CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC-CCEEEE
Confidence            57889999 9999999999999999999999999999776 666444

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=6.6e-06  Score=79.72  Aligned_cols=46  Identities=22%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEc
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILD  137 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~  137 (234)
                      ++++.++.+.+|++++++||||+||||++..|++.+. ...|  .|.+-
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~li  221 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALL  221 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEe
Confidence            5677888888999999999999999999999999875 3334  45443

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.96  E-value=9.7e-06  Score=74.18  Aligned_cols=42  Identities=29%  Similarity=0.249  Sum_probs=37.8

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~  131 (234)
                      +..+++++ +++.+|++++|+|+||+|||||+++|++... ++-
T Consensus       149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~-~dv  190 (439)
T PRK06936        149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE-VDV  190 (439)
T ss_pred             Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC-CCE
Confidence            46789999 9999999999999999999999999999776 543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.95  E-value=1.4e-05  Score=59.85  Aligned_cols=41  Identities=44%  Similarity=0.558  Sum_probs=31.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      .+..+.|+||+||||||+++.|+..+.....+.++++....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            36789999999999999999999988732225677766544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.94  E-value=5.8e-05  Score=64.16  Aligned_cols=110  Identities=25%  Similarity=0.280  Sum_probs=56.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHH-H-HHHHHHHhcCceEEEec
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI-G-EVAKLFADAGVICIACL  181 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  181 (234)
                      ++.++|++||||||+++.|+..+.......+.++++.++....   .+.. ......+.. . .+...+ ..+...+...
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~---~~~~-~~e~~~~~~~~~~i~~~l-~~~~~VI~D~   75 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP---VWKE-KYEEFIRDSTLYLIKTAL-KNKYSVIVDD   75 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH---HhhH-HhHHHHHHHHHHHHHHHH-hCCCeEEEec
Confidence            3789999999999999999987752233456666655542110   0110 111111110 0 111111 1223333333


Q ss_pred             CcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcch
Q 026725          182 ISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       182 ~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~  218 (234)
                      .......+.....++...  ....++++.|.+.|.+|..
T Consensus        76 ~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~  114 (249)
T TIGR03574        76 TNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI  114 (249)
T ss_pred             cchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence            332333333333333322  3344788999999988863

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.94  E-value=1.3e-05  Score=64.69  Aligned_cols=39  Identities=26%  Similarity=0.137  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDN  140 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~  140 (234)
                      ...+++|+|+||||||||++.|.+.+. +.   -|.|...++.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~-~~g~~vg~Ik~~~~~   46 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHHD   46 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh-hcCCeEEEEEEcCCC
Confidence            344899999999999999999999887 43   3888886653

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.94  E-value=4e-05  Score=59.56  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      ++.|.|+||+||||+++.+++... +..+.+.+-+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~   34 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVD   34 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEE
Confidence            478999999999999999999876 5556665543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.92  E-value=1.3e-05  Score=65.93  Aligned_cols=38  Identities=26%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ++.|.||+||||||+++.|.+.+..+..|.|....+++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~   40 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI   40 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence            68999999999999999999887634456665554443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06761 hypothetical protein; Provisional

Probab=97.92  E-value=0.00015  Score=62.92  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=63.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccE--EEEcCcccc-ccccccCCCChhhHHHHHHHHHHHHHHHHh----cC
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCR-HGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AG  174 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~--i~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  174 (234)
                      +.+++|.|++||||||+++.|+..+. ...-.  +..++.... ........++..++.++++....+...+..    .+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~-~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g   81 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILS-QNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKG   81 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC-cCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence            45899999999999999999998775 22111  233343211 111122346777777777666555443332    22


Q ss_pred             ceEEEecCcccHHHHHHHHH-hCCCCCceEEEEeCChhhhhhcc
Q 026725          175 VICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~-ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      ...++.+.......++...+ .+....+.+++ +-|.+.+.+|-
T Consensus        82 ~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~  124 (282)
T PRK06761         82 DYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELI  124 (282)
T ss_pred             CeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHH
Confidence            23344444444444444443 33333344344 78888777665

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.91  E-value=1.5e-05  Score=72.42  Aligned_cols=40  Identities=28%  Similarity=0.232  Sum_probs=34.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNC  141 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v  141 (234)
                      +.-+++|.|++|||||||++.|.+++. +.   .|.|.+|+..+
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~-~~g~~vgvISiDDfYL  253 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFR-VTGRKSATLSIDDFYL  253 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc-ccCCceEEEEECCccC
Confidence            458999999999999999999999886 44   68888888665

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.91  E-value=4.8e-05  Score=59.40  Aligned_cols=38  Identities=32%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g~~v  141 (234)
                      .+.|+|++|||||||+++|.|..... ..-.+.+.+.-+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~I   41 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTI   41 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEE
Confidence            57899999999999999999965312 123455554434

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.90  E-value=1.4e-05  Score=69.34  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      -|.-+.+.+++|+|++|||||||++.+.+.+. ...+.+.+.|+.
T Consensus        98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~-~~~~~~VI~gD~  141 (290)
T PRK10463         98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLK-DSVPCAVIEGDQ  141 (290)
T ss_pred             HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc-cCCCEEEECCCc
Confidence            35567899999999999999999999999876 556777777653

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.88  E-value=1.4e-05  Score=75.41  Aligned_cols=38  Identities=18%  Similarity=0.231  Sum_probs=33.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .--+++|.||||||||||++.|++++  +..|.|.+||..
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglL--p~vgvIsmDdy~  101 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYN  101 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhC--CCcEEEEEccee
Confidence            34689999999999999999999986  567899998864

>cd04155 Arl3 Arl3 subfamily

Probab=97.88  E-value=1.7e-05  Score=62.91  Aligned_cols=39  Identities=28%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh----cccCCcc----EEEEcCccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA----LHWRGKL----TYILDGDNC  141 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl----l~~p~~G----~i~~~g~~v  141 (234)
                      .-.++|+|++|||||||++.|.+.    .. |+.|    .+.++|..+
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~-~t~g~~~~~i~~~~~~~   60 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHIT-PTQGFNIKTVQSDGFKL   60 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcccC-CCCCcceEEEEECCEEE
Confidence            345899999999999999999996    33 5667    677766554

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.87  E-value=1.4e-05  Score=70.08  Aligned_cols=39  Identities=36%  Similarity=0.342  Sum_probs=35.9

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++++++++..++++++|+|++|||||||+..+.+.+.
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999775

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
3uie_A	200	Crystal Structure Of Adenosine 5'-Phosphosulfate Ki		1e-74
1d6j_A	211	Crystal Structure Of Adenosine 5'-Phosphosulfate (A		4e-44
1x6v_B	630	The Crystal Structure Of Human 3'-Phosphoadenosine-		2e-43
2ofw_A	208	Crystal Structure Of The Apsk Domain Of Human Papss		1e-42
2ofx_A	207	Crystal Structure Of The Apsk Domain Of Human Papss		3e-42
2pey_A	179	Crystal Strucutre Of Deletion Mutant Of Aps-Kinase		3e-40
2ax4_A	198	Crystal Structure Of The Kinase Domain Of Human 3'-		4e-40
3cr7_A	197	Crystal Structure Of N-Terminal Truncation Of Aps K		3e-39
2gks_A	546	Crystal Structure Of The Bi-Functional Atp Sulfuryl		7e-32
2yvu_A	186	Crystal Structure Of Ape1195 Length = 186		1e-23
3cr8_A	552	Hexameric Aps Kinase From Thiobacillus Denitrifican		5e-21
1m8p_A	573	Crystal Structure Of P. Chrysogenum Atp Sulfurylase		5e-15
1i2d_A	573	Crystal Structure Of Atp Sulfurylase From Penicilli		5e-15
4eun_A	200	Crystal Structure Of A Sugar Kinase (Target Efi-502		8e-04

>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase From Arabidopsis Thaliana In Complex With Amppnp And Aps Length = 200

Iteration: 1
 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2   STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61
Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62  DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121
Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KG
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 155

>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps) Kinase From Penicillium Chrysogenum Length = 211

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 108/165 (65%), Gaps = 15/165 (9%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L  Q +  R    Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-- 195
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121
Query: 196 ---------LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
                    LP   F+EV++DVP++V E RDPKGLYK AREG +K
Sbjct: 122 VATPGEETGLP---FVEVYVDVPVEVAEQRDPKGLYKKAREGVIK 163

>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'- Phosphosulfate Synthetase 1 Length = 630

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 115/172 (66%), Gaps = 8/172 (4%)
Query: 68  NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALS 123
           +N  QN  + ++TN+ +  + V +  R Q++  +G    C +W+TGLSG+GK+T++ AL 
Sbjct: 14  SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73
Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + L   G   Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   IS
Sbjct: 74  EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133
Query: 184 PYRKDRDACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           PY +DR+  R  + EG    F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 134 PYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 184

>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 Complexed With 2 Aps Molecules Length = 208

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 110/164 (67%), Gaps = 12/164 (7%)
Query: 78  KSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           ++TN+ +  + V +  R Q++  +G    C IW+TGLSG+GK+T++ AL + L   G   
Sbjct: 5   RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPC 64
Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R
Sbjct: 65  YTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNAR 124
Query: 194 SM-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
            +     LP   F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 125 QIHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 165

>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In Complex With Adpmg And Paps Length = 207

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 109/163 (66%), Gaps = 12/163 (7%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLTY 134
           +TN+ +  + V +  R Q++  +G    C +W+TGLSG+GK+T++ AL + L   G   Y
Sbjct: 5   ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 135 ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
            LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R 
Sbjct: 65  TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 124
Query: 195 M-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           +     LP   F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 125 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 164

>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain Of Human Paps-Synthetase 1 Length = 179

Iteration: 1
 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 97/139 (69%), Gaps = 8/139 (5%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
             +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R GLN++L F  EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVC 213
           N+RRI EVAKLFADAG++CI   ISPY +DR+  R +     LP   F EVF+D PL VC
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLP---FFEVFVDAPLHVC 118
Query: 214 EARDPKGLYKLAREGKVKG 232
           E RD KGLYK AR G++KG
Sbjct: 119 EQRDVKGLYKKARAGEIKG 137

>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'- Phosphoadenosine 5'-Phosphosulphate Synthetase 2 Length = 198

Iteration: 1
 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 97/137 (70%), Gaps = 8/137 (5%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
           +GC +W+TGLSG+GK+T++ AL + L       Y LDGDN RHGLNR+L F   DR ENI
Sbjct: 21  RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVCEA 215
           RRI EVAKLFADAG++CI   ISP+ KDR+  R +     LP   F E+F+D PL +CE+
Sbjct: 81  RRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLP---FFEIFVDAPLNICES 137
Query: 216 RDPKGLYKLAREGKVKG 232
           RD KGLYK AR G++KG
Sbjct: 138 RDVKGLYKRARAGEIKG 154

>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase From Penicillium Chrysogenum: Ternary Structure With Adp And Paps Length = 197

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 94/144 (65%), Gaps = 15/144 (10%)
Query: 100 QKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           Q+G  IW+TGLS SGKSTLA  L  Q +  R    Y LDGDN R GLN+DL F   DR E
Sbjct: 1   QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----------LPEGDFIEVFMD 207
           NIRRI EVAKLFAD+  I I   ISPYRKDRD  R +           LP   F+EV++D
Sbjct: 61  NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLP---FVEVYVD 117
Query: 208 VPLQVCEARDPKGLYKLAREGKVK 231
           VP++V E RDPKGLYK AREG +K
Sbjct: 118 VPVEVAEQRDPKGLYKKAREGVIK 141

>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps Kinase From Aquifex Aeolicus, A Chemolithotrophic Thermophile Length = 546

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 87/134 (64%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
            ++G  +W+TGL  +GKST+A  L+  L  RG+   +LDGD  R  L+R L F  EDR+ 
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NI R+G VA        + I  L+SPYR  R+  R+M+ EG FIEVF+D P++VCE RD 
Sbjct: 429 NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488
Query: 219 KGLYKLAREGKVKG 232
           KGLYK A+EG +KG
Sbjct: 489 KGLYKKAKEGLIKG 502

>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195 Length = 186

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +KG V+W+TGL GSGK+T+A  L+  L   G    +LDGD  R  ++    F  E+R+ +
Sbjct: 11  EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARD 217
           ++RI  +A+L A  GVI I   +SPY++ R+  R ++ E    F+E+++   L+    RD
Sbjct: 71  LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130
Query: 218 PKGLYKLAREGKVK 231
           PKGLYK A +G+++
Sbjct: 131 PKGLYKKALKGELE 144

>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans Length = 552

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157
           +++G  ++ TGLSG+GKSTLA AL+ + +   G+   +LDGD  R  L+ +L F    R 
Sbjct: 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD 425
Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEAR 216
            N+RRIG VA        I I   I+PYR+ R   R+M+   G F+E+ +  P++ CE+R
Sbjct: 426 VNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESR 485
Query: 217 DPKGLYKLAREGKV 230
           D KGLY  AR G +
Sbjct: 486 DRKGLYAKARAGLI 499

>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The T-State Length = 573

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +G  I++TG   SGK  +A AL   L+ +G +   +L GD  RH L+ +L F  EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
           I+RI  VA     AG   IA  I+PY + R   R  + + G F  V +  PL+ CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKG 232
           +G+Y  AR G++KG
Sbjct: 515 RGIYAAARRGEIKG 528

>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium Chrysogenum Length = 573

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +G  I++TG   SGK  +A AL   L+ +G +   +L GD  RH L+ +L F  EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
           I+RI  VA     AG   IA  I+PY + R   R  + + G F  V +  PL+ CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKG 232
           +G+Y  AR G++KG
Sbjct: 515 RGIYAAARRGEIKG 528

>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144 From Janibacter Sp. Htcc2649), Unliganded Structure Length = 200

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166
           + G+SGSGK+T+A  ++                     + R +    EDR   +R + E 
Sbjct: 34  VMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93
Query: 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
               ADAGV  I    +  R  RD  R   P  DF+   +D P +V + R
Sbjct: 94  MDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLH--LDGPAEVIKGR 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	1e-104
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	3e-99
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	6e-93
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	5e-91
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	1e-86
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	8e-69
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	5e-66
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	8e-59
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	3e-25
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	5e-17
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	4e-16
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	4e-16
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	1e-15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	2e-15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	5e-15
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	1e-10
2vli_A	183	Antibiotic resistance protein; transferase, tunica	9e-09
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	2e-08
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	1e-07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	2e-04
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	2e-04
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	3e-04

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} PDB: 4fxp_A* Length = 200

 Score =  299 bits (767), Expect = e-104
 Identities = 129/154 (83%), Positives = 141/154 (91%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2   STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62  DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KG
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 155

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Length = 211

 Score =  286 bits (735), Expect = 3e-99
 Identities = 87/163 (53%), Positives = 105/163 (64%), Gaps = 9/163 (5%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L   L   R    Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121

Query: 198 EG--------DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
                      F+EV++DVP++V E RDPKGLYK AREG +K 
Sbjct: 122 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKE 164

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Length = 186

 Score =  269 bits (691), Expect = 6e-93
 Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 2/144 (1%)

Query: 91  KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150
           +        +KG V+W+TGL GSGK+T+A  L+  L   G    +LDGD  R  ++    
Sbjct: 2   QALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAG 61

Query: 151 FKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDV 208
           F  E+R+ +++RI  +A+L A  GVI I   +SPY++ R+  R ++ E    F+E+++  
Sbjct: 62  FTREERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKA 121

Query: 209 PLQVCEARDPKGLYKLAREGKVKG 232
            L+    RDPKGLYK A +G+++ 
Sbjct: 122 SLEEVIRRDPKGLYKKALKGELEN 145

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Length = 179

 Score =  264 bits (678), Expect = 5e-91
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 2/136 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
             +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R GLN++L F  EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEAR 216
           N+RRI EVAKLFADAG++CI   ISPY +DR+  R +       F EVF+D PL VCE R
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121

Query: 217 DPKGLYKLAREGKVKG 232
           D KGLYK AR G++KG
Sbjct: 122 DVKGLYKKARAGEIKG 137

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630

 Score =  268 bits (686), Expect = 1e-86
 Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 6/171 (3%)

Query: 68  NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQK----GCVIWITGLSGSGKSTLACALS 123
           +N  QN  + ++TN+ +  + V +  R Q++  +    GC +W+TGLSG+GK+T++ AL 
Sbjct: 14  SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + L   G   Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   IS
Sbjct: 74  EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133

Query: 184 PYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
           PY +DR+  R +       F EVF+D PL VCE RD KGLYK AR G++KG
Sbjct: 134 PYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 184

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Length = 552

 Score =  219 bits (560), Expect = 8e-69
 Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 5/177 (2%)

Query: 61  ESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKST 117
                      Q    A      W+       +        +++G  ++ TGLSG+GKST
Sbjct: 325 ARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKST 384

Query: 118 LACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176
           LA AL+  L   G     +LDGD  R  L+ +L F    R  N+RRIG VA        I
Sbjct: 385 LARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGI 444

Query: 177 CIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
            I   I+PYR+ R   R+M+   G F+E+ +  P++ CE+RD KGLY  AR G +  
Sbjct: 445 AICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPE 501

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546

 Score =  212 bits (540), Expect = 5e-66
 Identities = 65/156 (41%), Positives = 90/156 (57%)

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
                    + +    +      ++G  +W+TGL  +GKST+A  L+  L  RG+   +L
Sbjct: 347 KLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLL 406

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGD  R  L+R L F  EDR+ NI R+G VA        + I  L+SPYR  R+  R+M+
Sbjct: 407 DGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMM 466

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
            EG FIEVF+D P++VCE RD KGLYK A+EG +KG
Sbjct: 467 EEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKG 502

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573

 Score =  194 bits (493), Expect = 8e-59
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 2/157 (1%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-IL 136
                 + +     R+       +G  I++TG   SGK  +A AL   L+ +G  +  +L
Sbjct: 372 IPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
            GD  RH L+ +L F  EDR  NI+RI  VA     AG   IA  I+PY + R   R  +
Sbjct: 432 LGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAV 491

Query: 197 PE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG 232
            + G F  V +  PL+ CE  D +G+Y  AR G++KG
Sbjct: 492 SQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKG 528

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 98.8 bits (246), Expect = 3e-25
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
            +I +TGL G GKST +  L++ L        +L  D  R           E   E I++
Sbjct: 5   MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP----VWKEKYEEFIKK 60

Query: 163 IGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPK 219
                   A      I    + Y   R    ++  +   ++  +++   L V   R+ +
Sbjct: 61  STYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIE 119

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           Q   +I +TG   +GK+TL+ AL+  L        +L  D  +  +   L +   +    
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRR 57

Query: 160 IRRIG-----EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQV 212
           +           A     +G   I         D +  +++        I++       V
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 213 CEAR 216
              R
Sbjct: 118 LVER 121

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 72.5 bits (177), Expect = 4e-16
 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 14/130 (10%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQAL----------HWRGKLTYILDGDNCRHGLNRDLS 150
              +I + G S +GKS +   L   L               +   +         + D  
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 151 FKAEDRVENIRRI-GEVAKLFADAG--VICIACLISPYRKDRDACRSMLPEGDFIEVFMD 207
                    +     E     A AG  +I     +      ++  RS + + D + V + 
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAA-AQERWRSFVGDLDVLWVGVR 120

Query: 208 VPLQVCEARD 217
               V E R+
Sbjct: 121 CDGAVAEGRE 130

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 72.8 bits (178), Expect = 4e-16
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 85  HKNSVD-----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           H + VD        +  +  +    + + G+SGSGK+T+A  ++             + D
Sbjct: 7   HSSGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEAD 61

Query: 140 NCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
                 N       +    EDR   +R + E     ADAGV  I    +  R  RD  R 
Sbjct: 62  AFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLRE 121

Query: 195 MLPEGDFIEVFMDVPLQVCEAR 216
             P  DF  + +D P +V + R
Sbjct: 122 GPPSVDF--LHLDGPAEVIKGR 141

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 71.6 bits (175), Expect = 1e-15
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKA 153
                +  + G+SGSGKS +A  ++  LH        LDGD      N +          
Sbjct: 5   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLND 59

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
           +DR   ++ + + A        + +    +  +  RD  R   P  +   +++     V 
Sbjct: 60  DDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVI 117

Query: 214 EAR 216
           E+R
Sbjct: 118 ESR 120

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN--- 159
            +  ITG +G GKST    L+  L      +  ++GD   H +        E        
Sbjct: 3   KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGDIINHMVVGGYRPPWESDELLALT 58

Query: 160 IRRIGEVAKLFADAGVICIACLI---SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            + I ++   F  A    +   I             ++ + + +   + +    +    R
Sbjct: 59  WKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR 118

Query: 217 D 217
           D
Sbjct: 119 D 119

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 70.1 bits (171), Expect = 5e-15
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKA 153
              G ++ ++G  GSGKST+A AL+               D+    +        L    
Sbjct: 6   DLGGNILLLSGHPGSGKSTIAEALANLPGVPK---VHFHSDDLWGYIKHGRIDPWLPQSH 62

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFI--EVFMDVPLQ 211
           +     ++   +VA  +A  G   I   +        A  ++     +I         ++
Sbjct: 63  QQNRMIMQIAADVAGRYAKEGYFVILDGVV-RPDWLPAFTALARPLHYIVLRTTAAEAIE 121

Query: 212 VCEARDPKGL 221
            C  R    L
Sbjct: 122 RCLDRGGDSL 131

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 15/134 (11%)

Query: 88  SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR 147
           S++ +     +++    I + G+SGSGKS++  A+++A  +       ++GD      N 
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPF-----IEGDALHPPENI 58

Query: 148 D-----LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFI 202
                 +    +DR   +  IGE         V C A      R  RD  R   P G   
Sbjct: 59  RKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSA----LKRSYRDKLRESAP-GGLA 113

Query: 203 EVFMDVPLQVCEAR 216
            VF+     V   R
Sbjct: 114 FVFLHGSESVLAER 127

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 52.7 bits (126), Expect = 9e-09
 Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           +IWI G  G GK+  A  L + L           G   R       S   ++    I  +
Sbjct: 7   IIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLT-PGFSGDPQEHPMWIPLM 65

Query: 164 GEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            +  +  +      +I    +    R  R                +  PL V   R
Sbjct: 66  LDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLER 121

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 18/120 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-------EDR 156
           +I + G     KST+A  LS+ L +      I+ G +     + +            ED 
Sbjct: 3   LIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFELAKSGNEKLFEHFNKLADEDN 57

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
           V  I R      ++A         L       R     +  +     V++     V + R
Sbjct: 58  VI-IDRFVYSNLVYAKKFKDYSI-LTERQL--RFIEDKIKAKAKV--VYLHADPSVIKKR 111

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVE 158
           +I   G  GSGKST A              Y ++ D+ R  +       +  +  +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 159 NIRRIGEVAKLFADAGVICIACLIS---PYRKDRDACRSMLPE--GDFIEVFMDVPLQVC 213
                 + AK     G      +IS      + R A  +   E          DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARDPK 219
             R+ K
Sbjct: 120 VKRNSK 125

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 14/124 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVE 158
           +I   G  GSGKST A              Y ++ D+ R  +       +  +  +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 159 NIRRIGEVAKLFADAGVICIACLIS---PYRKDRDACRSMLPE--GDFIEVFMDVPLQVC 213
                 + AK     G      +IS      + R A  +   E          DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARD 217
             R+
Sbjct: 120 VKRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 31/207 (14%), Positives = 58/207 (28%), Gaps = 74/207 (35%)

Query: 81  NILWHKNSV-DKRD----------RQQLLQ-QKGCVIWITGLSGSGKSTLA--------- 119
           + L++ N V  K +          RQ LL+ +    + I G+ GSGK+ +A         
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 120 -CALSQALHW---------------RGKLTYILDGDNC-RHGLNRDLSFKAEDRVENIRR 162
            C +   + W                 KL Y +D +   R   + ++  +       +RR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 163 I------------------GEVAKLFA----------DAGVICIACLISPYRKDRDACRS 194
           +                   +    F              V       +      D    
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 195 MLPEGDFIEVFM--------DVPLQVC 213
            L   +   + +        D+P +V 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVL 323

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140
           V+ I GLS SGK+TLA  LSQ L  +G    +   D+
Sbjct: 24  VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 97  LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRHGLNRDLSFKA 153
            L  KG         GSGK+T    ++ AL   G    ++D D   +  +      +   
Sbjct: 6   FLNPKG---------GSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFD 56

Query: 154 EDRVENIRRIGEVAKLFADAGVICIAC 180
                + + +  + K  AD     +  
Sbjct: 57  VFTAASEKDVYGIRKDLADYDFAIVDG 83

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
           +I +TG SG+G ST+     Q     G     ++GD        D+  + + R      
Sbjct: 7   IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDA 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.89
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.89
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.89
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.89
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.89
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.88
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.87
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.87
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.87
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.87
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.87
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.87
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.86
1g6h_A	257	High-affinity branched-chain amino acid transport	99.86
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.86
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.86
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.86
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.86
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.86
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.86
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.86
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.86
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.85
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.85
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.84
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.84
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.84
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.83
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.82
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.82
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.82
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.82
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.81
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.81
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.8
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.79
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.79
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.79
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.78
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.77
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.76
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.73
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.7
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.7
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.63
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.63
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.63
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.59
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.54
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.53
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.53
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.51
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.42
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.41
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.37
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.35
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.33
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.32
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.31
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.31
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.3
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.3
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.25
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.25
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.25
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.25
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.24
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.24
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.23
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.23
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.23
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.22
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.22
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.22
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.19
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.17
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.15
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.14
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.12
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.12
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.1
2og2_A	359	Putative signal recognition particle receptor; nuc	99.08
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.08
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.06
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.06
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.05
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.03
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.01
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.01
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.01
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.0
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.99
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.99
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.98
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.97
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.94
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.94
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.93
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.91
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.89
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.87
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.86
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.85
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.84
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.83
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.82
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.82
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.82
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.81
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.79
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.78
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.78
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.74
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.73
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.73
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.72
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.72
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.71
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.7
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.7
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.7
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.68
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.68
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.67
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.67
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.66
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.64
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.63
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.62
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.61
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.61
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.6
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.6
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.6
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.57
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.54
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.53
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.52
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.5
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.5
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.48
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.48
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.47
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.46
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.45
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.44
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.44
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.42
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.41
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.39
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.3
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.28
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.28
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.27
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.25
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.25
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.21
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.2
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.2
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.17
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.15
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.15
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.14
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.14
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.14
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.12
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.1
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.09
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.08
3ice_A	422	Transcription termination factor RHO; transcriptio	98.06
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.05
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.02
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.01
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.99
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.98
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.94
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.93
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.88
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.85
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.83
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.83
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.82
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.77
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.77
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.76
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.75
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.7
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.69
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.69
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.68
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.68
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.66
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.64
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.59
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.58
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.55
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.55
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.54
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.53
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.52
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.52
1via_A	175	Shikimate kinase; structural genomics, transferase	97.5
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.49
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.48
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.48
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.48
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.47
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.47
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.46
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.46
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.46
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.45
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.45
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.44
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.43
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.43
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.43
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.42
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.42
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.41
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.41
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.41
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.4
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.4
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.4
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.38
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.35
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.34
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.33
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.33
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.32
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.3
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.27
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.27
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.27
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.26
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.25
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.25
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.24
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.23
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.23
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.22
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.22
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.21
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.2
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.19
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.19
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.18
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.18
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.17
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.14
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.13
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.13
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.08
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.07
3bos_A	242	Putative DNA replication factor; P-loop containing	97.05
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.04
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.03
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.03
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.98
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.98
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.98
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.97
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.96
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.93
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.92
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.92
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.87
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.87
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.86
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.83
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.83
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.82
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.82
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.82
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.8
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.8
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.79
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.79
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.78
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.77
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.73
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.73
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.73
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.72
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.72
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.71
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.7
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.69
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.68
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.67
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.67
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.66
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.64
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.63
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.62
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.62
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.62
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.61
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.61
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.61
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.59
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.59
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.58
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.58
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.58
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.56
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.55
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.55
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.55
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.55
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.54
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.53
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.53
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.53
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.52
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.51
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.5
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.49
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.49
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.48
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.48
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.47
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.47
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.46
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.46
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.45
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.45
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.43
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.43
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.43
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.43
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.43
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.41
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.39
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.38
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.38
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.35
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.33
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.32
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.31
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.31
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.3
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.29
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.28
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.27
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.27
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.26
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.26
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.25
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.25
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.25
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.24
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.24
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.24
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.24
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.24
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.22
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.22
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.22
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.22
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.21
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.21
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.2
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.2
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.19
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.18
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.18
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.17
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.16
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.16
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.16
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.15
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.15
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.15
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.13
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.12
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.12
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.09
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.09
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.08
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.08
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.07
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.07
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.07
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.07
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.06
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.06
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.05
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.05
3pvs_A	447	Replication-associated recombination protein A; ma	96.04
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.04
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.03
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.01
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.01
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.99
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.99
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.99
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.99
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.99
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.98
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.97
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.96
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.95
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.91
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.9
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.9
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.88
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.81
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.81
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.8
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.79
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.78
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.78
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.77
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.77
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.73
2qgz_A	308	Helicase loader, putative primosome component; str	95.73
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.73
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.73
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.71
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.69
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.69
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.67
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.66
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.66
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.65
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.64
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.64
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.62
3io5_A	333	Recombination and repair protein; storage dimer, i	95.61
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.61
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.6
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.6
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.59
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.56
3co5_A	143	Putative two-component system transcriptional RES	95.56
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.55
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.54
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.49
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.49
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.41
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.39
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.36

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.89  E-value=3.9e-24  Score=178.31  Aligned_cols=148  Identities=22%  Similarity=0.193  Sum_probs=107.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------c-c
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------N-R  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~-~  147 (234)
                      +++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....       . .
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~   82 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNR   82 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhC
Confidence            6889999999998899999999999999999999999999999999999998 99999999998874310       0 0


Q ss_pred             cCCCChh--------hHHHHHHH------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCce
Q 026725          148 DLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       148 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++.++        ...+++..            ...+...+...++..     ...++.+.+++...+++++..+.+ 
T Consensus        83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-  161 (224)
T 2pcj_A           83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL-  161 (224)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE-
T ss_pred             cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE-
Confidence            1111111        11111111            011222333333321     123455667778899999999998 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|||+..|+....+.+++.++
T Consensus       162 -llLDEPt~~LD~~~~~~~~~~l~  184 (224)
T 2pcj_A          162 -LFADEPTGNLDSANTKRVMDIFL  184 (224)
T ss_dssp             -EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             -EEEeCCCCCCCHHHHHHHHHHHH
Confidence             89999999998888877777664

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.89  E-value=4.2e-24  Score=179.37  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc-----
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~-----  146 (234)
                      +++++|+++.|++    ..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....     
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~   79 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTK   79 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHH
Confidence            3678999999963    469999999999999999999999999999999999998 999999999988743110     


Q ss_pred             ---ccCCCChh--------hHHHHHHH---------------HHHHHHHHHhcCce------EEEecCcccHHHHHHHHH
Q 026725          147 ---RDLSFKAE--------DRVENIRR---------------IGEVAKLFADAGVI------CIACLISPYRKDRDACRS  194 (234)
Q Consensus       147 ---~~~~~~~~--------~~~~~~~~---------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  194 (234)
                         ..+++.++        ...+++..               ...+...+...++.      ....++.+.+++...+++
T Consensus        80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra  159 (235)
T 3tif_A           80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (235)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               00111110        01111110               01122222322321      112345566778889999


Q ss_pred             hCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       195 ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++..+.+  +++|||+..|+......+++.++
T Consensus       160 l~~~p~l--lllDEPts~LD~~~~~~i~~~l~  189 (235)
T 3tif_A          160 LANNPPI--ILADQPTWALDSKTGEKIMQLLK  189 (235)
T ss_dssp             HTTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            9999999  89999999998888877777664

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.89  E-value=4.1e-24  Score=189.53  Aligned_cols=150  Identities=16%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             cccceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----
Q 026725           74 STVAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----  145 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----  145 (234)
                      .++++++|+++.|+.    ..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....    
T Consensus        22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHH
T ss_pred             CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHH
Confidence            347999999999963    569999999999999999999999999999999999998 99999999999885311    


Q ss_pred             ---cccCCCChh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026725          146 ---NRDLSFKAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       146 ---~~~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~  197 (234)
                         ...+++..+        ...+++...            ..+..++...++.     ....++.+.+++..++++++.
T Consensus       101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~  180 (366)
T 3tui_C          101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  180 (366)
T ss_dssp             HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence               011111111        011111110            0122222222221     112335566778889999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      .+.+  +++|||++.|+......+++.++
T Consensus       181 ~P~l--LLlDEPTs~LD~~~~~~i~~lL~  207 (366)
T 3tui_C          181 NPKV--LLCDQATSALDPATTRSILELLK  207 (366)
T ss_dssp             CCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             CCCE--EEEECCCccCCHHHHHHHHHHHH
Confidence            9999  89999999998888877777665

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.89  E-value=4e-24  Score=190.64  Aligned_cols=148  Identities=16%  Similarity=0.094  Sum_probs=107.8

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      .++++|+++.|++..+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.....  ..+++..
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~Vf   81 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVF   81 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEe
Confidence            4789999999999999999999999999999999999999999999999998 999999999998854221  1111111


Q ss_pred             hh--------HHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 ED--------RVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~~--------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++        ..+++.+.            ..+..++...++.     ....++.+.+++..++++++..+.+  +++||
T Consensus        82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l--LLLDE  159 (381)
T 3rlf_A           82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDE  159 (381)
T ss_dssp             TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE--EEEES
T ss_pred             cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence            11        11111110            0122223322321     1233456677888999999999999  89999


Q ss_pred             ChhhhhhcchhhHHHHHH
Q 026725          209 PLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~  226 (234)
                      |++.|+...+..+++.++
T Consensus       160 Pts~LD~~~~~~l~~~l~  177 (381)
T 3rlf_A          160 PLSNLDAALRVQMRIEIS  177 (381)
T ss_dssp             TTTTSCHHHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHH
Confidence            999998887777776654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.89  E-value=5.9e-24  Score=181.61  Aligned_cols=146  Identities=18%  Similarity=0.231  Sum_probs=106.6

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--------
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--------  146 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--------  146 (234)
                      ++++++|+++.|++..+|+++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....        
T Consensus        10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCCHHHHhheEE
Confidence            47899999999999999999999999999999999999999999999999998 999999999998753210        


Q ss_pred             ---cc----CCCChhhHHHHHHH----------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC------C
Q 026725          147 ---RD----LSFKAEDRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP------E  198 (234)
Q Consensus       147 ---~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~------~  198 (234)
                         ..    ..++..+   ++..          ...+...+...++.     ....++.+.+++...+++++.      .
T Consensus        89 ~v~q~~~~~~~~tv~e---~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           89 VMRQYSELAFPFSVSE---VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             EECSCCCCCSCCBHHH---HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             EEecCCccCCCCCHHH---HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence               00    0111111   1100          00122223322321     123345667778889999987      8


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +.+  +++|||++.|+......+++.++
T Consensus       166 p~l--LllDEPts~LD~~~~~~i~~~l~  191 (266)
T 4g1u_C          166 PRW--LFLDEPTSALDLYHQQHTLRLLR  191 (266)
T ss_dssp             CEE--EEECCCCSSCCHHHHHHHHHHHH
T ss_pred             CCE--EEEeCccccCCHHHHHHHHHHHH
Confidence            888  89999999998888777776654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.88  E-value=7.4e-23  Score=181.26  Aligned_cols=147  Identities=16%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc----ccc--cccC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGL--NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~----~~~--~~~~  149 (234)
                      +++++|+++.|++..+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.    ...  ...+
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~i   82 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRL   82 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCE
Confidence            5889999999999999999999999999999999999999999999999998 99999999999872    110  0111


Q ss_pred             CCChhh--------HHHHHHH------------HHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          150 SFKAED--------RVENIRR------------IGEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++..++        ..+++.+            ...+..++...++     .....++.+.+++...+++++..+.+  +
T Consensus        83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l--L  160 (359)
T 3fvq_A           83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL--I  160 (359)
T ss_dssp             EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--E
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            111111        0111100            0012222222222     12233456677888999999999999  8


Q ss_pred             EEeCChhhhhhcchhhHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      ++|||++.|+...+..+++.+
T Consensus       161 LLDEPts~LD~~~r~~l~~~l  181 (359)
T 3fvq_A          161 LLDEPFSALDEQLRRQIREDM  181 (359)
T ss_dssp             EEESTTTTSCHHHHHHHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHH
Confidence            999999999888877776543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.88  E-value=2.3e-23  Score=178.68  Aligned_cols=149  Identities=16%  Similarity=0.177  Sum_probs=106.7

Q ss_pred             ccceeeceeeecCC-ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc------ccc
Q 026725           75 TVAKSTNILWHKNS-VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~------~~~  147 (234)
                      ++++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++...      ...
T Consensus         6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~   84 (275)
T 3gfo_A            6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSRKGIMKLRE   84 (275)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCCSHHHHHHHHH
T ss_pred             cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEECCEECCcccccHHHHhC
Confidence            47899999999975 459999999999999999999999999999999999998 9999999999987310      000


Q ss_pred             cCCCChh---------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          148 DLSFKAE---------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       148 ~~~~~~~---------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      .+++.++         ...+++...            ..+...+...++.     ....++.+.+++...+++++..+.+
T Consensus        85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l  164 (275)
T 3gfo_A           85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV  164 (275)
T ss_dssp             SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            1111111         111111110            0122223333321     1233456677888999999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHH
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                        +++|||++.|+......+++.++
T Consensus       165 --LlLDEPts~LD~~~~~~i~~~l~  187 (275)
T 3gfo_A          165 --LILDEPTAGLDPMGVSEIMKLLV  187 (275)
T ss_dssp             --EEEECTTTTCCHHHHHHHHHHHH
T ss_pred             --EEEECccccCCHHHHHHHHHHHH
Confidence              89999999998888777776664

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.87  E-value=4.9e-23  Score=183.42  Aligned_cols=148  Identities=18%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      +++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  +.+++..
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEe
Confidence            5889999999998899999999999999999999999999999999999998 999999999998753211  1111111


Q ss_pred             hhH--------HHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 EDR--------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~~~--------~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++.        .+++.+            -..+..++...++.     ....++.+.+++...+++++..+.+  +++||
T Consensus        90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDE  167 (372)
T 1v43_A           90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDE  167 (372)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEES
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            110        011100            00122233333321     1233466778888999999999999  89999


Q ss_pred             ChhhhhhcchhhHHHHHH
Q 026725          209 PLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~  226 (234)
                      |++.|+...+..+++.++
T Consensus       168 P~s~LD~~~r~~l~~~l~  185 (372)
T 1v43_A          168 PLSNLDAKLRVAMRAEIK  185 (372)
T ss_dssp             TTTTSCHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHH
Confidence            999998888887776664

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.87  E-value=3.3e-23  Score=183.76  Aligned_cols=148  Identities=16%  Similarity=0.091  Sum_probs=107.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      +++++|++++|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  ..+++..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVF   81 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEe
Confidence            4788999999998899999999999999999999999999999999999998 999999999998753211  1111111


Q ss_pred             h--------hHHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 E--------DRVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      +        ...+++.+            -..+..++...++.     ....++.+.+++...+++++..+.+  +++||
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l--LLLDE  159 (359)
T 2yyz_A           82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV--LLFDE  159 (359)
T ss_dssp             SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence            1        01111110            00122233333321     1233456677888999999999999  89999


Q ss_pred             ChhhhhhcchhhHHHHHH
Q 026725          209 PLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~  226 (234)
                      |++.|+...+..+++.++
T Consensus       160 P~s~LD~~~r~~l~~~l~  177 (359)
T 2yyz_A          160 PLSNLDANLRMIMRAEIK  177 (359)
T ss_dssp             TTTTSCHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999998888877776654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.87  E-value=4.2e-22  Score=167.61  Aligned_cols=149  Identities=14%  Similarity=0.156  Sum_probs=106.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....     ...+
T Consensus         5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i   83 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCE
Confidence            46899999999998889999999999999999999999999999999999998 99999999998874210     0001


Q ss_pred             CCChh--------hHHHHHHH-----------HHHHHHHHHhc------CceEEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          150 SFKAE--------DRVENIRR-----------IGEVAKLFADA------GVICIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       150 ~~~~~--------~~~~~~~~-----------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                      ++.++        ...+++..           ...+..++..+      .......++.+.+++...+++++..+.+  +
T Consensus        84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--l  161 (240)
T 1ji0_A           84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--L  161 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--E
T ss_pred             EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            11100        00111100           00111111111      1122234556677888899999999999  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++|||+..|+....+.+++.++
T Consensus       162 lLDEPts~LD~~~~~~l~~~l~  183 (240)
T 1ji0_A          162 MMDEPSLGLAPILVSEVFEVIQ  183 (240)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHH
T ss_pred             EEcCCcccCCHHHHHHHHHHHH
Confidence            9999999998888888777665

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.87  E-value=4.2e-23  Score=183.23  Aligned_cols=148  Identities=18%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      +++++|++++|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  ..+++..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVF   81 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEe
Confidence            4788999999998889999999999999999999999999999999999998 999999999998753211  1111111


Q ss_pred             h--------hHHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 E--------DRVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~--------~~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      +        ...+++.+.            ..+...+...++..     ...++.+.+++...+++++..+.+  +++||
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDE  159 (362)
T 2it1_A           82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV--LLLDE  159 (362)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence            1        111211110            11222333333311     123456677888999999999999  89999


Q ss_pred             ChhhhhhcchhhHHHHHH
Q 026725          209 PLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~  226 (234)
                      |++.|+...+..+++.++
T Consensus       160 P~s~LD~~~r~~l~~~l~  177 (362)
T 2it1_A          160 PLSNLDALLRLEVRAELK  177 (362)
T ss_dssp             GGGGSCHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHH
Confidence            999998888887777664

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.87  E-value=4e-23  Score=182.89  Aligned_cols=149  Identities=14%  Similarity=0.150  Sum_probs=108.9

Q ss_pred             ccceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCC
Q 026725           75 TVAKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~  151 (234)
                      .+++++|+++.| ++.++++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....  ...+++
T Consensus        13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~   91 (355)
T 1z47_A           13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGL   91 (355)
T ss_dssp             EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEE
T ss_pred             ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEE
Confidence            368899999999 88889999999999999999999999999999999999998 99999999999875321  111222


Q ss_pred             Chhh--------HHHHHHHH------------HHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEE
Q 026725          152 KAED--------RVENIRRI------------GEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFM  206 (234)
Q Consensus       152 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~l  206 (234)
                      ..++        ..+++.+.            ..+..++...++..     ...++.+.+++...+++++..+.+  +++
T Consensus        92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLL  169 (355)
T 1z47_A           92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV--LLF  169 (355)
T ss_dssp             ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred             EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            1111        11211110            11222333333311     123455667788999999999999  899


Q ss_pred             eCChhhhhhcchhhHHHHHH
Q 026725          207 DVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       207 d~P~~~l~~R~~~~l~~~~~  226 (234)
                      |||++.|+...+..+++.++
T Consensus       170 DEP~s~LD~~~r~~l~~~l~  189 (355)
T 1z47_A          170 DEPFAAIDTQIRRELRTFVR  189 (355)
T ss_dssp             ESTTCCSSHHHHHHHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHH
Confidence            99999998888887777654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.87  E-value=4.1e-22  Score=165.00  Aligned_cols=146  Identities=16%  Similarity=0.204  Sum_probs=106.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh-
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-  154 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~-  154 (234)
                      .++++|+++.|++ ++++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .....+++.++ 
T Consensus        10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~-~~~~~i~~v~q~   86 (214)
T 1sgw_A           10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT-KVKGKIFFLPEE   86 (214)
T ss_dssp             EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG-GGGGGEEEECSS
T ss_pred             eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhh-hhcCcEEEEeCC
Confidence            6899999999988 99999999999999999999999999999999999998 99999999998763 11111111110 


Q ss_pred             -------hHHHHHHHH----------HHHHHHHHhcCceE----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          155 -------DRVENIRRI----------GEVAKLFADAGVIC----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       155 -------~~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                             ...+++...          ..+...+..+++..    ...++.+.+++...+++++..+.+  +++|||+..|
T Consensus        87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l--llLDEPts~L  164 (214)
T 1sgw_A           87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAI  164 (214)
T ss_dssp             CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTS
T ss_pred             CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCC
Confidence                   111222110          01222333333321    123455667778899999999999  8999999999


Q ss_pred             hhcchhhHHHHHH
Q 026725          214 EARDPKGLYKLAR  226 (234)
Q Consensus       214 ~~R~~~~l~~~~~  226 (234)
                      +......+++.++
T Consensus       165 D~~~~~~l~~~l~  177 (214)
T 1sgw_A          165 DEDSKHKVLKSIL  177 (214)
T ss_dssp             CTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9888888777665

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.87  E-value=7e-22  Score=168.48  Aligned_cols=148  Identities=17%  Similarity=0.187  Sum_probs=107.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc--ccc----cccC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HGL----NRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~--~~~----~~~~  149 (234)
                      +++++|+++.|++..+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.  ...    ...+
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i  102 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEV  102 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcE
Confidence            6899999999998899999999999999999999999999999999999998 99999999998873  000    0001


Q ss_pred             CCChh--------hHHHHHHH-------------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceE
Q 026725          150 SFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       150 ~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      ++.++        ...+++..             ...+...+...++..     ...++.+.+++...+++++..+.+  
T Consensus       103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l--  180 (263)
T 2olj_A          103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI--  180 (263)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE--
Confidence            11111        11111111             011222333333321     123455667778899999999998  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHH
Q 026725          204 VFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +++|||+..|+......+++.++
T Consensus       181 llLDEPts~LD~~~~~~~~~~l~  203 (263)
T 2olj_A          181 MLFDEPTSALDPEMVGEVLSVMK  203 (263)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Confidence            89999999998888877777664

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.86  E-value=1.2e-21  Score=166.37  Aligned_cols=150  Identities=13%  Similarity=0.155  Sum_probs=108.4

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLS  150 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~  150 (234)
                      .++++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....   ...++
T Consensus        13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~   91 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLIS   91 (256)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEE
T ss_pred             CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEE
Confidence            357899999999998899999999999999999999999999999999999998 99999999998864210   00111


Q ss_pred             CChh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026725          151 FKAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVF  205 (234)
Q Consensus       151 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~  205 (234)
                      +.++        ...+++...            ..+...+...++.     ....++.+.+++...+++++..+.+  ++
T Consensus        92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--ll  169 (256)
T 1vpl_A           92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AI  169 (256)
T ss_dssp             EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EE
Confidence            1111        111111110            0122223333321     1223455677788899999999999  89


Q ss_pred             EeCChhhhhhcchhhHHHHHH
Q 026725          206 MDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       206 ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +|||+..|+......+++.++
T Consensus       170 LDEPts~LD~~~~~~l~~~l~  190 (256)
T 1vpl_A          170 LDEPTSGLDVLNAREVRKILK  190 (256)
T ss_dssp             EESTTTTCCHHHHHHHHHHHH
T ss_pred             EeCCccccCHHHHHHHHHHHH
Confidence            999999998888888777665

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.86  E-value=6.9e-22  Score=167.92  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~  149 (234)
                      ++++++|+++.|++.++++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....     ...+
T Consensus         6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i   84 (257)
T 1g6h_A            6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGI   84 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCE
Confidence            46899999999999899999999999999999999999999999999999998 99999999998874210     0011


Q ss_pred             CCChhh--------HHHHHHH-------------------------HHHHHHHHHhcCce-----EEEecCcccHHHHHH
Q 026725          150 SFKAED--------RVENIRR-------------------------IGEVAKLFADAGVI-----CIACLISPYRKDRDA  191 (234)
Q Consensus       150 ~~~~~~--------~~~~~~~-------------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  191 (234)
                      ++.+++        ..+++..                         ...+...+...++.     ....++.+.+++...
T Consensus        85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i  164 (257)
T 1g6h_A           85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI  164 (257)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence            111110        0011100                         00122223333321     122345566777889


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++++..+.+  +++|||++.|+......+++.+++
T Consensus       165 AraL~~~p~l--llLDEPts~LD~~~~~~l~~~l~~  198 (257)
T 1g6h_A          165 GRALMTNPKM--IVMDEPIAGVAPGLAHDIFNHVLE  198 (257)
T ss_dssp             HHHHHTCCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            9999999998  899999999988888887776653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.86  E-value=4e-22  Score=171.36  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=108.1

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc--ccc----cc
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HGL----NR  147 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~--~~~----~~  147 (234)
                      .++++++|+++.|++.++++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.  ...    ..
T Consensus        19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~   97 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQ   97 (279)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHT
T ss_pred             CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcC
Confidence            347899999999998899999999999999999999999999999999999998 99999999998774  110    01


Q ss_pred             cCCCChhh----------HHHHHHH----------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhC
Q 026725          148 DLSFKAED----------RVENIRR----------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSML  196 (234)
Q Consensus       148 ~~~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll  196 (234)
                      .+++.+++          ..+++..                ...+...+...++.     ....++.+.+++...+++++
T Consensus        98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~  177 (279)
T 2ihy_A           98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM  177 (279)
T ss_dssp             TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence            11121111          0111100                01122223333321     12234556677788999999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ..+.+  +++|||+..|+....+.+++.++
T Consensus       178 ~~p~l--LlLDEPts~LD~~~~~~l~~~l~  205 (279)
T 2ihy_A          178 GQPQV--LILDEPAAGLDFIARESLLSILD  205 (279)
T ss_dssp             TCCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             CCCCE--EEEeCCccccCHHHHHHHHHHHH
Confidence            99999  89999999998888888777664

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.86  E-value=1e-21  Score=167.30  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=106.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc----------c-
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------G-  144 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~----------~-  144 (234)
                      +++++|+++.|++..+++|+||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++..          . 
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~   84 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVAD   84 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEccccccccccccccC
Confidence            6899999999998899999999999999999999999999999999999998 999999999988741          0 


Q ss_pred             ------ccccCCCChh--------hHHHHHHH-------------HHHHHHHHHhcCceEE------EecCcccHHHHHH
Q 026725          145 ------LNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVICI------ACLISPYRKDRDA  191 (234)
Q Consensus       145 ------~~~~~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  191 (234)
                            ....+++.++        ...+++..             ...+...+...++...      ..++.+.+++...
T Consensus        85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l  164 (262)
T 1b0u_A           85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  164 (262)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence                  0000111111        11111111             0112223333333211      2345566777889


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +++++..+.+  +++|||+..|+......+++.++
T Consensus       165 AraL~~~p~l--llLDEPts~LD~~~~~~~~~~l~  197 (262)
T 1b0u_A          165 ARALAMEPDV--LLFDEPTSALDPELVGEVLRIMQ  197 (262)
T ss_dssp             HHHHHTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            9999999999  89999999998888877777664

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.86  E-value=1.8e-22  Score=170.63  Aligned_cols=149  Identities=21%  Similarity=0.175  Sum_probs=103.8

Q ss_pred             cceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      -++++|+++.|  ++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.....    ..+
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~i   85 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQV   85 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhcE
Confidence            46789999999  46789999999999999999999999999999999999998 999999999988743100    001


Q ss_pred             CCChh-------hHHHHHHHH------HHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE-------DRVENIRRI------GEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~-------~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.++       ...+++...      ..+...+...++.                ....++.+.+++...+++++..+.
T Consensus        86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~  165 (247)
T 2ff7_A           86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  165 (247)
T ss_dssp             EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            11000       011111000      0010111111110                012345667788889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||+..|+....+.+++.+++
T Consensus       166 l--llLDEPts~LD~~~~~~i~~~l~~  190 (247)
T 2ff7_A          166 I--LIFDEATSALDYESEHVIMRNMHK  190 (247)
T ss_dssp             E--EEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9  899999999988888888777654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.86  E-value=1.1e-22  Score=176.98  Aligned_cols=149  Identities=13%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      .++++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|++. |++|+|.++|+++.....    ..++
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G~~i~~~~~~~~r~~i~  131 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-ISSGCIRIDGQDISQVTQASLRSHIG  131 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-CSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCcEEEECCEEcccCCHHHHhcceE
Confidence            588999999995 5789999999999999999999999999999999999998 999999999998753210    0011


Q ss_pred             CChh-------hHHHHHH------------HHHHH---HHHHHhc--CceEE-----EecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAE-------DRVENIR------------RIGEV---AKLFADA--GVICI-----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~-------~~~~~~~------------~~~~~---~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.++       ...+++.            .....   .......  ++...     ..++.+.+++..++++++..+.+
T Consensus       132 ~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i  211 (306)
T 3nh6_A          132 VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI  211 (306)
T ss_dssp             EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence            1110       0111110            00000   1111111  11111     23456677888999999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.|+......+++.+++
T Consensus       212 --LlLDEPts~LD~~~~~~i~~~l~~  235 (306)
T 3nh6_A          212 --ILLDEATSALDTSNERAIQASLAK  235 (306)
T ss_dssp             --EEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             --EEEECCcccCCHHHHHHHHHHHHH
Confidence              899999999988887777776653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.86  E-value=3.1e-22  Score=171.38  Aligned_cols=150  Identities=18%  Similarity=0.172  Sum_probs=106.6

Q ss_pred             ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----c
Q 026725           75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----R  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~  147 (234)
                      .+++++|+++.|++   ..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++.....    .
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEcccCCHHHHhc
Confidence            36899999999986   789999999999999999999999999999999999998 999999999988742100    0


Q ss_pred             cCCCChh-------hHHHHHHH--------------H--HHHHHHHHhc--Cce-----EEEecCcccHHHHHHHHHhCC
Q 026725          148 DLSFKAE-------DRVENIRR--------------I--GEVAKLFADA--GVI-----CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       148 ~~~~~~~-------~~~~~~~~--------------~--~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ll~  197 (234)
                      .+++.++       ...+++..              .  ..+...+...  ++.     ....++.+.+++...+++++.
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            0111000       11111100              0  0011112211  111     112345566778889999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..|+....+.+++.+++
T Consensus       174 ~p~l--llLDEPts~LD~~~~~~i~~~l~~  201 (271)
T 2ixe_A          174 KPRL--LILDNATSALDAGNQLRVQRLLYE  201 (271)
T ss_dssp             CCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence            9999  899999999998888888887764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.86  E-value=1.4e-22  Score=170.87  Aligned_cols=148  Identities=15%  Similarity=0.123  Sum_probs=104.8

Q ss_pred             ceeeceeeec-CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cccCCC
Q 026725           77 AKSTNILWHK-NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (234)
Q Consensus        77 ~~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~~~~  151 (234)
                      ++++|+++.| ++..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....    ...+++
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            6789999999 67789999999999999999999999999999999999998 99999999998864211    111111


Q ss_pred             Chh-------hHHHHHHH-------HHHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          152 KAE-------DRVENIRR-------IGEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       152 ~~~-------~~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      .++       ...+++..       -..+...+...++.                ....++.+.+++...+++++..+.+
T Consensus        81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  160 (243)
T 1mv5_A           81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (243)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence            111       01111100       00111111111110                0123456677788899999999998


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||+..|+....+.+++.+++
T Consensus       161 --llLDEPts~LD~~~~~~i~~~l~~  184 (243)
T 1mv5_A          161 --LMLDEATASLDSESESMVQKALDS  184 (243)
T ss_dssp             --EEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             --EEEECCcccCCHHHHHHHHHHHHH
Confidence              899999999999998888877654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.86  E-value=6.3e-22  Score=175.29  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=107.7

Q ss_pred             cceeeceeeecCCcc--ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc-----cc--c
Q 026725           76 VAKSTNILWHKNSVD--KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GL--N  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~-----~~--~  146 (234)
                      +++++|++++|++..  +++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..     ..  .
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhh
Confidence            478899999999888  9999999999999999999999999999999999998 999999999988743     11  1


Q ss_pred             ccCCCChhh--------HHHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCc
Q 026725          147 RDLSFKAED--------RVENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       147 ~~~~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      ..+++..++        ..+++.+            -..+..++...++.     ....++.+.+++...+++++..+.+
T Consensus        82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l  161 (353)
T 1oxx_K           82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (353)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            111111110        1111100            01122233333321     1233456677888999999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHH
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                        +++|||++.|+...+..+++.++
T Consensus       162 --LLLDEP~s~LD~~~r~~l~~~l~  184 (353)
T 1oxx_K          162 --LLLDEPFSNLDARMRDSARALVK  184 (353)
T ss_dssp             --EEEESTTTTSCGGGHHHHHHHHH
T ss_pred             --EEEECCcccCCHHHHHHHHHHHH
Confidence              89999999999988888877665

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.86  E-value=8.6e-22  Score=175.49  Aligned_cols=148  Identities=16%  Similarity=0.120  Sum_probs=107.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc------cc--cc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GL--NR  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~------~~--~~  147 (234)
                      +++++|++++|++..+++++||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..      ..  ..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r   81 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDR   81 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHC
Confidence            4788999999998899999999999999999999999999999999999998 999999999988743      11  11


Q ss_pred             cCCCChh--------hHHHHHHHH------------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCce
Q 026725          148 DLSFKAE--------DRVENIRRI------------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       148 ~~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++..+        ...+++.+.            ..+..++...++.     ....++.+.+++...+++++..+.+ 
T Consensus        82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-  160 (372)
T 1g29_1           82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV-  160 (372)
T ss_dssp             SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE-
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            1111111        111111110            0122223322321     1233456677888999999999999 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|||++.|+...+..+++.++
T Consensus       161 -LLLDEP~s~LD~~~r~~l~~~l~  183 (372)
T 1g29_1          161 -FLMDEPLSNLDAKLRVRMRAELK  183 (372)
T ss_dssp             -EEEECTTTTSCHHHHHHHHHHHH
T ss_pred             -EEECCCCccCCHHHHHHHHHHHH
Confidence             89999999998888877776664

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.85  E-value=1.9e-21  Score=171.81  Aligned_cols=146  Identities=15%  Similarity=0.172  Sum_probs=106.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~~  154 (234)
                      ++++|++++|++. +++++||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  +.+++..+
T Consensus         2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q   79 (348)
T 3d31_A            2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQ   79 (348)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred             EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEec
Confidence            6789999999888 9999999999999999999999999999999999998 999999999998753110  11111111


Q ss_pred             --------hHHHHHHHH---------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          155 --------DRVENIRRI---------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       155 --------~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                              ...+++.+.         ..+..++...++.     ....++.+.+++...+++++..+.+  +++|||++.
T Consensus        80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l--LLLDEP~s~  157 (348)
T 3d31_A           80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSA  157 (348)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTT
T ss_pred             CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECcccc
Confidence                    111222111         1122233333321     1123455667788899999999999  899999999


Q ss_pred             hhhcchhhHHHHHH
Q 026725          213 CEARDPKGLYKLAR  226 (234)
Q Consensus       213 l~~R~~~~l~~~~~  226 (234)
                      |+...+..+++.++
T Consensus       158 LD~~~~~~l~~~l~  171 (348)
T 3d31_A          158 LDPRTQENAREMLS  171 (348)
T ss_dssp             SCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            98888887777664

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.85  E-value=3.7e-21  Score=162.76  Aligned_cols=149  Identities=16%  Similarity=0.102  Sum_probs=105.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh--cccCCccEEEEcCccccccc-----ccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKLTYILDGDNCRHGL-----NRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl--l~~p~~G~i~~~g~~v~~~~-----~~~  148 (234)
                      +++++|+++.|++..+++++||++++||+++|+||||||||||+|+|+|+  ++ |++|+|.++|+++....     ...
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~~~~~~~~~~~~~~   81 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-VERGEILLDGENILELSPDERARKG   81 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEECTTSCHHHHHHTT
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEECCCCCHHHHHhCc
Confidence            57899999999988999999999999999999999999999999999998  66 89999999998874311     001


Q ss_pred             CCCChhh--------HHHHHHH---------------HHHHHHHHHhcCce------EEEe-cCcccHHHHHHHHHhCCC
Q 026725          149 LSFKAED--------RVENIRR---------------IGEVAKLFADAGVI------CIAC-LISPYRKDRDACRSMLPE  198 (234)
Q Consensus       149 ~~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~ll~~  198 (234)
                      +++.+++        ..+++..               ...+...+...++.      .... ++.+.+++...+++++..
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~  161 (250)
T 2d2e_A           82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE  161 (250)
T ss_dssp             BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred             EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence            1121110        0111110               01122223323321      1123 566677888899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||+..|+......+++.+++
T Consensus       162 p~l--llLDEPts~LD~~~~~~l~~~l~~  188 (250)
T 2d2e_A          162 PTY--AVLDETDSGLDIDALKVVARGVNA  188 (250)
T ss_dssp             CSE--EEEECGGGTTCHHHHHHHHHHHHH
T ss_pred             CCE--EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            998  899999999988888888877754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.84  E-value=1e-21  Score=175.91  Aligned_cols=149  Identities=15%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             ccceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026725           75 TVAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~  148 (234)
                      ..++++|+++.|  ++..+|+++||+|++||+++|+||||||||||+|+|+|+++  ++|+|+++|+++.....    ..
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~   95 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKA   95 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHT
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCC
Confidence            358899999999  67889999999999999999999999999999999999875  68999999998753210    01


Q ss_pred             CCCChh-------hHHHHHHH-----HHHHHHHHHhcCceEE-----E-----------ecCcccHHHHHHHHHhCCCCC
Q 026725          149 LSFKAE-------DRVENIRR-----IGEVAKLFADAGVICI-----A-----------CLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       149 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +++..+       ...+++..     -..+...+...++...     .           .++.+.+++...+++++..+.
T Consensus        96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~  175 (390)
T 3gd7_A           96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  175 (390)
T ss_dssp             EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence            111111       11111100     0011111111111000     0           145566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.|+...+..+++.+++
T Consensus       176 l--LLLDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          176 I--LLLDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             E--EEEESHHHHSCHHHHHHHHHHHHT
T ss_pred             E--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            9  899999999998888888888775

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.84  E-value=1.2e-20  Score=160.96  Aligned_cols=148  Identities=16%  Similarity=0.214  Sum_probs=105.4

Q ss_pred             cceeeceeeecC--C---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-ccccC
Q 026725           76 VAKSTNILWHKN--S---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~--~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~~~~~  149 (234)
                      +++++|+++.|+  +   +.+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++... ....+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i   80 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNI   80 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhE
Confidence            478899999997  4   679999999999999999999999999999999999998 9999999999876310 00001


Q ss_pred             CCChh---------hHHHHHHHH-----------HHHHHHHHhcCce--E-----EEecCcccHHHHHHHHHhCCCCCce
Q 026725          150 SFKAE---------DRVENIRRI-----------GEVAKLFADAGVI--C-----IACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       150 ~~~~~---------~~~~~~~~~-----------~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      ++.++         ...+++...           ..+...+...++.  .     ...++.+.+++...+++++..+.+ 
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l-  159 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI-  159 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE-
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE-
Confidence            11111         111111110           0122233333332  1     123455667788899999999999 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|||+..|+....+.+++.++
T Consensus       160 -llLDEPts~LD~~~~~~l~~~l~  182 (266)
T 2yz2_A          160 -LILDEPLVGLDREGKTDLLRIVE  182 (266)
T ss_dssp             -EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             -EEEcCccccCCHHHHHHHHHHHH
Confidence             89999999998888888777665

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.84  E-value=1.1e-20  Score=161.48  Aligned_cols=150  Identities=14%  Similarity=0.028  Sum_probs=107.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc--ccCCccEEEEcCccccccc-----cc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCRHGL-----NR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll--~~p~~G~i~~~g~~v~~~~-----~~  147 (234)
                      ++++++|+++.|++..+++|+||++++|++++|+||||||||||+|+|+|++  . |++|+|.++|+++....     ..
T Consensus        19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~i~~~~~~~~~~~   97 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-VTGGTVEFKGKDLLALSPEDRAGE   97 (267)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEEGGGSCHHHHHHH
T ss_pred             ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCcCCHHHHhhC
Confidence            4789999999999889999999999999999999999999999999999984  4 78999999998874211     00


Q ss_pred             cCCCChhh--------HHHHHHH-------------------HHHHHHHHHhcCce------EEE-ecCcccHHHHHHHH
Q 026725          148 DLSFKAED--------RVENIRR-------------------IGEVAKLFADAGVI------CIA-CLISPYRKDRDACR  193 (234)
Q Consensus       148 ~~~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~  193 (234)
                      .+++.+++        ..+++..                   ...+...+...++.      ... .++.+.+++...++
T Consensus        98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr  177 (267)
T 2zu0_C           98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  177 (267)
T ss_dssp             TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred             CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence            01111110        0011100                   00122233333331      111 25566677888999


Q ss_pred             HhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       194 ~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++..+.+  +++|||+..|+......+++.+++
T Consensus       178 aL~~~p~l--LlLDEPts~LD~~~~~~l~~~l~~  209 (267)
T 2zu0_C          178 MAVLEPEL--CILDESDSGLDIDALKVVADGVNS  209 (267)
T ss_dssp             HHHHCCSE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             HHHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999  899999999999888888888764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.83  E-value=9e-21  Score=159.56  Aligned_cols=144  Identities=17%  Similarity=0.160  Sum_probs=103.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--cccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--~~~~~~~~~  154 (234)
                      ++++|+++.|++  +++++||++++ ++++|+||||||||||+|+|+|+++ |++|+|.++|+++....  ...+++.++
T Consensus         2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q   77 (240)
T 2onk_A            2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQ   77 (240)
T ss_dssp             CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred             EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcC
Confidence            678999999976  49999999999 9999999999999999999999998 99999999998874211  111222111


Q ss_pred             h--------HHHHHHH----------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          155 D--------RVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       155 ~--------~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      +        ..+++..          ...+...+...++.     ....++.+.+++...+++++..+.+  +++|||+.
T Consensus        78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l--llLDEPts  155 (240)
T 2onk_A           78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLS  155 (240)
T ss_dssp             SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTS
T ss_pred             CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcc
Confidence            1        1111110          01222333333331     1233456677788899999999999  89999999


Q ss_pred             hhhhcchhhHHHHHH
Q 026725          212 VCEARDPKGLYKLAR  226 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~  226 (234)
                      .|+....+.+++.++
T Consensus       156 ~LD~~~~~~~~~~l~  170 (240)
T 2onk_A          156 AVDLKTKGVLMEELR  170 (240)
T ss_dssp             SCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            998888887777664

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.82  E-value=2.7e-20  Score=158.62  Aligned_cols=146  Identities=16%  Similarity=0.084  Sum_probs=106.4

Q ss_pred             ceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc-ccccCC-
Q 026725           77 AKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS-  150 (234)
Q Consensus        77 ~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~-~~~~~~-  150 (234)
                      ++++|+++.|++    ..+++++||+++ |++++|+||||||||||+|+|+|++  |++|+|.++|+++... ....++ 
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEE
Confidence            678999999987    789999999999 9999999999999999999999987  7899999999876421 011233 


Q ss_pred             CChhh------HHHHHHHH--------HHHHHHHHhcCce-E-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCCh
Q 026725          151 FKAED------RVENIRRI--------GEVAKLFADAGVI-C-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPL  210 (234)
Q Consensus       151 ~~~~~------~~~~~~~~--------~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~  210 (234)
                      +.+++      ..+++...        ..+...+...++. .     ...++.+.+++...+++++..+.+  +++|||+
T Consensus        79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPt  156 (263)
T 2pjz_A           79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI--VGLDEPF  156 (263)
T ss_dssp             CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE--EEEECTT
T ss_pred             EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCc
Confidence            33332      12222211        0122233333332 1     123455667778899999999999  8999999


Q ss_pred             hhhhhcchhhHHHHHHc
Q 026725          211 QVCEARDPKGLYKLARE  227 (234)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (234)
                      +.|+....+.+++.+++
T Consensus       157 s~LD~~~~~~l~~~L~~  173 (263)
T 2pjz_A          157 ENVDAARRHVISRYIKE  173 (263)
T ss_dssp             TTCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99988888888888764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.82  E-value=9e-20  Score=148.59  Aligned_cols=151  Identities=83%  Similarity=1.329  Sum_probs=123.9

Q ss_pred             eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE--EEcCccccccccccCCCChhhHH
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY--ILDGDNCRHGLNRDLSFKAEDRV  157 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i--~~~g~~v~~~~~~~~~~~~~~~~  157 (234)
                      +|++|+++...+.+++++..++|++++|+|||||||||++++|++.+.  ..|.+  +++|+++.......+++.++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~   80 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVRHGLNRDLSFKAEDRA   80 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHTTTTTTTCCSSHHHHH
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhhhHhhcccCcChHHHH
Confidence            578899999999999999999999999999999999999999999886  34666  99999987655555678888877


Q ss_pred             HHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026725          158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG  232 (234)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~  232 (234)
                      .++..+..+...++..+...+..+..+.+..++.+++++....+..++++.|.+.+.+|.++++|+..+.|++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~  155 (200)
T 3uie_A           81 ENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG  155 (200)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCC
Confidence            777777777778888887777777777778888999988877787899999999999999999999999988655

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.82  E-value=3e-20  Score=158.07  Aligned_cols=149  Identities=17%  Similarity=0.110  Sum_probs=103.8

Q ss_pred             ccceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----cc
Q 026725           75 TVAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NR  147 (234)
Q Consensus        75 ~~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~  147 (234)
                      ..++++|+++.|++   ..+++++||++++|++++|+||||||||||+|+|+|+++ | +|+|.++|.++....    ..
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~   93 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRS   93 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhc
Confidence            36899999999975   469999999999999999999999999999999999987 6 799999998874211    00


Q ss_pred             cCCCChh-------hHHHHHHH------HHHHHHHHHhcCc----------------eEEEecCcccHHHHHHHHHhCCC
Q 026725          148 DLSFKAE-------DRVENIRR------IGEVAKLFADAGV----------------ICIACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       148 ~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      .+++.++       ...+++..      ...+...+...++                .....++.+.+++...+++++..
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  173 (260)
T 2ghi_A           94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD  173 (260)
T ss_dssp             TEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred             cEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence            1111111       11111110      0001111111110                01124556677888899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||+..|+......+++.+++
T Consensus       174 p~l--llLDEPts~LD~~~~~~i~~~l~~  200 (260)
T 2ghi_A          174 PKI--VIFDEATSSLDSKTEYLFQKAVED  200 (260)
T ss_dssp             CSE--EEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCE--EEEECccccCCHHHHHHHHHHHHH
Confidence            999  899999999988888877777654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.82  E-value=3e-20  Score=155.22  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCCh
Q 026725           76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~  153 (234)
                      +++++|+++.|+  +.++++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|. +.. ......+-+
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~-i~~-v~q~~~~~~   82 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGR-ISF-CSQFSWIMP   82 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEECSC-EEE-ECSSCCCCS
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCccEEEECCE-EEE-EecCCcccC
Confidence            688999999994  5789999999999999999999999999999999999998 99999999984 210 000000000


Q ss_pred             hhHHHHHHH--------HHHH------HHHHHhcCce-------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          154 EDRVENIRR--------IGEV------AKLFADAGVI-------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       154 ~~~~~~~~~--------~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                      ....+++..        ....      ...+......       ....++.+.+++...+++++..+.+  +++|||++.
T Consensus        83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l--llLDEPts~  160 (229)
T 2pze_A           83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGY  160 (229)
T ss_dssp             BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESTTTT
T ss_pred             CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECcccC
Confidence            011111100        0000      0111111000       0123455667788899999999999  899999999


Q ss_pred             hhhcchhhHHHHH
Q 026725          213 CEARDPKGLYKLA  225 (234)
Q Consensus       213 l~~R~~~~l~~~~  225 (234)
                      ++....+.+++.+
T Consensus       161 LD~~~~~~i~~~l  173 (229)
T 2pze_A          161 LDVLTEKEIFESC  173 (229)
T ss_dssp             SCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHH
Confidence            9888888888753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.81  E-value=4.9e-21  Score=161.99  Aligned_cols=144  Identities=12%  Similarity=0.083  Sum_probs=100.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----------
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----------  145 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----------  145 (234)
                      +++++|+++.    .+++++||++++|++++|+||||||||||+|+|+|+++ |+ |+|.++|+++....          
T Consensus         4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~   77 (249)
T 2qi9_C            4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAY   77 (249)
T ss_dssp             EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEE
Confidence            5788999887    68999999999999999999999999999999999998 88 99999998864210          


Q ss_pred             -cccCC-CChhhHHHHHHH-------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCC-------ceEE
Q 026725          146 -NRDLS-FKAEDRVENIRR-------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGD-------FIEV  204 (234)
Q Consensus       146 -~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~  204 (234)
                       ..... +......+++..       ...+...+...++.     ....++.+.+++...++.++..+.       +  +
T Consensus        78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l--l  155 (249)
T 2qi9_C           78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--L  155 (249)
T ss_dssp             ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--E
T ss_pred             ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE--E
Confidence             00000 000011111110       01122223333321     122345566777788999998888       8  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHHc
Q 026725          205 FMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ++|||+..|+....+.+++.+++
T Consensus       156 lLDEPts~LD~~~~~~l~~~l~~  178 (249)
T 2qi9_C          156 LLDEPMNSLDVAQQSALDKILSA  178 (249)
T ss_dssp             EESSTTTTCCHHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHH
Confidence            99999999988888887776653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.81  E-value=2.8e-20  Score=156.17  Aligned_cols=146  Identities=15%  Similarity=0.196  Sum_probs=101.4

Q ss_pred             cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc---CC
Q 026725           76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD---LS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~---~~  150 (234)
                      +++++|+++.|+  +..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|. +.. ....   ..
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~-i~~-v~Q~~~~~~   79 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKGS-VAY-VPQQAWIQN   79 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECSC-EEE-ECSSCCCCS
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCE-EEE-EcCCCcCCC
Confidence            478999999997  5789999999999999999999999999999999999998 89999999983 210 0000   00


Q ss_pred             CChhhHH--------HHHHHHHHHHHHHHhcCc----------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhh
Q 026725          151 FKAEDRV--------ENIRRIGEVAKLFADAGV----------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV  212 (234)
Q Consensus       151 ~~~~~~~--------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~  212 (234)
                      .+..+..        +....+.....+......          .....++.+.+++...+++++..+.+  +++|||+..
T Consensus        80 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~  157 (237)
T 2cbz_A           80 DSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSA  157 (237)
T ss_dssp             EEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EEEESTTTT
T ss_pred             cCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCcccc
Confidence            0000000        000010011001111111          01134556677888899999999999  899999999


Q ss_pred             hhhcchhhHHHHHH
Q 026725          213 CEARDPKGLYKLAR  226 (234)
Q Consensus       213 l~~R~~~~l~~~~~  226 (234)
                      |+....+.+++.++
T Consensus       158 LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          158 VDAHVGKHIFENVI  171 (237)
T ss_dssp             SCHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHH
Confidence            98888888888774

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.80  E-value=1e-19  Score=154.16  Aligned_cols=148  Identities=14%  Similarity=0.070  Sum_probs=101.8

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccccccCCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~~~~~~~  151 (234)
                      +++++|+++.|+ +..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.+.. .+.   ........+
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~~-~i~~v~q~~~~~~~~   81 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIEVYQ-SIGFVPQFFSSPFAY   81 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-CSEEEEEECS-CEEEECSCCCCSSCC
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEec-cEEEEcCCCccCCCC
Confidence            588999999998 8889999999999999999999999999999999999998 9999997431 111   000000001


Q ss_pred             ChhhHHHH-------------HHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhh
Q 026725          152 KAEDRVEN-------------IRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC  213 (234)
Q Consensus       152 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l  213 (234)
                      +..+....             ......+...+...++.     ....++.+.+++...+++++..+.+  +++|||++.|
T Consensus        82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEPts~L  159 (253)
T 2nq2_C           82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL--ILLDEPTSAL  159 (253)
T ss_dssp             BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE--EEESSSSTTS
T ss_pred             CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccC
Confidence            11110000             00000122223333321     1233456677888899999999999  8999999999


Q ss_pred             hhcchhhHHHHHHc
Q 026725          214 EARDPKGLYKLARE  227 (234)
Q Consensus       214 ~~R~~~~l~~~~~~  227 (234)
                      +......+++.+++
T Consensus       160 D~~~~~~l~~~l~~  173 (253)
T 2nq2_C          160 DLANQDIVLSLLID  173 (253)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888887776653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.79  E-value=4.4e-20  Score=173.46  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=105.0

Q ss_pred             cceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|++++|+  +.++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....    ..+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC-CSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEECCEEcccCCHHHHHhhe
Confidence            588999999994  4679999999999999999999999999999999999998 999999999998864210    001


Q ss_pred             CCChh-------hHHHHH------------HHHHHH---HHHHHhc--CceEE-----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE-------DRVENI------------RRIGEV---AKLFADA--GVICI-----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~-------~~~~~~------------~~~~~~---~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.++       ..++++            ......   .......  +....     ..++.+.+++...+++++..+.
T Consensus       420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~  499 (587)
T 3qf4_A          420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK  499 (587)
T ss_dssp             EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred             EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence            11100       011111            000000   0111111  11111     2345567788889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++....+.+++.+++
T Consensus       500 i--lllDEpts~LD~~~~~~i~~~l~~  524 (587)
T 3qf4_A          500 V--LILDDCTSSVDPITEKRILDGLKR  524 (587)
T ss_dssp             E--EEEESCCTTSCHHHHHHHHHHHHH
T ss_pred             E--EEEECCcccCCHHHHHHHHHHHHH
Confidence            9  899999999988888888877654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.79  E-value=4.6e-20  Score=173.69  Aligned_cols=149  Identities=14%  Similarity=0.141  Sum_probs=103.1

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      .++++|+++.|+ +.++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....    ..++
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~r~~i~  432 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIG  432 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCeEEEECCEEhhhCCHHHHHhceE
Confidence            588999999996 4679999999999999999999999999999999999998 999999999998864110    0011


Q ss_pred             CChh-------hHHHHHHHH------HHHHHHHHhcC-----------ceE-E----EecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAE-------DRVENIRRI------GEVAKLFADAG-----------VIC-I----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~-------~~~~~~~~~------~~~~~~~~~~~-----------~~~-~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.++       ..++++..-      ..+.......+           ... +    ..++.+.+++...+++++..+.+
T Consensus       433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i  512 (598)
T 3qf4_B          433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI  512 (598)
T ss_dssp             EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred             EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            1111       111111100      00000000000           000 0    12345667778899999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.++....+.+++.+++
T Consensus       513 --lllDEpts~LD~~~~~~i~~~l~~  536 (598)
T 3qf4_B          513 --LILDEATSNVDTKTEKSIQAAMWK  536 (598)
T ss_dssp             --EEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             --EEEECCccCCCHHHHHHHHHHHHH
Confidence              899999999988887777766653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.79  E-value=3.7e-20  Score=173.85  Aligned_cols=150  Identities=16%  Similarity=0.219  Sum_probs=106.1

Q ss_pred             ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      ..++++|++++|++  .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....    ...
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRH  418 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcC
Confidence            36899999999974  679999999999999999999999999999999999998 99999999998875311    011


Q ss_pred             CCCChhh-------HHHHHHHH-------HHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCC
Q 026725          149 LSFKAED-------RVENIRRI-------GEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       149 ~~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      +++.+++       ..+++...       ..+.......++.                ....++.+.+++...+++++..
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~  498 (582)
T 3b5x_A          419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD  498 (582)
T ss_pred             eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence            1111111       11111100       0011111111110                0123455677788899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||++.++....+.+++.+++
T Consensus       499 p~i--lllDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b5x_A          499 APV--LILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             CCE--EEEECccccCCHHHHHHHHHHHHH
Confidence            999  899999999998888888877764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.78  E-value=5.1e-20  Score=172.75  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=102.6

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      .++++|++++|++  .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....    ..+
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHhhhe
Confidence            5889999999964  579999999999999999999999999999999999998 999999999998753210    001


Q ss_pred             CCChh-------hHHHHHHH---------HHHHH------HHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE-------DRVENIRR---------IGEVA------KLFADA--GVI-CI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~-------~~~~~~~~---------~~~~~------~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.++       ..++++..         +....      ......  +.. .+    ..++.+.+++...+++++..+.
T Consensus       418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            11110       11111100         00000      001100  110 00    1245566778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +  +++|||++.++....+.+.+.++
T Consensus       498 i--lllDEpts~LD~~~~~~i~~~l~  521 (578)
T 4a82_A          498 I--LILDEATSALDLESESIIQEALD  521 (578)
T ss_dssp             E--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             E--EEEECccccCCHHHHHHHHHHHH
Confidence            9  89999999998877777766654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.77  E-value=5.8e-19  Score=165.68  Aligned_cols=150  Identities=17%  Similarity=0.189  Sum_probs=105.4

Q ss_pred             ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----cc
Q 026725           75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RD  148 (234)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~  148 (234)
                      ..++++|+++.|++  .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....    ..
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQ  418 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHT
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC-CCCCeEEECCEEccccCHHHHHhh
Confidence            36899999999973  689999999999999999999999999999999999998 999999999988753110    00


Q ss_pred             CCCChh-------hHHHHHHHH-------HHHHHHHHhcCce----------------EEEecCcccHHHHHHHHHhCCC
Q 026725          149 LSFKAE-------DRVENIRRI-------GEVAKLFADAGVI----------------CIACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       149 ~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      +++.++       ...+++...       ..+.......++.                ....++.+.+++...+++++..
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~  498 (582)
T 3b60_A          419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  498 (582)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence            111111       111111100       0011111111110                0123456677888899999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||++.++....+.+++.+++
T Consensus       499 p~i--lllDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b60_A          499 SPI--LILDEATSALDTESERAIQAALDE  525 (582)
T ss_dssp             CSE--EEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             CCE--EEEECccccCCHHHHHHHHHHHHH
Confidence            998  899999999988888877776653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.73  E-value=2.7e-18  Score=148.21  Aligned_cols=144  Identities=15%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE  154 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~  154 (234)
                      +.++++|+++.+  ..+++++||++++|++++|+||||||||||+|+|+|+++ |++|+|.++|+ +.. ......+-+.
T Consensus        39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~-i~~-v~Q~~~l~~~  113 (290)
T 2bbs_A           39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGR-ISF-CSQNSWIMPG  113 (290)
T ss_dssp             -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCSC-EEE-ECSSCCCCSS
T ss_pred             ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCE-EEE-EeCCCccCcc
Confidence            468889999863  679999999999999999999999999999999999998 89999999883 210 0000000000


Q ss_pred             hHHHHHH-------HHHHH------HHHHHhcCc-------eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026725          155 DRVENIR-------RIGEV------AKLFADAGV-------ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (234)
Q Consensus       155 ~~~~~~~-------~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~  214 (234)
                      ...+++.       .....      ...+.....       .....++.+.+++...+++++..+.+  +++|||+..|+
T Consensus       114 tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l--llLDEPts~LD  191 (290)
T 2bbs_A          114 TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLD  191 (290)
T ss_dssp             BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCC
T ss_pred             cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE--EEEECCcccCC
Confidence            1111110       00000      011111110       01134566777888899999999999  89999999998


Q ss_pred             hcchhhHHHHH
Q 026725          215 ARDPKGLYKLA  225 (234)
Q Consensus       215 ~R~~~~l~~~~  225 (234)
                      ......+++.+
T Consensus       192 ~~~~~~i~~~l  202 (290)
T 2bbs_A          192 VLTEKEIFESC  202 (290)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            88888888753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.72  E-value=1.8e-18  Score=175.22  Aligned_cols=148  Identities=14%  Similarity=0.186  Sum_probs=106.2

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------  146 (234)
                      -++++|++++|++   .++|+|+||+|++||.++|+|+||||||||+++|.|++. |.+|+|.+||.|+.....      
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC-CSSSEEEETTEETTTBCHHHHHTT
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc-CCCCEEEECCEEhhhCCHHHHHhh
Confidence            5889999999954   469999999999999999999999999999999999998 999999999999864210      


Q ss_pred             -----cc-------------CCCChh-----hHHHHHHHHHHHHHHHHh-c-Cc-eEE----EecCcccHHHHHHHHHhC
Q 026725          147 -----RD-------------LSFKAE-----DRVENIRRIGEVAKLFAD-A-GV-ICI----ACLISPYRKDRDACRSML  196 (234)
Q Consensus       147 -----~~-------------~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~-~~~----~~~~~~~~~~~~~~~~ll  196 (234)
                           ++             ++..+.     +..+..+.. .+...... + ++ ..+    ..++.+.+++-..||+++
T Consensus      1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a-~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A         1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLA-NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHT-TCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHh-CChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence                 00             122111     111111110 01111111 1 11 112    234566788889999999


Q ss_pred             CCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       197 ~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ....+  +++|||++.++....+.+.+.+++
T Consensus      1234 r~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1234 RNPKI--LLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             SCCSE--EEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             hCCCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence            99998  899999999988888888777764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.70  E-value=1e-17  Score=169.78  Aligned_cols=147  Identities=18%  Similarity=0.166  Sum_probs=103.7

Q ss_pred             cceeeceeeecC---CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------
Q 026725           76 VAKSTNILWHKN---SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------  146 (234)
Q Consensus        76 ~~~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------  146 (234)
                      -++++|+++.|+   +.++|+|+||++++|+.++|+||||||||||+++|.|++. |.+|+|.+||.+++....      
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~  493 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKN  493 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHH
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhc
Confidence            588999999996   4579999999999999999999999999999999999998 999999999998764210      


Q ss_pred             -----cc-------------CCCChhhHHHHHHHHHHHH---HHHHhc--C-ceEE----EecCcccHHHHHHHHHhCCC
Q 026725          147 -----RD-------------LSFKAEDRVENIRRIGEVA---KLFADA--G-VICI----ACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       147 -----~~-------------~~~~~~~~~~~~~~~~~~~---~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~ll~~  198 (234)
                           ++             ++.......+ +......+   ......  + ...+    ..++.+.+++-.+||+++..
T Consensus       494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~-v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~  572 (1321)
T 4f4c_A          494 VAVVSQEPALFNCTIEENISLGKEGITREE-MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN  572 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHH-HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred             ccccCCcceeeCCchhHHHhhhcccchHHH-HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence                 00             1111001111 11111111   111111  1 1222    23456678888999999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +.+  +++|+|++.++....+.+.+.+.
T Consensus       573 ~~I--liLDE~tSaLD~~te~~i~~~l~  598 (1321)
T 4f4c_A          573 PKI--LLLDEATSALDAESEGIVQQALD  598 (1321)
T ss_dssp             CSE--EEEESTTTTSCTTTHHHHHHHHH
T ss_pred             CCE--EEEecccccCCHHHHHHHHHHHH
Confidence            999  89999999998887665555543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.70  E-value=4.7e-18  Score=171.84  Aligned_cols=147  Identities=17%  Similarity=0.119  Sum_probs=101.4

Q ss_pred             cceeeceeeecCC---ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----c
Q 026725           76 VAKSTNILWHKNS---VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----D  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----~  148 (234)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......    .
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhh
Confidence            5889999999964   469999999999999999999999999999999999998 9999999999987532100    0


Q ss_pred             CCCChh-------hHHHHHHH------------HHHH---HHHHHhc--Cce-E----EEecCcccHHHHHHHHHhCCCC
Q 026725          149 LSFKAE-------DRVENIRR------------IGEV---AKLFADA--GVI-C----IACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       149 ~~~~~~-------~~~~~~~~------------~~~~---~~~~~~~--~~~-~----~~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      +++.++       ..++++..            ....   .......  +.. .    ...++.+.+++..++++++..+
T Consensus       466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p  545 (1284)
T 3g5u_A          466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP  545 (1284)
T ss_dssp             EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence            111111       11111111            0000   0001111  000 0    1234566778889999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLA  225 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~  225 (234)
                      .+  +++|||++.++....+.+.+.+
T Consensus       546 ~i--liLDEpts~LD~~~~~~i~~~l  569 (1284)
T 3g5u_A          546 KI--LLLDEATSALDTESEAVVQAAL  569 (1284)
T ss_dssp             SE--EEEESTTCSSCHHHHHHHHHHH
T ss_pred             CE--EEEECCCCCCCHHHHHHHHHHH
Confidence            98  8999999999877666555544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.68  E-value=8.4e-18  Score=170.00  Aligned_cols=149  Identities=15%  Similarity=0.192  Sum_probs=104.7

Q ss_pred             cceeeceeeecCCc---cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc----ccc
Q 026725           76 VAKSTNILWHKNSV---DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRD  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~----~~~  148 (234)
                      .++++|+++.|++.   ++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....    ...
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTS
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhc
Confidence            58899999999753   69999999999999999999999999999999999998 99999999999876321    011


Q ss_pred             CCCChhh-------HHHH--------------HHHHHHH---HHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCC
Q 026725          149 LSFKAED-------RVEN--------------IRRIGEV---AKLFADA--GV-ICI----ACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       149 ~~~~~~~-------~~~~--------------~~~~~~~---~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~  197 (234)
                      +++.+++       .+++              +......   .......  +. ..+    ..++.+.+++...+++++.
T Consensus      1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A         1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp             CEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             eEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence            1111111       0111              1000000   0111111  00 011    2345667788889999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||+..++....+.+++.+++
T Consensus      1189 ~p~i--LiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1189 QPHI--LLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp             CCSS--EEEESCSSSCCHHHHHHHHHHHHH
T ss_pred             CCCE--EEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999  899999999988888888777754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.67  E-value=1.1e-16  Score=148.89  Aligned_cols=146  Identities=14%  Similarity=0.082  Sum_probs=102.5

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc---cCC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DLS  150 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~---~~~  150 (234)
                      .++++++++++.|++. .++.+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+......   ...
T Consensus       267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~i~~~~q~~~~~~~  344 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEKQILSYKPQRIFPNYD  344 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSCCCEEEECSSCCCCCS
T ss_pred             cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCeeeEeechhcccccC
Confidence            3578899999999875 4777899999999999999999999999999999998 9999999888765321100   001


Q ss_pred             CChhhHHHHHHHH---------HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026725          151 FKAEDRVENIRRI---------GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR  216 (234)
Q Consensus       151 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R  216 (234)
                      .+..   +++...         ..+..++...++.     ....++.+.+++..++++++..+.+  +++|||+..|+..
T Consensus       345 ~tv~---~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l--LlLDEPT~gLD~~  419 (538)
T 3ozx_A          345 GTVQ---QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL--YVLDQPSSYLDVE  419 (538)
T ss_dssp             SBHH---HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHH
T ss_pred             CCHH---HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHH
Confidence            1111   111110         0011111112221     1233455667788899999999999  8999999999888


Q ss_pred             chhhHHHHHH
Q 026725          217 DPKGLYKLAR  226 (234)
Q Consensus       217 ~~~~l~~~~~  226 (234)
                      ....+++.++
T Consensus       420 ~~~~i~~~l~  429 (538)
T 3ozx_A          420 ERYIVAKAIK  429 (538)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877777765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.64  E-value=5.1e-17  Score=151.19  Aligned_cols=143  Identities=17%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE---------EEcCcccccc-----
Q 026725           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG-----  144 (234)
Q Consensus        80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i---------~~~g~~v~~~-----  144 (234)
                      +|++++|++. .+++++| ++++||+++|+||||||||||+|+|+|++. |++|++         .++|.++...     
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~  102 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLK  102 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred             cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence            6899999876 4899999 999999999999999999999999999998 888985         3456543210     


Q ss_pred             -ccccCCC-------Chh----hHHHHHHHH---HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          145 -LNRDLSF-------KAE----DRVENIRRI---GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       145 -~~~~~~~-------~~~----~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                       ....+++       .+.    ...+.+...   ..+..++...++.     ....++.+.++...++++++..+.+  +
T Consensus       103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l--L  180 (538)
T 1yqt_A          103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF--Y  180 (538)
T ss_dssp             TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred             HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence             0000000       000    111111100   0122233333321     1233456677888999999999999  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++|||++.|+......+++.++
T Consensus       181 lLDEPTs~LD~~~~~~l~~~L~  202 (538)
T 1yqt_A          181 FFDEPSSYLDIRQRLNAARAIR  202 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHH
Confidence            9999999998887777777664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.63  E-value=4.8e-16  Score=146.42  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=101.7

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccccccCC
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLS  150 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~~~~~~  150 (234)
                      .++++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+. ..+.   ........
T Consensus       355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~-~~i~~v~Q~~~~~~~  431 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWD-LTVAYKPQYIKAEYE  431 (607)
T ss_dssp             CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCCC-CCEEEECSSCCCCCS
T ss_pred             ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEe-eEEEEEecCccCCCC
Confidence            3578999999999875 5889999999999999999999999999999999998 899998763 1111   00000012


Q ss_pred             CChhhHHHHH-H-HH---HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhh
Q 026725          151 FKAEDRVENI-R-RI---GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       151 ~~~~~~~~~~-~-~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~  220 (234)
                      ++..+..... . ..   ..+..++...++     .....++.+.+++..+++.++..+.+  +++|||+..|+......
T Consensus       432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l--LlLDEPt~~LD~~~~~~  509 (607)
T 3bk7_A          432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLA  509 (607)
T ss_dssp             SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHH
T ss_pred             CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCccCCCHHHHHH
Confidence            2222221111 0 00   011122222222     11233455667778899999999998  89999999998888888


Q ss_pred             HHHHHHc
Q 026725          221 LYKLARE  227 (234)
Q Consensus       221 l~~~~~~  227 (234)
                      +++.+++
T Consensus       510 l~~~l~~  516 (607)
T 3bk7_A          510 VSRAIRH  516 (607)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.63  E-value=5.1e-16  Score=144.41  Aligned_cols=147  Identities=17%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc---ccccccCCC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSF  151 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~---~~~~~~~~~  151 (234)
                      ++++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|+++ |++|+|.+. ..+.   .........
T Consensus       286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~-~~i~~v~Q~~~~~~~~  362 (538)
T 1yqt_A          286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWD-LTVAYKPQYIKADYEG  362 (538)
T ss_dssp             EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCCC-CCEEEECSSCCCCCSS
T ss_pred             eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEC-ceEEEEecCCcCCCCC
Confidence            578999999999875 5889999999999999999999999999999999998 899998762 1111   000000112


Q ss_pred             ChhhHHHHH-H-HH---HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhH
Q 026725          152 KAEDRVENI-R-RI---GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (234)
Q Consensus       152 ~~~~~~~~~-~-~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l  221 (234)
                      +..+..... . ..   ..+...+..+++.     ....++.+.++....++.++..+.+  +++|||+..|+......+
T Consensus       363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l--LlLDEPt~~LD~~~~~~i  440 (538)
T 1yqt_A          363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAV  440 (538)
T ss_dssp             BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHH
T ss_pred             cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHHHHH
Confidence            222221111 0 00   0111122222221     1123455667777889999999998  899999999988888888


Q ss_pred             HHHHH
Q 026725          222 YKLAR  226 (234)
Q Consensus       222 ~~~~~  226 (234)
                      ++.++
T Consensus       441 ~~~l~  445 (538)
T 1yqt_A          441 SRAIR  445 (538)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.63  E-value=2.6e-16  Score=154.11  Aligned_cols=63  Identities=21%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             ccceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725           75 TVAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      ++++++|+++.|++  +++++|+||++++|++++|+||||||||||+|+|+|++. |++|+|++++
T Consensus       670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-P~sG~I~~~~  734 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-CSEEEEEECT
T ss_pred             ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEcC
Confidence            47999999999965  679999999999999999999999999999999999998 9999999975

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.63  E-value=5.5e-17  Score=152.78  Aligned_cols=143  Identities=15%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             eceeeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE---------EEcCcccccc-----
Q 026725           80 TNILWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG-----  144 (234)
Q Consensus        80 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i---------~~~g~~v~~~-----  144 (234)
                      +|++++|++. .+++++| ++++||+++|+||||||||||+|+|+|++. |++|++         .++|.++...     
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~  172 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLK  172 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhh
Confidence            8999999876 4899999 999999999999999999999999999998 899985         3456543210     


Q ss_pred             -ccccCC----CC---h----hhHHHHHHHH---HHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEE
Q 026725          145 -LNRDLS----FK---A----EDRVENIRRI---GEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEV  204 (234)
Q Consensus       145 -~~~~~~----~~---~----~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~  204 (234)
                       ....++    ..   +    ....+.+...   ..+..++...++.     ....++.+.+++..++++++..+.+  +
T Consensus       173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l--L  250 (607)
T 3bk7_A          173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF--Y  250 (607)
T ss_dssp             HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred             hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence             000000    00   0    0111111000   0112223333321     1223456677888999999999999  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++|||++.|+......+++.++
T Consensus       251 lLDEPTs~LD~~~~~~l~~~L~  272 (607)
T 3bk7_A          251 FFDEPSSYLDIRQRLKVARVIR  272 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHH
Confidence            9999999998887777777665

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.59  E-value=3.3e-15  Score=139.12  Aligned_cols=136  Identities=40%  Similarity=0.621  Sum_probs=77.1

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EE-EEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcC
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (234)
                      ..+++|++++|+|+||||||||+++|++.+. +.+| .+ +++|+++.......++++..++..+++.+..+...+....
T Consensus       364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~  442 (552)
T 3cr8_A          364 PRERQGFTVFFTGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNR  442 (552)
T ss_dssp             CGGGSCEEEEEEESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccceEEEEECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            3688999999999999999999999999998 7775 67 5999887543334455666666555554434333333333


Q ss_pred             ceEEEecCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          175 VICIACLISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      ...+.....+....++.++++++.++ +..++++.|.+.|.+|+++++|+..+.++++++
T Consensus       443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l  502 (552)
T 3cr8_A          443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEF  502 (552)
T ss_dssp             CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-------------------------
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHH
Confidence            44444333344566777888888776 456899999999999999999998777776654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.54  E-value=3.8e-16  Score=123.22  Aligned_cols=64  Identities=14%  Similarity=0.076  Sum_probs=57.4

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ++..++++.|++..+++++||++++|++++|+||||||||||+|+|+|++  |.+|+|.++|.++.
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~   71 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV   71 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence            34456788888888999999999999999999999999999999999988  67899999998874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.53  E-value=6.5e-15  Score=140.21  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHH---------------------HHHHhhcccCC-------ccEEEEcCc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQALHWRG-------KLTYILDGD  139 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLl---------------------r~l~gll~~p~-------~G~i~~~g~  139 (234)
                      ...+|+|+||+|++||+++|+||||||||||+                     +++.++.. |+       .+.|.+++.
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~  108 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQK  108 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCc
Confidence            45789999999999999999999999999998                     88888776 77       455666665


Q ss_pred             cccccccccCCCChh---------------------------hHHHHHHHH--------------------HHHHHHHHh
Q 026725          140 NCRHGLNRDLSFKAE---------------------------DRVENIRRI--------------------GEVAKLFAD  172 (234)
Q Consensus       140 ~v~~~~~~~~~~~~~---------------------------~~~~~~~~~--------------------~~~~~~~~~  172 (234)
                      +........+++..+                           ...+++...                    ......+..
T Consensus       109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (670)
T 3ux8_A          109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN  188 (670)
T ss_dssp             C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred             hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            443211000000000                           000000000                    000001111


Q ss_pred             cCc------eEEEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          173 AGV------ICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       173 ~~~------~~~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .++      .....++.+.+++..++++++..+.  +  +++|||+..|+......+++.+++
T Consensus       189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l--LlLDEPtsgLD~~~~~~l~~~l~~  249 (670)
T 3ux8_A          189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL--YVLDEPSIGLHQRDNDRLIATLKS  249 (670)
T ss_dssp             TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE--EEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE--EEEECCccCCCHHHHHHHHHHHHH
Confidence            111      1122345566778889999998887  7  899999999999888888876653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.4e-15  Score=141.63  Aligned_cols=144  Identities=16%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             eceeeecCCcc-ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-----------EEcCccccccc--
Q 026725           80 TNILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHGL--  145 (234)
Q Consensus        80 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-----------~~~g~~v~~~~--  145 (234)
                      +|++++|+... .+++++ .+++||+++|+||||||||||+|+|+|++. |++|+|           ++.|.++....  
T Consensus        81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~  158 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTK  158 (608)
T ss_dssp             TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred             CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhH
Confidence            46788897554 456665 689999999999999999999999999998 999987           33343321100  


Q ss_pred             --cccC------CCChh----------hHHHHHHH-----HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCC
Q 026725          146 --NRDL------SFKAE----------DRVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLP  197 (234)
Q Consensus       146 --~~~~------~~~~~----------~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~  197 (234)
                        ...+      .+...          ...+.+..     ...+..++...++.     ....++.+.++..+++++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~  238 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ  238 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence              0000      00000          00000000     00122222222221     123345567788899999999


Q ss_pred             CCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       198 ~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      .+.+  +++|||++.|+......+++.+++
T Consensus       239 ~p~l--lllDEPts~LD~~~~~~l~~~l~~  266 (608)
T 3j16_B          239 EADV--YMFDEPSSYLDVKQRLNAAQIIRS  266 (608)
T ss_dssp             CCSE--EEEECTTTTCCHHHHHHHHHHHHG
T ss_pred             CCCE--EEEECcccCCCHHHHHHHHHHHHH
Confidence            9998  899999999988888788877764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.51  E-value=3.5e-15  Score=118.69  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHH------------HHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHH
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLAC------------ALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR  161 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr------------~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~  161 (234)
                      |+||++++||+++|+||||||||||+|            .+.|++. +..|.+.+.+.                ..+...
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~-~~~~~~~~~~~----------------~~~~~~   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS-DDENDQTVTGA----------------AFDVLH   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC-SSTTCGGGHHH----------------HHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc-CcccchhhHHH----------------HHHHHH
Confidence            689999999999999999999999999            5555554 33332111110                001111


Q ss_pred             HHHHHHHHHHhcCceEEEec----CcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          162 RIGEVAKLFADAGVICIACL----ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                         .........+.......    ....++....+++++..+.+  +++|+|++.|+.+.
T Consensus        64 ---~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~--lllDEPt~~Ld~~~  118 (171)
T 4gp7_A           64 ---YIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVA--VVFNLPEKVCQERN  118 (171)
T ss_dssp             ---HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEE--EEECCCHHHHHHHH
T ss_pred             ---HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEE--EEEeCCHHHHHHHH
Confidence               11111112222222221    22335556778888877777  89999999998883

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.49  E-value=8.2e-14  Score=136.53  Aligned_cols=147  Identities=15%  Similarity=0.141  Sum_probs=95.0

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh-cc-cC--CccEEEEcCccccccccccCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-LH-WR--GKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl-l~-~p--~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      .+...|+++.|+++.+++++||++++|++++|+||||||||||+|+|+|- +. .+  ....+.+-.++.....   ..+
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~---~~l  511 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTH---SDT  511 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCC---TTS
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccc---cCC
Confidence            45556999999999999999999999999999999999999999999952 11 01  1111222222210000   001


Q ss_pred             ChhhHHHH--HHHHHHHHHHHHhcCce------EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHH
Q 026725          152 KAEDRVEN--IRRIGEVAKLFADAGVI------CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (234)
Q Consensus       152 ~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~  223 (234)
                      +..+....  ......+...+..+++.      ....++.+.+++..+++.++..+.+  +++|||++.|+....+.+++
T Consensus       512 tv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l--LLLDEPTs~LD~~~~~~l~~  589 (986)
T 2iw3_A          512 SVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI--LLLDEPTNHLDTVNVAWLVN  589 (986)
T ss_dssp             BHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE--EEEESTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHHHHHHHH
Confidence            11111000  00001222233333331      2234566778888999999999999  89999999999888888998


Q ss_pred             HHHc
Q 026725          224 LARE  227 (234)
Q Consensus       224 ~~~~  227 (234)
                      .+++
T Consensus       590 ~L~~  593 (986)
T 2iw3_A          590 YLNT  593 (986)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8876

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.1e-13  Score=130.22  Aligned_cols=140  Identities=14%  Similarity=0.086  Sum_probs=90.1

Q ss_pred             eceeeecCC-ccccccceeeecCC-----EEEEEEcCCCCcHHHHHHHHHhhcccCCccEE------EEcCccccccccc
Q 026725           80 TNILWHKNS-VDKRDRQQLLQQKG-----CVIWITGLSGSGKSTLACALSQALHWRGKLTY------ILDGDNCRHGLNR  147 (234)
Q Consensus        80 ~~l~~~~~~-~~~l~~vs~~i~~G-----e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i------~~~g~~v~~~~~~  147 (234)
                      .++++.|++ ..+++++||++.+|     |+++|+||||||||||+|+|+|+++ |++|+.      .+-.++....   
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~~~~~~i~~~~q~~~~~---  425 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQDIPKLNVSMKPQKIAPK---  425 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCCCCSCCEEEECSSCCCC---
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcCccCCcEEEeccccccc---
Confidence            566777865 45799999999999     7899999999999999999999998 888862      2211221100   


Q ss_pred             cCCCChhhHHHH-HH----HHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          148 DLSFKAEDRVEN-IR----RIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       148 ~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                       ...+..+.... ..    .......++...++     .....++.+.+++..++++++..+.+  +++|||+..|+...
T Consensus       426 -~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l--LlLDEPT~gLD~~~  502 (608)
T 3j16_B          426 -FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI--YLIDEPSAYLDSEQ  502 (608)
T ss_dssp             -CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTCCHHH
T ss_pred             -CCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHH
Confidence             00111111000 00    00001111122221     12234556677788899999999999  89999999998877


Q ss_pred             hhhHHHHHH
Q 026725          218 PKGLYKLAR  226 (234)
Q Consensus       218 ~~~l~~~~~  226 (234)
                      ...+++.++
T Consensus       503 ~~~i~~ll~  511 (608)
T 3j16_B          503 RIICSKVIR  511 (608)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776665

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.42  E-value=8.6e-14  Score=129.38  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             ceeeecCCccccccceee-ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-----------EEcCccccccc---
Q 026725           81 NILWHKNSVDKRDRQQLL-QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHGL---  145 (234)
Q Consensus        81 ~l~~~~~~~~~l~~vs~~-i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-----------~~~g~~v~~~~---  145 (234)
                      +.+.+||... ++-..+. +++||+++|+||||||||||+|+|+|++. |++|+|           .++|.++....   
T Consensus         4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~   81 (538)
T 3ozx_A            4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL   81 (538)
T ss_dssp             CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred             CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence            4566776332 2222333 56999999999999999999999999998 899988           56666542100   


Q ss_pred             ---c----ccCCCChh-------hHHHHHHHH---HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          146 ---N----RDLSFKAE-------DRVENIRRI---GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       146 ---~----~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                         .    ..+.+...       ...+.+...   ..+..++...++     ..+..++.+.++...++++++..+.+  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i--  159 (538)
T 3ozx_A           82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV--  159 (538)
T ss_dssp             HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE--
T ss_pred             hhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence               0    00011000       000111000   011122222222     12233456677888999999999999  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||++.|+......+++.+++
T Consensus       160 lllDEPts~LD~~~~~~l~~~l~~  183 (538)
T 3ozx_A          160 YIFDQPSSYLDVRERMNMAKAIRE  183 (538)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHH
Confidence            899999999988888888877664

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.41  E-value=3.9e-13  Score=127.95  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      ...+|+|+||+|++||+++|+||||||||||+++|.
T Consensus       334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            346899999999999999999999999999998764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.37  E-value=1.2e-14  Score=119.64  Aligned_cols=130  Identities=15%  Similarity=0.017  Sum_probs=72.6

Q ss_pred             eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc---cccccCCCChhhHHHHH
Q 026725           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENI  160 (234)
Q Consensus        84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~---~~~~~~~~~~~~~~~~~  160 (234)
                      +.|++..+++++    ++|++++|+||||||||||+++|+|+ . |++|+|..  .++..   .....+++.+++..+++
T Consensus         8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl   79 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKI   79 (208)
T ss_dssp             CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred             CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCHHHHH
Confidence            346667788885    89999999999999999999999998 7 89999843  22211   11123455555432222


Q ss_pred             -HHHHH-HHHHHHhcCc---eEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          161 -RRIGE-VAKLFADAGV---ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       161 -~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       ..... ..........   ........+.++....++.++..+.+  +++|||+..    ....+++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~l--llLDEPts~----~~~~l~~~l~~  145 (208)
T 3b85_A           80 DPYLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAF--VILDEAQNT----TPAQMKMFLTR  145 (208)
T ss_dssp             CTTTHHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEE--EEECSGGGC----CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCE--EEEeCCccc----cHHHHHHHHHH
Confidence             11000 0000000000   00000011333334556677777777  899999999    55556655543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.35  E-value=1e-11  Score=98.66  Aligned_cols=129  Identities=57%  Similarity=1.015  Sum_probs=85.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceE
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (234)
                      ++|++++|+|++||||||++++|++.+. + .|  .+.++++.++.......++..+++..+++++.....++.+.+...
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC   80 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEE
Confidence            4799999999999999999999999886 3 45  778888877654333345665666566655544444554555544


Q ss_pred             EEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhhHHHHHHcCcC
Q 026725          178 IACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKV  230 (234)
Q Consensus       178 ~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~  230 (234)
                      ...+..+....++.+++++...+  ...++++.|.+.+.+|..+.+|+..+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~  135 (179)
T 2pez_A           81 ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEI  135 (179)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSS
T ss_pred             EEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccc
Confidence            44444343323333333332222  245899999999999988888877766544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.33  E-value=4.5e-13  Score=118.21  Aligned_cols=64  Identities=25%  Similarity=0.091  Sum_probs=59.3

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      +.++.+++++.|+ +..+++++ |++.+|++++|+||||||||||+++|+|++. |+.|.|.+.|++
T Consensus        44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~  108 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGER  108 (347)
T ss_dssp             CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCC
T ss_pred             CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEeccc
Confidence            4688899999998 78899999 9999999999999999999999999999998 899999998865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.32  E-value=8e-14  Score=125.53  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=82.8

Q ss_pred             CccccccceeeecCCE--------------------EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--
Q 026725           88 SVDKRDRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--  145 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge--------------------~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--  145 (234)
                      ...+++++||++++|+                    +++|+||||||||||+|+|+|++. |++|+|.++|.+++...  
T Consensus        35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t~~~~v  113 (413)
T 1tq4_A           35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVTMERHP  113 (413)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC----CCCEE
T ss_pred             CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecceeEEe
Confidence            3568999999999999                    999999999999999999999988 89999999887642100  


Q ss_pred             -----c-c----c-CCCCh--hhHHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCC----------CCCce
Q 026725          146 -----N-R----D-LSFKA--EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP----------EGDFI  202 (234)
Q Consensus       146 -----~-~----~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~----------~~~l~  202 (234)
                           . .    + .++..  ....+.+.   .+.  +.+...........+.+++...++.+..          .+++ 
T Consensus       114 ~q~~~~~~ltv~D~~g~~~~~~~~~~~L~---~~~--L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl-  187 (413)
T 1tq4_A          114 YKHPNIPNVVFWDLPGIGSTNFPPDTYLE---KMK--FYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS-  187 (413)
T ss_dssp             EECSSCTTEEEEECCCGGGSSCCHHHHHH---HTT--GGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH-
T ss_pred             ccccccCCeeehHhhcccchHHHHHHHHH---HcC--CCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc-
Confidence                 0 0    0 11111  11111111   111  1222222222222236677777777766          4444 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHHc
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                       +++|||+..++...+..+++.+++
T Consensus       188 -llLDEPtsgLD~~~~~~l~~~l~~  211 (413)
T 1tq4_A          188 -DITNEADGEPQTFDKEKVLQDIRL  211 (413)
T ss_dssp             -HHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             -cccCcccccCCHHHHHHHHHHHHH
Confidence             578999999988887776665543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.31  E-value=5.4e-13  Score=121.13  Aligned_cols=63  Identities=21%  Similarity=0.144  Sum_probs=59.6

Q ss_pred             ccceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           75 TVAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        75 ~~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +.++.+++++.|+ +..+++++ |++.+|++++|+||||||||||+++|+|+.. |+.|.|.++|+
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~  193 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGE  193 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESC
T ss_pred             CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEece
Confidence            4788999999997 78899999 9999999999999999999999999999988 89999999998

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.31  E-value=7.7e-12  Score=102.17  Aligned_cols=138  Identities=59%  Similarity=0.934  Sum_probs=90.3

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCccccccccccCCCChhhHHHHHHHHHHHHH
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK  168 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (234)
                      ....-.+.+++|.+++|+|++||||||+++.|++.+. |..|  .+.++++.++........+...++..+++.+.....
T Consensus        14 ~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~   92 (211)
T 1m7g_A           14 RSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAK   92 (211)
T ss_dssp             HHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHH
Confidence            3444457788999999999999999999999999887 5677  899998887654333334554555555544333222


Q ss_pred             HHHhcCceEEEecCcccHHHHHHHHHhCCC--------CCceEEEEeCChhhhhhcchhhHHHHHHcCc
Q 026725          169 LFADAGVICIACLISPYRKDRDACRSMLPE--------GDFIEVFMDVPLQVCEARDPKGLYKLAREGK  229 (234)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~  229 (234)
                      .....+..++..+...+...++.++++...        .....++++.|.+.+.+|..+.++...+++.
T Consensus        93 ~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~  161 (211)
T 1m7g_A           93 LFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGV  161 (211)
T ss_dssp             HHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTS
T ss_pred             HHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcc
Confidence            222334444444443334455555554431        1134579999999999998777777777654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.30  E-value=7.7e-13  Score=115.94  Aligned_cols=51  Identities=14%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      ..+++++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus       158 ~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~  208 (330)
T 2pt7_A          158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSC
T ss_pred             HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCee
Confidence            347899999999999999999999999999999999998 899999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.30  E-value=2.3e-13  Score=118.02  Aligned_cols=58  Identities=17%  Similarity=0.016  Sum_probs=52.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      .++++|+++.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++    +|+|...+
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v  158 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFA  158 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGG
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEe
Confidence            478899999998 78999999999999999999999999999999999988    58887643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.28  E-value=4.6e-11  Score=95.40  Aligned_cols=134  Identities=38%  Similarity=0.713  Sum_probs=85.4

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE-EEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcC
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (234)
                      .+...+|.+++|+|++||||||+++.|+..+. ...+.+ .++++.++.....+.++...++..++..+......+...+
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g   85 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNG   85 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCC
Confidence            34567899999999999999999999999887 444554 6777776543333345666666555544333333333445


Q ss_pred             ceEEEecCcccHHHHHHHHHhCCCC--CceEEEEeCChhhhhhcchhhHHHHHHcCcC
Q 026725          175 VICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKV  230 (234)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~ll~~~--~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~  230 (234)
                      ...+..........++.+++++...  ....++++.|.+.+.+|..+++++..+.+.+
T Consensus        86 ~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~  143 (186)
T 2yvu_A           86 VIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGEL  143 (186)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCC
T ss_pred             CEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcch
Confidence            4444443333434445555544332  2345799999999999987777776555443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.25  E-value=1.7e-12  Score=118.79  Aligned_cols=53  Identities=17%  Similarity=0.066  Sum_probs=49.7

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ..+++++||++++ ++++|+||||||||||+++|+|++. |++|+|.++|+++..
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEAG   69 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSCS
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEccc
Confidence            4679999999999 9999999999999999999999998 999999999998863

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.25  E-value=2.3e-12  Score=106.24  Aligned_cols=49  Identities=20%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ..-|+|+||++++|++++|+||||||||||+++|+|++  |  |.|.+ |.++.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~   58 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCT   58 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEE
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eeccc
Confidence            45689999999999999999999999999999999977  4  88998 76654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.25  E-value=4.9e-13  Score=117.51  Aligned_cols=67  Identities=24%  Similarity=0.131  Sum_probs=61.9

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++. |.+|.|.+.+.++.
T Consensus        28 ~~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~   94 (337)
T 2qm8_A           28 TLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPS   94 (337)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGG
T ss_pred             HHHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCc
Confidence            46788899999988889999999999999999999999999999999999998 88999999988774

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.25  E-value=1.6e-12  Score=110.28  Aligned_cols=60  Identities=23%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCcccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCR  142 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v~  142 (234)
                      +++++++++.    .+++++|  +++|++++|+||||||||||+++|+|++. |. +|.|.++|+++.
T Consensus         5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A            5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIE   65 (261)
T ss_dssp             -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCC
T ss_pred             CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcce
Confidence            3455666543    5789999  99999999999999999999999999998 76 899999998764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.24  E-value=9.1e-12  Score=111.51  Aligned_cols=39  Identities=28%  Similarity=0.304  Sum_probs=35.7

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +...+++++|++.+| +++|+|+||||||||+++|++++.
T Consensus        47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            346789999999999 999999999999999999988774

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.24  E-value=4.6e-11  Score=112.47  Aligned_cols=153  Identities=53%  Similarity=0.963  Sum_probs=99.3

Q ss_pred             eceeeecCCccccccceeeec----CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhh
Q 026725           80 TNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~----~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~  155 (234)
                      .|+.|+-..+..-+.-...-+    +|.+++|+|++||||||+++.|+..+...+...+.++++.++........++..+
T Consensus        26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~d  105 (630)
T 1x6v_B           26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED  105 (630)
T ss_dssp             --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHH
T ss_pred             ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhh
Confidence            355555443333333333233    7889999999999999999999987742233467888888776544444566666


Q ss_pred             HHHHHHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026725          156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKVKG  232 (234)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~  232 (234)
                      +.++++.+..+...+...+...+..+..+.+..++.+++++...+  +..++++.|.+.+.+|..+++|+..+++.+..
T Consensus       106 ree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~  184 (630)
T 1x6v_B          106 REENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG  184 (630)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----
T ss_pred             hHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHH
Confidence            777777665555555566666666655555556667777665443  45689999999999999999999888776543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.23  E-value=2.5e-12  Score=119.12  Aligned_cols=65  Identities=12%  Similarity=0.126  Sum_probs=56.2

Q ss_pred             cceeeceeeecCCcccccccee-eecCCEEEEEEcCCCCcHHHHHHH--HHhhcccCCccEEEEcCccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~-~i~~Ge~~~liG~nGsGKSTLlr~--l~gll~~p~~G~i~~~g~~v  141 (234)
                      +++.+++.+.+++.++|++++| .+++|++++|+||||||||||+++  ++|+++ |++|.|+++|++.
T Consensus        12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~   79 (525)
T 1tf7_A           12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEET   79 (525)
T ss_dssp             --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC
T ss_pred             CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence            4555666666778899999999 999999999999999999999999  789887 7899999999773

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.23  E-value=4.2e-13  Score=122.53  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-E-EEEcCc
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-T-YILDGD  139 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~-i~~~g~  139 (234)
                      .++++++|+++.|+      ++||++++|++++|+||||||||||+|+|+|++. |.+| + |+++|+
T Consensus       116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~  176 (460)
T 2npi_A          116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD  176 (460)
T ss_dssp             CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC
T ss_pred             cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC
Confidence            35788999999985      7999999999999999999999999999999998 8999 8 999984

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.23  E-value=5.3e-12  Score=122.39  Aligned_cols=47  Identities=32%  Similarity=0.379  Sum_probs=41.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHH-HHhhc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL  126 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~-l~gll  126 (234)
                      +.++++++++     ..|+|+||+|++|++++|+|+||||||||+++ |+|++
T Consensus       501 ~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          501 GWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             CEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            4688888875     26999999999999999999999999999997 77765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.22  E-value=5.4e-11  Score=111.30  Aligned_cols=135  Identities=39%  Similarity=0.648  Sum_probs=103.6

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceE
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (234)
                      -++|.+++|.|++||||||+++.|+..+...+ ...+.++++.++..+..+.++...++.++++++..+...+...+..+
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V  472 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV  472 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence            46788999999999999999999998775211 22678888887655555556777777777777666766666677777


Q ss_pred             EEecCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHHcCcCCCC
Q 026725          178 IACLISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGT  233 (234)
Q Consensus       178 ~~~~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~~  233 (234)
                      +..+..+.+..++.+++++...+ +..++++.|.+.|.+|+.+++|++.+++++.++
T Consensus       473 I~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~  529 (573)
T 1m8p_A          473 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGF  529 (573)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSC
T ss_pred             EEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHH
Confidence            77776666677777777766544 456899999999999999999998888877654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.22  E-value=6.8e-11  Score=95.73  Aligned_cols=119  Identities=24%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCChh--hHHHHHHHHHHH
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKAE--DRVENIRRIGEV  166 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~~--~~~~~~~~~~~~  166 (234)
                      +.+..++.++|++++|+||||||||||+++|++.+     |.+.++++++....   ....++..+  .....+..+...
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence            33344667899999999999999999999999976     77899998874210   001123222  222222222222


Q ss_pred             HHHHHhcCceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      .......+...+.......+..++.+.++..  .+..++++.|.+.+.+|.
T Consensus        94 ~~~~~~~g~~viid~~~~~~~~~~~l~~~~~--~~~vv~l~~~~e~l~~Rl  142 (200)
T 4eun_A           94 MDARADAGVSTIITCSALKRTYRDVLREGPP--SVDFLHLDGPAEVIKGRM  142 (200)
T ss_dssp             HHHHHHTTCCEEEEECCCCHHHHHHHTTSSS--CCEEEEEECCHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEchhhhHHHHHHHHHhCC--ceEEEEEeCCHHHHHHHH
Confidence            2222222322233333334455555555443  334478999999988774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.19  E-value=5.8e-12  Score=109.09  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ..++....+.++||++++|++++|+||||||||||++.|+|++. |.+|+|.+.|.|+.
T Consensus        82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~  139 (302)
T 3b9q_A           82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTF  139 (302)
T ss_dssp             HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCS
T ss_pred             HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeeccc
Confidence            33444444567899999999999999999999999999999998 88999999998864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.17  E-value=8.1e-11  Score=95.84  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++.|  .++++|++++|+||||||||||+|+|+|+++
T Consensus        10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45666  6899999999999999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.15  E-value=4.6e-12  Score=109.78  Aligned_cols=65  Identities=20%  Similarity=0.053  Sum_probs=56.6

Q ss_pred             ccceeeceeeecCCccccccceeee-------------------cCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEE
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQ-------------------QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTY  134 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i-------------------~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i  134 (234)
                      ..++++++++.|  .++++++++.+                   .+|++++|+|+||||||||+++|+|++.. |++|.|
T Consensus        36 ~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i  113 (308)
T 1sq5_A           36 EDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV  113 (308)
T ss_dssp             TTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             cccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence            368889999999  37889999988                   99999999999999999999999998752 678999


Q ss_pred             EE---cCccc
Q 026725          135 IL---DGDNC  141 (234)
Q Consensus       135 ~~---~g~~v  141 (234)
                      .+   +|...
T Consensus       114 ~vi~~d~~~~  123 (308)
T 1sq5_A          114 ELITTDGFLH  123 (308)
T ss_dssp             EEEEGGGGBC
T ss_pred             EEEecCCccC
Confidence            98   77654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.14  E-value=5.4e-12  Score=111.79  Aligned_cols=61  Identities=21%  Similarity=0.101  Sum_probs=52.9

Q ss_pred             eeeceeee---cCC--cccc---------ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           78 KSTNILWH---KNS--VDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        78 ~~~~l~~~---~~~--~~~l---------~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +++++++.   |+.  ..++         +++||.+++|++++|+||||||||||+++|+|+++ |.+|.|.++|.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~  211 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDV  211 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESS
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCc
Confidence            56777777   642  2344         99999999999999999999999999999999998 89999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.12  E-value=2.5e-11  Score=101.50  Aligned_cols=43  Identities=19%  Similarity=0.168  Sum_probs=26.7

Q ss_pred             ecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.+++.+++++||++++|++++|+||||||||||+++|+|++.
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456789999999999999999999999999999999999763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.12  E-value=1.3e-10  Score=95.06  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhccc-C-----CccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-R-----GKLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p-----~~G~i~~~g~~  140 (234)
                      -+++|++++|+||||||||||+++|+|++.. +     ..+.+++++++
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            5899999999999999999999999996652 2     34578887765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.10  E-value=1.8e-10  Score=112.44  Aligned_cols=44  Identities=25%  Similarity=0.233  Sum_probs=38.1

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      +.+++++++.     ..|+|+||+|++|++++|+|+||||||||+++|+
T Consensus       628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            3577777753     3699999999999999999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.08  E-value=5.3e-11  Score=105.30  Aligned_cols=49  Identities=27%  Similarity=0.326  Sum_probs=45.7

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ..+||++++|++++|+||||||||||++.|+|++. |.+|+|.+.|.|+.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~  196 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTF  196 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCS
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEeccccc
Confidence            57899999999999999999999999999999998 78999999998874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.06  E-value=1.3e-10  Score=96.06  Aligned_cols=47  Identities=21%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCcccc
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCR  142 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~v~  142 (234)
                      -....++|++++|+||||||||||+++|+|+++ |  ..|.|.+.+.+.+
T Consensus         9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~   57 (219)
T 1s96_A            9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPR   57 (219)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCC
T ss_pred             ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCC
Confidence            345689999999999999999999999999886 4  5788888877654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.06  E-value=7.6e-11  Score=107.95  Aligned_cols=50  Identities=18%  Similarity=0.285  Sum_probs=45.6

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++||++.+|++++|+|+||||||||+++|+|++. +.+|+|.+.+.+..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~  332 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTF  332 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCccc
Confidence            468999999999999999999999999999999998 78999999876653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.05  E-value=1.7e-10  Score=93.06  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=36.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc-----ccCCccEEEE
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-----HWRGKLTYIL  136 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll-----~~p~~G~i~~  136 (234)
                      +++++|+++.|+ ..++++  |.+.+|..++|+|+||||||||++.|+|..     . |+.|++.+
T Consensus         3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~-~~~G~~~~   64 (210)
T 1pui_A            3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQL   64 (210)
T ss_dssp             --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CC
T ss_pred             chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc-CCCcccee
Confidence            467899999997 467777  999999999999999999999999999976     4 66676543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.03  E-value=2e-09  Score=84.76  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=63.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCChh--hHHHHHHHHHHHHHHHHhcC
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKAE--DRVENIRRIGEVAKLFADAG  174 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  174 (234)
                      .+|++++|+|+|||||||++++|++.+     |.+.++++++....   ....+...+  ....++..+..........+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN   80 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999965     67889988874210   001122222  22222222222221111223


Q ss_pred             ceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcc
Q 026725          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD  217 (234)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~  217 (234)
                      ...+..........++.+++..  ..+..++++.|.+.+.+|.
T Consensus        81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~  121 (175)
T 1knq_A           81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRL  121 (175)
T ss_dssp             SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHH
T ss_pred             CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHH
Confidence            2333333333444444444322  2334589999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.01  E-value=8.3e-11  Score=97.23  Aligned_cols=38  Identities=24%  Similarity=0.404  Sum_probs=22.9

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHH-hhc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QAL  126 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~-gll  126 (234)
                      .+...++||++++|++++|+||||||||||+++|+ |++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45678999999999999999999999999999999 987

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.01  E-value=5.6e-11  Score=107.23  Aligned_cols=64  Identities=23%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .++++++.+.|+...+++++ +. .+|++++|+||||||||||+++|+|++. +.+|.|.+.++++.
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIE  206 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCC
T ss_pred             CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccch
Confidence            56778888888777788888 54 8999999999999999999999999998 78899999888764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.01  E-value=3.7e-11  Score=101.30  Aligned_cols=53  Identities=15%  Similarity=0.270  Sum_probs=37.3

Q ss_pred             ccceeece-eeec-CCccccccceeeecC---CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           75 TVAKSTNI-LWHK-NSVDKRDRQQLLQQK---GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        75 ~~~~~~~l-~~~~-~~~~~l~~vs~~i~~---Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++++++|+ ++.| ++..+++++||++.+   |++++|+|++||||||++++|++.+.
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            47899999 9999 788899999999999   99999999999999999999999764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.00  E-value=3.4e-11  Score=104.68  Aligned_cols=54  Identities=20%  Similarity=0.041  Sum_probs=44.8

Q ss_pred             cceeeceeeecCCccccccceee-----------------------ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLL-----------------------QQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~-----------------------i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G  132 (234)
                      .+++++|++.|+  ++++++++.                       +++|++++|+||||||||||+++|+|++. |..|
T Consensus        43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G  119 (312)
T 3aez_A           43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDH  119 (312)
T ss_dssp             CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTT
T ss_pred             eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCC
Confidence            577788888884  455555553                       89999999999999999999999999998 6544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.99  E-value=2.7e-10  Score=100.70  Aligned_cols=46  Identities=17%  Similarity=0.032  Sum_probs=41.5

Q ss_pred             ccccceeeecC--CEEEEEEcCCCCcHHHHHHHHHhhcccCCc----cEEEEc
Q 026725           91 KRDRQQLLQQK--GCVIWITGLSGSGKSTLACALSQALHWRGK----LTYILD  137 (234)
Q Consensus        91 ~l~~vs~~i~~--Ge~~~liG~nGsGKSTLlr~l~gll~~p~~----G~i~~~  137 (234)
                      +.+.|++++.+  |+.++|+|+||||||||+++|+|++. |.+    |.++++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~  208 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVF  208 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHH
Confidence            35779999999  99999999999999999999999998 888    887763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.99  E-value=2.9e-10  Score=90.67  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=37.4

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++|++++|+||||||||||+++|++.   ++.|.|.++|+++.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~   46 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLW   46 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchh
Confidence            4789999999999999999999999996   56799999998864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.98  E-value=1e-11  Score=103.31  Aligned_cols=59  Identities=19%  Similarity=0.055  Sum_probs=42.5

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ..++++|+...++.       ++++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.++.
T Consensus         8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~~   66 (227)
T 1qhl_A            8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTEA   66 (227)
T ss_dssp             EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC--------
T ss_pred             eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEcc
Confidence            35777787766642       456666 8999999999999999999999998 89999999998874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.97  E-value=5.4e-11  Score=95.23  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=60.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccc----ccccCCCChhhHHHHHHHHHHHHHH-HHh--cCce
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAEDRVENIRRIGEVAKL-FAD--AGVI  176 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~  176 (234)
                      .++|+||||||||||+++|+|++.      |.++|.+....    ....+++..++... ...  ..... +..  ....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~~-~~~--~~~~~~~~~~~~~~~   72 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTEG-KKK--IFSSKFFTSKKLVGS   72 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETTC-CEE--EEEETTCCCSSEETT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCcH-HHH--HHHhhcCCccccccc
Confidence            589999999999999999999885      22333322110    00011121111000 000  00000 000  0000


Q ss_pred             EEEecCcccHHHHHHHHH-----hCCCCCceEEEEeC--ChhhhhhcchhhHHHHHHc
Q 026725          177 CIACLISPYRKDRDACRS-----MLPEGDFIEVFMDV--PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-----ll~~~~l~~~~ld~--P~~~l~~R~~~~l~~~~~~  227 (234)
                      ....++.+.++....++.     ++..+.+  +++||  |++.++....+.+.+.+.+
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~l--lilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKV--IIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCE--EEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCE--EEEeCCCCcccCCHHHHHHHHHHHhc
Confidence            011122334455566775     6788888  89999  9999987777777777765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.97  E-value=1.1e-10  Score=105.28  Aligned_cols=49  Identities=22%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             cceeeceeeecCCccccccceeeecCCEE--EEEEcCCCCcHHHHHHHHHhhc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~--~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+++++ ++.|++.+ ++++||++++|++  ++|+|+||||||||+++|+|+.
T Consensus        16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            456666 78898888 9999999999999  9999999999999999999974

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.96  E-value=2.2e-10  Score=99.27  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      +|++++|+||||||||||+++|+|++. |.+|+|.+.|.|+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCC
Confidence            799999999999999999999999998 899999999998753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.94  E-value=3.8e-10  Score=92.17  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             Ccccccccee-eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725           88 SVDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus        88 ~~~~l~~vs~-~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      +...|+++.. .+++|++++|+||||||||||++.|++.+. +.+|.+.+.+
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~   58 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVT   58 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEE
Confidence            3556888887 899999999999999999999999998876 5566666644

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.94  E-value=7.1e-09  Score=96.46  Aligned_cols=133  Identities=49%  Similarity=0.840  Sum_probs=89.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEE
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (234)
                      +.|.+++++|++||||||+++.|+..+...+.....++++.++.....+.++...++..+++.+..+...+...+...+.
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~  449 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC  449 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            56889999999999999999999986642223346778877765444444566666666555544444444445555555


Q ss_pred             ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCCC
Q 026725          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG  232 (234)
Q Consensus       180 ~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~~  232 (234)
                      ......+..++.+++++...++..++++.|.+.+.+|..+++|+..+.+.+..
T Consensus       450 d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~  502 (546)
T 2gks_A          450 ALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKG  502 (546)
T ss_dssp             ECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------C
T ss_pred             EcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHH
Confidence            55555566667777777665655689999999999999888887655555443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.93  E-value=2.8e-09  Score=104.26  Aligned_cols=46  Identities=11%  Similarity=0.031  Sum_probs=35.1

Q ss_pred             cCcccHHHHHHHHHhCCCCC-ceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          181 LISPYRKDRDACRSMLPEGD-FIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       181 ~~~~~~~~~~~~~~ll~~~~-l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++.+.+++..++++++..+. -.-+++|||+..|+..+.+.+++.++
T Consensus       806 LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~  852 (916)
T 3pih_A          806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLH  852 (916)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            45566777788899887652 12289999999999888888887765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.91  E-value=7.3e-10  Score=89.22  Aligned_cols=42  Identities=26%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      |+++.+|++++|+||||||||||+++|+|++  |   .+.+.+.++.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~---~~~~~~~~~~   42 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A---EIKISISHTT   42 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S---SEEECCCEEC
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C---CeEEeceecc
Confidence            5778899999999999999999999999985  3   3667766554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.89  E-value=4.7e-10  Score=96.87  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=22.5

Q ss_pred             eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh-cccCCccEEEEcCccc
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILDGDNC  141 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl-l~~p~~G~i~~~g~~v  141 (234)
                      +|++++|+.+.++++++|+|      +|+|+||||||||+++|.|. +. |.+| +.++|.++
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~   56 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKI   56 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCccc
Confidence            47889999999999999998      99999999999999999997 55 7777 66655543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.87  E-value=7.8e-10  Score=90.02  Aligned_cols=44  Identities=32%  Similarity=0.320  Sum_probs=37.9

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhccc--CCccEEEEcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~--p~~G~i~~~g~~v~  142 (234)
                      .++|++++|+||||||||||+++|+|++.+  +..|.|.++|..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            579999999999999999999999999872  24788998887653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.86  E-value=1.9e-09  Score=94.26  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=41.2

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ..++|++++|+||||||||||+++|+|++. |.+|+|.+.|.|+..
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFR  169 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccc
Confidence            457899999999999999999999999998 899999999988753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.85  E-value=2.4e-09  Score=93.11  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++++++.+| +++|+|+||||||||+++|..++
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            578889999 99999999999999999999654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.84  E-value=2.9e-08  Score=79.09  Aligned_cols=38  Identities=32%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      |++++|+||||||||||+++|++    +.+|.++++|+++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA----QLDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----HSSSEEEEEHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc----ccCCeEEEcccchhh
Confidence            78999999999999999999987    356889999988753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.83  E-value=8.3e-10  Score=94.49  Aligned_cols=47  Identities=26%  Similarity=0.155  Sum_probs=41.6

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEE
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYIL  136 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~  136 (234)
                      ..+|+++++.+++|++++|+|+||||||||++.|++.+. +.+| .+.+
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~   69 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGL   69 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEE
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEE
Confidence            457999999999999999999999999999999999987 6666 5644

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.83  E-value=1.3e-09  Score=92.87  Aligned_cols=38  Identities=29%  Similarity=0.258  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .++|+||||||||||+++|+|+.. |++|+|.++|+++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~   41 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIP   41 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-------------CC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccC
Confidence            589999999999999999999988 89999999998763

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.82  E-value=4.7e-09  Score=102.96  Aligned_cols=35  Identities=23%  Similarity=0.070  Sum_probs=32.8

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHH
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL  122 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l  122 (234)
                      +..+++|++|++.+|++++|+||||||||||+|++
T Consensus       648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence            34678899999999999999999999999999999

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.82  E-value=7e-10  Score=102.44  Aligned_cols=51  Identities=14%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      ..+++++++.+++|+.++|+||||||||||+++|+|+++ |+.|.|.++|.+
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~~  297 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSC
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcc
Confidence            456788999999999999999999999999999999998 899999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.82  E-value=2.3e-09  Score=91.27  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             eecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        84 ~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +.++...+++++++++++|  ++|+||||||||||+|+|++.+. +  +.|.++|.++.
T Consensus        28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l~   81 (274)
T 2x8a_A           28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPELL   81 (274)
T ss_dssp             HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTTC
T ss_pred             HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHHH
Confidence            4455667899999999999  99999999999999999999876 4  78999998875

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.81  E-value=4.2e-09  Score=103.09  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=35.7

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +..+++|+||++++|++++|+||||||||||+|+++++.
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~  697 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT  697 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence            467889999999999999999999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.80  E-value=1.4e-08  Score=89.71  Aligned_cols=61  Identities=20%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             eceeeec--CCcccccccee-------eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccc
Q 026725           80 TNILWHK--NSVDKRDRQQL-------LQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNC  141 (234)
Q Consensus        80 ~~l~~~~--~~~~~l~~vs~-------~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v  141 (234)
                      .++++++  .....++++.+       ...+|++++|+||||||||||+++|+|++. +. +|.|...++++
T Consensus        92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~  162 (356)
T 3jvv_A           92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPI  162 (356)
T ss_dssp             EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred             cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcH
Confidence            3444444  23445667665       678899999999999999999999999998 55 57776555444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.79  E-value=7.8e-09  Score=95.64  Aligned_cols=130  Identities=12%  Similarity=0.065  Sum_probs=73.2

Q ss_pred             cceeeceeeecCCccccccc-eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE--EEEcCccccccccccCCCC
Q 026725           76 VAKSTNILWHKNSVDKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCRHGLNRDLSFK  152 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~--i~~~g~~v~~~~~~~~~~~  152 (234)
                      .+++++++..+++   ++.+ +..+.+|++++|+|+||||||||+++++|+.. +. |.  +++.+++..          
T Consensus       257 ~~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~-G~~vi~~~~ee~~----------  321 (525)
T 1tf7_A          257 RSSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-AN-KERAILFAYEESR----------  321 (525)
T ss_dssp             CCCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-TT-TCCEEEEESSSCH----------
T ss_pred             ccccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hC-CCCEEEEEEeCCH----------
Confidence            3455666655533   2222 45899999999999999999999999999887 54 54  566554321          


Q ss_pred             hhhHHHHHHHHH-HHHHHHHhcCceEEEe-----cCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc-----chhhH
Q 026725          153 AEDRVENIRRIG-EVAKLFADAGVICIAC-----LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR-----DPKGL  221 (234)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R-----~~~~l  221 (234)
                       .+.......+. .... +...+...+..     ++....+....++.+...+.+  +++| |++.++..     ..+.+
T Consensus       322 -~~l~~~~~~~g~~~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l--lilD-p~~~Ld~~~~~~~~~~~i  396 (525)
T 1tf7_A          322 -AQLLRNAYSWGMDFEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR--IAID-SLSALARGVSNNAFRQFV  396 (525)
T ss_dssp             -HHHHHHHHTTSCCHHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE-CHHHHTSSSCHHHHHHHH
T ss_pred             -HHHHHHHHHcCCCHHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE--EEEc-ChHHHHhhCChHHHHHHH
Confidence             11111100000 0000 11122222211     122333344445555666777  8999 99999876     45554


Q ss_pred             HHHH
Q 026725          222 YKLA  225 (234)
Q Consensus       222 ~~~~  225 (234)
                      ++.+
T Consensus       397 ~~ll  400 (525)
T 1tf7_A          397 IGVT  400 (525)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.78  E-value=1.4e-09  Score=93.74  Aligned_cols=46  Identities=28%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE---cCccccc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCRH  143 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~---~g~~v~~  143 (234)
                      |++.+|++++|+||||||||||+++|+|+.. |.+|+|.+   +|++++.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~  212 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTT  212 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCcee
Confidence            5677899999999999999999999999988 89999999   8887753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.78  E-value=3.5e-09  Score=85.72  Aligned_cols=28  Identities=36%  Similarity=0.335  Sum_probs=23.8

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999874

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.77  E-value=3.7e-09  Score=101.79  Aligned_cols=45  Identities=16%  Similarity=0.083  Sum_probs=37.2

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i  134 (234)
                      ++..+++|+||+   |++++|+||||||||||+|+|+|+...+..|.+
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            345678899999   999999999999999999999998642455643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.75  E-value=3.6e-09  Score=95.36  Aligned_cols=46  Identities=22%  Similarity=0.110  Sum_probs=39.1

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.++|++++|++..+++++||+|      +|+|+||||||||+++|+|...
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred             cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence            578899999999999999999998      9999999999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.75  E-value=8.8e-09  Score=90.71  Aligned_cols=52  Identities=21%  Similarity=0.176  Sum_probs=42.5

Q ss_pred             cccccc-eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCc----cE-EEEcCccc
Q 026725           90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGK----LT-YILDGDNC  141 (234)
Q Consensus        90 ~~l~~v-s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~----G~-i~~~g~~v  141 (234)
                      ..|+++ ++.+++|+++.|+||||||||||++.|++... .|++    |. +++++++.
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            456665 68999999999999999999999999999872 1444    57 89988653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.74  E-value=1.5e-08  Score=80.16  Aligned_cols=38  Identities=29%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G  132 (234)
                      +++++++.+| +++|+||||||||||+++|.+++. +..|
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-~~~~   55 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-GLSA   55 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-CCCT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-CCcc
Confidence            6889999999 999999999999999999999886 4433

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.73  E-value=3e-09  Score=94.52  Aligned_cols=48  Identities=27%  Similarity=0.261  Sum_probs=40.7

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccc
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNC  141 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v  141 (234)
                      ++++++  +++|++++|+||||||||||+++|+|++. |. +|.|.+.++++
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~  175 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPI  175 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSC
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccH
Confidence            455554  78999999999999999999999999998 66 79997766654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.73  E-value=1.6e-08  Score=83.29  Aligned_cols=42  Identities=17%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhh--cccC-----CccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQA--LHWR-----GKLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl--l~~p-----~~G~i~~~g~~  140 (234)
                      -+++|++++|+||||||||||++.|++.  +. +     ..|.+++++.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-IDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-hhcCCCCCeEEEEECCC
Confidence            4889999999999999999999999994  43 3     56889998865

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.72  E-value=6e-09  Score=103.21  Aligned_cols=52  Identities=17%  Similarity=0.049  Sum_probs=42.5

Q ss_pred             ccceeec-----eeeec-CCccccccceeeecC-------CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           75 TVAKSTN-----ILWHK-NSVDKRDRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        75 ~~~~~~~-----l~~~~-~~~~~l~~vs~~i~~-------Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++++++     +++.| ++..+++|++|++.+       |++++|+||||||||||+|++ |++.
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4678888     88888 677899999999987       999999999999999999999 8875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.71  E-value=2.6e-09  Score=89.26  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++++.+.|+...+++++++++++|  +.|+||||||||||+++|++.+.   .|.+.+++.++.
T Consensus        26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~   86 (254)
T 1ixz_A           26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV   86 (254)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHH
Confidence            44566666777778899999999999  89999999999999999999764   588999887764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.70  E-value=3e-09  Score=90.26  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++++.+.|+...+++++++++++|  +.|+||||||||||+++|++.+.   .|.+.+++.++.
T Consensus        50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~  110 (278)
T 1iy2_A           50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  110 (278)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH
Confidence            44566777777778899999999999  89999999999999999999764   588999887764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.70  E-value=1.6e-08  Score=78.36  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc--EEEEcCcccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCR  142 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G--~i~~~g~~v~  142 (234)
                      +|+.++|+||||||||||+++|++.+. + +|  .+++++.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHhh
Confidence            899999999999999999999999887 4 47  8888887664

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.70  E-value=1.1e-09  Score=103.13  Aligned_cols=62  Identities=21%  Similarity=0.026  Sum_probs=35.7

Q ss_pred             cceeeceeeecCCc--cccccc----------eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcCccc
Q 026725           76 VAKSTNILWHKNSV--DKRDRQ----------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNC  141 (234)
Q Consensus        76 ~~~~~~l~~~~~~~--~~l~~v----------s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g~~v  141 (234)
                      .+.++|+++.|++.  ++++.+          +++++.   ++|+|+||||||||+++|+|++. | ++|.|.++|.++
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-P~~sG~vt~~g~~i   84 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-PRGSGIVTRCPLVL   84 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-CCCCCeEEEcCEEE
Confidence            35566777777542  233322          355554   99999999999999999999987 6 799999999885

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.68  E-value=3.2e-09  Score=85.72  Aligned_cols=37  Identities=30%  Similarity=0.365  Sum_probs=32.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      |++++|+||||||||||+++|+|++.  ++| |.++|.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~   37 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYT   37 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEec
Confidence            78999999999999999999999886  568 88888665

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.68  E-value=5e-10  Score=97.82  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             cceeeceeeecCCccccccceeeecCC-------EEEEEEcCCCCcHHHHHHHHHhhc----ccCCccEEEEcCccc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKG-------CVIWITGLSGSGKSTLACALSQAL----HWRGKLTYILDGDNC  141 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~G-------e~~~liG~nGsGKSTLlr~l~gll----~~p~~G~i~~~g~~v  141 (234)
                      .++.++++..|+...+++++++.+..|       +.++|+||||+|||||+++|++.+    . +.+|.+..++.++
T Consensus        18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-~~sg~~~~~~~~l   93 (334)
T 1in4_A           18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-VTSGPVLVKQGDM   93 (334)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-EEETTTCCSHHHH
T ss_pred             HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE-EEechHhcCHHHH
Confidence            456677888888888999999999876       899999999999999999999988    4 4556555544443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.67  E-value=7.8e-08  Score=83.22  Aligned_cols=48  Identities=19%  Similarity=0.307  Sum_probs=41.6

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++...+|++++|+|+|||||||+++.|++.+. +.+|.+.+.+.|..
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~  143 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTT
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccc
Confidence            4567778999999999999999999999999997 67788988776654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.67  E-value=2.8e-08  Score=80.51  Aligned_cols=49  Identities=24%  Similarity=0.180  Sum_probs=39.3

Q ss_pred             cccccccee-eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           89 VDKRDRQQL-LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        89 ~~~l~~vs~-~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .+.|+++.. .+++|++++|+|+||||||||++.|++  . ++.+.++++.+.
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~   55 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEG   55 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSC
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCC
Confidence            345666654 689999999999999999999999999  3 556777777554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=1e-08  Score=82.71  Aligned_cols=40  Identities=25%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        88 ~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ...+++|+||++.+|++++|+|++||||||+++.|++.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3467999999999999999999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.66  E-value=1.3e-08  Score=81.87  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=28.9

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G  132 (234)
                      +++.+|++++|+|||||||||++++|++++. |..|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~-~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS-TSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTT-CCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC-CCeE
Confidence            4678999999999999999999999999885 5444

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.64  E-value=9.2e-09  Score=88.77  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=34.3

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE---cCcccc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR  142 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~---~g~~v~  142 (234)
                      +++.+|++++|+||||||||||+++|+ ++. |.+|+|.+   +|++++
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t  206 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTT  206 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CC
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCce
Confidence            456789999999999999999999999 887 89999999   887765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.63  E-value=5.8e-09  Score=82.90  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCC---ccEEEEcCcccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCR  142 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~---~G~i~~~g~~v~  142 (234)
                      ++++|+|+||||||||+++|+|++. |.   .|.|.++|.++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~   44 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDF   44 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccc
Confidence            5799999999999999999999998 66   799999998854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.62  E-value=3.5e-09  Score=91.72  Aligned_cols=45  Identities=24%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE---cCcccc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR  142 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~---~g~~v~  142 (234)
                      +++.+|++++|+|+||||||||+++|+|+.. +.+|.|.+   +|+.++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt  215 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTT  215 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------C
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccc
Confidence            6788999999999999999999999999887 88999998   776654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.61  E-value=2.8e-09  Score=92.91  Aligned_cols=57  Identities=16%  Similarity=0.064  Sum_probs=45.5

Q ss_pred             eceeeecCCccccccceeeecCCE------EEEEEcCCCCcHHHHHHHHHhhccc-CCccEEEE
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGC------VIWITGLSGSGKSTLACALSQALHW-RGKLTYIL  136 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge------~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i~~  136 (234)
                      +.+++.|++...+.+++..+.+++      +++|+||||||||||+++|++++.. +++|.+.+
T Consensus        64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            345667888888888888887776      9999999999999999999999862 34555443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.61  E-value=2e-08  Score=81.29  Aligned_cols=29  Identities=48%  Similarity=0.516  Sum_probs=26.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|++++|+||||||||||+++|+|++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999999999876

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.60  E-value=4.9e-09  Score=88.06  Aligned_cols=42  Identities=26%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHH---hhcccCCccEEE--------EcCcccc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYI--------LDGDNCR  142 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~---gll~~p~~G~i~--------~~g~~v~  142 (234)
                      .+|++++|+|||||||||++++|+   |+.. +++|.++        .+|.++.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-~d~g~i~r~~~~~~~~~g~~~~   77 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-LDSGAIYRVLALAALHHQVDIS   77 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-EEHHHHHHHHHHHHHHTTCCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-CCCCceehHhHHHHHHcCCCcc
Confidence            789999999999999999999999   8776 7889888        7776653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.60  E-value=3.6e-07  Score=76.45  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=65.9

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------ccCCCChhhHHHH-H-HHHHHHHHH
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------RDLSFKAEDRVEN-I-RRIGEVAKL  169 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------~~~~~~~~~~~~~-~-~~~~~~~~~  169 (234)
                      ..++|.+++|+|+|||||||+++.|+..+.   .+.+.++++.++....      ...+....+..+. . ..+..+...
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  104 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK  104 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence            577899999999999999999999999764   2568889988764321      1223333332221 1 111122222


Q ss_pred             HHhcC-ceEEEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcchhh
Q 026725          170 FADAG-VICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       170 ~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~~~  220 (234)
                      +...+ ...+......... +......+...+  +..++++.|.+.+.+|..+.
T Consensus       105 ~~~~g~~vVid~~~~~~~~-~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          105 LSSLGYNLLIEGTLRTVDV-PKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HHHTTCCEEEECCTTSSHH-HHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHhcCCCEEEeCCCCCHHH-HHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence            22222 2222222222222 222223333233  33357789999998886543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.60  E-value=1.1e-08  Score=88.04  Aligned_cols=61  Identities=18%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +..+++++.|+...  ++++|+  +|++++++|+||+||||+++.|++++. +..|.+.+.+.|..
T Consensus        77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ  137 (295)
T ss_dssp             HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSS
T ss_pred             HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcc
Confidence            44567777786543  788888  999999999999999999999999997 67889998877764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.57  E-value=2.6e-08  Score=80.54  Aligned_cols=44  Identities=34%  Similarity=0.301  Sum_probs=37.5

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ...+|++++|+|+|||||||++++|++++. +.+|.+.+.+.|..
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHMDDH   61 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccCcc
Confidence            467899999999999999999999999987 66788877665543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.54  E-value=3.3e-07  Score=73.71  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=60.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHHhcCce
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (234)
                      +.+++|+|++||||||+++.|++.+     |...++++++....     .....+.......++..   +...+ ..+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~---l~~~~-~~~~~   88 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAA---IGERL-ASREP   88 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHH---HHHHH-TSSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHH---HHHHH-hcCCC
Confidence            5689999999999999999999876     34567777664210     00111222222232322   22222 22222


Q ss_pred             EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      .+..........++.+..+... ....++++.|.+.+.+|..
T Consensus        89 vivd~~~~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~Rl~  129 (202)
T 3t61_A           89 VVVSCSALKRSYRDKLRESAPG-GLAFVFLHGSESVLAERMH  129 (202)
T ss_dssp             CEEECCCCSHHHHHHHHHTSTT-CCEEEEEECCHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHhcCC-CeEEEEEeCCHHHHHHHHH
Confidence            3333333345556666665532 2345889999999987753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.53  E-value=3.5e-08  Score=78.42  Aligned_cols=36  Identities=14%  Similarity=0.076  Sum_probs=28.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEE
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI  135 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~  135 (234)
                      .+|++++|+||||||||||+++|++.++....|.|.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            368999999999999999999999987511334443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.53  E-value=1.2e-07  Score=85.03  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=33.8

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHH--HhhcccCC-----ccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACAL--SQALHWRG-----KLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l--~gll~~p~-----~G~i~~~g~~  140 (234)
                      -+++|+++.|+||||||||||++.|  +++++ +.     .+.+++++++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-LDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-GGGTCCSSEEEEEESSS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-cccCCCCCcEEEEeCCC
Confidence            4899999999999999999999955  45444 32     3488998876

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.52  E-value=6.9e-07  Score=70.04  Aligned_cols=114  Identities=19%  Similarity=0.104  Sum_probs=58.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-------CCC-------ChhhHHHHHHHHHHHH
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------LSF-------KAEDRVENIRRIGEVA  167 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~  167 (234)
                      |.+++|+|++||||||+++.|+..+..   +.+.++.+++.......       +.+       .....+.....+....
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence            568999999999999999999987641   34444443321110000       000       0111112122111112


Q ss_pred             HHHHhcCceEEEecCcc-cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          168 KLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ..+...+...+...... ....++..++.+...++..++++.|.+.+.+|..
T Consensus        80 ~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~  131 (178)
T 1qhx_A           80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRET  131 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHH
T ss_pred             HHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHH
Confidence            22223333333333221 1222344455555556656778999999988864

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.50  E-value=5.7e-08  Score=94.03  Aligned_cols=40  Identities=23%  Similarity=0.105  Sum_probs=36.3

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++..+++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            456789999999 9999999999999999999999999753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.50  E-value=5.9e-08  Score=84.47  Aligned_cols=49  Identities=12%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++|++.+|++++|+|+||+||||++..|++.+. +.+|.+.+.+.|+.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~  144 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTF  144 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCc
Confidence            68999999999999999999999999999999998 67888988776654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.48  E-value=9.2e-09  Score=85.69  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH---hhcccCCccEEEEcCcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYILDGDN  140 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~---gll~~p~~G~i~~~g~~  140 (234)
                      ++++++|+||||||||||+++|+   |+.. ++.|.+.+++.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-~~~G~i~~~~~~   67 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-LSSGHFLRENIK   67 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-EEHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-ecHHHHHHHHHh
Confidence            47999999999999999999999   9876 788888776543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.48  E-value=4.7e-08  Score=80.71  Aligned_cols=43  Identities=21%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      -+.+.++|++++|.|+|||||||++++|+++     +|.|.+.+++..
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~~   55 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPVE   55 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTHH
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCHH
Confidence            3456789999999999999999999999996     478888887753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.47  E-value=4e-08  Score=85.27  Aligned_cols=41  Identities=22%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc--------ccCCccEEEEcCccccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL--------HWRGKLTYILDGDNCRH  143 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll--------~~p~~G~i~~~g~~v~~  143 (234)
                      =++++|+|+||||||||+++|+|+.        . ++.|+|.+||.++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-~d~G~i~idg~~l~~   52 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-NEFGEVSVDDQLIGD   52 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-SSCCSCCEEEEEECT
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-ecCcccCccHHHHhC
Confidence            3689999999999999999999986        4 789999999988753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.47  E-value=3.9e-08  Score=77.78  Aligned_cols=36  Identities=28%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G  132 (234)
                      +|.+.+|+.++|+||||||||||+++|++.+. +..|
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g   67 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKG   67 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcC
Confidence            56788899999999999999999999999886 4444

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.46  E-value=1.5e-08  Score=88.81  Aligned_cols=67  Identities=22%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ..+++.++..+.|+...+++++++.+.+|.+++|+|++|+|||||++.|++.+. +..+.+.+-+.+.
T Consensus        28 i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~d~   94 (341)
T 2p67_A           28 MTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-REGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred             hhHhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeecC
Confidence            345666777777777788999999999999999999999999999999999886 5566665544443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.45  E-value=2.3e-07  Score=82.00  Aligned_cols=35  Identities=29%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ...++++++++.+| +++|+|||||||||++++|.+
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            45678999999999 999999999999999999998

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.44  E-value=8.8e-07  Score=74.97  Aligned_cols=30  Identities=30%  Similarity=0.305  Sum_probs=27.7

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|++++|+||||||||||++.+++.+.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            378999999999999999999999999765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.44  E-value=2e-07  Score=75.70  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=26.8

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      |+...+|++++|+||||||||||++.|++.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45566899999999999999999999999764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.42  E-value=1.7e-07  Score=84.41  Aligned_cols=49  Identities=24%  Similarity=0.165  Sum_probs=37.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~  131 (234)
                      -++++|+ +.|++..     .+++.+|++++|+||||||||||+++|++++. +.+
T Consensus         6 ~l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~-~~~   54 (430)
T 1w1w_A            6 GLELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG-VRS   54 (430)
T ss_dssp             EEEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT-C--
T ss_pred             EEEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc-ccc
Confidence            4567777 5776432     35677899999999999999999999999886 543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.41  E-value=1.1e-07  Score=83.83  Aligned_cols=49  Identities=22%  Similarity=0.041  Sum_probs=34.0

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc-Ccc
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN  140 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~-g~~  140 (234)
                      -++++++. .+|++++|+||||||||||+++|+|++..+.+|.|.++ |..
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g  254 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG  254 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence            35666664 47999999999999999999999997642678999876 644

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.39  E-value=1e-07  Score=84.78  Aligned_cols=44  Identities=25%  Similarity=0.057  Sum_probs=38.5

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~  136 (234)
                      ..+++++++.+++|++++|+||||||||||+++|++.+    +|.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEE
Confidence            36789999999999999999999999999999999964    356554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.35  E-value=2.3e-07  Score=75.36  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=26.4

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|++++|+||||||||||++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.30  E-value=1.1e-06  Score=72.09  Aligned_cols=50  Identities=14%  Similarity=0.058  Sum_probs=36.0

Q ss_pred             cccccc-eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           90 DKRDRQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        90 ~~l~~v-s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      ..|+++ .--+++|+++.|.|+||||||||+..++......+.+.++++.+
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            345555 55689999999999999999999766544333255566677654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.28  E-value=3.9e-07  Score=80.54  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=31.2

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ..++++++++.+| +++|+||||||||||+.+|+..+
T Consensus        12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            4466788999999 78899999999999999999654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.28  E-value=1.5e-07  Score=88.46  Aligned_cols=62  Identities=15%  Similarity=0.076  Sum_probs=53.3

Q ss_pred             eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCc-cEEEEcCcccc
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCR  142 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~-G~i~~~g~~v~  142 (234)
                      ++++..||...+++++++.+..|+.+.|+||||||||||+++|++++. +.. |.+.+.+....
T Consensus        38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~  100 (604)
T 3k1j_A           38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPED  100 (604)
T ss_dssp             SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTC
T ss_pred             cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCccc
Confidence            455566788889999999999999999999999999999999999998 454 88888776654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.28  E-value=5.3e-07  Score=71.84  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccC-----------CccEEEEcCccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWR-----------GKLTYILDGDNC  141 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p-----------~~G~i~~~g~~v  141 (234)
                      -.++|+|+||||||||++.++|... +           .+|.|.++|+++
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEE
Confidence            3689999999999999999999765 3           468899998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.27  E-value=2e-07  Score=83.94  Aligned_cols=47  Identities=19%  Similarity=0.135  Sum_probs=39.6

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc----------cCCccEEEEcC
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----------WRGKLTYILDG  138 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~----------~p~~G~i~~~g  138 (234)
                      .++++|+++.|+.++|+|+||||||||+++|++..+          .|..|.+.+++
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~  203 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE  203 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence            478999999999999999999999999999999721          15567777664

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.25  E-value=9.7e-08  Score=88.72  Aligned_cols=59  Identities=20%  Similarity=0.221  Sum_probs=49.2

Q ss_pred             eeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        79 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      .+++...|+...++.++++++ +|++++|+||||+|||||+++|++.+. +..|.+.+.+.
T Consensus        86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~  144 (543)
T 3m6a_A           86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGGV  144 (543)
T ss_dssp             CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC-
T ss_pred             HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEeccc
Confidence            455666676677888999988 899999999999999999999999987 67787777663

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.25  E-value=4.4e-07  Score=70.84  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      .|++++|+|+|||||||++++|++.+. +    .+++++++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-~----~~id~d~~   38 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-M----EFYDSDQE   38 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT-C----EEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC-C----CEEeccHH
Confidence            467899999999999999999999875 2    56776554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.21  E-value=6.6e-07  Score=77.78  Aligned_cols=38  Identities=24%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh-hcccCCccEEEEcCcccc
Q 026725          104 VIWITGLSGSGKSTLACALSQ-ALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g-ll~~p~~G~i~~~g~~v~  142 (234)
                      .+.|.||||+||||++++|++ ++. +..|.+.++|.+..
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~   76 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFV   76 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSC-TTCCC---------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeec
Confidence            389999999999999999999 565 88899999887653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.20  E-value=6.2e-07  Score=80.87  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             eceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ++++..|+...  ++++|+  +|++++++|+|||||||++..|++.+. +..+.+.+.+.|..
T Consensus        80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ  137 (425)
T ss_dssp             HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSS
T ss_pred             HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecccc
Confidence            45666776544  678888  899999999999999999999999998 77888888766654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.20  E-value=1e-06  Score=78.73  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=35.8

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHh------------hcccCCccEEEEcCc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQ------------ALHWRGKLTYILDGD  139 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~g------------ll~~p~~G~i~~~g~  139 (234)
                      ++.+|..++|+|+||+|||||+++|+|            .+. |..|.+.+.|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-p~~G~v~v~~~   68 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID-PEEAKVAVPDE   68 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-TTEEEEEECCH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec-ceeeeeeeCCc
Confidence            467899999999999999999999999            344 78899998873

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.17  E-value=1.6e-05  Score=66.59  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHH--HHHHHHHHhcCceE
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI--GEVAKLFADAGVIC  177 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  177 (234)
                      .++.+++|+|++||||||+++.|+..+...+.-.+.++++.+.....   ++.... ....+..  ..+...+..  ...
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~---~~~~~~-e~~~~~~~~~~i~~~l~~--~~v   75 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP---VWKEKY-EEFIKKSTYRLIDSALKN--YWV   75 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS---SCCGGG-HHHHHHHHHHHHHHHHTT--SEE
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh---hhhHHH-HHHHHHHHHHHHHHHhhC--CEE
Confidence            35678999999999999999999986542222233457777653221   122211 1111111  112222222  222


Q ss_pred             EEecCcccHHHHHHHHHhCCCCC--ceEEEEeCChhhhhhcch
Q 026725          178 IACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       178 ~~~~~~~~~~~~~~~~~ll~~~~--l~~~~ld~P~~~l~~R~~  218 (234)
                      +..........++.+..+....+  ...++++.|.+.+.+|..
T Consensus        76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~  118 (260)
T 3a4m_A           76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNI  118 (260)
T ss_dssp             EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHH
T ss_pred             EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHH
Confidence            33322223333444443332222  234788999999988753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.15  E-value=5.9e-07  Score=82.62  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++++...+....++.++++++++|  +.|+||||+|||||+++|++...   .+.+.+++.++.
T Consensus        41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~  101 (499)
T 2dhr_A           41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  101 (499)
T ss_dssp             HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred             HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence            34455555566667899999999999  89999999999999999999764   578888887764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.15  E-value=1.8e-06  Score=71.39  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             cccceeeec---CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725           92 RDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus        92 l~~vs~~i~---~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      +.++|+.+.   +|.+++|.|++||||||+++.|+..+. + .+.+...
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~   59 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMT   59 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEE
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCceee
Confidence            566677665   999999999999999999999999887 5 5555443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.14  E-value=1.3e-06  Score=70.49  Aligned_cols=33  Identities=36%  Similarity=0.395  Sum_probs=28.9

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++--++.+|++++|+|+|||||||+++.|++.+
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            344568899999999999999999999999976

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.14  E-value=2.4e-05  Score=66.72  Aligned_cols=42  Identities=21%  Similarity=0.374  Sum_probs=33.9

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ....|.++.|+|||||||||+++.|+..+.   .+.+.++++.++
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R   70 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK   70 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence            345688999999999999999999987553   366788887665

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.14  E-value=1.1e-05  Score=62.84  Aligned_cols=36  Identities=33%  Similarity=0.412  Sum_probs=27.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+++|.|++||||||+++.|+.. .   .|...++.+.++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~-~---~~~~~i~~d~~r   38 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAK-N---PGFYNINRDDYR   38 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH-S---TTEEEECHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhh-c---CCcEEecHHHHH
Confidence            57899999999999999999872 1   245566655443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.12  E-value=6.5e-07  Score=77.05  Aligned_cols=59  Identities=19%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             eceeeecCCcccccc-ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           80 TNILWHKNSVDKRDR-QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        80 ~~l~~~~~~~~~l~~-vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +++...|++..  ++ ++++.+ |++++++|++|+||||++..|++.+. +..+.+.+.+.|..
T Consensus        78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADVY  137 (297)
T ss_dssp             HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred             HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence            45566676543  56 888877 99999999999999999999999987 66778877666654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.12  E-value=6e-07  Score=73.15  Aligned_cols=35  Identities=37%  Similarity=0.377  Sum_probs=28.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc--cCCccEEEE
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH--WRGKLTYIL  136 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~--~p~~G~i~~  136 (234)
                      +.+++|+|+|||||||+++.|++.+.  .++.|.++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            56899999999999999999998762  145566554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.10  E-value=1.9e-06  Score=68.81  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc----C------CccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHW----R------GKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~----p------~~G~i~~~g~~v  141 (234)
                      .++|+|+||||||||++.++|....    |      ..|.+.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            5899999999999999999997421    2      257888888754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.09  E-value=1.3e-06  Score=75.11  Aligned_cols=41  Identities=20%  Similarity=0.154  Sum_probs=33.8

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCccc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNC  141 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~~v  141 (234)
                      .+|++++|+|+|||||||+++.|++.+. +.+| .+.+-+.|.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCEEEEEecCc
Confidence            5799999999999999999999999987 5566 666554444

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.08  E-value=1.3e-06  Score=80.47  Aligned_cols=36  Identities=28%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ...++++++++.+| +.+|+|+||||||||+.+|..+
T Consensus        48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            34678899999999 9999999999999999999776

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.06  E-value=2e-06  Score=76.53  Aligned_cols=52  Identities=13%  Similarity=0.023  Sum_probs=46.1

Q ss_pred             cceeeceeeecCC-ccccc--------------cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           76 VAKSTNILWHKNS-VDKRD--------------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        76 ~~~~~~l~~~~~~-~~~l~--------------~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -+.++|+++.|.. +..++              |+++.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            4678899999964 56788              8999999999999999999999999999999764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.05  E-value=4.4e-06  Score=64.46  Aligned_cols=32  Identities=34%  Similarity=0.426  Sum_probs=25.7

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus        16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            345555554 89999999999999999998655

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.02  E-value=2.5e-05  Score=70.01  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (234)
                      .+.-.++.+++|+|++||||||+++.|+..+     |-+.++.+++..            ......   .+...+. .+.
T Consensus       252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~------------~~~~~~---~~~~~l~-~g~  310 (416)
T 3zvl_A          252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS------------WQRCVS---SCQAALR-QGK  310 (416)
T ss_dssp             CSCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSCS------------HHHHHH---HHHHHHH-TTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHHH------------HHHHHH---HHHHHHh-cCC
Confidence            3445678999999999999999999997643     445677665531            111111   1222222 233


Q ss_pred             eEEEecCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcchhh
Q 026725          176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~~~  220 (234)
                      ..++.........++...+++..  ..+..++++.|.+.|.+|..+.
T Consensus       311 ~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R  357 (416)
T 3zvl_A          311 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  357 (416)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence            33343333344444444444432  2344578899999998887544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.01  E-value=1.2e-05  Score=63.43  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=29.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .+|.+++|+|++||||||+++.|+..+.     ...++.+.+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-----~~~i~~D~~~   40 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLR-----LPLLSKDAFK   40 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC-----CeEecHHHHH
Confidence            5688999999999999999999987553     2245555543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.99  E-value=3.5e-06  Score=66.81  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=26.8

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|++..+|..++|+|++||||||+++.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888999999999999999999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.98  E-value=3.5e-06  Score=74.00  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=34.2

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +++.+++|+|++|||||||++.|.|.+. +.+|.|.+.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecC
Confidence            4588999999999999999999999887 6677776665544

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.94  E-value=4.1e-06  Score=67.50  Aligned_cols=30  Identities=23%  Similarity=0.208  Sum_probs=26.5

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ...+|.+++|+|||||||||+++.|+..+.
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            467899999999999999999999998663

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.93  E-value=1.4e-06  Score=75.77  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             ceeeecCCccccccceeeecCCEE--EEEEcCCCCcHHHHHHHHHhhcc
Q 026725           81 NILWHKNSVDKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        81 ~l~~~~~~~~~l~~vs~~i~~Ge~--~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++..+|...+++.++..++.|++  +.+.||+|+||||+++++++.+.
T Consensus        23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            444556777888999999999998  99999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.89  E-value=6.9e-06  Score=70.34  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.++.+++|.|+||||||||++.|.+++.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45789999999999999999999999987

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.88  E-value=3.9e-05  Score=59.99  Aligned_cols=28  Identities=36%  Similarity=0.609  Sum_probs=19.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++.+++|.|++||||||+++.|+..+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3577899999999999999999987654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.85  E-value=4.7e-06  Score=73.14  Aligned_cols=42  Identities=21%  Similarity=0.092  Sum_probs=30.9

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh--hcccCCccEE
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ--ALHWRGKLTY  134 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g--ll~~p~~G~i  134 (234)
                      ..++++++++++   .++|+|++|||||||++.|.|  +++ +++|.+
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-~~~~~v   67 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-RGSGIV   67 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-CCSSSC
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-CCCCcc
Confidence            468899999998   899999999999999999999  444 444443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.83  E-value=8.8e-06  Score=65.33  Aligned_cols=32  Identities=34%  Similarity=0.479  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +++|+|+|||||||++++|++ +     |...++++++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~   35 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVV   35 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHH
Confidence            689999999999999999998 3     3445665543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.83  E-value=7.5e-05  Score=63.37  Aligned_cols=36  Identities=33%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .++.|+|++||||||+++.|+..+    .|...++.+.++
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r   38 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR   38 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence            578999999999999999998732    145566655543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.82  E-value=5.2e-06  Score=66.33  Aligned_cols=57  Identities=19%  Similarity=0.223  Sum_probs=37.7

Q ss_pred             eeecCCc-cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc----c---cCCccEEEEcCcc
Q 026725           83 LWHKNSV-DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----H---WRGKLTYILDGDN  140 (234)
Q Consensus        83 ~~~~~~~-~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll----~---~p~~G~i~~~g~~  140 (234)
                      +|.|++. .+++++|+..+++. ++|+|++|+|||||++.+.+--    .   .+..+.+.+++..
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            3455443 67889999988875 7899999999999999998621    1   1345667776643

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.77  E-value=4.8e-06  Score=73.25  Aligned_cols=38  Identities=29%  Similarity=0.320  Sum_probs=34.2

Q ss_pred             cccccceeeecCCEE--EEEEcCCCCcHHHHHHHHHhhcc
Q 026725           90 DKRDRQQLLQQKGCV--IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~--~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++.+++.+++|++  ++|+|++||||||++++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            467888899999988  99999999999999999999765

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.77  E-value=1.3e-05  Score=64.21  Aligned_cols=21  Identities=43%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +++|+|+|||||||+++.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.76  E-value=1.5e-05  Score=62.67  Aligned_cols=27  Identities=37%  Similarity=0.516  Sum_probs=23.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+|.+++|+|++||||||+++.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998644

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.75  E-value=2.5e-05  Score=63.18  Aligned_cols=33  Identities=30%  Similarity=0.305  Sum_probs=25.7

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34555555 4899999999999999999875443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.70  E-value=8.4e-05  Score=67.29  Aligned_cols=39  Identities=21%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ...|+++..-+++|+++.|.|++|+|||||+..+++...
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356788887899999999999999999999999998765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.69  E-value=3e-05  Score=68.26  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccE-EEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-YILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~-i~~~g~~  140 (234)
                      -+++|+++.|.||||||||||+..++.... +..|. +++++..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~E~   99 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDAEH   99 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccc
Confidence            378999999999999999999999999876 44554 5777654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.69  E-value=3.1e-05  Score=61.26  Aligned_cols=49  Identities=20%  Similarity=0.235  Sum_probs=27.1

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc----c---cCCccEEEEcCc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL----H---WRGKLTYILDGD  139 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll----~---~p~~G~i~~~g~  139 (234)
                      .+++++++..++. .++++|++|+|||||++.+.+-.    .   .+..+.+.+++.
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~   67 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI   67 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence            4678899988887 57899999999999999999731    1   023456666664

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.68  E-value=3.7e-05  Score=63.83  Aligned_cols=46  Identities=22%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +.++++.+++|  +.|.||+|+|||||+++|++.+..   -.+.+++.++.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~---~~~~i~~~~~~   82 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFV   82 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC---CEEEECSCSST
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC---CEEEEeHHHHH
Confidence            44555566666  889999999999999999997752   24677776654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.68  E-value=2.3e-05  Score=60.52  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|+|++||||||+++.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999998764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.66  E-value=2.6e-05  Score=67.96  Aligned_cols=36  Identities=11%  Similarity=0.171  Sum_probs=28.0

Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      ..++.++..+.+  +++|||+..|+......+++.+++
T Consensus       264 ~~a~~l~~~p~~--lllDEp~~~LD~~~~~~l~~~l~~  299 (339)
T 3qkt_A          264 AMSLYLAGEISL--LILDEPTPYLDEERRRKLITIMER  299 (339)
T ss_dssp             HHHHHTTTTTCE--EEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence            455666777777  899999999988887888776653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.65  E-value=3.5e-05  Score=61.08  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=28.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDN  140 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~  140 (234)
                      .+++|+|+||||||||++.|.+.+...  .-|.|..++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            578999999999999999999976521  23667766543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.64  E-value=6.4e-06  Score=72.63  Aligned_cols=45  Identities=22%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -+.+.+++..|+...+.++++|+|      +|+|++|+|||||++.|.+..
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            355677888888888889999887      999999999999999997753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.59  E-value=3e-05  Score=75.29  Aligned_cols=28  Identities=36%  Similarity=0.509  Sum_probs=27.5

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHH
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLl  119 (234)
                      |+|||++|+.|++++|.|.||||||||+
T Consensus        26 Lkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           26 LKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             CCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             CCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            8999999999999999999999999998

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.58  E-value=3.9e-05  Score=63.09  Aligned_cols=28  Identities=36%  Similarity=0.413  Sum_probs=24.6

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.+|.+++|+|++||||||+++.|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4678899999999999999999999844

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.55  E-value=4.4e-05  Score=59.91  Aligned_cols=26  Identities=27%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      |.+++|.|++||||||+++.|+..+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999988654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.54  E-value=4.9e-05  Score=59.20  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++|..++|+|++|+|||||++.|++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999999999853

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.53  E-value=4.9e-05  Score=63.49  Aligned_cols=25  Identities=28%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|+||||||||||++.|+..+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            3789999999999999999998654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.53  E-value=3.7e-05  Score=60.26  Aligned_cols=28  Identities=32%  Similarity=0.273  Sum_probs=24.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.++.+++|+|++||||||+++.|+..+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            3567789999999999999999998655

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.52  E-value=4.7e-05  Score=72.28  Aligned_cols=39  Identities=23%  Similarity=0.071  Sum_probs=29.9

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhccc-CCccEE
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTY  134 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~-p~~G~i  134 (234)
                      |++++++..++|+|++|+|||||++.|++.... +..|+|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            467889999999999999999999999976541 144655

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.52  E-value=5.3e-05  Score=59.52  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+..++|+|++||||||+++.|+..+.
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999988664

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.50  E-value=4.6e-05  Score=59.53  Aligned_cols=33  Identities=48%  Similarity=0.558  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      .++|+|++||||||+++.|+..+.     ..+++.+++
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~   38 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL   38 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHH
Confidence            589999999999999999998664     235665554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.49  E-value=5.3e-05  Score=58.21  Aligned_cols=19  Identities=63%  Similarity=0.844  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 026725          104 VIWITGLSGSGKSTLACAL  122 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l  122 (234)
                      +++|.|++||||||+++.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.48  E-value=7.4e-05  Score=60.44  Aligned_cols=24  Identities=42%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++-+++|.|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999987

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.48  E-value=5.1e-05  Score=65.07  Aligned_cols=28  Identities=32%  Similarity=0.216  Sum_probs=24.2

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++.+++|+|++|+|||||++.|.|.-
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            3455689999999999999999999963

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.47  E-value=5e-05  Score=74.47  Aligned_cols=29  Identities=41%  Similarity=0.586  Sum_probs=27.7

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLl  119 (234)
                      =|+|||++|+++++++|.|+||||||||+
T Consensus        33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            48999999999999999999999999986

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.47  E-value=6.3e-05  Score=62.39  Aligned_cols=26  Identities=35%  Similarity=0.578  Sum_probs=22.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+-+++|.||+||||||+++.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45589999999999999999999654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.46  E-value=7.9e-05  Score=59.44  Aligned_cols=27  Identities=41%  Similarity=0.603  Sum_probs=24.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|.+++|.|++||||||+++.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999998775

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.46  E-value=8.8e-05  Score=66.81  Aligned_cols=39  Identities=26%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc-----------cCCccEEEEcCccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH-----------WRGKLTYILDGDNC  141 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~-----------~p~~G~i~~~g~~v  141 (234)
                      -.++|+|+||+|||||++.|+|...           .+..|.+.++|+++
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            4799999999999999999999742           14468888998764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.46  E-value=7.7e-05  Score=59.34  Aligned_cols=26  Identities=31%  Similarity=0.572  Sum_probs=24.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +|.+++|.|++||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999865

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.45  E-value=0.00043  Score=60.35  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccC------CccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p------~~G~i~~~g~~  140 (234)
                      -+++|+++.|.|++|||||||+..++.....|      ..+.++++.+.
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            48899999999999999999999998853212      34566777654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.45  E-value=4.5e-05  Score=74.71  Aligned_cols=29  Identities=41%  Similarity=0.512  Sum_probs=27.8

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHH
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLl  119 (234)
                      =|+|||++|+++++++|.|+||||||||+
T Consensus        13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           13 NLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            38999999999999999999999999997

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.44  E-value=7.3e-05  Score=59.27  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999664

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.43  E-value=9.1e-05  Score=58.78  Aligned_cols=35  Identities=43%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +..+++|+|++||||||+++.|+..      |...++.+++
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~   41 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL   41 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence            3568999999999999999999874      4446665543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.43  E-value=3.4e-05  Score=61.89  Aligned_cols=24  Identities=46%  Similarity=0.635  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.43  E-value=8e-05  Score=59.61  Aligned_cols=29  Identities=41%  Similarity=0.481  Sum_probs=25.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+|.+++|.|++||||||+++.|+..+.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999999987654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.42  E-value=8e-05  Score=58.77  Aligned_cols=29  Identities=31%  Similarity=0.418  Sum_probs=25.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++.+++|+|++||||||+++.|+..+.
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34678999999999999999999987553

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.42  E-value=0.0001  Score=64.69  Aligned_cols=42  Identities=29%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      -+++|+++.|.|+||||||||+..++......+...++++..
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            478999999999999999999988886554244445566654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.41  E-value=8.3e-05  Score=59.57  Aligned_cols=29  Identities=34%  Similarity=0.543  Sum_probs=25.2

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+|.+++|.|++||||||+++.|+..+.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999997654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.41  E-value=9.7e-05  Score=58.04  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++.+++|.|++||||||+++.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.41  E-value=8.1e-05  Score=66.40  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=32.6

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhh-----------cccCCccEEEEcCc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQA-----------LHWRGKLTYILDGD  139 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl-----------l~~p~~G~i~~~g~  139 (234)
                      .+..|..++|+|+||+|||||+++|+|.           +. |..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~-p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID-PNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C-CSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC-ceeEEEEECCc
Confidence            4567888999999999999999999987           33 66777777664

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.40  E-value=3.3e-05  Score=65.59  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCcc-EEEEcCc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGD  139 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G-~i~~~g~  139 (234)
                      ..+.|.||+|+||||++++|++.+. ...+ .+.++..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~-~~~~~~~~~~~~   84 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMT   84 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH-SCGGGEEEEEGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc-CCCcceEEeecc
Confidence            6899999999999999999999886 4444 4455533

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.40  E-value=4.1e-05  Score=60.65  Aligned_cols=30  Identities=33%  Similarity=0.345  Sum_probs=25.7

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+..+.+++|+|++||||||+++.|+..+.
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345678999999999999999999988653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.40  E-value=0.0001  Score=57.49  Aligned_cols=23  Identities=35%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|++|+|||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999984

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.38  E-value=0.00012  Score=64.64  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=30.6

Q ss_pred             CEE-EEEEcCCCCcHHHHHHHHHhhccc----------CCccEEEEcCccc
Q 026725          102 GCV-IWITGLSGSGKSTLACALSQALHW----------RGKLTYILDGDNC  141 (234)
Q Consensus       102 Ge~-~~liG~nGsGKSTLlr~l~gll~~----------p~~G~i~~~g~~v  141 (234)
                      |-. ++|+|++|||||||++.|+|....          +..|.+.++|..+
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            444 899999999999999999996531          3568899988664

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.35  E-value=0.00011  Score=58.88  Aligned_cols=23  Identities=48%  Similarity=0.505  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999997644

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.34  E-value=0.00011  Score=56.57  Aligned_cols=24  Identities=33%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|++|+|||||++.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999853

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.33  E-value=0.00011  Score=57.55  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|++||||||+++.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.33  E-value=9.9e-05  Score=66.59  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=33.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ++.+++++|++||||||++..|+..+. +..+.+.+-+-|+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCc
Confidence            689999999999999999999999987 5667776654443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.32  E-value=0.00012  Score=58.20  Aligned_cols=24  Identities=42%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|++||||||+++.|+..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            799999999999999999998653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.30  E-value=3.4e-05  Score=70.51  Aligned_cols=51  Identities=25%  Similarity=0.342  Sum_probs=37.7

Q ss_pred             cCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        86 ~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +.....+.++++.+++|  +.|+||+|+|||||+|+|++....   --+.+++.++
T Consensus        35 l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---~f~~is~~~~   85 (476)
T 2ce7_A           35 LKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---PFFHISGSDF   85 (476)
T ss_dssp             HHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGT
T ss_pred             hhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---CeeeCCHHHH
Confidence            33445677788888888  789999999999999999997642   2344554443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.27  E-value=0.00025  Score=58.79  Aligned_cols=43  Identities=28%  Similarity=0.312  Sum_probs=30.2

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccC-----CccEEEEcCcccc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCR  142 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-----~~G~i~~~g~~v~  142 (234)
                      .+.-+++|.|++||||||+++.|+..+..+     ....+.++.+++.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            345689999999999999999998865422     1234456655553

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.27  E-value=0.00014  Score=63.97  Aligned_cols=31  Identities=32%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++..+++.+| +.+|+|+|||||||++.+|.=
T Consensus        17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4566676664 899999999999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.27  E-value=0.00017  Score=55.73  Aligned_cols=26  Identities=42%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      =++++|+|+.||||||+++.|+..+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999988654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.26  E-value=0.00016  Score=58.56  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=23.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|.+++|+|++||||||+++.|+..+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            567899999999999999999988654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.25  E-value=0.00019  Score=56.20  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+.+++|+|++||||||+++.|+..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.25  E-value=0.00014  Score=62.19  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +.+.++..+.|.||+|+|||||+++|++.+.   .+.+.+++.++
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l   85 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL   85 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHH
Confidence            4567888999999999999999999999764   35666665443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.25  E-value=0.00014  Score=66.84  Aligned_cols=47  Identities=17%  Similarity=-0.058  Sum_probs=35.7

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHh-hcccCCccEEEEcCcc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQ-ALHWRGKLTYILDGDN  140 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g-ll~~p~~G~i~~~g~~  140 (234)
                      .+++++.++..+.|.|.+||||||++++|.. ++...+.+.+.+.+.|
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD  206 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID  206 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence            4788899999999999999999999999875 3332445666554433

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.24  E-value=0.00019  Score=57.26  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=24.6

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -..+.+++|+|++||||||+++.|+..+.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566899999999999999999987654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.24  E-value=0.00022  Score=63.00  Aligned_cols=35  Identities=23%  Similarity=0.041  Sum_probs=28.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~  136 (234)
                      .+..++|+|+|||||||+++.|+..+. ...+.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~   68 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVII   68 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEE
Confidence            566789999999999999999998776 45555544

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.23  E-value=0.00066  Score=62.60  Aligned_cols=42  Identities=26%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ....+++++|++||||||+++.|+..+.++.-....++.+++
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~   74 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY   74 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence            455789999999999999999998877544434445555444

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.22  E-value=0.00014  Score=57.12  Aligned_cols=34  Identities=41%  Similarity=0.470  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      .+++|+|++||||||+++.|+..+..     ..++.+++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~-----~~id~D~~   36 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGV-----GLLDTDVA   36 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC-----CEEeCchH
Confidence            36899999999999999999886542     25555554

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.22  E-value=0.00022  Score=56.84  Aligned_cols=27  Identities=30%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.21  E-value=0.00019  Score=56.59  Aligned_cols=25  Identities=32%  Similarity=0.251  Sum_probs=22.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            3789999999999999999998775

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.20  E-value=0.00017  Score=55.78  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|+|++||||||+++.|+..+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999988653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.19  E-value=0.00019  Score=58.41  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++.+++|+|++||||||+++.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.19  E-value=0.00028  Score=64.93  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDN  140 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~~  140 (234)
                      .+.|.+++|+|++||||||+.+.|+..+....  ....++||++
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            47889999999999999999999999886211  2244667665

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.19  E-value=0.00021  Score=57.49  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999977553

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.18  E-value=0.00018  Score=58.38  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+++|+|++||||||+++.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999987654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.18  E-value=0.00023  Score=55.92  Aligned_cols=24  Identities=42%  Similarity=0.548  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998663

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.17  E-value=0.00034  Score=60.39  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccC------CccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p------~~G~i~~~g~~  140 (234)
                      -+++|+++.|.|++|||||||+..++.....+      ..+.++++.+.
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            57899999999999999999999998754323      34567776654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.15  E-value=0.00025  Score=54.57  Aligned_cols=24  Identities=42%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.14  E-value=0.00026  Score=57.01  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+|++||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999976543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.13  E-value=0.00018  Score=56.37  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999985

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.13  E-value=0.0003  Score=58.24  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=23.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++-+++|+|++||||||+++.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.08  E-value=0.0015  Score=59.23  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      ....++.++|.+||||||+++.|+..+..+...+..++
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            34568999999999999999999987654443445544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.07  E-value=0.00037  Score=57.06  Aligned_cols=32  Identities=38%  Similarity=0.439  Sum_probs=27.2

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +-...+..++.|+||+||||+|.++.|+..+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            45567889999999999999999999987653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.05  E-value=0.00051  Score=55.41  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=24.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            577899999999999999999998765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.04  E-value=0.00035  Score=56.05  Aligned_cols=25  Identities=40%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      --+++|+|++||||||+++.|+..+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.03  E-value=0.00046  Score=59.61  Aligned_cols=37  Identities=30%  Similarity=0.226  Sum_probs=31.7

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .....+++..+.+ .|.-+.|+|+||+||||++..|.+
T Consensus       130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            3456678888888 789999999999999999999987

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.03  E-value=0.00017  Score=61.52  Aligned_cols=42  Identities=31%  Similarity=0.455  Sum_probs=25.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ++-+++|.|++||||||+++.|...+.....-...++.+++.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            456899999999999999999988553111112355555543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.98  E-value=0.0004  Score=56.19  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|-.++|+|++||||||+++.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999987653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.98  E-value=0.00064  Score=55.04  Aligned_cols=36  Identities=33%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ...++..-+.+ .|..+.|+||+|||||||+..|+..
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34455555554 5788999999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.98  E-value=0.00059  Score=54.19  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=23.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+.|.||+|+|||||+++|+..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6789999999999999999998775

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.97  E-value=0.00046  Score=58.47  Aligned_cols=25  Identities=44%  Similarity=0.555  Sum_probs=22.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .+..+++|+|++||||||+++.|+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999984

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.96  E-value=0.00072  Score=58.75  Aligned_cols=39  Identities=15%  Similarity=0.098  Sum_probs=30.4

Q ss_pred             cCCE--EEEEEcCCCCcHHHHHHHHHhhcccCC--ccEEEEcCc
Q 026725          100 QKGC--VIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGD  139 (234)
Q Consensus       100 ~~Ge--~~~liG~nGsGKSTLlr~l~gll~~p~--~G~i~~~g~  139 (234)
                      ..+.  .+.|.||+|+|||||++.+++.+. +.  ...++++..
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~i~~~   82 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKTTARFVYINGF   82 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSCCCEEEEEETT
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhcCeeEEEEeCc
Confidence            3456  899999999999999999999886 43  345666643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.93  E-value=0.00054  Score=56.11  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+|++|+|||||++.|.|...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            589999999999999999999654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.92  E-value=0.00043  Score=59.88  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccC---CccEEEEcC
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDG  138 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p---~~G~i~~~g  138 (234)
                      ..+..+.|.||+|+|||||++.+++.+...   ....++++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            567789999999999999999999977521   334566654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.92  E-value=0.00051  Score=55.90  Aligned_cols=23  Identities=35%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998755

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.90  E-value=0.0031  Score=54.99  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a   71 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL   71 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            44566655799999999999999999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.87  E-value=0.0011  Score=52.03  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc----ccCCcc----EEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL----HWRGKL----TYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll----~~p~~G----~i~~~g~~v  141 (234)
                      .++|+|++|+|||||++.+.+-.    ..|+.+    .+.++|..+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   67 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY   67 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence            58999999999999997766543    124455    566777554

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.87  E-value=0.00063  Score=55.64  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=23.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+..++|+|+.||||||+++.|+..+.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999999987654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.86  E-value=0.00058  Score=55.00  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998755

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.83  E-value=0.00077  Score=58.79  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++.+++|+||+|||||||+..|+..+.
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            4567999999999999999999998653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.83  E-value=0.00068  Score=59.19  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=22.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|+||+|||||||++.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999998653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.82  E-value=0.00069  Score=57.12  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=23.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++..+.|.||+|+||||+++++++.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            466789999999999999999998654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.82  E-value=0.00058  Score=54.95  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.+++|+|++||||||+++.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.82  E-value=0.0008  Score=51.90  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=24.0

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+..+.|.||+|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.80  E-value=0.00088  Score=54.54  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=25.0

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -+|.+++|.|++||||||+++.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999988775

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.80  E-value=0.00026  Score=56.72  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.|.||+|+|||||++.++..+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999988764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.79  E-value=0.00063  Score=56.98  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|||||||++.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999964

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.79  E-value=0.001  Score=58.58  Aligned_cols=37  Identities=32%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc----------ccCCccEEEEcC
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL----------HWRGKLTYILDG  138 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll----------~~p~~G~i~~~g  138 (234)
                      |..++|+|.+|+|||||++.|++.-          ..|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            3468999999999999999999832          015567777665

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.78  E-value=0.0072  Score=51.86  Aligned_cols=49  Identities=12%  Similarity=0.157  Sum_probs=35.5

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      ...|+++.--+++|+++.|.|++|+|||||+..++...-......+++.
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            3456666656999999999999999999999888754431222344444

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.00084  Score=52.45  Aligned_cols=24  Identities=33%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|++|+|||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999999854

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.73  E-value=0.00069  Score=55.82  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+|.+++|.|++||||||+++.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999988765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.73  E-value=0.00089  Score=50.69  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.73  E-value=0.00099  Score=57.77  Aligned_cols=25  Identities=40%  Similarity=0.596  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|+||+|||||||++.|+..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999998653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.72  E-value=0.0011  Score=54.38  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=25.6

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .-.+|.+++|.|++||||||+++.|...+.
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345799999999999999999999988765

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.72  E-value=0.00089  Score=55.46  Aligned_cols=28  Identities=36%  Similarity=0.476  Sum_probs=25.0

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+|.+++|.|++||||||+++.|...+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999988775

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.72  E-value=0.001  Score=54.53  Aligned_cols=27  Identities=26%  Similarity=0.210  Sum_probs=24.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|.+++|.|+.||||||+++.|+..+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999998763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.71  E-value=0.00048  Score=59.25  Aligned_cols=40  Identities=18%  Similarity=0.163  Sum_probs=29.5

Q ss_pred             CccccccceeeecCC--EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           88 SVDKRDRQQLLQQKG--CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        88 ~~~~l~~vs~~i~~G--e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ...+++.+...+..|  ..+.|.||+|+||||+++++++.+.
T Consensus        42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            334455555445554  3489999999999999999999764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.70  E-value=0.00081  Score=56.27  Aligned_cols=29  Identities=28%  Similarity=0.315  Sum_probs=24.8

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..+.-+.|.||+|+|||||+++++..+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35566799999999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.69  E-value=0.00092  Score=50.22  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|++|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.69  E-value=0.00064  Score=55.69  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=22.9

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .+..|+.+++.||+||||||++..+..
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            456899999999999999998876653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.68  E-value=0.001  Score=50.08  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|++|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998853

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.67  E-value=0.0012  Score=57.00  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.+++|+||+|||||||+..|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            5689999999999999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.67  E-value=0.001  Score=50.09  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999988643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.67  E-value=0.0011  Score=50.07  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|++|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.66  E-value=0.0011  Score=53.71  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.|+||+||||+|.++.|+..+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999998654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.64  E-value=0.0011  Score=50.08  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|++|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.63  E-value=0.0011  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.62  E-value=0.0012  Score=50.13  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|++|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.62  E-value=0.001  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            48999999999999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.62  E-value=0.0016  Score=57.20  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=32.5

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +++|+++.|.|++|||||||+..++..........++++..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            78999999999999999999988876554234456677764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.62  E-value=0.0013  Score=50.42  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +.-.++|+|++|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557899999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.62  E-value=0.0012  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.61  E-value=0.0012  Score=50.15  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5799999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.61  E-value=0.0011  Score=50.20  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+--
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.61  E-value=0.0012  Score=49.83  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|++|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.59  E-value=0.0012  Score=50.47  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998743

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.59  E-value=0.0013  Score=53.66  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=24.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|.++++-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999998775

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.58  E-value=0.001  Score=51.22  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            355678999999999999999998764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.58  E-value=0.0013  Score=56.37  Aligned_cols=27  Identities=30%  Similarity=0.307  Sum_probs=23.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+..+.|.||+|+|||||++.|+..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            456789999999999999999999775

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.58  E-value=0.0011  Score=50.28  Aligned_cols=22  Identities=41%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.56  E-value=0.0013  Score=50.47  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.55  E-value=0.0015  Score=53.74  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=23.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+.-+.|.||+|+||||++++++..+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4445688999999999999999998664

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.55  E-value=0.0014  Score=53.50  Aligned_cols=28  Identities=36%  Similarity=0.532  Sum_probs=25.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+|.++++-|++||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999999999876

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.55  E-value=0.00085  Score=50.88  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999997743

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.54  E-value=0.0018  Score=55.90  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=23.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.+++|+||+|||||||+..|+..+.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            356899999999999999999997653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.53  E-value=0.00086  Score=55.84  Aligned_cols=29  Identities=31%  Similarity=0.222  Sum_probs=24.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++.+++|.|+.||||||+++.|+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35778999999999999999999987663

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.53  E-value=0.0013  Score=51.33  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|++|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.53  E-value=0.0015  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.52  E-value=0.0014  Score=51.02  Aligned_cols=23  Identities=35%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999998853

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.51  E-value=0.0015  Score=50.91  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.50  E-value=0.0015  Score=50.50  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.49  E-value=0.0016  Score=50.39  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.|.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47999999999999999998743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.49  E-value=0.0016  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998843

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.48  E-value=0.0014  Score=55.27  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|++|+|||||++.|+|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999853

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.48  E-value=0.00058  Score=56.71  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=25.2

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..+....|  +.|.||+|+|||||+++|+..+.
T Consensus        38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence            334445555  77999999999999999998654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.47  E-value=0.0024  Score=48.51  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .-.++++|++|+|||||++.+.+-
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.47  E-value=0.0017  Score=49.02  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|++|+|||||++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.46  E-value=0.0017  Score=50.53  Aligned_cols=24  Identities=25%  Similarity=0.061  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+|++|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            479999999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.46  E-value=0.0014  Score=50.88  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            37899999999999999998853

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.45  E-value=0.0017  Score=49.73  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            48999999999999999998643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.45  E-value=0.0012  Score=51.53  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.45  E-value=0.0011  Score=50.73  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.44  E-value=0.0017  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.44  E-value=0.0018  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.43  E-value=0.0018  Score=50.42  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|.+|+|||||++.|.+-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.43  E-value=0.0034  Score=56.72  Aligned_cols=27  Identities=30%  Similarity=0.587  Sum_probs=25.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+++++|++||||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999998876

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.43  E-value=0.0018  Score=49.42  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.43  E-value=0.0018  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998743

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.41  E-value=0.002  Score=55.27  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -+++|+++.|.|++|||||||+..++.-
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999988863

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.39  E-value=0.0021  Score=51.32  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.|.+..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.39  E-value=0.002  Score=49.50  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.38  E-value=0.0019  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.38  E-value=0.0023  Score=50.59  Aligned_cols=32  Identities=31%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++..-+. -.|.-+.|.|+||+|||||+..|..
T Consensus         7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            7 WHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3333333 4577899999999999999988865

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.36  E-value=0.002  Score=51.56  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .--.++|+|.+|||||||++.|++.+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            33579999999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.35  E-value=0.0021  Score=50.53  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.33  E-value=0.0021  Score=49.96  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.32  E-value=0.0022  Score=49.93  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+.-
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.31  E-value=0.0023  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.31  E-value=0.0023  Score=49.22  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|++|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.30  E-value=0.0023  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.29  E-value=0.0024  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5799999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.0022  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|++|+|||||++.+.+-
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            35899999999999999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.0023  Score=50.17  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998743

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.27  E-value=0.0021  Score=51.01  Aligned_cols=33  Identities=15%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             ccceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        93 ~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++.|.-..--.++|+|++|+|||||++.+.+-
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            344444334446899999999999999999874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.27  E-value=0.0023  Score=48.33  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=23.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+.-+.|.||+|+|||++++.|.....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            3455689999999999999999998653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.26  E-value=0.003  Score=48.52  Aligned_cols=23  Identities=17%  Similarity=0.153  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|++|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.26  E-value=0.0022  Score=56.53  Aligned_cols=21  Identities=52%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|++|+|||||++.|++.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999986

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.25  E-value=0.0025  Score=54.16  Aligned_cols=29  Identities=21%  Similarity=0.143  Sum_probs=24.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+..+.|.||+|+|||+|+++|+..+.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34455678889999999999999998764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.25  E-value=0.0027  Score=51.54  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=22.8

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      +++|+++.|.|++|+|||||+-.++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.25  E-value=0.0026  Score=49.57  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.24  E-value=0.0025  Score=54.52  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.0019  Score=56.41  Aligned_cols=26  Identities=38%  Similarity=0.333  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ..-.++++|++|+|||||++.|++..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999999854

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.24  E-value=0.0026  Score=53.71  Aligned_cols=28  Identities=32%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+..+.|.||+|+||||+++.++..+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455789999999999999999988774

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.24  E-value=0.0022  Score=57.69  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=23.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..+.|.||+|+|||||+++|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999773

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.24  E-value=0.0015  Score=50.30  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .+.-.++|+|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.22  E-value=0.0025  Score=53.18  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|||||||++.|.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            57999999999999999999963

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.22  E-value=0.0026  Score=57.86  Aligned_cols=37  Identities=27%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++.+ +.+-+|+.++|+|+||+|||||++.|+....
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            445555 5677899999999999999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.22  E-value=0.0025  Score=50.27  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.-.++|+|.+|+|||||++.+.+-.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34468999999999999999998854

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.22  E-value=0.0028  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998743

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.21  E-value=0.0026  Score=48.94  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|++|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999985

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.21  E-value=0.0026  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            57999999999999999998854

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.20  E-value=0.0026  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.20  E-value=0.003  Score=56.37  Aligned_cols=25  Identities=44%  Similarity=0.606  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|+||+|||||||+..|+..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4789999999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.19  E-value=0.0027  Score=54.32  Aligned_cols=23  Identities=35%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -+++|+|.+|+|||||++.|.|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47899999999999999999985

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0027  Score=50.57  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999988643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.18  E-value=0.0027  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.18  E-value=0.003  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.17  E-value=0.003  Score=49.04  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.16  E-value=0.003  Score=49.55  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .-.++|+|++|+|||||++.+.+-
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999875

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.16  E-value=0.0039  Score=49.37  Aligned_cols=25  Identities=32%  Similarity=0.210  Sum_probs=20.5

Q ss_pred             CCEEEEEEcCCCCcHHHHH-HHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLA-CALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLl-r~l~gl  125 (234)
                      +|.++.+.|+.||||||++ +.+..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999997 555443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.16  E-value=0.0028  Score=50.05  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998743

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.15  E-value=0.0017  Score=51.43  Aligned_cols=22  Identities=41%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.15  E-value=0.0031  Score=49.67  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999873

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.15  E-value=0.0031  Score=49.29  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.13  E-value=0.0032  Score=49.81  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ..-.++|+|++|+|||||++.+.+-
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3446899999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0029  Score=49.22  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +.-.++|+|++|+|||||++.+.+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345689999999999999999985

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.12  E-value=0.0041  Score=48.93  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=21.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+.-.++|+|+.|+|||||++.+.+-.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            344578999999999999999998743

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.12  E-value=0.002  Score=54.04  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998663

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.09  E-value=0.0028  Score=50.09  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.09  E-value=0.0054  Score=53.05  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=30.2

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .+|..+.|.||+|+||||+++.++..+. .....+.+.+..
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~  107 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSE  107 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchh
Confidence            3467899999999999999999999876 333445555433

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.08  E-value=0.004  Score=51.81  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=24.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .....+.|.||+|+|||||+++++....
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4556789999999999999999998654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.08  E-value=0.0027  Score=49.17  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|.+|+|||||++.+.+-
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.07  E-value=0.0033  Score=50.17  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|++|+|||||++.+.+-.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.07  E-value=0.0036  Score=48.92  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.07  E-value=0.0035  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999853

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.07  E-value=0.0037  Score=48.39  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++.-.++++|++|+|||||++.+.+-
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34557899999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.06  E-value=0.0032  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++++|.+|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.06  E-value=0.0036  Score=49.32  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999998765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.05  E-value=0.0037  Score=50.18  Aligned_cols=26  Identities=31%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      --.++|+|.+|+|||||++.++.-..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35789999999999999999887643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.05  E-value=0.004  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.05  E-value=0.0039  Score=53.69  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .++.-+.|.||+|+|||+|+++++..+.  ...-+.+++.+
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~   81 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSD   81 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCS
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHH
Confidence            4456788999999999999999998662  22334454443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.04  E-value=0.0011  Score=59.87  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             ceeeecCCE--EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           95 QQLLQQKGC--VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        95 vs~~i~~Ge--~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +...+..|.  .+.|.||+|+|||||+++|+..+.
T Consensus        41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            333344454  489999999999999999999765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.04  E-value=0.0025  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.03  E-value=0.0018  Score=58.26  Aligned_cols=27  Identities=41%  Similarity=0.639  Sum_probs=24.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+++|+|++|+||||++..|++.+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.01  E-value=0.0016  Score=52.17  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|.+|+|||||++.|.+..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998853

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.01  E-value=0.0081  Score=48.41  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      |.+++|=|+-||||||+++.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999998775

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.00  E-value=0.0036  Score=52.59  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|||||||++.|.|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.99  E-value=0.0035  Score=49.92  Aligned_cols=22  Identities=27%  Similarity=0.370  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.99  E-value=0.0034  Score=50.76  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .-.++|+|++|+|||||++.+.+-
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.99  E-value=0.003  Score=54.63  Aligned_cols=28  Identities=29%  Similarity=0.459  Sum_probs=24.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+..+.|.||+|+|||||++.++..+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            5567899999999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.99  E-value=0.0043  Score=51.17  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.++|+|++||||||+++.|+..+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999987554

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.016  Score=52.11  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +.+..=+.|.||+|+|||+|+++|++.+..   --+.+++-++.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~---~~~~v~~~~l~  243 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKA---AFIRVNGSEFV  243 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecchhh
Confidence            445555889999999999999999997652   34566665543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.98  E-value=0.0037  Score=49.11  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +.-.++|+|++|+|||||++.+.+-
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3346899999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.97  E-value=0.0036  Score=54.55  Aligned_cols=27  Identities=37%  Similarity=0.490  Sum_probs=23.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++..+.|.||+|+||||++++|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            345689999999999999999998653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.015  Score=52.40  Aligned_cols=41  Identities=20%  Similarity=0.088  Sum_probs=31.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +++..=+.|.||+|+|||+|++++++....   --+.+++-++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~  252 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNA---TFLKLAAPQLV  252 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCC---CEEEEehhhhh
Confidence            555666889999999999999999997652   34566666654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.96  E-value=0.004  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.96  E-value=0.0037  Score=52.49  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.-+.|.||+|+||||+++.++..+.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            345688999999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.96  E-value=0.0031  Score=49.20  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .-.++|+|.+|+|||||++.+.+-
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999874

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.95  E-value=0.0022  Score=50.01  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|.+|+|||||++.+.+..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.95  E-value=0.0038  Score=52.93  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|..|||||||++.|.|.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999863

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.94  E-value=0.0042  Score=48.49  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.92  E-value=0.0038  Score=49.07  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.+.+-.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999988853

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.91  E-value=0.0037  Score=49.96  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.91  E-value=0.0025  Score=49.20  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=9.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.016  Score=51.67  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +.+..=+.|.||+|+|||+|++++++....   --+.+++-++.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f~~v~~s~l~  219 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC---KFIRVSGAELV  219 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EEEEEEGGGGS
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCC---CceEEEhHHhh
Confidence            444444789999999999999999997652   34556555543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.015  Score=52.39  Aligned_cols=41  Identities=17%  Similarity=0.125  Sum_probs=30.6

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +.+..=+.|.||+|+|||+|+++|++.+..   --+.+++-++.
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~~~~v~~s~l~  252 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA---NFIFSPASGIV  252 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehhhhc
Confidence            555566889999999999999999997652   34555555543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.88  E-value=0.0077  Score=49.82  Aligned_cols=37  Identities=22%  Similarity=0.153  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      .+..+.|.||+|+|||++++.|.........--+.++
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~   64 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN   64 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence            3456889999999999999999987642222345554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.81  E-value=0.0056  Score=53.07  Aligned_cols=28  Identities=32%  Similarity=0.442  Sum_probs=24.8

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -+.+|.++.|.||+|+|||||+..++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4778888999999999999999999763

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.81  E-value=0.0057  Score=52.40  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.-+.|.||+|+|||+|+++++..+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            445689999999999999999998654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.80  E-value=0.005  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|.+|+|||||++.|.+--
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.79  E-value=0.0012  Score=56.67  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++..+...+..|.-+.|.||+|+|||+|++.++..+.
T Consensus        35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3344444444567899999999999999999998664

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.78  E-value=0.0052  Score=48.60  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            5899999999999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.78  E-value=0.0051  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.++|+|.+|+|||||++.|.+--
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999999854

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.78  E-value=0.0088  Score=52.14  Aligned_cols=28  Identities=39%  Similarity=0.398  Sum_probs=24.4

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.-+++|+|++|+|||||+..|++.+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566899999999999999999988764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.77  E-value=0.005  Score=51.67  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.|.|.-
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.77  E-value=0.0059  Score=53.20  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+.-+.|.||+|+|||||+++|+..+.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4456789999999999999999998654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0059  Score=49.03  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.73  E-value=0.0064  Score=52.08  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.-+.|.||+|+|||+|+++|+..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999988654

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.73  E-value=0.0063  Score=48.81  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      -+++|.|+.||||||+.+.|+..+..+     ++|++
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~   38 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKE   38 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHH
Confidence            489999999999999999999877532     56643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.73  E-value=0.0057  Score=48.49  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=20.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +.-.++|+|.+|+|||||++.+.+-
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3446899999999999999888753

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.71  E-value=0.0082  Score=52.81  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      -+++|.++.|.|++|+|||||+..++..........++++.+
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            378999999999999999999987765443133344566543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.69  E-value=0.0064  Score=48.70  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|.+|+|||||++.+.+-
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.69  E-value=0.0051  Score=50.01  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++...+.+.||+|+||||++.+|+..+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            55555789999999999999999998764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.68  E-value=0.0065  Score=54.85  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      -+.|+||+|+||||++++|+..+..   ..+.++.-.+
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~~---~~~~v~~~~~   86 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF   86 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGG
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC---Cceeecchhh
Confidence            4789999999999999999998762   3455554443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.67  E-value=0.0056  Score=48.06  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=21.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .+.-.++|+|++|+|||||++.+.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            3445699999999999999999965

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.028  Score=50.47  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +++..=+.|.||+|+|||+|+++|++....   --+.+++-++.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~~s~l~  253 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIVGSELI  253 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEESGGGC
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHHhCC---CEEEEEHHHhh
Confidence            445555899999999999999999997652   34566666654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.66  E-value=0.0065  Score=54.64  Aligned_cols=49  Identities=18%  Similarity=0.124  Sum_probs=35.0

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEEEcC
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDG  138 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~~~g  138 (234)
                      ..|+.+.--+++|+++.|.|++|+|||||+..++...... +...+++..
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            3455555458999999999999999999999888755311 223455543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.66  E-value=0.0065  Score=50.88  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++++|.+|+|||||++.|.|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5789999999999999999998653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.65  E-value=0.0066  Score=52.60  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+..+.|.||+|+|||||++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999876

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.64  E-value=0.006  Score=53.31  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=22.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..+.|.||+|+||||+++.|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            44688999999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.64  E-value=0.0064  Score=48.16  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|++|+|||||++.+.+-
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.62  E-value=0.0074  Score=51.66  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+.|.||+|+||||+++.++..+.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999988654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.61  E-value=0.0082  Score=51.99  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHH-Hhhccc-CCccEEEEcCcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACAL-SQALHW-RGKLTYILDGDN  140 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l-~gll~~-p~~G~i~~~g~~  140 (234)
                      +++| ++-|.||+|||||||+-.+ +..... +..-.++++++.
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            6789 8999999999999995544 443331 133456777653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.61  E-value=0.023  Score=51.55  Aligned_cols=40  Identities=20%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +.+..=+.|.||+|+|||+|+++|++.+..   --+.+.+-++
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L  279 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSEL  279 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGG
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHh
Confidence            555666889999999999999999997652   2345555444

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.60  E-value=0.011  Score=53.15  Aligned_cols=41  Identities=27%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      ++.-+.|.||+|+|||||+++++..+. ...--+.+++-++.
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~~  102 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEVY  102 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGGC
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHHH
Confidence            455688999999999999999999875 33344556655543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.60  E-value=0.0025  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=4.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.++|+|++|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999998875

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.59  E-value=0.0064  Score=49.09  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999863

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.56  E-value=0.0098  Score=48.73  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=21.4

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+|.++.+.|+.|+||||++..++..+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999776555444

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.56  E-value=0.0035  Score=47.23  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .+.-+.|.||+|+|||++++.|...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHh
Confidence            3455889999999999999998763

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.55  E-value=0.0067  Score=52.27  Aligned_cols=39  Identities=31%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             ecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        85 ~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .+.....++..-+.+ .|.-+.|.|+||+||||++-.+..
T Consensus       131 ~la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          131 QFATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             HTCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             HhhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            334445666655555 577899999999999999877643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.54  E-value=0.0068  Score=52.87  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.-+.|.||+|+|||||+++++..+.
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            344578999999999999999998664

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.49  E-value=0.0067  Score=48.12  Aligned_cols=20  Identities=50%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      +.|+|++||||||++..++.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            67999999999999998874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.49  E-value=0.0026  Score=50.75  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998853

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.41  E-value=0.0046  Score=56.68  Aligned_cols=41  Identities=22%  Similarity=0.216  Sum_probs=32.2

Q ss_pred             CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           87 NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        87 ~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      |...+++.+...+..|.-+.|.||+|+|||+|++.|+..+.
T Consensus        26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            34445555555666778899999999999999999998764

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.39  E-value=0.0096  Score=48.37  Aligned_cols=21  Identities=43%  Similarity=0.494  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      -++|+|..||||||+++.+..
T Consensus        11 ~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999986

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.36  E-value=0.0029  Score=54.67  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.|.||.|+||||+++.++..+.
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	4e-50
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	3e-28
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	4e-21
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	2e-20
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	5e-20
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	4e-19
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	1e-18
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	3e-18
d1g8fa3	122	c.37.1.15 (A:390-511) ATP sulfurylase C-terminal d	2e-16
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	5e-13
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	5e-09
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	4e-08
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	2e-07
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	3e-06
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-06
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	5e-05
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	9e-05
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	1e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	2e-04
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	2e-04
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	3e-04
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	3e-04
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	3e-04
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	5e-04
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	7e-04
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	9e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.001
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.001
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	0.001
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	0.002
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	0.002
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	0.002
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.002
d1p6xa_	333	c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus	0.003
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	0.003

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  160 bits (406), Expect = 4e-50
 Identities = 87/162 (53%), Positives = 105/162 (64%), Gaps = 9/162 (5%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L   L   R    Y LD
Sbjct: 1   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 60

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 61  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 120

Query: 198 EG--------DFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231
                      F+EV++DVP++V E RDPKGLYK AREG +K
Sbjct: 121 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK 162

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-28
 Identities = 74/149 (49%), Positives = 96/149 (64%), Gaps = 6/149 (4%)

Query: 89  VDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144
           V +  R Q++      +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R G
Sbjct: 2   VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61

Query: 145 LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEV 204
           LN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R +         
Sbjct: 62  LNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFF 121

Query: 205 FMDV--PLQVCEARDPKGLYKLAREGKVK 231
            + V  PL VCE RD KGLYK AR G++K
Sbjct: 122 EVFVDAPLHVCEQRDVKGLYKKARAGEIK 150

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 85.2 bits (209), Expect = 4e-21
 Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDLSFKAEDRV 157
             +G  I++TG   SGK  +A AL   L+ +G  +   L GD  RH L+ +L F  EDR 
Sbjct: 3   ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEAR 216
            NI+RI  VA     AG   IA  I+PY + R   R  +   G F  V +  PL+ CE  
Sbjct: 63  TNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQS 122

Query: 217 DPKGLYKLAREGKVK 231
           D +G+Y  AR G++K
Sbjct: 123 DKRGIYAAARRGEIK 137

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (205), Expect = 2e-20
 Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 12/124 (9%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
            +I + GL   GK+ ++  L++ L++ G  T   +    R  + +          +N   
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62

Query: 163 IGEVAK------------LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPL 210
           +    +            L  + G + +    +  R+ R    +   +  +   F++   
Sbjct: 63  LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 122

Query: 211 QVCE 214
              E
Sbjct: 123 VDPE 126

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 82.0 bits (201), Expect = 5e-20
 Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 12/135 (8%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLT----------YILDGDNCRHGLNRDLSFKA 153
           +I + G S +GKS +   L   L                   +         + D     
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 154 EDRVENIRR-IGEVAKLFADAGVICI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211
                 +     E     A AG   I   +       ++  RS + + D + V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 212 VCEARDPKGLYKLAR 226
           V E R+     ++A 
Sbjct: 125 VAEGRETARGDRVAG 139

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 79.2 bits (194), Expect = 4e-19
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAED 155
            G ++ ++G  GSGKST+A AL+               D+    +        L    + 
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVP---KVHFHSDDLWGYIKHGRIDPWLPQSHQQ 59

Query: 156 RVENIRRIGEVAKLFADAGVICIAC-LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214
               ++   +VA  +A  G   I   ++ P         +       +       ++ C 
Sbjct: 60  NRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL 119

Query: 215 ARDPKGLY 222
            R    L 
Sbjct: 120 DRGGDSLS 127

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 78.1 bits (191), Expect = 1e-18
 Identities = 15/128 (11%), Positives = 36/128 (28%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           ++     SG+GK+TL   L  AL  RG    ++   +    +++      E R     + 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223
              ++                 +       +   +   +E F    +           ++
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 224 LAREGKVK 231
                  +
Sbjct: 124 PEELVIDR 131

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 77.4 bits (189), Expect = 3e-18
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
                +  + G+SGSGKS +A  ++  LH        L        +        +DR  
Sbjct: 3   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            ++ + + A        + +    +  +  RD  R   P  +   +++     V E+R
Sbjct: 63  WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVIESR 118

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (173), Expect = 2e-16
 Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 46/136 (33%)

Query: 100 QKGCVIWITGLSGSGKSTLACAL-SQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRV 157
           ++G  I +       +  L+ AL S  L + G   Y I + +N                 
Sbjct: 4   KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN----------------- 46

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217
                +  + + F  +G                           + +             
Sbjct: 47  --KTELLSLIQDFIGSG-------------------------SGLIIPDQWEDDKDSVVG 79

Query: 218 PKGLYKLAREGKVKGT 233
            + +Y L         
Sbjct: 80  KQNVYLLDTSSSADIQ 95

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 63.1 bits (152), Expect = 5e-13
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE---NI 160
           +  ITG +G GKST    L+  L      +  ++GD   H +        E         
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVVGGYRPPWESDELLALTW 59

Query: 161 RRIGEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217
           + I ++   F  A    V+                ++ + + +   + +    +    RD
Sbjct: 60  KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD 119

Query: 218 PK 219
             
Sbjct: 120 AL 121

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (122), Expect = 5e-09
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164
           I++ G  G+GKST+   L+Q L+      +             D+ +  +   E   R  
Sbjct: 5   IFLVGPMGAGKSTIGRQLAQQLNME----FYDSDQEIEKRTGADVGWVFDLEGEEGFRDR 60

Query: 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224
           E   +        I              R+ L     + V+++  ++   AR  +   + 
Sbjct: 61  EEKVINELTEKQGIVLATGGGSVKSRETRNRLSA-RGVVVYLETTIEKQLARTQRDKKRP 119

Query: 225 AREG 228
               
Sbjct: 120 LLHV 123

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 14/126 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF--------KAED 155
           +I   G  GSGKST A    +    +    Y ++ D+ R  +              K   
Sbjct: 4   IILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDA--CRSMLPEGDFIEVFMDVPLQVC 213
                    +      D+    I    +   + R A    +            DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARDPK 219
             R+ K
Sbjct: 120 VKRNSK 125

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCRHGLNRDLSFKAEDR 156
           Q KG  I ITG  G+GK+++A  ++  L     L    ++  ++     + +L     + 
Sbjct: 2   QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 61

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            +  R +  +  +    G   +         D  +          + V +    +V   R
Sbjct: 62  KDEDRLLDFMEPIMVSRGNHVV---------DYHSSELFPERWFHMVVVLHTSTEVLFER 112

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENI 160
           V+ +TG+ G G +T +      L   G    ++  G         +      D++  +
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKM 60

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAE-------- 154
           +  +TG+ G GKST+   + + L  +G    I++ GD       +    K          
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 155 -----DRVENIRRIGEVAKLFADAGVICI 178
                 +++  + I E A+   +  +   
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFID 91

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 13/125 (10%), Positives = 26/125 (20%), Gaps = 19/125 (15%)

Query: 93  DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152
           +   LL     V+   G  G+GKST       +  +     ++                 
Sbjct: 5   ESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGY----VHVNRDTLGSWQRCVSSCQA 60

Query: 153 AEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212
           A               L     V+          + R    +               ++ 
Sbjct: 61  A---------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 105

Query: 213 CEARD 217
               +
Sbjct: 106 ARHNN 110

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 16/112 (14%), Positives = 27/112 (24%), Gaps = 12/112 (10%)

Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164
           I +TG  G GK+TL   L+     +      ++  +          +  E     +    
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDEDR 61

Query: 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            V         +           D   C         I   +     V   R
Sbjct: 62  VVD-------ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYER 106

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 96  QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           Q LQ     ++ TG  G GK++++CA +  L  +GK   ++  D
Sbjct: 2   QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           V+ I GLS SGK+TLA  LSQ L  +G    +   D+              +R +     
Sbjct: 24  VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV-----------ERAKRYHTG 72

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
            E    +              +R+ + + +  LP  D                D 
Sbjct: 73  NEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDM 127

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 94  RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
              + + +  +I + G  G GK+T+A A++  L   G   ++   D   H
Sbjct: 12  VDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH 61

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----CRHGLNRDLSFKAEDRVEN 159
           +I +TG SG+G ST+     Q     G     ++GD      R  +  +L  +       
Sbjct: 6   IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDAT 65

Query: 160 I 160
            
Sbjct: 66  F 66

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 104 VIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           +I ++G + SGKS++   + Q L      +R K   IL  D+    L  +   KA     
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 63

Query: 159 NIRRIG 164
           N     
Sbjct: 64  NFDHPD 69

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 12/40 (30%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
           V  + G   SGK+TL      A    G     +       
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGG 42

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
           +I I  G  G+GK+T+   LS AL  RG+    +DGD     L+  L     D   +   
Sbjct: 4   IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVL 63

Query: 163 IGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
            GE     A          + P   D +      P 
Sbjct: 64  AGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPR 99

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
           I   G  GSGKSTLA AL++ L   
Sbjct: 3   IVFIGFMGSGKSTLARALAKDLDLV 27

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151
           +   + I G  GSGK+T      +  +    LT  ++     +G+N     
Sbjct: 8   QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM 58

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR 147
            +++TG  G GK+TL    S+ L   G        +  R G  R
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRR 46

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
           I++ G  G G +T+   L++AL + 
Sbjct: 5   IFMVGARGCGMTTVGRELARALGYE 29

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166
           I G +GSGKS +  A+S  L  R          + R  + +DL ++     EN       
Sbjct: 30  IIGPNGSGKSNMMDAISFVLGVRSN--------HLRSNILKDLIYRGVLNDENSDDYDNE 81

Query: 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209
               ++     +        K  +  R +   GD         
Sbjct: 82  GAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKT 124

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
            + I G  G GKST    L+  LH  GK   ++  D
Sbjct: 3   QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL 149
            I +  G  G+GK+T+   L  AL   G    I+D D     L   L
Sbjct: 3   TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELIL 49

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCRHGLNRDLSFKAEDRV 157
           +   I I GL G+GK+T    + + L   G    +     G        R L    +   
Sbjct: 1   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 60

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKD 188
           + +        +F  A V  +  +I P   +
Sbjct: 61  DEVITDKAEVLMFYAARVQLVETVIKPALAN 91

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
                I++ G+ G GKST    ++ A        Y 
Sbjct: 4   VTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
             + GL GSGKST+   L++AL   
Sbjct: 4   AVLVGLPGSGKSTIGRRLAKALGVG 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.93
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.93
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.92
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.92
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.91
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.91
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.9
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.88
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.87
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.85
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.79
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.76
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.69
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.79
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.78
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.54
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.49
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.48
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.39
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.38
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.16
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.99
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.95
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.94
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.87
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.84
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.83
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.76
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.74
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.73
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.69
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.68
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.68
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.66
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.61
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.59
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.57
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.55
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.52
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.48
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.47
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.45
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.44
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.39
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.37
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.36
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.36
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.35
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.31
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.26
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.22
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.21
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.19
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.17
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.17
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.16
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.12
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.11
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.1
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.1
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.08
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.08
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.07
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.07
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.07
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.02
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.0
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.98
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.98
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.97
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.97
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.97
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.96
d1okkd2	207	GTPase domain of the signal recognition particle r	96.96
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.95
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.94
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.93
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.89
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.88
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.87
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.86
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.83
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.79
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.78
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.77
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.77
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.77
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.76
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.75
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.72
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.71
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.69
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.69
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.67
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.67
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.66
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.65
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.64
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.63
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.59
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.57
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.56
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.56
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.55
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.54
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.51
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.51
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.51
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.5
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.49
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.47
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.46
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.45
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.4
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.38
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.38
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.37
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.37
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.35
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.33
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.3
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.27
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.26
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.22
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.18
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.17
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.15
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.15
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.14
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.14
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.1
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.1
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.05
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.04
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.03
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.02
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.94
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.93
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.91
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.87
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.86
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.85
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.84
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.83
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.8
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.8
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.78
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.78
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.7
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.64
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.63
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.61
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.6
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.57
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.54
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.53
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.53
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.5
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.49
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.37
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.33
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.32
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.3
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.27
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.24
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.12
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.12
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.93
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.9
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.84
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.8
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.78
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.75
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.73
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.66
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.65
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.56
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.44
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.3
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.16
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.12
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.09
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.09
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.68
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.58
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.55
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.53
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.14
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.12
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.94
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.8
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.72
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.52
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.35
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.2
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.11
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.09
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.07
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.0
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.93
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.85
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.83
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.51
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.44
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.39
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	91.17
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.15
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.09
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.81
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.76
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.49
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.28
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.44
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.25
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	89.06
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.46
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	87.57
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.31
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.27
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.0
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.03
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.39
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.76
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.36
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	81.18
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.13

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=4.1e-27  Score=195.43  Aligned_cols=146  Identities=17%  Similarity=0.127  Sum_probs=108.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      .++++|++++||+..+|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.....  +.+++.+
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCCEEEEcceecccCCcccceEEEEe
Confidence            3789999999999999999999999999999999999999999999999998 999999999999864221  1122222


Q ss_pred             hhHH-----------------------HHHHHHHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEE
Q 026725          154 EDRV-----------------------ENIRRIGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVF  205 (234)
Q Consensus       154 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~  205 (234)
                      ++..                       +...   .+..++...++.     ....++.+.+++..++++++..+.+  ++
T Consensus        85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~i--Ll  159 (239)
T d1v43a3          85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDK---RVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LL  159 (239)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHH---HHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EE
T ss_pred             echhhcccchHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCc--ee
Confidence            2210                       1111   122222222221     1123456778888999999999999  89


Q ss_pred             EeCChhhhhhcchhhHHHHHHc
Q 026725          206 MDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       206 ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +|||+..|+......+++.+++
T Consensus       160 lDEPts~LD~~~~~~i~~ll~~  181 (239)
T d1v43a3         160 MDEPLSNLDAKLRVAMRAEIKK  181 (239)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHH
T ss_pred             ecCCcccCCHHHHHHHHHHHHH
Confidence            9999999988777777766553

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=6.2e-27  Score=193.50  Aligned_cols=139  Identities=16%  Similarity=0.180  Sum_probs=105.6

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      +++++|+++.|+.    +.+|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|+++|+++..       +
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-p~sG~I~~~g~~i~~-------~   72 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTND-------L   72 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTT-------C
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-CCcceeEECCEEcCc-------C
Confidence            4789999999963    358999999999999999999999999999999999998 999999999999874       3


Q ss_pred             ChhhHHHHHHHHHHHHHHHHhcCceE----------------------------------------------EEecCccc
Q 026725          152 KAEDRVENIRRIGEVAKLFADAGVIC----------------------------------------------IACLISPY  185 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~  185 (234)
                      ++.++...++.  .++++||++.+++                                              ...++.+.
T Consensus        73 ~~~~~~~~r~~--~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGq  150 (230)
T d1l2ta_          73 DDDELTKIRRD--KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ  150 (230)
T ss_dssp             CHHHHHHHHHH--HEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred             Chhhcchhhcc--eEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHH
Confidence            43333322222  3333444332211                                              01123445


Q ss_pred             HHHHHHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       186 ~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +++..+|++++..+.+  +++|||+..|+......+++.++
T Consensus       151 kQRvaIAraL~~~P~l--LllDEPTs~LD~~~~~~i~~~l~  189 (230)
T d1l2ta_         151 QQRVAIARALANNPPI--ILADQPTGALDSKTGEKIMQLLK  189 (230)
T ss_dssp             HHHHHHHHHHTTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcCCCE--EEecCCccccCHHHHHHHHHHHH
Confidence            6677889999999999  89999999998888877777665

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.1e-27  Score=194.72  Aligned_cols=147  Identities=16%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~~  154 (234)
                      ++++|++++|++.++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.....  +.+++.++
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCCEEEECCEECCCCchhhceeeeecc
Confidence            478999999999999999999999999999999999999999999999998 999999999999864221  11222111


Q ss_pred             hH--------HHHHHH------------HHHHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCC
Q 026725          155 DR--------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVP  209 (234)
Q Consensus       155 ~~--------~~~~~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P  209 (234)
                      +.        .+++..            -..+..++...++.     ....++.+.+++..++++++..+.+  +++|||
T Consensus        80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i--lllDEP  157 (232)
T d2awna2          80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEP  157 (232)
T ss_dssp             SCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSE--EEEEST
T ss_pred             ccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            10        000000            00122222322221     1233456677778899999999999  899999


Q ss_pred             hhhhhhcchhhHHHHHH
Q 026725          210 LQVCEARDPKGLYKLAR  226 (234)
Q Consensus       210 ~~~l~~R~~~~l~~~~~  226 (234)
                      +..|+......++..++
T Consensus       158 ts~LD~~~~~~i~~~l~  174 (232)
T d2awna2         158 LSNLDAALRVQMRIEIS  174 (232)
T ss_dssp             TTTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99998877777776654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.93  E-value=6.6e-27  Score=192.99  Aligned_cols=147  Identities=15%  Similarity=0.158  Sum_probs=105.7

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCCh
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKA  153 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~  153 (234)
                      +++++|++++|++ .+|+|+||+|++||+++|+||||||||||+|+|+|++. |++|+|+++|+++.....  +.+++..
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-p~sG~I~~~G~~i~~~~~~~r~ig~v~   78 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVY   78 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCCEEEEccEeccccchhHhcceeec
Confidence            4789999999987 48999999999999999999999999999999999998 999999999999864211  1111111


Q ss_pred             hh--------HHHHHHHHH---------HHHHHHHhcCce-----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          154 ED--------RVENIRRIG---------EVAKLFADAGVI-----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       154 ~~--------~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      ++        ..+++....         .+...+...++.     ....++.+.+++..++++++..+.+  +++|||+.
T Consensus        79 Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~i--LllDEPts  156 (229)
T d3d31a2          79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLS  156 (229)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSST
T ss_pred             cccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCc--eeecCCCc
Confidence            11        111111110         111222222221     1122345667788899999999999  89999999


Q ss_pred             hhhhcchhhHHHHHH
Q 026725          212 VCEARDPKGLYKLAR  226 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~  226 (234)
                      .++......+++.++
T Consensus       157 ~LD~~~~~~i~~~l~  171 (229)
T d3d31a2         157 ALDPRTQENAREMLS  171 (229)
T ss_dssp             TSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            998888777777664

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.92  E-value=1.1e-25  Score=187.51  Aligned_cols=151  Identities=13%  Similarity=0.159  Sum_probs=110.3

Q ss_pred             cccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----c
Q 026725           74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----D  148 (234)
Q Consensus        74 ~~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~  148 (234)
                      ..+++++|++++||+..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++......     .
T Consensus         4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~r~g   82 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEecccccccccHHHHHHhc
Confidence            358999999999999999999999999999999999999999999999999998 9999999999998642110     0


Q ss_pred             CCC-----------ChhhHH-----------HHHHHHHHHHHH---HHhcCceEEEecCcccHHHHHHHHHhCCCCCceE
Q 026725          149 LSF-----------KAEDRV-----------ENIRRIGEVAKL---FADAGVICIACLISPYRKDRDACRSMLPEGDFIE  203 (234)
Q Consensus       149 ~~~-----------~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~  203 (234)
                      +++           +..+..           ...+.+..+...   +.+........++.+.++...++++++..+.+  
T Consensus        83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l--  160 (240)
T d1ji0a_          83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--  160 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--
T ss_pred             ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--
Confidence            011           111100           011111111111   11122222234566777888999999999999  


Q ss_pred             EEEeCChhhhhhcchhhHHHHHHc
Q 026725          204 VFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       204 ~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++|||+..++......+++.+++
T Consensus       161 LllDEPt~gLD~~~~~~i~~~i~~  184 (240)
T d1ji0a_         161 LMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             eeecCCCcCCCHHHHHHHHHHHHH
Confidence            899999999988888888777653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.3e-26  Score=192.51  Aligned_cols=138  Identities=15%  Similarity=0.237  Sum_probs=105.7

Q ss_pred             cceeeceeeecCC----ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCC
Q 026725           76 VAKSTNILWHKNS----VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (234)
Q Consensus        76 ~~~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~  151 (234)
                      +++++|+++.|+.    .++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..       +
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-p~sG~I~~~g~~i~~-------~   72 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTT-------L   72 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-CSEEEEEETTEEECT-------T
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-ccCCceEEcCeEeee-------C
Confidence            4789999999964    368999999999999999999999999999999999998 999999999999864       3


Q ss_pred             ChhhHHHHHHHHHHHHHHHHhcCceEE------------------------------------------EecCcccHHHH
Q 026725          152 KAEDRVENIRRIGEVAKLFADAGVICI------------------------------------------ACLISPYRKDR  189 (234)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~  189 (234)
                      +..++...++   .++++||++++++.                                          ..++.+.+++.
T Consensus        73 ~~~~~~~~rr---~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRv  149 (240)
T d3dhwc1          73 SESELTKARR---QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV  149 (240)
T ss_dssp             CHHHHHHHHH---HEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHH
T ss_pred             Chhhhhhhhc---cccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence            3333322221   34444444433211                                          11234456667


Q ss_pred             HHHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       190 ~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      .+|++++..+.+  +++|||+..|+......+++.++
T Consensus       150 aiAraL~~~P~l--LllDEPt~~LD~~~~~~i~~~l~  184 (240)
T d3dhwc1         150 AIARALASNPKV--LLCDEATSALDPATTRSILELLK  184 (240)
T ss_dssp             HHHHHHHTCCSE--EEEESGGGSSCHHHHHHHHHHHH
T ss_pred             HHhhhhccCCCe--EEeccccccCCHHHhhHHHHHHH
Confidence            888999999998  89999999998888777777665

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=2.1e-26  Score=193.65  Aligned_cols=148  Identities=20%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccccc-------
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------  148 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~-------  148 (234)
                      .++++|++++||+.++|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++......+       
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-CCCCCEEECCEEeccCCccchhccccc
Confidence            4789999999999999999999999999999999999999999999999998 99999999999985321100       


Q ss_pred             ----------CCCChh--------hHHHHHHH-------------HHHHHHHHHhcCceE------EEecCcccHHHHHH
Q 026725          149 ----------LSFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC------IACLISPYRKDRDA  191 (234)
Q Consensus       149 ----------~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  191 (234)
                                +++..+        ...+++..             ...+...+...++..      ...++.+.+++..+
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i  160 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  160 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence                      000000        00000000             001112222222211      12234556677788


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +++++..+.+  +++|||+..|+......+++.++
T Consensus       161 AraL~~~P~l--lilDEPT~gLD~~~~~~i~~ll~  193 (258)
T d1b0ua_         161 ARALAMEPDV--LLFDEPTSALDPELVGEVLRIMQ  193 (258)
T ss_dssp             HHHHHTCCSE--EEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCE--EEeccccccCCHHHHHHHHHhhh
Confidence            9999999999  89999999998888877777665

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.92  E-value=3.8e-27  Score=195.79  Aligned_cols=148  Identities=16%  Similarity=0.120  Sum_probs=107.9

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc--------cc
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--------NR  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~--------~~  147 (234)
                      .++++|+++.||++.+++|+||++++||+++|+||||||||||+|+|+|++. |++|+|+++|+++....        .+
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-p~sG~I~~~g~~i~~~~~~~~~~~~~r   81 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDR   81 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCCEEEECCEEecccchhhhcccccc
Confidence            5789999999999999999999999999999999999999999999999998 99999999998874321        11


Q ss_pred             cCCCChhh--------HHHHHHHH------------HHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCce
Q 026725          148 DLSFKAED--------RVENIRRI------------GEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFI  202 (234)
Q Consensus       148 ~~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~  202 (234)
                      .+++..++        ..+++...            ..+..++...++     .....++.+.+++..+|++++..+.+ 
T Consensus        82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~i-  160 (240)
T d1g2912          82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV-  160 (240)
T ss_dssp             SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE-
T ss_pred             cceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            11121111        01111100            012222222222     11233456677888999999999999 


Q ss_pred             EEEEeCChhhhhhcchhhHHHHHH
Q 026725          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       203 ~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                       +++|||+..|+......+++.++
T Consensus       161 -LllDEPt~~LD~~~~~~i~~~l~  183 (240)
T d1g2912         161 -FLMDEPLSNLDAKLRVRMRAELK  183 (240)
T ss_dssp             -EEEECTTTTSCHHHHHHHHHHHH
T ss_pred             -EEecCCCcccCHHHHHHHHHHHH
Confidence             89999999998888877777665

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=1.8e-26  Score=191.69  Aligned_cols=145  Identities=15%  Similarity=0.127  Sum_probs=107.1

Q ss_pred             cceeeceeeec--CCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------c
Q 026725           76 VAKSTNILWHK--NSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------N  146 (234)
Q Consensus        76 ~~~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------~  146 (234)
                      .++++|+++.|  +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++....       .
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-CCCceEEECCEEeecCchhhcchhh
Confidence            47889999999  56789999999999999999999999999999999999998 99999999999875311       1


Q ss_pred             ccCCCChh-----------hH------------HHHHHHHHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCC
Q 026725          147 RDLSFKAE-----------DR------------VENIRRIGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       147 ~~~~~~~~-----------~~------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~  198 (234)
                      +.+++..+           +-            .+...   .+..++...++..     ...++.+.+++..++++++..
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~---~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~  158 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK---RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH---HHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHH---HHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhc
Confidence            11111111           10            01111   2223333333321     123455667888999999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      +.+  +++|||+..++......+++.++
T Consensus       159 P~l--lllDEPt~~LD~~~~~~i~~~i~  184 (242)
T d1oxxk2         159 PSL--LLLDEPFSNLDARMRDSARALVK  184 (242)
T ss_dssp             CSE--EEEESTTTTSCGGGHHHHHHHHH
T ss_pred             ccc--eeecCCccCCCHHHHHHHHHHHH
Confidence            999  89999999998888887777654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=1.2e-24  Score=182.63  Aligned_cols=150  Identities=17%  Similarity=0.185  Sum_probs=109.1

Q ss_pred             ccceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cC
Q 026725           75 TVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DL  149 (234)
Q Consensus        75 ~~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~  149 (234)
                      .+++++|++++||+.++|+||||++++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++......     .+
T Consensus         3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~gi   81 (254)
T d1g6ha_           3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGI   81 (254)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-CCCcEEEECCEeccchhHHHHHHhcC
Confidence            37899999999999999999999999999999999999999999999999998 9999999999998642211     01


Q ss_pred             CCChhhH--------HHHHH-------------------------HHHHHHHHHHhcCc-----eEEEecCcccHHHHHH
Q 026725          150 SFKAEDR--------VENIR-------------------------RIGEVAKLFADAGV-----ICIACLISPYRKDRDA  191 (234)
Q Consensus       150 ~~~~~~~--------~~~~~-------------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  191 (234)
                      ++.+++.        .+++.                         ....+..++...++     .....++.+.++....
T Consensus        82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~i  161 (254)
T d1g6ha_          82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI  161 (254)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHH
Confidence            1111111        01110                         00011112222221     1223345566777889


Q ss_pred             HHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       192 ~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +++++..+.+  +++|||+..++......+|+.+++
T Consensus       162 AraL~~~P~l--lilDEPt~gLD~~~~~~i~~~i~~  195 (254)
T d1g6ha_         162 GRALMTNPKM--IVMDEPIAGVAPGLAHDIFNHVLE  195 (254)
T ss_dssp             HHHHHTCCSE--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCc--hhhcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999  899999999988888888877753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.91  E-value=1.2e-25  Score=187.34  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=106.0

Q ss_pred             cceeeceeeecC-CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccCC
Q 026725           76 VAKSTNILWHKN-SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDLS  150 (234)
Q Consensus        76 ~~~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~~  150 (234)
                      +++++||+|+|+ +..+|+|+||++++||+++|+||||||||||+++|+|++. |++|+|+++|+++.....    ..++
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-CCCCEEEECCEEeccccHHHHHhheE
Confidence            478999999995 4679999999999999999999999999999999999998 999999999998864211    1122


Q ss_pred             CChhh-------HHHH-------------HHHHHHHHHHHHhcC-----c-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026725          151 FKAED-------RVEN-------------IRRIGEVAKLFADAG-----V-ICI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       151 ~~~~~-------~~~~-------------~~~~~~~~~~~~~~~-----~-~~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      +.+++       .+++             ...............     . ..+    ..++.+.+++...|++++..+.
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            22221       1111             111001111000000     0 111    1245667788899999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.++......+++.+++
T Consensus       160 i--lilDEpts~LD~~~~~~i~~~l~~  184 (242)
T d1mv5a_         160 I--LMLDEATASLDSESESMVQKALDS  184 (242)
T ss_dssp             E--EEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             E--EEecCCccccCHHHHHHHHHHHHH
Confidence            8  899999999998888777777654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=4.2e-25  Score=183.66  Aligned_cols=148  Identities=14%  Similarity=0.175  Sum_probs=108.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc---cccCCCCh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~---~~~~~~~~  153 (234)
                      +.++|++++|+++++|+|+||++++||+++|+||||||||||+++|+|++. |++|+|.++|+++....   ...+++.+
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-p~~G~i~i~G~~i~~~~~~~~~~i~~vp   81 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLP   81 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECcEecccChHHHHhhEeEee
Confidence            678999999999999999999999999999999999999999999999998 99999999999875421   01122222


Q ss_pred             hh--------HHHHHHHHH------------HHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCCCCCceEEEEeC
Q 026725          154 ED--------RVENIRRIG------------EVAKLFADAGV-----ICIACLISPYRKDRDACRSMLPEGDFIEVFMDV  208 (234)
Q Consensus       154 ~~--------~~~~~~~~~------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~  208 (234)
                      ++        ..++++...            .+.......++     .....++.+.++....+++++..+.+  +++||
T Consensus        82 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i--llLDE  159 (238)
T d1vpla_          82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AILDE  159 (238)
T ss_dssp             TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEEES
T ss_pred             eccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCE--EEecC
Confidence            11        112221111            01111111221     12233455667788899999999999  89999


Q ss_pred             ChhhhhhcchhhHHHHHHc
Q 026725          209 PLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       209 P~~~l~~R~~~~l~~~~~~  227 (234)
                      |+..++......+++.+++
T Consensus       160 Pt~gLD~~~~~~i~~~i~~  178 (238)
T d1vpla_         160 PTSGLDVLNAREVRKILKQ  178 (238)
T ss_dssp             TTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999988888887777653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-24  Score=182.67  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             cceeeceeeecCCc---cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------
Q 026725           76 VAKSTNILWHKNSV---DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------  146 (234)
Q Consensus        76 ~~~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------  146 (234)
                      .++++||+++|++.   .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.....      
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~   89 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLPQYEHRYLHRQ   89 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCcCEEEECCEecchhhhHHHHHH
Confidence            58999999999653   58999999999999999999999999999999999998 999999999998864210      


Q ss_pred             -----cc-------------CCCChhh-HHHHHHHHH--HHHHHHHhc--Cce-EE----EecCcccHHHHHHHHHhCCC
Q 026725          147 -----RD-------------LSFKAED-RVENIRRIG--EVAKLFADA--GVI-CI----ACLISPYRKDRDACRSMLPE  198 (234)
Q Consensus       147 -----~~-------------~~~~~~~-~~~~~~~~~--~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~ll~~  198 (234)
                           .+             ++..... .........  .........  +.. .+    ..++.+.+++..+|++++..
T Consensus        90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~  169 (251)
T d1jj7a_          90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK  169 (251)
T ss_dssp             EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred             hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence                 00             1111000 000000000  000111111  110 01    12455667888999999999


Q ss_pred             CCceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       199 ~~l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +.+  +++|||++.|+......+++.+++
T Consensus       170 p~i--lilDEpTs~LD~~~~~~i~~~l~~  196 (251)
T d1jj7a_         170 PCV--LILDDATSALDANSQLQVEQLLYE  196 (251)
T ss_dssp             CSE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             CcE--EEecCcCcccChhhHHHHHHHHHH
Confidence            999  899999999988888888887754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=8.9e-25  Score=181.91  Aligned_cols=148  Identities=19%  Similarity=0.204  Sum_probs=102.9

Q ss_pred             ceeeceeeecC--CccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----cCC
Q 026725           77 AKSTNILWHKN--SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----DLS  150 (234)
Q Consensus        77 ~~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----~~~  150 (234)
                      ++++|++++|+  ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++......    .++
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-CCCCEEEECCEEecccchhhhhceEE
Confidence            57899999994  4568999999999999999999999999999999999998 9999999999998641100    000


Q ss_pred             CChhh-------HH------------HHHHHHHHHH---HHHHhcC--ce-EE----EecCcccHHHHHHHHHhCCCCCc
Q 026725          151 FKAED-------RV------------ENIRRIGEVA---KLFADAG--VI-CI----ACLISPYRKDRDACRSMLPEGDF  201 (234)
Q Consensus       151 ~~~~~-------~~------------~~~~~~~~~~---~~~~~~~--~~-~~----~~~~~~~~~~~~~~~~ll~~~~l  201 (234)
                      +.+++       .+            +.+.......   .......  .. .+    ..++.+.+++..+||+++..+.+
T Consensus        81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence            00000       00            0000000111   1111100  00 00    12345667788899999999999


Q ss_pred             eEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          202 IEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       202 ~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                        +++|||++.|+......+++.+++
T Consensus       161 --lilDEpts~LD~~~~~~i~~~l~~  184 (241)
T d2pmka1         161 --LIFDEATSALDYESEHVIMRNMHK  184 (241)
T ss_dssp             --EEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             --hhhhCCccccCHHHHHHHHHHHHH
Confidence              899999999988888888877764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=4e-23  Score=167.47  Aligned_cols=147  Identities=16%  Similarity=0.203  Sum_probs=104.6

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc------ccC
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN------RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~------~~~  149 (234)
                      .++++|+++.|+ .++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....      ...
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-p~~G~I~~~g~~i~~~~~~i~~~~~~~   79 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITKVKGKIFFLPEEI   79 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-cCCCEEEECCEehhHhcCcEEEEeecc
Confidence            478999999996 579999999999999999999999999999999999998 999999999998764211      010


Q ss_pred             ----CCChhhHHHHHHHH-------HHHHHHHHhcCce----EEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhh
Q 026725          150 ----SFKAEDRVENIRRI-------GEVAKLFADAGVI----CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE  214 (234)
Q Consensus       150 ----~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~  214 (234)
                          .++..+.......+       ..+...+......    ....++.+.+++...+++++..+.+  +++|||+..++
T Consensus        80 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~l--lllDEPt~gLD  157 (200)
T d1sgwa_          80 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAID  157 (200)
T ss_dssp             CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTSC
T ss_pred             cCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCE--EEEcCcccccC
Confidence                11111111111000       0111222222221    1123455667778899999999998  89999999998


Q ss_pred             hcchhhHHHHHH
Q 026725          215 ARDPKGLYKLAR  226 (234)
Q Consensus       215 ~R~~~~l~~~~~  226 (234)
                      ......+++.+.
T Consensus       158 ~~~~~~i~~~l~  169 (200)
T d1sgwa_         158 EDSKHKVLKSIL  169 (200)
T ss_dssp             TTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888877776654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=6.2e-24  Score=178.06  Aligned_cols=148  Identities=17%  Similarity=0.240  Sum_probs=103.4

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc----cC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR----DL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~----~~  149 (234)
                      -++++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|+++|.++......    .+
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i   91 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQV   91 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-CCccEEEECCcccchhhhhhhhheE
Confidence            4899999999964  468999999999999999999999999999999999998 9999999999987642100    00


Q ss_pred             CCChhh-------HH-------------HHHHHHHHH---HHHHHhc--CceE-E----EecCcccHHHHHHHHHhCCCC
Q 026725          150 SFKAED-------RV-------------ENIRRIGEV---AKLFADA--GVIC-I----ACLISPYRKDRDACRSMLPEG  199 (234)
Q Consensus       150 ~~~~~~-------~~-------------~~~~~~~~~---~~~~~~~--~~~~-~----~~~~~~~~~~~~~~~~ll~~~  199 (234)
                      ++.+++       ..             +.+......   .......  ++.. +    ..++.+.+++..+|++++..+
T Consensus        92 ~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p  171 (253)
T d3b60a1          92 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS  171 (253)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             EEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence            000000       00             001000000   0111111  1100 0    124556678889999999999


Q ss_pred             CceEEEEeCChhhhhhcchhhHHHHHH
Q 026725          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       200 ~l~~~~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      .+  +++|||++.|+......+++.++
T Consensus       172 ~i--lilDEpts~LD~~~~~~i~~~l~  196 (253)
T d3b60a1         172 PI--LILDEATSALDTESERAIQAALD  196 (253)
T ss_dssp             SE--EEEETTTSSCCHHHHHHHHHHHH
T ss_pred             CE--EEeccccccCCHHHHHHHHHHHH
Confidence            98  89999999998888888777665

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.87  E-value=1.6e-23  Score=175.50  Aligned_cols=149  Identities=15%  Similarity=0.177  Sum_probs=104.2

Q ss_pred             cceeeceeeecCC--ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc----ccC
Q 026725           76 VAKSTNILWHKNS--VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (234)
Q Consensus        76 ~~~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~----~~~  149 (234)
                      -++++|++|+|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++.....    ..+
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~lr~~i   94 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQI   94 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-ccccccccCCEEcccCCHHHhhhee
Confidence            4889999999965  569999999999999999999999999999999999998 999999999998864210    000


Q ss_pred             CCChh--------------------hHHHHHHHHHH--HHHHHHhc--Cc-eEE----EecCcccHHHHHHHHHhCCCCC
Q 026725          150 SFKAE--------------------DRVENIRRIGE--VAKLFADA--GV-ICI----ACLISPYRKDRDACRSMLPEGD  200 (234)
Q Consensus       150 ~~~~~--------------------~~~~~~~~~~~--~~~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~ll~~~~  200 (234)
                      ++.++                    ...+.......  ........  +. ..+    ..++.+.+++..+||+++..+.
T Consensus        95 ~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~  174 (255)
T d2hyda1          95 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  174 (255)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             eeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence            00000                    00011110000  01111111  01 011    1234556778889999999999


Q ss_pred             ceEEEEeCChhhhhhcchhhHHHHHHc
Q 026725          201 FIEVFMDVPLQVCEARDPKGLYKLARE  227 (234)
Q Consensus       201 l~~~~ld~P~~~l~~R~~~~l~~~~~~  227 (234)
                      +  +++|||++.|+....+.+++.+++
T Consensus       175 i--lilDEpts~LD~~t~~~i~~~l~~  199 (255)
T d2hyda1         175 I--LILDEATSALDLESESIIQEALDV  199 (255)
T ss_dssp             E--EEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             E--EEEeCccccCCHHHHHHHHHHHHH
Confidence            9  899999999988888888887753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=2.2e-22  Score=166.58  Aligned_cols=144  Identities=17%  Similarity=0.157  Sum_probs=101.7

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccccccc--ccCCCChh
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAE  154 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~--~~~~~~~~  154 (234)
                      +++ ++.++||+..+  |+||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....  +.+++.++
T Consensus         3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~r~ig~v~Q   77 (240)
T d2onka1           3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQ   77 (240)
T ss_dssp             EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred             EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCcCCHHHcCceeecc
Confidence            455 56788988765  8999996 58999999999999999999999998 999999999999864321  12233222


Q ss_pred             hH--------HHHHHH----------HHHHHHHHHhcCceE-----EEecCcccHHHHHHHHHhCCCCCceEEEEeCChh
Q 026725          155 DR--------VENIRR----------IGEVAKLFADAGVIC-----IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (234)
Q Consensus       155 ~~--------~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~  211 (234)
                      +.        .+++..          -..+..++...++..     ...++.+.+++..++++++..+.+  +++|||+.
T Consensus        78 ~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i--lllDEPts  155 (240)
T d2onka1          78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLS  155 (240)
T ss_dssp             SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTS
T ss_pred             chhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCc--eEecCccc
Confidence            11        111000          012233333333321     123355667888999999999999  89999999


Q ss_pred             hhhhcchhhHHHHHHc
Q 026725          212 VCEARDPKGLYKLARE  227 (234)
Q Consensus       212 ~l~~R~~~~l~~~~~~  227 (234)
                      .++......+++.+++
T Consensus       156 ~LD~~~~~~i~~~i~~  171 (240)
T d2onka1         156 AVDLKTKGVLMEELRF  171 (240)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9998888888877653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.8e-20  Score=151.77  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=92.7

Q ss_pred             cceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc--------
Q 026725           76 VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR--------  147 (234)
Q Consensus        76 ~~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~--------  147 (234)
                      +++++|++++|    +++++||+|++||+++|+||||||||||+++|+|+.  |++|+|.++|+++......        
T Consensus         3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~--~~~G~I~~~g~~i~~~~~~~~~~~~~~   76 (231)
T d1l7vc_           3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGKGSIQFAGQPLEAWSATKLALHRAY   76 (231)
T ss_dssp             EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC--CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred             EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCceEEEECCEECCcCCHHHHHhhcee
Confidence            57888887654    699999999999999999999999999999999964  6789999999987542110        


Q ss_pred             ---c----CCCChhhHHHHH----HHHHHHHHHHHhcCc-----eEEEecCcccHHHHHHHHHhCC-------CCCceEE
Q 026725          148 ---D----LSFKAEDRVENI----RRIGEVAKLFADAGV-----ICIACLISPYRKDRDACRSMLP-------EGDFIEV  204 (234)
Q Consensus       148 ---~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~-------~~~l~~~  204 (234)
                         .    +.....+.....    .....+..+....++     .....++.+.+++...+++++.       .+.+  +
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l--l  154 (231)
T d1l7vc_          77 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--L  154 (231)
T ss_dssp             ECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--E
T ss_pred             eeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE--E
Confidence               0    111111100000    000011111111111     1112344556666777888764       3456  8


Q ss_pred             EEeCChhhhhhcchhhHHHHHH
Q 026725          205 FMDVPLQVCEARDPKGLYKLAR  226 (234)
Q Consensus       205 ~ld~P~~~l~~R~~~~l~~~~~  226 (234)
                      ++|||+..|+......+++.++
T Consensus       155 llDEPt~gLD~~~~~~i~~~i~  176 (231)
T d1l7vc_         155 LLDEPMNSLDVAQQSALDKILS  176 (231)
T ss_dssp             EESSCSTTCCHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHHHHH
Confidence            9999999998877777776655

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.6e-19  Score=151.77  Aligned_cols=144  Identities=13%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             ceeeceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc--cc--c-cc----
Q 026725           77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HG--L-NR----  147 (234)
Q Consensus        77 ~~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~--~~--~-~~----  147 (234)
                      +.++|++  +.+.++|+|+||+|++||+++|+||||||||||+++|+|++. |++|+|.++|+---  ..  . +.    
T Consensus        39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~i~~v~Q~~~l~~~tv~e  115 (281)
T d1r0wa_          39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-ASEGIIKHSGRVSFCSQFSWIMPGTIKE  115 (281)
T ss_dssp             -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEECCSCEEEECSSCCCCSEEHHH
T ss_pred             EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-CCCcEEEECCEEEEEeccccccCceeec
Confidence            4444544  356789999999999999999999999999999999999998 99999999985210  00  0 00    


Q ss_pred             --cCCCChh--hHHHHHHHHHHHHHHHHhcC---ceEE----EecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhc
Q 026725          148 --DLSFKAE--DRVENIRRIGEVAKLFADAG---VICI----ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR  216 (234)
Q Consensus       148 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R  216 (234)
                        .++....  ......... ..........   ...+    ..++.+.+++...+++++..+.+  +++|||+..|+..
T Consensus       116 ni~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i--llLDEPts~LD~~  192 (281)
T d1r0wa_         116 NIIFGVSYDEYRYKSVVKAC-QLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVF  192 (281)
T ss_dssp             HHTTTSCCCHHHHHHHHHHT-TCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESCCCSSCHH
T ss_pred             cccccccccchHHHHHHHHH-HhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc--hhhcCccccCCHH
Confidence              0111111  111111110 0011111111   0111    12456677888999999999999  8999999999777


Q ss_pred             chhhHHHHHH
Q 026725          217 DPKGLYKLAR  226 (234)
Q Consensus       217 ~~~~l~~~~~  226 (234)
                      ....+++.+.
T Consensus       193 ~~~~i~~~~~  202 (281)
T d1r0wa_         193 TEEQVFESCV  202 (281)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHH
Confidence            7777776543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.69  E-value=6.8e-17  Score=131.05  Aligned_cols=153  Identities=56%  Similarity=0.874  Sum_probs=124.0

Q ss_pred             ceeeecCCccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc-cCCccEEEEcCccccccccccCCCChhhHHHH
Q 026725           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (234)
Q Consensus        81 ~l~~~~~~~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~-~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~  159 (234)
                      |++|+-.+....+...+.-++|.+++|.|+|||||||+++.|...+. ....-.+.++|+.++.....+++++..++.+.
T Consensus         3 ~~~~~~~~~~~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~   82 (208)
T d1m7ga_           3 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN   82 (208)
T ss_dssp             CCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH
T ss_pred             CcccccCCcCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHH
Confidence            33444333333455667789999999999999999999999986553 12335789999999987777788999999998


Q ss_pred             HHHHHHHHHHHHhcCceEEEecCcccHHHHHHHHHhC--------CCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCC
Q 026725          160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML--------PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK  231 (234)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--------~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~  231 (234)
                      ..+...++..+...+..+++....+....|+.++++.        ....+.+++++.|.+.|.+|+++++|+...+|.++
T Consensus        83 ~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~~  162 (208)
T d1m7ga_          83 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK  162 (208)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCccc
Confidence            8888888888999999999988888888888888764        23356778999999999999999999999999988


Q ss_pred             CC
Q 026725          232 GT  233 (234)
Q Consensus       232 ~~  233 (234)
                      ++
T Consensus       163 ~~  164 (208)
T d1m7ga_         163 EF  164 (208)
T ss_dssp             SC
T ss_pred             ce
Confidence            75

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-08  Score=78.17  Aligned_cols=123  Identities=58%  Similarity=1.029  Sum_probs=59.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEEEe
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (234)
                      +|.+++|+|++||||||+++.|+..+..+..-...+.++...........+.............................
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            78899999999999999999999887644444556666665543333334444444444444333333344444444444


Q ss_pred             cCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcchhhHHH
Q 026725          181 LISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYK  223 (234)
Q Consensus       181 ~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~~~l~~  223 (234)
                      ........+...+.+...  ..........+...+..+..+.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  142 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYK  142 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC---------------
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhh
Confidence            443333333333333222  2222334455555555555444433

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=5.3e-09  Score=79.62  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=63.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-----cccCCCChhhHHHHHHHHHHHHHHHHhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADA  173 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (234)
                      .+.+.+++|+|++||||||+++.|+..+..     ..++.+.+....     .....+...........+..........
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHA-----AFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRT   77 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTC-----EEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999987642     233333332110     0001122222222333322333333333


Q ss_pred             CceEEEecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          174 GVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      .......+.......++.+.+....  +..++++.|.+.+.+|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~Rl~  120 (171)
T d1knqa_          78 NKVSLIVCSALKKHYRDLLREGNPN--LSFIYLKGDFDVIESRLK  120 (171)
T ss_dssp             CSEEEEECCCCSHHHHHHHHTTCTT--EEEEEEECCHHHHHHHHH
T ss_pred             cCceEeeccchHHHHHHHHHHhCCC--ceEEeecCCHHHHHHHHH
Confidence            4444444555555556666554443  345789999999887763

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.74  E-value=2.1e-09  Score=82.55  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      .++|+||||||||||+++|+|.+. +..|.+...+.+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~-~~~g~~~~~~~~   37 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG-KRAIGFWTEEVR   37 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-GGEEEEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC-CCcceEEECCcc
Confidence            379999999999999999999998 788888877644

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.65  E-value=2.3e-07  Score=70.25  Aligned_cols=132  Identities=39%  Similarity=0.653  Sum_probs=69.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCC-ccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCceEE
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~-~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (234)
                      .+|.+++|+|++||||||+++.|+..+.... .....++.+..............+........................
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVI   83 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhcccceee
Confidence            6899999999999999999999998775221 122333333322111111112222222222222222222222233333


Q ss_pred             EecCcccHHHHH-HHHHhCCCCCceEEEEeCChhhhhhcchhhHHHHHHcCcCC
Q 026725          179 ACLISPYRKDRD-ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK  231 (234)
Q Consensus       179 ~~~~~~~~~~~~-~~~~ll~~~~l~~~~ld~P~~~l~~R~~~~l~~~~~~~~~~  231 (234)
                      ............ ..........+.....+.+......|.....+.....+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (183)
T d1m8pa3          84 AAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIK  137 (183)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSS
T ss_pred             cccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhh
Confidence            222222222221 22222223334556788899999888888888887776644

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.54  E-value=1.5e-07  Score=70.07  Aligned_cols=112  Identities=19%  Similarity=0.149  Sum_probs=56.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccc-----cCCCChhhHHHHHHHHHHHH-HHHHhc--C
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVA-KLFADA--G  174 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~--~  174 (234)
                      ++++|.|++|||||||++.|..-    ..|...++.+++......     ...+................ ......  .
T Consensus         3 klIii~G~pGsGKTTla~~L~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh----CCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccC
Confidence            57899999999999999988652    236777777766432111     01112211111111111111 222221  1


Q ss_pred             ceEEEecCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcch
Q 026725          175 VICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ...+..........++...+++..  ..+..++++.|.+.|.+|..
T Consensus        79 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~  124 (152)
T d1ly1a_          79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS  124 (152)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHT
T ss_pred             CCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHH
Confidence            122333222233333333333333  23445788999999988864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.49  E-value=4.6e-07  Score=68.07  Aligned_cols=113  Identities=18%  Similarity=0.082  Sum_probs=60.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChh---hHHHHHHHHHHHHHHHHhcCceEEE
Q 026725          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE---DRVENIRRIGEVAKLFADAGVICIA  179 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  179 (234)
                      .++.|.||+||||||+++.|+..+.    +.+.++++.+.............   ........+......+...+...+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC----CCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            4789999999999999999998664    45667776665332211111111   1111122222222222233433333


Q ss_pred             ecCcc---cHHHHHHHHHhCCCCCceEEEEeCChhhhhhcchh
Q 026725          180 CLISP---YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (234)
Q Consensus       180 ~~~~~---~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~~  219 (234)
                      .....   .+...+.+........+..++++.|.+.+.+|..+
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  121 (176)
T d2bdta1          79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL  121 (176)
T ss_dssp             ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTT
T ss_pred             ccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHh
Confidence            32221   22233344444554455557888999988877543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=5.5e-07  Score=68.11  Aligned_cols=39  Identities=31%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      .|++++|.||+||||||+++.|+..+.   ...+.+++++++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg---~~~~~~~~d~~~   41 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSDDLW   41 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTTHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEecHHHHH
Confidence            589999999999999999999988654   235678887664

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=5e-07  Score=69.61  Aligned_cols=103  Identities=13%  Similarity=0.052  Sum_probs=62.0

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCce
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (234)
                      +.-++.+++.++|++||||||+++.++..     .|.+.++.+++..            +.....   .+...+ ..+..
T Consensus         9 ~~~~~p~liil~G~pGsGKST~a~~l~~~-----~~~~~i~~D~~~~------------~~~~~~---~~~~~l-~~g~~   67 (172)
T d1yj5a2           9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVS-----AGYVHVNRDTLGS------------WQRCVS---SCQAAL-RQGKR   67 (172)
T ss_dssp             SSCSSCCEEEEECCTTSSHHHHHHHHTGG-----GTCEEEEHHHHCS------------HHHHHH---HHHHHH-HTTCC
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHh-----cCCEEEchHHHHH------------HHHHHH---HHHHHH-HCCCC
Confidence            34577899999999999999999987542     3556777776642            111111   111112 23334


Q ss_pred             EEEecCcccHHHHHHHHHhCCC--CCceEEEEeCChhhhhhcchhh
Q 026725          177 CIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (234)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~ld~P~~~l~~R~~~~  220 (234)
                      .+..........|....+++..  ..+..++++.|.+.|.+|..+.
T Consensus        68 vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R  113 (172)
T d1yj5a2          68 VVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  113 (172)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             ceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHh
Confidence            4444444444445555444433  3445578899999998887554

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.38  E-value=2.4e-06  Score=64.24  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccccc-------------cccCCCChhhHHHHH-HHHHHHH
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------------NRDLSFKAEDRVENI-RRIGEVA  167 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~  167 (234)
                      ..+++|.|++||||||+++.|+..+..   ..+.++++......             .............+. +......
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC---CeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            468999999999999999999998752   22334432221100             000111111122222 2222233


Q ss_pred             HHHHhcCceEEE-ecCcccHHHHHHHHHhCCCCCceEEEEeCChhhhhhcch
Q 026725          168 KLFADAGVICIA-CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (234)
Q Consensus       168 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~~~ld~P~~~l~~R~~  218 (234)
                      ..+.......+. .....................+..++++.|.+.+.+|..
T Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~  131 (178)
T d1qhxa_          80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRET  131 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHH
T ss_pred             HHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHH
Confidence            333333333322 222223333445555555566667889999999988753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.6e-06  Score=65.04  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=2.2e-06  Score=65.92  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=23.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      |.+++|+||||||||||++.|...+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999999998765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=2e-05  Score=60.91  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +.+++++|++||||||+++.|+..+.+.......++++.++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r   42 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR   42 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccccee
Confidence            45899999999999999999998776433334455555443

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.84  E-value=6.2e-06  Score=62.62  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      .+.|+|++||||||+++.|+-.+..     -+++++++
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~-----~~id~D~~   36 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY-----EFVDTDIF   36 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC-----CEEehhhh
Confidence            4678999999999999999987653     26666554

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=4.4e-06  Score=61.65  Aligned_cols=24  Identities=42%  Similarity=0.653  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+||+||||||+++.|+-.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.2e-05  Score=57.96  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccC-CccEEE-EcCcccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYI-LDGDNCR  142 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p-~~G~i~-~~g~~v~  142 (234)
                      -++|-.+++.|.+||||||++++|.-.+..- +.-.|. ++|++++
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~   48 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT   48 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH
Confidence            3689999999999999999999995545312 223343 5565543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.78  E-value=7.1e-06  Score=61.64  Aligned_cols=28  Identities=39%  Similarity=0.623  Sum_probs=24.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|-.++|+||+||||||+++.|+..+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4677899999999999999999988664

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=6.6e-06  Score=61.98  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++|+||+|||||||++.|+..+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999998664

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=4.6e-07  Score=69.42  Aligned_cols=35  Identities=29%  Similarity=0.214  Sum_probs=29.1

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.+.++++.+| +++|+|+|||||||++.+|.-.+.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            45667777776 899999999999999999986653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=7.2e-06  Score=61.87  Aligned_cols=24  Identities=33%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|+|++|||||||+..|...+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            789999999999999998888776

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.5e-06  Score=62.37  Aligned_cols=24  Identities=38%  Similarity=0.598  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.|+||+|||||||++.++..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999999885

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=1.2e-05  Score=61.50  Aligned_cols=30  Identities=50%  Similarity=0.494  Sum_probs=25.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhccc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHW  128 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~  128 (234)
                      -...-+++|.|++|||||||++.|...+..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            344557899999999999999999887763

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.69  E-value=1.1e-05  Score=62.33  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++.+++|+||+||||||+++.|+.-+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998755

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1e-05  Score=63.81  Aligned_cols=26  Identities=35%  Similarity=0.497  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +|.+++|+||||||||||++.|....
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999987654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.68  E-value=9.7e-06  Score=60.63  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcc
Q 026725          105 IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|+||+||||||+++.|+-.+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999987654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.7e-05  Score=61.25  Aligned_cols=27  Identities=30%  Similarity=0.430  Sum_probs=23.7

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+-.+++|+||+||||||+++.|+..+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            455689999999999999999999865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.60  E-value=1.7e-05  Score=59.72  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|.|++||||||+++.|+..+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999998776

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=2.1e-05  Score=64.65  Aligned_cols=29  Identities=31%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.+.++ +.+|+|||||||||++.+|.-++
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence            444444 89999999999999999996543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=1.6e-05  Score=63.67  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=24.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEE
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i  134 (234)
                      +|++.+++|+||+|||||++.|.+-.. ...|.|
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-~~T~~v  126 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEV  126 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC-CC----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh-hhccCc
Confidence            588999999999999999999987544 333444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.5e-05  Score=61.11  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +-++||.|++||||||+++.|...+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999988764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.55  E-value=2.6e-05  Score=62.66  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=34.2

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ..+.+..+.|.||+|||||||++.|++.+.   .+-+.++..+++.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~d~~~~   70 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ   70 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh---cceEEEecHHHHH
Confidence            455667799999999999999999999765   3567788777653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.52  E-value=1.8e-05  Score=61.19  Aligned_cols=28  Identities=32%  Similarity=0.456  Sum_probs=25.2

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.++.++.|+||+||||||+++.|+..+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678899999999999999999998854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.48  E-value=3e-05  Score=59.55  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++|-.++|+||+||||||+++.|+--+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            467788899999999999999999644

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.47  E-value=2.8e-05  Score=58.52  Aligned_cols=23  Identities=57%  Similarity=0.719  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcc
Q 026725          105 IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|+|++||||||+.+.|+..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68899999999999999998774

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=3.5e-05  Score=57.98  Aligned_cols=24  Identities=46%  Similarity=0.601  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhccc
Q 026725          105 IWITGLSGSGKSTLACALSQALHW  128 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~~  128 (234)
                      ++|+|++||||||+.+.|+..+..
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            567899999999999999988763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.44  E-value=5.8e-05  Score=56.98  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++|.|++||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678899999999999999999886

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4.3e-05  Score=65.10  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=23.3

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      .+++..+.+.+|+|+|||||||++.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3445555689999999999999999985

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=4.3e-05  Score=58.83  Aligned_cols=22  Identities=50%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 026725          105 IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++|+||||||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.5e-05  Score=58.57  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -+++|+||+||||||.++.|+..+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999987553

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=4.2e-05  Score=59.16  Aligned_cols=22  Identities=45%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 026725          105 IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++|+||||||||||++.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999997754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.7e-05  Score=57.95  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ..++|+||||||||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            478999999999999999988643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.36  E-value=8.4e-05  Score=58.57  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|+|+.|||||||++.|...+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            689999999999999999987543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=5.1e-05  Score=57.43  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+||+||||||+++.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            378999999999999999988664

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.34  E-value=4e-05  Score=58.85  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.++|+||+||||||+++.|+--+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3588999999999999999987653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.31  E-value=1.4e-05  Score=64.18  Aligned_cols=27  Identities=37%  Similarity=0.425  Sum_probs=22.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|...+++|+||+|||||++.|.+-..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            578889999999999999999988654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.26  E-value=7.4e-05  Score=56.89  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.|+||+||||||+++.|+--+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999998664

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.22  E-value=8.5e-05  Score=58.03  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|-||+||||||+++.|+.-+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578889999999999999998664

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=8.6e-05  Score=57.69  Aligned_cols=24  Identities=54%  Similarity=0.724  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|.||+||||||+++.|+.-+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            889999999999999999987664

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=9.8e-05  Score=56.31  Aligned_cols=27  Identities=19%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +++|+++.|.||+|||||||+-.++.-
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999999888754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.17  E-value=9e-05  Score=56.91  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999984

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=0.0001  Score=55.89  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+||+||||||+++.|+.-+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999987654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0001  Score=55.85  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|+||+||||||.++.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            468999999999999999987553

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.12  E-value=9.7e-05  Score=56.69  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=25.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.++-+++|-|+.||||||+++.|...+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35667999999999999999999988664

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00017  Score=57.80  Aligned_cols=33  Identities=24%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             ccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        91 ~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +-+|++++- ...++.|.|||.|||||++|.++-
T Consensus        31 VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          31 IANPLNLSP-QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEECC-CceEEEEeccCchhhHHHHHHHHH
Confidence            344555543 346899999999999999999854

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00015  Score=60.55  Aligned_cols=28  Identities=36%  Similarity=0.344  Sum_probs=25.0

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..-++||.|++||||||+++.|..++.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4567999999999999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00022  Score=56.24  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=25.6

Q ss_pred             eeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        96 s~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++-++..+++++||+|+||||.+--|+..+.
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45556678999999999999998766776665

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00014  Score=55.62  Aligned_cols=23  Identities=52%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +-++||.|++||||||+++.|.-
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.08  E-value=0.00014  Score=56.06  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.++|+||+||||||+++.|+--+.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC
Confidence            3678999999999999999998553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00016  Score=53.48  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      |-.++|+|++|+|||||++.|.|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999998753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00015  Score=55.15  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+.|+||.||||||+++.|+-.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999998765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.07  E-value=0.00014  Score=60.13  Aligned_cols=39  Identities=31%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      +++|.|+|||||||+.+.|...+....--...+.+++..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            899999999999999999988775222233566666653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00014  Score=54.58  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|+.|+|||||++.|+|.-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.02  E-value=0.00019  Score=52.44  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|+|||||++.+.+--
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.00025  Score=55.99  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++.-.++.+++++||+|+||||.+--|+-.+.
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455567888999999999999998665655443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.00015  Score=54.66  Aligned_cols=22  Identities=41%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999884

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0002  Score=53.77  Aligned_cols=22  Identities=41%  Similarity=0.373  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +++|+|.+|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999974

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00025  Score=55.14  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=24.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|.+++|-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999998765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.00016  Score=60.70  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      ++.+.-+.|.|+.||||||++++|++.++ +..-.+.+.
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~-~~~rivtiE  200 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIE  200 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEE
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhcc-cccceeecc
Confidence            45566689999999999999999999887 655555553

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00021  Score=55.99  Aligned_cols=28  Identities=36%  Similarity=0.565  Sum_probs=25.4

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++|.+++|-|+.||||||+++.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999988775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.96  E-value=0.00022  Score=53.91  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +++|+|.+|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.96  E-value=0.00031  Score=55.21  Aligned_cols=27  Identities=33%  Similarity=0.594  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+++++||+|+||||.+--|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999766776655

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00024  Score=51.76  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|++|+|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999884

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00024  Score=54.59  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|||||||++.|.+--
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998853

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00029  Score=53.28  Aligned_cols=25  Identities=32%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .+=.++|+|.+|+|||||++.|.|.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3446899999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.93  E-value=0.00024  Score=52.23  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.+.+--
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00028  Score=55.97  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..+.|.||+|+||||++++|+..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00033  Score=55.23  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      .+.+.||+|+||||++++|+..+. ..  .+.+++.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~-~~--~~~~~~~~~   71 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ-TN--IHVTSGPVL   71 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT-CC--EEEEETTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC-CC--cccccCccc
Confidence            367999999999999999998776 22  334455443

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00017  Score=56.76  Aligned_cols=27  Identities=33%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+++|-|+.||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00026  Score=55.03  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHh
Q 026725          103 CVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~g  124 (234)
                      -++||+|..||||||+++.+..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998853

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.87  E-value=0.00026  Score=55.67  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.|.||+|+||||++++|+..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            378999999999999999998654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.86  E-value=0.00013  Score=55.44  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|++++|||||++.|.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.83  E-value=0.00022  Score=53.24  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      --.++|+|++|||||||++.|.+-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999997743

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.79  E-value=0.0024  Score=49.93  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +++|.++.|.|++|||||||+..++--.
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987776543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00033  Score=55.37  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcc
Q 026725          105 IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.+.||+|+||||+++++++.+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67999999999999999999775

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.77  E-value=0.0005  Score=54.56  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHh
Q 026725          103 CVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +++.|.|||.|||||++|.++=
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            5899999999999999998863

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.77  E-value=0.00033  Score=58.19  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      +.-+.++||+|+|||.|+|+|+..+..   --+.+++-.+
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~---~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF   85 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcccc---chhccccccc
Confidence            345668999999999999999998752   2455655444

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.77  E-value=0.0019  Score=51.62  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +..-+.|.||+|||||+++++|+..+..   --+.++.-
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~---~~~~i~~~   74 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNF---PFIKICSP   74 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTC---SEEEEECG
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcccc---cccccccc
Confidence            3445789999999999999999997653   23555543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0004  Score=54.45  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=25.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +|.+++|-|+.||||||+++.|...+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            799999999999999999999998775

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00036  Score=54.70  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 026725          105 IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00033  Score=54.68  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=23.8

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +++|+++.|.|++|||||||+-.++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            88999999999999999999987753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00046  Score=53.74  Aligned_cols=21  Identities=48%  Similarity=0.642  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++||+|..||||||.++.+..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00058  Score=53.62  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=24.3

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +++|.++.|.|++||||||++-.++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999999988874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.00021  Score=54.05  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|.+++|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00057  Score=55.31  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v  141 (234)
                      ...-+.+.||+|||||+++++|+..+..   --+.++..++
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~---~~~~i~~~~l   81 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDF   81 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTC---CEEEECSCSS
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCC---CEEEEEhHHh
Confidence            3445789999999999999999987752   3455665544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.67  E-value=0.00037  Score=51.66  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|++|||||||++.|.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998843

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.0012  Score=57.49  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~  142 (234)
                      =+.++||+|||||-|+|.|++++..|   -+..+.-..+
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fT   86 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFT   86 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceee
Confidence            57899999999999999999998755   3455544443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.0006  Score=51.21  Aligned_cols=30  Identities=27%  Similarity=0.498  Sum_probs=27.1

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++|.++.|.|+=||||||+.|.++.-+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            457899999999999999999999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.65  E-value=0.00055  Score=53.87  Aligned_cols=28  Identities=32%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.+.+++++||+|+||||.+--|+..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999998766665554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.64  E-value=0.00069  Score=53.11  Aligned_cols=28  Identities=32%  Similarity=0.502  Sum_probs=22.6

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.+.++.++||+|+||||.+--|+..+.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999998877776654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.63  E-value=0.00061  Score=53.62  Aligned_cols=25  Identities=32%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      +++|+++.|.|++|||||||+-.++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999999999987664

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.59  E-value=0.00092  Score=52.80  Aligned_cols=27  Identities=19%  Similarity=0.121  Sum_probs=23.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ....+.|.||+|+||||+++.|+..+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            345788999999999999999998875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.58  E-value=0.00055  Score=54.21  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.++.|.||.|+|||||++.++.-..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            456889999999999999998876553

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.00094  Score=51.22  Aligned_cols=24  Identities=46%  Similarity=0.635  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998775

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00093  Score=54.23  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      =++.|.++-|.||+|||||||+-.++.....++.-.+++|.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            3789999999999999999998777665554666668888764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00071  Score=56.71  Aligned_cols=36  Identities=28%  Similarity=0.224  Sum_probs=27.7

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+.-.-.+.-+++|.|++|||||||+..|...+.
T Consensus        44 l~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          44 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            333433345678899999999999999999987654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.55  E-value=0.00062  Score=52.74  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      +++|+++.|.|++|+|||||+..++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8899999999999999999986554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00065  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -++|+|++|+|||||++.|.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.51  E-value=0.00071  Score=50.17  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|++|+|||||++.+.+--
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999887643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.51  E-value=0.00081  Score=52.32  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=24.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      +++|+++.|.|++|+||||++-.++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999877764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00023  Score=53.35  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .-.++|+|.+++|||||+++|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345999999999999999999774

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.50  E-value=0.00088  Score=49.84  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++.-.++|+|.+|||||||++.|.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34456899999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.0007  Score=52.91  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=25.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcccC--CccEEEEcCcc
Q 026725          105 IWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDN  140 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~~p--~~G~i~~~g~~  140 (234)
                      +.|.||+|+||||++++++..+...  ....+.++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~   76 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD   76 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccc
Confidence            6789999999999999998765411  12345555443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00094  Score=54.89  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.+-++||-|+.|||||||.+.|.-.+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            345799999999999999998886554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.00019  Score=52.88  Aligned_cols=23  Identities=35%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+++|||||++.|.|.-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999999853

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.45  E-value=0.00063  Score=54.81  Aligned_cols=36  Identities=31%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             ccccccceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        89 ~~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .+.|+++-.=+.+|+++.|.|++|+||||++..++-
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344555544489999999999999999999888874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.00091  Score=49.93  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|++|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.38  E-value=0.00077  Score=54.36  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.|.|.-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999999853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.00099  Score=53.48  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      -+.+.||+|+|||+|+++|+..+..   -.+.++..+
T Consensus        44 giLl~GppGtGKT~la~aia~~~~~---~~~~i~~~~   77 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEARV---PFITASGSD   77 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHHcCC---CEEEEEhHH
Confidence            3789999999999999999987652   345555433

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.00097  Score=49.72  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++++|.+|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.00086  Score=54.33  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.1

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +..+.-+.|.||+|+|||+|+++|++.+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34444578999999999999999999765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.35  E-value=0.00086  Score=50.71  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|...||||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.33  E-value=0.002  Score=55.28  Aligned_cols=38  Identities=32%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      .+.-++.|.||.||||||++..+...+..+...-+.+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE  193 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE  193 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec
Confidence            56678999999999999999999887753433334443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.30  E-value=0.0015  Score=49.78  Aligned_cols=31  Identities=35%  Similarity=0.280  Sum_probs=23.9

Q ss_pred             cccceeeecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        92 l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      ++...+.+ .|.-+.|.|+||+|||||+-.+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            44444555 67789999999999999987764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0011  Score=51.70  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcc
Q 026725          105 IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.|.||+|+||||++++|+..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999999998654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0011  Score=49.08  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999988763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0013  Score=49.33  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++++|.+|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998766

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.00096  Score=52.63  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 026725          105 IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999998865

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0014  Score=52.69  Aligned_cols=28  Identities=29%  Similarity=0.478  Sum_probs=23.0

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++|  +.|.||+|||||+++++++....
T Consensus        36 ~~~~g--iLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          36 KPPRG--ILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence            33444  78999999999999999999654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.17  E-value=0.0017  Score=54.21  Aligned_cols=29  Identities=38%  Similarity=0.421  Sum_probs=24.5

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .-.+.-+++|.|+.|||||||+..|...+
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34566789999999999999999998754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.15  E-value=0.002  Score=52.30  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=34.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      ++.|.++-|.||+|||||||+-.++.....++.-.+++|.+.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            689999999999999999999888776654555567888764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0015  Score=48.27  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++++|.+|+|||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0014  Score=48.49  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++++|.+|+|||||++.+..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.14  E-value=0.00092  Score=53.12  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=48.72  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|++|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999987653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.10  E-value=0.0017  Score=51.05  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHh
Q 026725          103 CVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++||.|.-||||||.++.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999965

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0015  Score=48.61  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999876

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.10  E-value=0.00098  Score=49.71  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++++|++|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999866

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0017  Score=48.11  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.04  E-value=0.0027  Score=51.57  Aligned_cols=43  Identities=28%  Similarity=0.316  Sum_probs=33.2

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      -++.|.++-|.||+|||||||+-.++........-.+++|.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            4889999999999999999997666655443444457888765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.03  E-value=0.0022  Score=48.89  Aligned_cols=25  Identities=48%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      -.|.-+.|.|+||+|||||+-.+..
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3566789999999999999876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0016  Score=49.11  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|++|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0017  Score=48.27  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0018  Score=48.06  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988775

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.96  E-value=0.0024  Score=49.95  Aligned_cols=30  Identities=20%  Similarity=0.091  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccE
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLT  133 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~  133 (234)
                      .+.|+|.+|+|||||++.+..-...|+-|-
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG~   37 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI   37 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence            578999999999999998754433366553

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0021  Score=47.53  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999888764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.94  E-value=0.0022  Score=50.38  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +++|+|...||||||+++|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            4999999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.0021  Score=48.39  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|.+|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0022  Score=47.46  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|.+|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0021  Score=52.79  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=29.3

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      |.=+.+.+|+..+|+|++|+|||||+..|+.-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            3346799999999999999999999999987543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0022  Score=47.22  Aligned_cols=20  Identities=30%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++++|..|+|||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.002  Score=47.83  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++|+|.+|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            37899999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0021  Score=47.35  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.91  E-value=0.0023  Score=54.16  Aligned_cols=30  Identities=33%  Similarity=0.221  Sum_probs=27.4

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++++..+.+.||+|+||||+++.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            467888999999999999999999999876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.87  E-value=0.0012  Score=54.78  Aligned_cols=25  Identities=36%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          103 CVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .-+.|.|+.|+|||||+|.++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3578999999999999999999874

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0018  Score=55.47  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      --++|+|.+|+|||||+++|.|.
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            34899999999999999999984

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0029  Score=52.40  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=27.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~  139 (234)
                      +...+.++||+|+|||.|++.|+..+..   .-+.++.-
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s   86 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMS   86 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGG
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhccC---CeeEeccc
Confidence            3446889999999999999999998752   35555533

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0028  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.415  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|.+|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999977765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.84  E-value=0.0032  Score=49.15  Aligned_cols=34  Identities=29%  Similarity=0.349  Sum_probs=26.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      +.|.||+|||||.|+.+++-.........+++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~   72 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   72 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEech
Confidence            6899999999999999998766534445555543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0029  Score=49.58  Aligned_cols=26  Identities=27%  Similarity=0.232  Sum_probs=23.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +.+++|=|+-||||||+++.|.-.+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            46899999999999999999998664

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0026  Score=47.64  Aligned_cols=21  Identities=43%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++++|..|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0024  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0026  Score=47.04  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0024  Score=48.62  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            889999999999999988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0025  Score=47.41  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0027  Score=46.96  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.78  E-value=0.0016  Score=48.98  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          102 GCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       102 Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      --.++++|++|+|||||++.+.+-
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999988653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.003  Score=46.83  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++|+|.+|+|||||++.+..-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0032  Score=46.66  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++++|.+|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0033  Score=47.26  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+..-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999887653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0034  Score=46.51  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0031  Score=47.01  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|.+|+|||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.63  E-value=0.0038  Score=47.14  Aligned_cols=25  Identities=44%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      .-.|.-+.|.|+||+||||++-.+.
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3457789999999999999986654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.003  Score=47.09  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .++++|.+|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            37899999999999999998743

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0032  Score=50.19  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -+|+++.|.|++|+|||||+-.|+-.
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            35999999999999999999877654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.57  E-value=0.0062  Score=45.46  Aligned_cols=29  Identities=24%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccE
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLT  133 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~  133 (234)
                      .++|+|..|+|||||++.+..-.. |+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~-~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE-AGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS-CCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCccE
Confidence            478999999999999998876544 56554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0038  Score=46.38  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++++|.+|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368899999999999998875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0039  Score=46.21  Aligned_cols=20  Identities=30%  Similarity=0.523  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999997755

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.53  E-value=0.0048  Score=51.32  Aligned_cols=45  Identities=24%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             eeecCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCccccc
Q 026725           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (234)
Q Consensus        97 ~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~v~~  143 (234)
                      ...++| ++.+.||+|+|||.|++.|++.+. ..-.-+.++|-++..
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~-~~~~~~~~~~~~~~~  163 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG-GKDKYATVRFGEPLS  163 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHHH-TTSCCEEEEBSCSST
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHhc-CCCCeEEEEhhHhhh
Confidence            345555 456689999999999999999864 222345666666543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0035  Score=47.32  Aligned_cols=29  Identities=28%  Similarity=0.126  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc-cCCcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH-WRGKL  132 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~-~p~~G  132 (234)
                      .+.|+|.+|+|||||++.+.-... .|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            478999999999999998843221 25666

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0021  Score=47.97  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=8.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|..|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.44  E-value=0.0027  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHh
Q 026725          103 CVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~g  124 (234)
                      -.+.++|++|+|||||++.+..
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999998865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.37  E-value=0.0047  Score=45.78  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0039  Score=48.93  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++.|.|.=|||||||++.+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6889999999999999988763

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0051  Score=45.40  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999987653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0051  Score=46.20  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhccc---CC-----ccEEEEcCccc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHW---RG-----KLTYILDGDNC  141 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~---p~-----~G~i~~~g~~v  141 (234)
                      .++++|.+|+|||||++.+.+--..   ++     ...+.++|+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~   52 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH   52 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEE
Confidence            4799999999999999987764321   22     12356677654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0023  Score=47.70  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++++|.+|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0049  Score=46.44  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++|+|.+|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            79999999999999988764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.24  E-value=0.0065  Score=49.11  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ...+++|.|..|.|||||++.+..-
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999998653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.12  E-value=0.0098  Score=49.12  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEcCcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~g~~  140 (234)
                      +.-.+.++||+|+|||.+++.|+..+......-+.++.-.
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~   91 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   91 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence            3346779999999999999999998742334556676543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0058  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      .++++|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999976655

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0059  Score=46.15  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .++|+|.+|+|||||++.+..-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999777653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.93  E-value=0.0076  Score=50.89  Aligned_cols=28  Identities=36%  Similarity=0.526  Sum_probs=23.0

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++++- +-++||+|+|||-|+|.|+.++.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence            44554 66789999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0074  Score=46.62  Aligned_cols=24  Identities=38%  Similarity=0.518  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.+.||+|+||||+++.++..+.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            488999999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0078  Score=47.34  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.|.||+|+||||++++++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            467889999999999999987764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0082  Score=50.99  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=24.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHH-HhhcccCCccEEEEc
Q 026725          103 CVIWITGLSGSGKSTLACAL-SQALHWRGKLTYILD  137 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l-~gll~~p~~G~i~~~  137 (234)
                      ..+.|+|++|||||++++.+ ..++. ...+.+.+|
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~-~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLL-RGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHh-CCCCEEEEe
Confidence            46899999999999998754 44444 344555555

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.0081  Score=44.96  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+.|+|..|+|||||++.+..-.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999886543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.75  E-value=0.0084  Score=48.89  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhh
Q 026725          103 CVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      -.+||+|.+.+|||||+++|++.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            34999999999999999999985

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.73  E-value=0.0068  Score=49.73  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      +||+|.+.+|||||+++|+|.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999885

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0069  Score=49.22  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          103 CVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       103 e~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+++|+||-++|||||++.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            479999999999999999999854

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.65  E-value=0.0091  Score=45.35  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 026725          105 IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++|+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998853

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.56  E-value=0.0099  Score=48.27  Aligned_cols=31  Identities=29%  Similarity=0.251  Sum_probs=27.1

Q ss_pred             ceeeecCCEEEEEEcCCCCcHHHHHHHHHhh
Q 026725           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus        95 vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .=+.+-+|+..+|+|++|+|||||+..++.-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999998888754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.44  E-value=0.011  Score=47.72  Aligned_cols=22  Identities=50%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 026725          104 VIWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gl  125 (234)
                      .+||+|.+.+|||||+++|++.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999975

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.30  E-value=0.022  Score=47.41  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEE
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~  136 (234)
                      .+.|=|+-||||||+++.|...+. ...+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~-~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS-GGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG-CSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc-cCCCeEEE
Confidence            578899999999999999999776 44344444

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.17  E-value=0.012  Score=47.47  Aligned_cols=21  Identities=43%  Similarity=0.555  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      -++|+|..|||||||+.+|..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            479999999999999999954

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.16  E-value=0.011  Score=47.69  Aligned_cols=27  Identities=19%  Similarity=0.086  Sum_probs=22.2

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      +..++ ++++|.-.||||||+++|+|.-
T Consensus        24 ~~~P~-ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          24 LDLPQ-IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCCE-EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCCe-EEEEcCCCCCHHHHHHHHhCCC
Confidence            34444 6789999999999999999953

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.12  E-value=0.012  Score=47.85  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhc
Q 026725          105 IWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll  126 (234)
                      ++++|.-.||||||+++|.|.-
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999954

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.012  Score=48.56  Aligned_cols=20  Identities=55%  Similarity=0.782  Sum_probs=18.0

Q ss_pred             cCCEEEEEEcCCCCcHHHHH
Q 026725          100 QKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLl  119 (234)
                      +.|++..+.|+||+|||||.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999975

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.09  E-value=0.015  Score=44.76  Aligned_cols=20  Identities=35%  Similarity=0.444  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++++|..++|||||+..|..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999964

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.75  E-value=0.014  Score=48.31  Aligned_cols=19  Identities=53%  Similarity=0.758  Sum_probs=17.2

Q ss_pred             CCEEEEEEcCCCCcHHHHH
Q 026725          101 KGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLl  119 (234)
                      .|++..+.|+||+|||||.
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999974

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.68  E-value=0.017  Score=46.85  Aligned_cols=20  Identities=25%  Similarity=0.179  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026725          104 VIWITGLSGSGKSTLACALS  123 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~  123 (234)
                      -++|+|..|||||||+..|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47999999999999999884

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.58  E-value=0.016  Score=47.88  Aligned_cols=20  Identities=50%  Similarity=0.753  Sum_probs=17.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHH
Q 026725          100 QKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLl  119 (234)
                      +.|.+..+.|+||+|||||.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            47888899999999999996

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.02  Score=46.14  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -+.|+||+|+|||+++..++..+.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHH
Confidence            567999999999999999998764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.022  Score=43.78  Aligned_cols=24  Identities=25%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -..|+|++|.|||+++..|+..+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            468999999999999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.14  E-value=0.024  Score=43.25  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhc
Q 026725          104 VIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -++|+|.-.+|||||+..|.+..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998754

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.12  E-value=0.058  Score=38.91  Aligned_cols=26  Identities=31%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHH-HHHHHHhhcc
Q 026725          102 GCVIWITGLSGSGKST-LACALSQALH  127 (234)
Q Consensus       102 Ge~~~liG~nGsGKST-Llr~l~gll~  127 (234)
                      |.+..++||-.||||| |++.+.....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~   28 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEY   28 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence            7889999999999999 7787766543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.94  E-value=0.031  Score=42.76  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++++|.-.+|||||+..|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999999875

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.80  E-value=0.032  Score=45.14  Aligned_cols=37  Identities=19%  Similarity=0.116  Sum_probs=29.0

Q ss_pred             cccccceeeecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        90 ~~l~~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+++ .=+.+-+|+.++|+|++|+|||+|+..+.-...
T Consensus        56 ~~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~   92 (276)
T d1fx0a3          56 IAID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ   92 (276)
T ss_dssp             TTTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             eEEe-ccccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence            3443 347899999999999999999999987654333

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.72  E-value=0.03  Score=46.47  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|=|+-||||||+++.|...+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999998775

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.52  E-value=0.041  Score=50.04  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=24.2

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      -.+.+.+.|.|.||||||+-.|.|...+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3577999999999999999999887655

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.35  E-value=0.044  Score=44.00  Aligned_cols=30  Identities=27%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             eecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        98 ~i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..++--.+++.||.++||||++.+|+.++.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            345666889999999999999999999874

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.20  E-value=0.047  Score=49.85  Aligned_cols=28  Identities=32%  Similarity=0.378  Sum_probs=24.9

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.+.+.|.|.||||||.-.|.|...+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999987663

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.11  E-value=0.035  Score=46.01  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          104 VIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .++|=|+-||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478999999999999999987654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.043  Score=45.91  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=18.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHH
Q 026725          101 KGCVIWITGLSGSGKSTLACAL  122 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l  122 (234)
                      .+.++.|.||.|+||||++..+
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHH
Confidence            3569999999999999987544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.07  E-value=0.024  Score=46.11  Aligned_cols=31  Identities=19%  Similarity=0.156  Sum_probs=26.1

Q ss_pred             cceeeecCCEEEEEEcCCCCcHHHHHHHHHh
Q 026725           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus        94 ~vs~~i~~Ge~~~liG~nGsGKSTLlr~l~g  124 (234)
                      |.-+.+-+|+.++|+|++|+|||+|+..+..
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            3347899999999999999999999876553

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.00  E-value=0.051  Score=49.58  Aligned_cols=28  Identities=32%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ++.+.+.|.|.||||||+-.|.|...+.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5679999999999999999999987763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.93  E-value=0.032  Score=45.02  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=15.7

Q ss_pred             EEEEcCCCCcHHHHH-HHHHhhc
Q 026725          105 IWITGLSGSGKSTLA-CALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTLl-r~l~gll  126 (234)
                      +.|.|+.||||||.+ ..++.++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            678899999999765 3344433

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.85  E-value=0.03  Score=44.65  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=15.9

Q ss_pred             EEEEcCCCCcHHHH-HHHHHhhc
Q 026725          105 IWITGLSGSGKSTL-ACALSQAL  126 (234)
Q Consensus       105 ~~liG~nGsGKSTL-lr~l~gll  126 (234)
                      +.|+|+.||||||+ +..+..++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHH
Confidence            57889999999976 44444443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.83  E-value=0.058  Score=41.12  Aligned_cols=27  Identities=22%  Similarity=0.227  Sum_probs=23.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+..+.+.||+|+||||+++.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            466789999999999999999998764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.74  E-value=0.031  Score=38.85  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHH
Q 026725           99 QQKGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLl  119 (234)
                      +++|+.+.|..|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            578999999999999999554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.51  E-value=0.058  Score=41.54  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      +++--.+++.||.++|||+++..|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            56667899999999999999999999875

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.44  E-value=0.059  Score=49.78  Aligned_cols=29  Identities=31%  Similarity=0.361  Sum_probs=25.2

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.+.+.+.|.|.||||||+-.|.|...+.
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36789999999999999999998887763

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.39  E-value=0.098  Score=41.18  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      ...-+.|.|+.|+||++++++|-..-.......+.++
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~   58 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALN   58 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccch
Confidence            3445789999999999999999764432222344444

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=91.17  E-value=0.064  Score=49.50  Aligned_cols=28  Identities=29%  Similarity=0.284  Sum_probs=24.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      .+.+.+.|.|.||||||.-.|.|...+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999888887664

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.15  E-value=0.058  Score=41.76  Aligned_cols=20  Identities=35%  Similarity=0.401  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 026725          105 IWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++++|..++|||||+..|..
T Consensus         6 i~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHH
Confidence            79999999999999988853

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.09  E-value=0.073  Score=48.67  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      -.+.+.+.|.|.||||||+-.|.+...+.
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999988663

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.077  Score=37.90  Aligned_cols=24  Identities=33%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             CCEEEEEEcCCCCcHHHHH-HHHHh
Q 026725          101 KGCVIWITGLSGSGKSTLA-CALSQ  124 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLl-r~l~g  124 (234)
                      +|.+..|+||-.|||||-| +.+..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~   25 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRR   25 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHH
Confidence            5899999999999999965 44444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.76  E-value=0.085  Score=42.08  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHhhc
Q 026725          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLlr~l~gll  126 (234)
                      .+-.++|+|-+.+|||||++.|.|.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            45569999999999999999999854

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.49  E-value=0.081  Score=41.08  Aligned_cols=21  Identities=33%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhh
Q 026725          105 IWITGLSGSGKSTLACALSQA  125 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gl  125 (234)
                      ++++|.-.+|||||+..|...
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~   32 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHD   32 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            689999999999999999643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.28  E-value=0.072  Score=37.41  Aligned_cols=23  Identities=39%  Similarity=0.271  Sum_probs=18.1

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHH
Q 026725          100 QKGCVIWITGLSGSGKSTLACAL  122 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l  122 (234)
                      +.-+...|.+|.|||||+++-.+
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHH
Confidence            34567889999999999987443

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.20  E-value=0.06  Score=42.80  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             ecCCEEEEEEcCCCCcHHH--HHHHHHhhcc
Q 026725           99 QQKGCVIWITGLSGSGKST--LACALSQALH  127 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKST--Llr~l~gll~  127 (234)
                      +.+|+.+.|.+|.|||||+  |..++...+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~   36 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK   36 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6789999999999999996  3455554443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.44  E-value=0.071  Score=44.28  Aligned_cols=19  Identities=32%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 026725          105 IWITGLSGSGKSTLACALS  123 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~  123 (234)
                      ++|+|.-++|||||+.+|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999985

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.25  E-value=0.091  Score=44.35  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhcc
Q 026725          105 IWITGLSGSGKSTLACALSQALH  127 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~gll~  127 (234)
                      ..|+|++|.|||+++..|+..+.
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHHH
Confidence            58899999999999988876553

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.06  E-value=0.11  Score=40.81  Aligned_cols=21  Identities=33%  Similarity=0.292  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      -++++|..++|||||+..|+-
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            379999999999999988853

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.46  E-value=0.24  Score=37.42  Aligned_cols=37  Identities=43%  Similarity=0.634  Sum_probs=27.4

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725          102 GCVIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus       102 Ge~~~li-G~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      |.++++. +.-|+||||+.-.|+..+...+.-.+.+|-
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~   39 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG   39 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            6788888 668999999999998887633334455553

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.57  E-value=0.11  Score=40.91  Aligned_cols=19  Identities=37%  Similarity=0.424  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 026725          105 IWITGLSGSGKSTLACALS  123 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~  123 (234)
                      ++++|.-++|||||+..|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            7999999999999999984

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.31  Score=36.18  Aligned_cols=35  Identities=31%  Similarity=0.321  Sum_probs=26.0

Q ss_pred             EEEEEEcCC-CCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          103 CVIWITGLS-GSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       103 e~~~liG~n-GsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      +.+.|.|-+ |.||||+.-.|+..+...+.-...++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            467899996 99999999999988863333344554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.27  E-value=0.2  Score=35.99  Aligned_cols=25  Identities=32%  Similarity=0.262  Sum_probs=20.3

Q ss_pred             cCCEEEEEEcCCCCcHHHHH-HHHHh
Q 026725          100 QKGCVIWITGLSGSGKSTLA-CALSQ  124 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLl-r~l~g  124 (234)
                      ..|.+..|+||-.|||||-| +.+..
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHH
Confidence            47999999999999999964 54444

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.00  E-value=0.18  Score=38.86  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             ecCCEEEEEEcCCCCcHHHHHHHHH
Q 026725           99 QQKGCVIWITGLSGSGKSTLACALS  123 (234)
Q Consensus        99 i~~Ge~~~liG~nGsGKSTLlr~l~  123 (234)
                      +-.|+-+.++.|.|||||+..-..+
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHHHHHH
Confidence            3478888999999999998654433

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.03  E-value=0.25  Score=36.90  Aligned_cols=19  Identities=26%  Similarity=0.368  Sum_probs=15.6

Q ss_pred             CCEEEEEEcCCCCcHHHHH
Q 026725          101 KGCVIWITGLSGSGKSTLA  119 (234)
Q Consensus       101 ~Ge~~~liG~nGsGKSTLl  119 (234)
                      .|.-+.+..|.|||||+.+
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            4566789999999999864

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.39  E-value=0.74  Score=34.48  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=24.7

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHhhcccCCccEEEEcC
Q 026725          104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDG  138 (234)
Q Consensus       104 ~~~li-G~nGsGKSTLlr~l~gll~~p~~G~i~~~g  138 (234)
                      ++++. |.-|+||||++-.|+..+...+.-...+|-
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~   38 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDA   38 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            45666 778999999999998887633334445543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.76  E-value=0.44  Score=35.10  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=14.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 026725          105 IWITGLSGSGKSTLACALS  123 (234)
Q Consensus       105 ~~liG~nGsGKSTLlr~l~  123 (234)
                      +.+.+|.|||||..+-.++
T Consensus        26 ~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHH
Confidence            4577999999998654444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.36  E-value=0.76  Score=35.78  Aligned_cols=38  Identities=26%  Similarity=0.476  Sum_probs=27.5

Q ss_pred             cCCEEEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       100 ~~Ge~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      +...++.+.|.=|.||||++-.|+-.+...+.-...+|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            34568889999999999999888887753333334444

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=81.18  E-value=0.81  Score=35.42  Aligned_cols=34  Identities=35%  Similarity=0.437  Sum_probs=25.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhcccCCccEEEEc
Q 026725          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~gll~~p~~G~i~~~  137 (234)
                      .++|.|.=|+||||++-.|+..+...+.-...+|
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID   36 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            6788999999999999988888763333334555

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.13  E-value=0.46  Score=35.47  Aligned_cols=21  Identities=48%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 026725          104 VIWITGLSGSGKSTLACALSQ  124 (234)
Q Consensus       104 ~~~liG~nGsGKSTLlr~l~g  124 (234)
                      ++-|+|.+.||||.++..++.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            367999999999999988764