Query 026726
Match_columns 234
No_of_seqs 178 out of 317
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4325 Uncharacterized conser 100.0 8.5E-43 1.8E-47 297.1 16.5 197 10-227 3-210 (212)
2 PF09282 Mago-bind: Mago bindi 99.7 4.8E-18 1.1E-22 105.5 0.9 27 25-51 1-27 (27)
3 KOG2315 Predicted translation 99.1 1.3E-10 2.8E-15 113.9 6.8 51 176-226 515-566 (566)
4 COG5354 Uncharacterized protei 97.0 0.0011 2.3E-08 65.7 5.4 51 174-224 507-558 (561)
5 PF14282 FlxA: FlxA-like prote 87.6 6.2 0.00014 31.3 9.0 54 176-231 16-70 (106)
6 PF14193 DUF4315: Domain of un 60.6 19 0.00041 27.9 4.5 37 176-212 19-57 (83)
7 PF14257 DUF4349: Domain of un 56.1 49 0.0011 29.4 7.1 52 176-231 136-188 (262)
8 TIGR03091 SASP_sspK small, aci 53.5 5.9 0.00013 25.8 0.6 10 31-40 12-21 (32)
9 PF10153 DUF2361: Uncharacteri 50.7 34 0.00074 28.0 4.8 36 184-228 2-37 (114)
10 PF13234 rRNA_proc-arch: rRNA- 48.1 47 0.001 29.7 5.7 52 179-230 209-267 (268)
11 PF03980 Nnf1: Nnf1 ; InterPr 37.8 1.6E+02 0.0034 22.8 6.6 49 180-228 28-89 (109)
12 PF15188 CCDC-167: Coiled-coil 36.6 1.8E+02 0.0038 22.8 6.5 37 178-214 4-44 (85)
13 PF08176 SspK: Small acid-solu 36.0 16 0.00035 25.8 0.6 10 31-40 27-36 (47)
14 PF13243 Prenyltrans_1: Prenyl 35.9 12 0.00026 28.0 0.0 15 26-40 5-19 (109)
15 PF13864 Enkurin: Calmodulin-b 33.3 1.1E+02 0.0024 23.6 5.0 56 174-232 39-94 (98)
16 PRK03081 sspK acid-soluble spo 31.0 22 0.00047 25.4 0.6 10 31-40 26-35 (50)
17 COG4550 Predicted membrane pro 30.8 2E+02 0.0044 24.0 6.3 21 175-195 5-25 (120)
18 PF07106 TBPIP: Tat binding pr 30.2 2.2E+02 0.0048 23.7 6.7 57 175-233 75-137 (169)
19 PF14723 SSFA2_C: Sperm-specif 29.8 2.5E+02 0.0053 25.0 7.0 54 176-231 106-171 (179)
20 PF10458 Val_tRNA-synt_C: Valy 29.2 1.8E+02 0.0038 20.9 5.2 55 177-231 2-65 (66)
21 PF03942 DTW: DTW domain; Int 26.9 15 0.00032 31.5 -0.9 12 35-46 120-131 (203)
22 PF05121 GvpK: Gas vesicle pro 26.8 2.3E+02 0.0049 22.5 5.7 51 176-226 13-66 (88)
23 PF03962 Mnd1: Mnd1 family; I 25.9 3.7E+02 0.0081 23.3 7.5 27 205-231 103-129 (188)
24 COG3148 Uncharacterized conser 25.6 17 0.00038 33.1 -0.8 12 34-45 134-145 (231)
25 PF12017 Tnp_P_element: Transp 23.4 1.3E+02 0.0028 27.4 4.3 37 176-213 29-65 (236)
26 KOG2072 Translation initiation 20.3 2.8E+02 0.0061 30.3 6.5 33 199-231 650-682 (988)
27 PF12329 TMF_DNA_bd: TATA elem 20.2 2E+02 0.0044 21.4 4.1 6 189-194 12-17 (74)
No 1
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.5e-43 Score=297.11 Aligned_cols=197 Identities=46% Similarity=0.625 Sum_probs=158.9
Q ss_pred HHHHHHhhhcccccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhchhHHHHHhhhccCCCCCCCCCcCCCC---
Q 026726 10 EELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK--- 86 (234)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~k~~~~~~~~~~~~~~PPG~~p~~~~k--- 86 (234)
+..+.||+.+.....|++||.+||||||||||+||||+||+|+|||++|+|++..|++.++. .+||||+|++.++
T Consensus 3 aaGkpaAeesgnlkegek~ia~TqRPDGT~RK~~RikeGYtPedEVp~YenK~~kffKek~e--q~PPGlePdaaa~~kp 80 (212)
T KOG4325|consen 3 AAGKPAAEESGNLKEGEKIIAPTQRPDGTLRKPIRIKEGYTPEDEVPKYENKGSKFFKEKAE--QGPPGLEPDAAAKPKP 80 (212)
T ss_pred ccccchhhhhccccccceeeccccCCCCccccceeccCCCCchhhhhhhhhhhhHHHhhhhh--cCCCCCCCCCCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999882 4999999985543
Q ss_pred --------ccchhhhhhhHHHHHHHHHHHhhccchhhhcccccchhhhhhhhcccCCCCcchhhhhhhhhccccCCCCcC
Q 026726 87 --------PKTKSVKRNERKKEKRQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVE 158 (234)
Q Consensus 87 --------~~skaakKNaKRKEkrkq~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~ 158 (234)
..++++++|.||+++++++. +++.. .++| ..+..+..|.-..+.|..++++.+..+|
T Consensus 81 k~~eggEpglsktakRnlKkeek~qaqa-EK~ea---eea~-----------S~sldsqkVnleasa~~~~apqgn~aa~ 145 (212)
T KOG4325|consen 81 KAAEGGEPGLSKTAKRNLKKEEKLQAQA-EKAEA---EEAG-----------SASLDSQKVNLEASAMEALAPQGNNAAC 145 (212)
T ss_pred CcccCCCccchhHHHhhhhHHHHHHHHH-Hhhcc---hhhh-----------ccccCccccchhhhhhhccCcccCcccc
Confidence 26888999999988877643 33322 1122 1233344566677777777777777665
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcHHHHHHHHHHHHHh
Q 026726 159 NPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEK 227 (234)
Q Consensus 159 ~~~~~~~~~~~~~~~~~e~~KkiRnLkKKLrqIE~Lk~k~~G~~L~~eQleKl~k~~el~~EL~~Le~~ 227 (234)
+.. +........++.+||||+|+||||+.|+|++++..+.|+++|++|+.+..+|+.|++.||..
T Consensus 146 ~aA----~d~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdln~~qkEkfeKLaerRa~eeaLED~ 210 (212)
T KOG4325|consen 146 GAA----PDPGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDLNPEQKEKFEKLAERRAEEEALEDK 210 (212)
T ss_pred cCC----CCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 532 22222234679999999999999999999999999999999999999999999999999864
No 2
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=99.69 E-value=4.8e-18 Score=105.46 Aligned_cols=27 Identities=63% Similarity=1.195 Sum_probs=14.0
Q ss_pred CCeeccCccCCCCCcccceecCCCCCC
Q 026726 25 GERILAPTRRPDGTLRKPIRIRAGYVP 51 (234)
Q Consensus 25 g~~~i~~s~R~DGt~Rk~~rvr~gy~p 51 (234)
|++|||+||||||||||+||||+||+|
T Consensus 1 Ger~I~~s~RpDGt~RK~irvr~GY~P 27 (27)
T PF09282_consen 1 GERIIPASQRPDGTWRKEIRVRPGYTP 27 (27)
T ss_dssp --EEE--EE-TTS-EE--EE--TT---
T ss_pred CccCcCcccCCCCCcccceeccCCcCC
Confidence 799999999999999999999999998
No 3
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.3e-10 Score=113.87 Aligned_cols=51 Identities=35% Similarity=0.418 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHhcHHHHHHHHHHHHH
Q 026726 176 DIDKRIRAIKKKIRLSEAQQ-QKAGQQELKPEQLEKLSKLEGWRNELKLLEE 226 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk-~k~~G~~L~~eQleKl~k~~el~~EL~~Le~ 226 (234)
+.+||||+|.||||.||.|+ +...|+.|+++||+||.++..|+.||+.|++
T Consensus 515 ~~ekKir~L~kkLraIe~LK~r~a~Ge~Le~nQl~kIq~E~~~l~ELk~L~~ 566 (566)
T KOG2315|consen 515 EEEKKIRSLLKKLRAIEALKERMANGEQLEVNQLNKIQKEPKLLSELKKLGW 566 (566)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHhhhHHHHHHHHhhcC
Confidence 88999999999999999999 6688999999999999999999999999963
No 4
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.98 E-value=0.0011 Score=65.72 Aligned_cols=51 Identities=31% Similarity=0.342 Sum_probs=46.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHhcHHHHHHHHHHH
Q 026726 174 GQDIDKRIRAIKKKIRLSEAQQ-QKAGQQELKPEQLEKLSKLEGWRNELKLL 224 (234)
Q Consensus 174 ~~e~~KkiRnLkKKLrqIE~Lk-~k~~G~~L~~eQleKl~k~~el~~EL~~L 224 (234)
....+.|||.|-||||.|+.|+ +...|++|+..|+-||..+.+++.||+.|
T Consensus 507 e~s~e~ki~sl~~~lRaIe~lker~~~~eele~~qv~kietee~VlsElk~l 558 (561)
T COG5354 507 EYSDEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKEL 558 (561)
T ss_pred ccCHHHHHHHHHHHhhhhhcchhhcccccchhhhhhhhhhhHHHHHHHhhhc
Confidence 3344559999999999999999 66889999999999999999999999988
No 5
>PF14282 FlxA: FlxA-like protein
Probab=87.64 E-value=6.2 Score=31.28 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhhh
Q 026726 176 DIDKRIRAIKKKIRLSEAQQQK-AGQQELKPEQLEKLSKLEGWRNELKLLEEKKADL 231 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk~k-~~G~~L~~eQleKl~k~~el~~EL~~Le~~la~l 231 (234)
..+..|..|++.|..+.+-=.. .....|++++.. .+...|..+|..|+.+++.|
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3478888888777666543333 344777777653 45788999999999888765
No 6
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=60.61 E-value=19 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHHH--HHhccCCCCHHHHHHHh
Q 026726 176 DIDKRIRAIKKKIRLSEAQQ--QKAGQQELKPEQLEKLS 212 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk--~k~~G~~L~~eQleKl~ 212 (234)
+.+.|+|.|..++++.|.++ +.+.+-.|+|+||.-+-
T Consensus 19 e~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L 57 (83)
T PF14193_consen 19 ELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFL 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56789999999999999999 66789999999997553
No 7
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=56.07 E-value=49 Score=29.42 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhc-HHHHHHHHHHHHHhhhhh
Q 026726 176 DIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSK-LEGWRNELKLLEEKKADL 231 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk~k~~G~~L~~eQleKl~k-~~el~~EL~~Le~~la~l 231 (234)
|.+.||++|++......+|-.+.. +.+.+-+|.+ ...++.||+.|+.++..|
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAK----TVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999998888888765443 4555555543 467888999999877655
No 8
>TIGR03091 SASP_sspK small, acid-soluble spore protein K. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspK.
Probab=53.54 E-value=5.9 Score=25.83 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=8.8
Q ss_pred CccCCCCCcc
Q 026726 31 PTRRPDGTLR 40 (234)
Q Consensus 31 ~s~R~DGt~R 40 (234)
+|.|||||+.
T Consensus 12 aSKR~dGtin 21 (32)
T TIGR03091 12 ASKRPDGTIN 21 (32)
T ss_pred hhcCCCCCcc
Confidence 7999999975
No 9
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=50.72 E-value=34 Score=27.96 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHhcHHHHHHHHHHHHHhh
Q 026726 184 IKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKK 228 (234)
Q Consensus 184 LkKKLrqIE~Lk~k~~G~~L~~eQleKl~k~~el~~EL~~Le~~l 228 (234)
|+++||+|+-|=.+. .|.++- ..+.+.+|+.|+.++
T Consensus 2 lK~riRdieRLL~r~---~Lp~~v------R~~~Er~L~~L~~~l 37 (114)
T PF10153_consen 2 LKKRIRDIERLLKRK---DLPADV------RVEKERELEALKREL 37 (114)
T ss_pred HHHHHHHHHHHHcCC---CCCHHH------HHHHHHHHHHHHHHH
Confidence 788889888885332 777664 334445555555444
No 10
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=48.14 E-value=47 Score=29.66 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHH--HHHHHHHHHHHHHHHhccCCCC-----HHHHHHHhcHHHHHHHHHHHHHhhhh
Q 026726 179 KRIR--AIKKKIRLSEAQQQKAGQQELK-----PEQLEKLSKLEGWRNELKLLEEKKAD 230 (234)
Q Consensus 179 KkiR--nLkKKLrqIE~Lk~k~~G~~L~-----~eQleKl~k~~el~~EL~~Le~~la~ 230 (234)
=+|+ .+.+-++.|+.|+.+..+..|- .++++.+.++..|.+||+.|..++..
T Consensus 209 mkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 209 MKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3454 6777888888998665544442 47889999999999999999988753
No 11
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.83 E-value=1.6e+02 Score=22.85 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHH-----HHhccCC--------CCHHHHHHHhcHHHHHHHHHHHHHhh
Q 026726 180 RIRAIKKKIRLSEAQQ-----QKAGQQE--------LKPEQLEKLSKLEGWRNELKLLEEKK 228 (234)
Q Consensus 180 kiRnLkKKLrqIE~Lk-----~k~~G~~--------L~~eQleKl~k~~el~~EL~~Le~~l 228 (234)
+=|+|..||..++.|- ++..|.. |+|+++-...--..+..+++.|...+
T Consensus 28 ~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l 89 (109)
T PF03980_consen 28 EERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARL 89 (109)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4589999999998885 1223443 77877654444444444444444443
No 12
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.56 E-value=1.8e+02 Score=22.80 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHhccCCCCHHHHHHHhcH
Q 026726 178 DKRIRAIKKKIRL----SEAQQQKAGQQELKPEQLEKLSKL 214 (234)
Q Consensus 178 ~KkiRnLkKKLrq----IE~Lk~k~~G~~L~~eQleKl~k~ 214 (234)
.+.|-.|..||.+ +|.+..+..+..|+|++..-+.++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E 44 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKE 44 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHH
Confidence 4566666666654 455557788999999887666544
No 13
>PF08176 SspK: Small acid-soluble spore protein K family; InterPro: IPR012611 This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=35.97 E-value=16 Score=25.78 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=8.7
Q ss_pred CccCCCCCcc
Q 026726 31 PTRRPDGTLR 40 (234)
Q Consensus 31 ~s~R~DGt~R 40 (234)
+|.|||||+.
T Consensus 27 aSKR~dGtiN 36 (47)
T PF08176_consen 27 ASKRADGTIN 36 (47)
T ss_pred hhcCCCCCcc
Confidence 5999999975
No 14
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=35.86 E-value=12 Score=27.98 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=0.0
Q ss_pred CeeccCccCCCCCcc
Q 026726 26 ERILAPTRRPDGTLR 40 (234)
Q Consensus 26 ~~~i~~s~R~DGt~R 40 (234)
-.+|-..|+|||+|.
T Consensus 5 ~~~l~~~Q~~dG~W~ 19 (109)
T PF13243_consen 5 AEWLLSQQNPDGSWG 19 (109)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 357889999999994
No 15
>PF13864 Enkurin: Calmodulin-binding
Probab=33.33 E-value=1.1e+02 Score=23.59 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhhhh
Q 026726 174 GQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLE 232 (234)
Q Consensus 174 ~~e~~KkiRnLkKKLrqIE~Lk~k~~G~~L~~eQleKl~k~~el~~EL~~Le~~la~l~ 232 (234)
..+...-|..|+++..++..= ..+=.+.-+=+-+..++..|+.+|.+||..+.-++
T Consensus 39 eeER~~lL~~Lk~~~~el~~e---y~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~ls 94 (98)
T PF13864_consen 39 EEERQELLEGLKKNWDELNKE---YQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLS 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777889999888766432 22223334566788899999999999998876654
No 16
>PRK03081 sspK acid-soluble spore protein K; Provisional
Probab=31.03 E-value=22 Score=25.36 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=8.8
Q ss_pred CccCCCCCcc
Q 026726 31 PTRRPDGTLR 40 (234)
Q Consensus 31 ~s~R~DGt~R 40 (234)
+|.|||||+.
T Consensus 26 ASKR~dGtiN 35 (50)
T PRK03081 26 ASKRPNGTIN 35 (50)
T ss_pred hhcCCCCCcc
Confidence 7999999975
No 17
>COG4550 Predicted membrane protein [Function unknown]
Probab=30.83 E-value=2e+02 Score=23.97 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.1
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 026726 175 QDIDKRIRAIKKKIRLSEAQQ 195 (234)
Q Consensus 175 ~e~~KkiRnLkKKLrqIE~Lk 195 (234)
.+..++.++|..||++.|+.+
T Consensus 5 ~di~~~a~~la~~ik~teeV~ 25 (120)
T COG4550 5 DDILKQADNLANKIKETEEVK 25 (120)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 477899999999999999988
No 18
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.25 E-value=2.2e+02 Score=23.70 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=37.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH------hccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhhhhc
Q 026726 175 QDIDKRIRAIKKKIRLSEAQQQK------AGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEA 233 (234)
Q Consensus 175 ~e~~KkiRnLkKKLrqIE~Lk~k------~~G~~L~~eQleKl~k~~el~~EL~~Le~~la~l~~ 233 (234)
.+.+..|..|+..|.+++.--+. .-...+..++|... ...|..|++.|+..|..|..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~--i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREE--IEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 35566788888887776543311 11345556666543 67888899999988877653
No 19
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=29.84 E-value=2.5e+02 Score=24.99 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcc------CCCC------HHHHHHHhcHHHHHHHHHHHHHhhhhh
Q 026726 176 DIDKRIRAIKKKIRLSEAQQQKAGQ------QELK------PEQLEKLSKLEGWRNELKLLEEKKADL 231 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk~k~~G------~~L~------~eQleKl~k~~el~~EL~~Le~~la~l 231 (234)
|.+-.-+.|+.==++.++|+...-+ ..|+ .+||.-| +++++.||.+||.+|.+-
T Consensus 106 Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsL--R~avRqElqELE~QL~DR 171 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSL--RSAVRQELQELEFQLEDR 171 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 6666777777777888888833222 2344 3677777 889999999999987653
No 20
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.19 E-value=1.8e+02 Score=20.91 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHhc-cCCCC--H-HHH-HHHhcHHHHHHHHHHHHHhhhhh
Q 026726 177 IDKRIRAIKKKIRL----SEAQQQKAG-QQELK--P-EQL-EKLSKLEGWRNELKLLEEKKADL 231 (234)
Q Consensus 177 ~~KkiRnLkKKLrq----IE~Lk~k~~-G~~L~--~-eQl-eKl~k~~el~~EL~~Le~~la~l 231 (234)
+++-|..|.|+|.. |+.++.+.. ..-+. | +-+ .--.+..++..+|..|...+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666654 445554444 33333 3 222 23345678888888888887765
No 21
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=26.90 E-value=15 Score=31.52 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.2
Q ss_pred CCCCcccceecC
Q 026726 35 PDGTLRKPIRIR 46 (234)
Q Consensus 35 ~DGt~Rk~~rvr 46 (234)
-||||++++++-
T Consensus 120 iDgTW~qA~km~ 131 (203)
T PF03942_consen 120 IDGTWRQAKKML 131 (203)
T ss_pred ECCchHHHHHHH
Confidence 699999998863
No 22
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=26.84 E-value=2.3e+02 Score=22.46 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHHHHHH--HHhccCCCCHHHHHHHhc-HHHHHHHHHHHHH
Q 026726 176 DIDKRIRAIKKKIRLSEAQQ--QKAGQQELKPEQLEKLSK-LEGWRNELKLLEE 226 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk--~k~~G~~L~~eQleKl~k-~~el~~EL~~Le~ 226 (234)
...+=+=.+=.=|||.=+.+ ++..++.|+++|++.+.. -..|.+.+..|..
T Consensus 13 gL~~LVLtvVELLRqlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~ 66 (88)
T PF05121_consen 13 GLARLVLTVVELLRQLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCE 66 (88)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555567776666 667899999999999864 3445555555554
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.86 E-value=3.7e+02 Score=23.31 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=20.8
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHhhhhh
Q 026726 205 PEQLEKLSKLEGWRNELKLLEEKKADL 231 (234)
Q Consensus 205 ~eQleKl~k~~el~~EL~~Le~~la~l 231 (234)
.+-...|.+..+|..+++.|..++..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567888888888888888877644
No 24
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=17 Score=33.13 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=9.9
Q ss_pred CCCCCcccceec
Q 026726 34 RPDGTLRKPIRI 45 (234)
Q Consensus 34 R~DGt~Rk~~rv 45 (234)
=.|||||+++|+
T Consensus 134 llDgTW~eArKM 145 (231)
T COG3148 134 LLDGTWREARKM 145 (231)
T ss_pred EecCccHHHHHH
Confidence 469999998875
No 25
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.36 E-value=1.3e+02 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhc
Q 026726 176 DIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSK 213 (234)
Q Consensus 176 e~~KkiRnLkKKLrqIE~Lk~k~~G~~L~~eQleKl~k 213 (234)
..++.++.|+++|..++.|+... ...+.++|+..|..
T Consensus 29 ~le~~l~~Lk~~l~~~~~l~~~L-~~~Fs~~Qi~~lk~ 65 (236)
T PF12017_consen 29 RLEKELKKLKQKLEKYQKLENSL-KQIFSEDQIRNLKN 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHhc
Confidence 34566777777777766666433 34567889887754
No 26
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=2.8e+02 Score=30.29 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhhh
Q 026726 199 GQQELKPEQLEKLSKLEGWRNELKLLEEKKADL 231 (234)
Q Consensus 199 ~G~~L~~eQleKl~k~~el~~EL~~Le~~la~l 231 (234)
.|..++++++++|....=...+|++|+....+|
T Consensus 650 ~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kEl 682 (988)
T KOG2072|consen 650 GGKEKDLEDLEKLDADQIKARQIEELEKERKEL 682 (988)
T ss_pred ccccCChHHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776666666666666554443
No 27
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.18 E-value=2e+02 Score=21.43 Aligned_cols=6 Identities=0% Similarity=-0.263 Sum_probs=2.6
Q ss_pred HHHHHH
Q 026726 189 RLSEAQ 194 (234)
Q Consensus 189 rqIE~L 194 (234)
-+|..|
T Consensus 12 e~Ia~L 17 (74)
T PF12329_consen 12 EQIAQL 17 (74)
T ss_pred HHHHHH
Confidence 344444
Done!