Query 026726
Match_columns 234
No_of_seqs 178 out of 317
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rk8_C PYM protein, within the 99.9 1E-24 3.5E-29 155.8 2.1 49 21-69 5-53 (58)
2 3twe_A Alpha4H; unknown functi 75.8 1.6 5.6E-05 26.1 2.1 14 176-189 12-25 (27)
3 4g3b_A Alpha4F3D; alpha helix, 40.4 18 0.0006 21.5 2.1 14 176-189 12-25 (26)
4 3he5_B Synzip2; heterodimeric 27.2 1.4E+02 0.005 20.0 6.3 22 206-229 27-48 (52)
5 3ljc_A ATP-dependent protease 26.5 1.2E+02 0.0042 25.4 6.0 54 175-230 194-250 (252)
6 2l5g_B Putative uncharacterize 24.2 63 0.0022 21.4 2.9 17 178-194 22-38 (42)
7 1ykh_B RNA polymerase II holoe 21.8 2.9E+02 0.0098 21.6 6.9 45 181-228 63-108 (132)
8 1yke_B RNA polymerase II holoe 21.5 2.7E+02 0.0092 22.4 6.9 45 181-228 63-108 (151)
9 1gmj_A ATPase inhibitor; coile 19.8 2.1E+02 0.0071 21.4 5.3 10 179-188 40-49 (84)
10 3he5_A Synzip1; heterodimeric 18.8 62 0.0021 21.6 2.0 14 176-189 35-48 (49)
No 1
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=99.89 E-value=1e-24 Score=155.80 Aligned_cols=49 Identities=41% Similarity=0.742 Sum_probs=29.3
Q ss_pred cccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhchhHHHHHhh
Q 026726 21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKEL 69 (234)
Q Consensus 21 ~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~k~~~~~~~~ 69 (234)
...+|++|||+||||||||||+||||+||+|||||++|++++++++++.
T Consensus 5 ~~~~g~~~I~~s~RpDGT~RK~irVr~GY~Pqeev~~Y~~k~~~~~~~r 53 (58)
T 1rk8_C 5 LQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQR 53 (58)
T ss_dssp EEETTEEEECCEECTTSCEECCEECCTTCCC------------------
T ss_pred EccCCCEEcccccCCCCccccceeccCCcCCHHHhhhhhhhhhHHHHhh
Confidence 4568999999999999999999999999999999999999999665443
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=75.77 E-value=1.6 Score=26.13 Aligned_cols=14 Identities=43% Similarity=0.971 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHH
Q 026726 176 DIDKRIRAIKKKIR 189 (234)
Q Consensus 176 e~~KkiRnLkKKLr 189 (234)
+.+.++|.|+||||
T Consensus 12 dlqerlrklrkklr 25 (27)
T 3twe_A 12 DLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 67789999999998
No 3
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=40.36 E-value=18 Score=21.46 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHH
Q 026726 176 DIDKRIRAIKKKIR 189 (234)
Q Consensus 176 e~~KkiRnLkKKLr 189 (234)
+.+.++|..+||||
T Consensus 12 d~qerlrk~rkklr 25 (26)
T 4g3b_A 12 DXQERLRKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56789999999997
No 4
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.15 E-value=1.4e+02 Score=20.00 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=17.9
Q ss_pred HHHHHHhcHHHHHHHHHHHHHhhh
Q 026726 206 EQLEKLSKLEGWRNELKLLEEKKA 229 (234)
Q Consensus 206 eQleKl~k~~el~~EL~~Le~~la 229 (234)
.-|+|| ...|++||..||...+
T Consensus 27 qnleki--ianlrdeiarleneva 48 (52)
T 3he5_B 27 QNLEKI--IANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHC
T ss_pred hhHHHH--HHHHHHHHHHHHHHHh
Confidence 356888 6789999999998765
No 5
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=26.52 E-value=1.2e+02 Score=25.37 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=38.3
Q ss_pred CchHHHHHHHHHHH-HHHHHHH--HHhccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhh
Q 026726 175 QDIDKRIRAIKKKI-RLSEAQQ--QKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKAD 230 (234)
Q Consensus 175 ~e~~KkiRnLkKKL-rqIE~Lk--~k~~G~~L~~eQleKl~k~~el~~EL~~Le~~la~ 230 (234)
.+...|++.|-.=| ++|+.++ +++... -.++++|-+|+=-|+++|+.+..+|.+
T Consensus 194 ~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~--v~~~~~k~Qrey~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 194 SDVNERLEYLMAMMESEIDLLQVEKRIRNR--VKKQMEKSQREYYLNEQMKAIQKELGE 250 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777665555 3445444 444433 268999999999999999999888765
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.16 E-value=63 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026726 178 DKRIRAIKKKIRLSEAQ 194 (234)
Q Consensus 178 ~KkiRnLkKKLrqIE~L 194 (234)
+++|-.|++||++.|+-
T Consensus 22 e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 22 EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56888899999888764
No 7
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.80 E-value=2.9e+02 Score=21.60 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCH-HHHHHHhcHHHHHHHHHHHHHhh
Q 026726 181 IRAIKKKIRLSEAQQQKAGQQELKP-EQLEKLSKLEGWRNELKLLEEKK 228 (234)
Q Consensus 181 iRnLkKKLrqIE~Lk~k~~G~~L~~-eQleKl~k~~el~~EL~~Le~~l 228 (234)
.+.|-.|-|||+.|=...-|..-.+ +|+..| .+|..|+...+..+
T Consensus 63 a~dli~k~kqIe~LIdsLP~~~~see~Q~~ri---~~L~~E~~~~~~el 108 (132)
T 1ykh_B 63 STDIILKTRQINKLIDSLPGVDVSAEEQLRKI---DMLQKKLVEVEDEK 108 (132)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3566778899999987776766554 777765 45566666655543
No 8
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.48 E-value=2.7e+02 Score=22.42 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCH-HHHHHHhcHHHHHHHHHHHHHhh
Q 026726 181 IRAIKKKIRLSEAQQQKAGQQELKP-EQLEKLSKLEGWRNELKLLEEKK 228 (234)
Q Consensus 181 iRnLkKKLrqIE~Lk~k~~G~~L~~-eQleKl~k~~el~~EL~~Le~~l 228 (234)
.+.|-.|-|||+.|=...-|....+ +|+..| .+|..|++..+..+
T Consensus 63 a~dli~kakqIe~LIdsLPg~~~seeeQ~~ri---~~Le~E~~~~~~el 108 (151)
T 1yke_B 63 STDIILKTRQINKLIDSLPGVDVSAEEQLRKI---DMLQKKLVEVEDEK 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3556678899999987776666554 777765 45556666555443
No 9
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=19.80 E-value=2.1e+02 Score=21.39 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 026726 179 KRIRAIKKKI 188 (234)
Q Consensus 179 KkiRnLkKKL 188 (234)
-+|++|+++|
T Consensus 40 EqL~~LKkkl 49 (84)
T 1gmj_A 40 EQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3677788777
No 10
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=18.83 E-value=62 Score=21.58 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHHH
Q 026726 176 DIDKRIRAIKKKIR 189 (234)
Q Consensus 176 e~~KkiRnLkKKLr 189 (234)
-.+|.|-||+|||.
T Consensus 35 ylekeianlrkkie 48 (49)
T 3he5_A 35 YLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 35788889998874
Done!