Query 026727
Match_columns 234
No_of_seqs 164 out of 1186
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 11:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 9.5E-53 2.1E-57 360.8 23.5 207 9-217 1-211 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.8E-50 4E-55 341.9 21.4 209 5-217 8-222 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.3E-50 4.9E-55 335.3 18.5 187 9-218 3-196 (280)
4 KOG1577 Aldo/keto reductase fa 100.0 3.2E-48 7E-53 322.7 17.7 185 11-219 6-215 (300)
5 TIGR01293 Kv_beta voltage-depe 100.0 2.7E-47 5.8E-52 328.4 22.0 201 11-217 1-211 (317)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 3.7E-47 8E-52 331.0 23.0 210 5-218 9-229 (346)
7 cd06660 Aldo_ket_red Aldo-keto 100.0 2.4E-46 5.3E-51 317.7 22.7 200 11-218 1-205 (285)
8 PRK10625 tas putative aldo-ket 100.0 2.3E-46 4.9E-51 326.3 21.8 205 9-217 1-239 (346)
9 PLN02587 L-galactose dehydroge 100.0 5.8E-46 1.3E-50 319.8 21.2 200 11-218 1-211 (314)
10 PRK10376 putative oxidoreducta 100.0 1.4E-44 3E-49 307.9 23.7 202 11-217 9-218 (290)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.6E-44 1.6E-48 300.0 20.3 177 19-218 1-185 (267)
12 PRK14863 bifunctional regulato 100.0 1.9E-43 4.1E-48 300.8 17.9 186 18-218 2-198 (292)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.1E-43 8.8E-48 297.6 17.9 188 23-218 1-194 (283)
14 COG4989 Predicted oxidoreducta 100.0 4.3E-43 9.4E-48 281.5 14.0 206 9-218 1-215 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 4.5E-42 9.8E-47 290.3 19.7 182 11-218 6-193 (275)
16 COG1453 Predicted oxidoreducta 100.0 5.9E-42 1.3E-46 288.7 17.6 200 9-218 1-209 (391)
17 KOG1576 Predicted oxidoreducta 100.0 6E-39 1.3E-43 259.6 15.6 206 8-217 21-235 (342)
18 KOG3023 Glutamate-cysteine lig 98.4 5.1E-07 1.1E-11 73.1 6.5 70 142-212 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.0 2.9 6.3E-05 35.9 14.1 152 40-214 134-288 (316)
20 PF07021 MetW: Methionine bios 92.8 0.69 1.5E-05 37.0 7.6 149 46-218 5-172 (193)
21 PRK08392 hypothetical protein; 92.6 3.7 8E-05 33.3 12.0 146 43-209 15-178 (215)
22 TIGR02370 pyl_corrinoid methyl 91.6 2.4 5.2E-05 34.0 9.6 144 40-206 10-163 (197)
23 cd02070 corrinoid_protein_B12- 90.9 5.6 0.00012 31.9 11.1 152 40-214 9-174 (201)
24 PRK10550 tRNA-dihydrouridine s 90.7 10 0.00022 32.7 13.6 132 40-185 73-223 (312)
25 KOG0259 Tyrosine aminotransfer 89.6 12 0.00026 33.2 12.5 49 40-93 79-135 (447)
26 cd03174 DRE_TIM_metallolyase D 88.7 3.2 6.9E-05 34.4 8.4 104 107-212 16-135 (265)
27 COG0135 TrpF Phosphoribosylant 88.4 3 6.4E-05 33.9 7.7 77 121-205 19-96 (208)
28 PRK08609 hypothetical protein; 87.4 26 0.00056 33.0 14.5 150 43-209 350-522 (570)
29 cd03316 MR_like Mandelate race 87.2 19 0.00042 31.3 14.3 153 40-213 139-299 (357)
30 PRK13958 N-(5'-phosphoribosyl) 86.4 2.7 5.9E-05 34.0 6.5 67 119-187 16-83 (207)
31 COG2089 SpsE Sialic acid synth 84.7 22 0.00047 30.9 11.2 118 39-175 87-223 (347)
32 TIGR00735 hisF imidazoleglycer 84.3 16 0.00034 30.4 10.3 89 116-207 160-251 (254)
33 COG1748 LYS9 Saccharopine dehy 83.7 6.9 0.00015 34.9 8.2 83 40-139 77-159 (389)
34 COG1140 NarY Nitrate reductase 81.8 0.54 1.2E-05 41.2 0.5 52 156-207 264-316 (513)
35 cd00308 enolase_like Enolase-s 81.4 17 0.00036 29.6 9.3 86 128-217 120-208 (229)
36 cd03315 MLE_like Muconate lact 81.3 30 0.00065 28.8 15.9 153 40-214 85-240 (265)
37 cd04740 DHOD_1B_like Dihydroor 81.1 33 0.00071 29.1 13.7 151 40-207 100-286 (296)
38 cd02069 methionine_synthase_B1 80.9 28 0.0006 28.3 10.2 145 40-207 13-168 (213)
39 PRK01222 N-(5'-phosphoribosyl) 80.5 5 0.00011 32.6 5.7 65 121-187 20-85 (210)
40 PF03102 NeuB: NeuB family; I 80.5 13 0.00027 31.0 8.2 110 39-170 53-184 (241)
41 COG3172 NadR Predicted ATPase/ 80.3 7 0.00015 30.6 6.0 98 53-156 78-185 (187)
42 COG0635 HemN Coproporphyrinoge 80.3 16 0.00035 32.9 9.4 51 23-73 150-204 (416)
43 cd07944 DRE_TIM_HOA_like 4-hyd 78.0 27 0.00058 29.4 9.6 103 106-211 16-128 (266)
44 PRK05692 hydroxymethylglutaryl 77.8 9.7 0.00021 32.5 6.9 100 107-209 23-137 (287)
45 PRK07379 coproporphyrinogen II 77.4 15 0.00032 32.9 8.3 41 39-79 148-188 (400)
46 COG2069 CdhD CO dehydrogenase/ 76.7 48 0.001 28.6 10.4 93 117-214 157-260 (403)
47 PRK06294 coproporphyrinogen II 76.1 20 0.00043 31.7 8.7 27 107-134 167-193 (370)
48 PF04476 DUF556: Protein of un 76.0 44 0.00094 27.7 10.3 149 49-209 14-184 (235)
49 cd00739 DHPS DHPS subgroup of 75.7 24 0.00052 29.6 8.6 100 107-212 21-127 (257)
50 PF00682 HMGL-like: HMGL-like 75.5 24 0.00052 28.7 8.5 119 39-174 11-142 (237)
51 PLN02363 phosphoribosylanthran 75.3 10 0.00022 31.8 6.2 73 108-186 56-129 (256)
52 cd04731 HisF The cyclase subun 75.2 44 0.00096 27.4 11.0 85 118-205 156-243 (243)
53 cd07943 DRE_TIM_HOA 4-hydroxy- 74.9 34 0.00073 28.6 9.4 103 107-211 19-131 (263)
54 PRK00730 rnpA ribonuclease P; 73.2 24 0.00053 26.6 7.2 63 83-155 46-110 (138)
55 cd07943 DRE_TIM_HOA 4-hydroxy- 73.1 54 0.0012 27.4 15.1 24 39-62 19-42 (263)
56 PRK13803 bifunctional phosphor 72.9 21 0.00046 33.9 8.4 67 121-187 20-87 (610)
57 PRK13796 GTPase YqeH; Provisio 72.7 67 0.0015 28.3 13.0 119 39-170 54-175 (365)
58 PRK08195 4-hyroxy-2-oxovalerat 72.3 43 0.00094 29.2 9.7 102 105-211 20-134 (337)
59 PRK07945 hypothetical protein; 72.1 67 0.0015 28.0 16.2 151 41-209 110-288 (335)
60 cd00740 MeTr MeTr subgroup of 71.7 58 0.0013 27.2 10.3 100 107-213 23-127 (252)
61 TIGR03217 4OH_2_O_val_ald 4-hy 70.6 59 0.0013 28.4 10.1 101 106-211 20-133 (333)
62 cd03322 rpsA The starvation se 69.4 29 0.00062 30.5 8.0 81 128-212 189-272 (361)
63 PLN02746 hydroxymethylglutaryl 68.6 9.9 0.00022 33.4 4.9 95 110-209 67-179 (347)
64 TIGR00126 deoC deoxyribose-pho 67.9 63 0.0014 26.2 9.1 76 40-127 130-205 (211)
65 TIGR01430 aden_deam adenosine 67.9 78 0.0017 27.1 13.7 103 108-214 138-241 (324)
66 PRK09058 coproporphyrinogen II 67.9 25 0.00055 31.9 7.6 28 107-135 227-254 (449)
67 PRK13347 coproporphyrinogen II 67.6 25 0.00054 32.0 7.5 60 107-168 216-291 (453)
68 PRK02083 imidazole glycerol ph 66.6 73 0.0016 26.3 10.3 84 120-207 162-249 (253)
69 TIGR03822 AblA_like_2 lysine-2 66.6 86 0.0019 27.1 12.4 121 40-176 120-252 (321)
70 PF01904 DUF72: Protein of unk 66.4 71 0.0015 26.1 10.8 131 56-214 19-152 (230)
71 PRK05588 histidinol-phosphatas 66.3 74 0.0016 26.3 11.6 104 42-161 16-142 (255)
72 PF14871 GHL6: Hypothetical gl 66.3 14 0.00031 27.6 4.7 24 192-215 43-67 (132)
73 TIGR01496 DHPS dihydropteroate 66.0 79 0.0017 26.4 10.1 98 107-212 20-125 (257)
74 PRK00507 deoxyribose-phosphate 65.4 41 0.00088 27.5 7.6 76 39-126 133-208 (221)
75 TIGR00737 nifR3_yhdG putative 65.2 90 0.0019 26.8 13.5 133 40-186 73-222 (319)
76 TIGR02026 BchE magnesium-proto 65.1 64 0.0014 29.7 9.7 71 140-212 320-397 (497)
77 cd00423 Pterin_binding Pterin 64.7 82 0.0018 26.2 11.0 101 107-213 21-128 (258)
78 TIGR01502 B_methylAsp_ase meth 64.2 1.1E+02 0.0024 27.6 11.7 85 129-214 265-357 (408)
79 PRK09427 bifunctional indole-3 63.8 22 0.00049 32.4 6.3 64 120-187 273-337 (454)
80 PRK08599 coproporphyrinogen II 63.5 50 0.0011 29.1 8.4 26 107-133 164-189 (377)
81 PF00682 HMGL-like: HMGL-like 63.3 27 0.00059 28.4 6.3 101 107-214 11-129 (237)
82 PRK12928 lipoyl synthase; Prov 63.0 74 0.0016 27.2 9.1 75 140-215 185-281 (290)
83 cd07948 DRE_TIM_HCS Saccharomy 62.7 92 0.002 26.1 12.4 24 40-63 20-43 (262)
84 cd03314 MAL Methylaspartate am 62.7 94 0.002 27.6 9.9 83 130-212 229-319 (369)
85 cd00405 PRAI Phosphoribosylant 61.9 60 0.0013 25.8 8.0 46 119-171 68-113 (203)
86 COG0001 HemL Glutamate-1-semia 61.6 1.3E+02 0.0028 27.4 10.5 142 40-212 70-241 (432)
87 PRK05283 deoxyribose-phosphate 61.4 73 0.0016 26.8 8.5 79 40-129 144-227 (257)
88 TIGR02534 mucon_cyclo muconate 61.2 38 0.00083 29.7 7.3 67 146-212 227-296 (368)
89 PRK09061 D-glutamate deacylase 60.7 1.2E+02 0.0026 28.1 10.7 112 44-164 171-283 (509)
90 TIGR01928 menC_lowGC/arch o-su 60.6 46 0.001 28.7 7.6 83 128-214 198-283 (324)
91 cd04735 OYE_like_4_FMN Old yel 60.6 1.2E+02 0.0025 26.6 12.5 91 85-185 214-312 (353)
92 PRK08195 4-hyroxy-2-oxovalerat 60.3 1.2E+02 0.0025 26.5 15.5 24 39-62 22-45 (337)
93 PRK06015 keto-hydroxyglutarate 60.2 39 0.00084 27.3 6.5 85 109-210 15-102 (201)
94 PRK10415 tRNA-dihydrouridine s 59.9 1.2E+02 0.0025 26.3 12.6 135 40-186 75-224 (321)
95 PRK04452 acetyl-CoA decarbonyl 59.6 92 0.002 27.1 9.0 92 118-214 83-184 (319)
96 PRK05628 coproporphyrinogen II 59.5 83 0.0018 27.7 9.1 27 107-134 172-198 (375)
97 smart00642 Aamy Alpha-amylase 59.3 13 0.00028 28.9 3.5 20 195-214 72-92 (166)
98 PRK15072 bifunctional D-altron 59.3 76 0.0017 28.4 8.9 82 128-213 232-316 (404)
99 COG2256 MGS1 ATPase related to 58.0 60 0.0013 29.3 7.7 104 46-168 37-143 (436)
100 TIGR02090 LEU1_arch isopropylm 58.0 1.2E+02 0.0026 26.7 9.8 26 39-64 19-44 (363)
101 cd03323 D-glucarate_dehydratas 58.0 1.4E+02 0.003 26.7 15.5 150 40-214 168-321 (395)
102 cd03321 mandelate_racemase Man 57.7 1.3E+02 0.0028 26.2 13.6 151 41-212 142-295 (355)
103 cd03318 MLE Muconate Lactonizi 57.4 1.3E+02 0.0029 26.2 13.4 79 129-211 215-296 (365)
104 cd01320 ADA Adenosine deaminas 57.2 1.2E+02 0.0027 25.8 14.0 101 109-213 140-241 (325)
105 cd02930 DCR_FMN 2,4-dienoyl-Co 56.9 1.4E+02 0.0029 26.2 13.3 98 83-185 201-305 (353)
106 cd07944 DRE_TIM_HOA_like 4-hyd 56.8 1.2E+02 0.0026 25.5 15.2 24 40-63 18-41 (266)
107 PLN02428 lipoic acid synthase 56.6 84 0.0018 27.7 8.4 74 141-215 229-324 (349)
108 TIGR01182 eda Entner-Doudoroff 56.6 49 0.0011 26.7 6.5 85 109-210 19-106 (204)
109 cd07939 DRE_TIM_NifV Streptomy 56.5 1.2E+02 0.0025 25.3 10.4 103 107-218 17-135 (259)
110 PRK07259 dihydroorotate dehydr 56.2 1.3E+02 0.0027 25.6 10.8 153 40-207 102-289 (301)
111 COG0502 BioB Biotin synthase a 56.2 1.4E+02 0.003 26.2 9.5 133 39-192 84-233 (335)
112 TIGR00190 thiC thiamine biosyn 55.8 58 0.0012 29.2 7.2 106 40-165 75-182 (423)
113 PF05690 ThiG: Thiazole biosyn 55.8 92 0.002 25.9 7.9 168 21-212 8-182 (247)
114 PRK07003 DNA polymerase III su 55.8 2.2E+02 0.0047 28.2 11.8 94 108-207 100-196 (830)
115 cd04747 OYE_like_5_FMN Old yel 55.8 1.5E+02 0.0032 26.3 14.0 143 39-185 134-327 (361)
116 cd02803 OYE_like_FMN_family Ol 55.7 1.3E+02 0.0029 25.7 14.0 94 84-185 206-310 (327)
117 PRK06740 histidinol-phosphatas 55.6 1.4E+02 0.003 26.0 14.8 94 115-209 157-288 (331)
118 PRK14017 galactonate dehydrata 55.5 1.2E+02 0.0025 26.9 9.4 82 128-213 203-287 (382)
119 PRK05414 urocanate hydratase; 54.8 36 0.00079 31.4 5.9 118 46-177 116-254 (556)
120 TIGR01228 hutU urocanate hydra 53.8 36 0.00079 31.3 5.8 118 46-177 107-245 (545)
121 COG2949 SanA Uncharacterized m 53.7 1.2E+02 0.0027 24.7 8.7 98 111-214 77-182 (235)
122 TIGR03471 HpnJ hopanoid biosyn 53.4 1.6E+02 0.0034 26.9 10.1 93 115-209 288-395 (472)
123 PLN00191 enolase 52.9 1.5E+02 0.0033 27.1 9.8 96 107-211 295-394 (457)
124 PF13378 MR_MLE_C: Enolase C-t 52.8 17 0.00037 25.8 3.0 50 164-213 3-54 (111)
125 PRK08776 cystathionine gamma-s 51.9 92 0.002 27.9 8.2 85 129-217 100-187 (405)
126 TIGR00676 fadh2 5,10-methylene 51.6 1.5E+02 0.0032 25.0 12.0 148 42-207 15-184 (272)
127 PF01207 Dus: Dihydrouridine s 51.6 76 0.0016 27.3 7.4 133 40-185 64-212 (309)
128 COG3623 SgaU Putative L-xylulo 51.5 95 0.0021 25.9 7.3 76 16-94 65-156 (287)
129 TIGR00538 hemN oxygen-independ 51.2 88 0.0019 28.4 8.1 60 107-168 215-290 (455)
130 TIGR03822 AblA_like_2 lysine-2 51.2 1.6E+02 0.0035 25.4 11.9 87 131-217 140-239 (321)
131 PRK12331 oxaloacetate decarbox 51.1 93 0.002 28.4 8.1 102 107-210 23-141 (448)
132 COG4464 CapC Capsular polysacc 50.9 1.4E+02 0.003 24.6 9.0 40 40-80 18-60 (254)
133 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.4 1.5E+02 0.0033 24.9 15.2 25 39-63 18-42 (275)
134 PRK07535 methyltetrahydrofolat 50.4 1.5E+02 0.0033 24.8 9.6 98 108-212 23-123 (261)
135 cd02932 OYE_YqiM_FMN Old yello 50.2 1.7E+02 0.0037 25.3 13.3 100 78-185 213-319 (336)
136 TIGR02660 nifV_homocitr homoci 49.9 1.8E+02 0.0039 25.6 9.6 103 107-218 20-138 (365)
137 PF01175 Urocanase: Urocanase; 49.9 59 0.0013 30.1 6.5 127 46-186 106-256 (546)
138 PRK00077 eno enolase; Provisio 49.6 2E+02 0.0043 26.0 10.9 95 107-210 261-361 (425)
139 COG1801 Uncharacterized conser 49.3 1.6E+02 0.0035 24.8 11.6 107 23-139 4-115 (263)
140 PF02679 ComA: (2R)-phospho-3- 49.2 35 0.00075 28.5 4.6 86 42-136 84-169 (244)
141 cd04734 OYE_like_3_FMN Old yel 49.0 1.8E+02 0.0039 25.3 14.8 96 83-185 205-314 (343)
142 PRK08255 salicylyl-CoA 5-hydro 48.9 2.7E+02 0.0058 27.3 14.0 162 39-213 541-743 (765)
143 PRK02227 hypothetical protein; 48.9 1.6E+02 0.0034 24.5 9.4 152 40-207 9-181 (238)
144 TIGR02026 BchE magnesium-proto 48.8 2.2E+02 0.0048 26.2 11.1 47 107-156 222-268 (497)
145 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.5 78 0.0017 26.7 6.8 96 107-210 18-136 (275)
146 PTZ00081 enolase; Provisional 48.4 2.2E+02 0.0047 26.0 10.4 95 107-210 281-381 (439)
147 TIGR01927 menC_gamma/gm+ o-suc 48.4 1.7E+02 0.0038 25.0 9.4 81 128-214 183-266 (307)
148 TIGR03217 4OH_2_O_val_ald 4-hy 48.3 1.9E+02 0.004 25.3 15.6 24 39-62 21-44 (333)
149 PRK13352 thiamine biosynthesis 47.6 88 0.0019 28.2 7.1 48 106-166 139-186 (431)
150 TIGR00048 radical SAM enzyme, 47.4 74 0.0016 28.0 6.7 84 131-214 219-331 (355)
151 TIGR00035 asp_race aspartate r 47.0 1.6E+02 0.0034 24.0 9.3 63 107-170 14-88 (229)
152 PF01081 Aldolase: KDPG and KH 46.6 42 0.00092 26.9 4.7 79 116-210 25-106 (196)
153 PRK02901 O-succinylbenzoate sy 46.4 2E+02 0.0043 25.0 9.9 67 146-214 173-241 (327)
154 cd03317 NAAAR N-acylamino acid 46.4 1.3E+02 0.0028 26.2 8.1 82 128-213 203-287 (354)
155 COG0042 tRNA-dihydrouridine sy 46.4 2E+02 0.0043 25.0 11.5 132 40-185 77-227 (323)
156 cd07948 DRE_TIM_HCS Saccharomy 46.3 1.1E+02 0.0025 25.5 7.5 97 107-211 19-131 (262)
157 PF00697 PRAI: N-(5'phosphorib 46.2 22 0.00047 28.4 3.0 66 119-188 14-80 (197)
158 COG4992 ArgD Ornithine/acetylo 45.8 1.4E+02 0.0031 26.8 8.1 45 168-212 174-225 (404)
159 KOG1549 Cysteine desulfurase N 45.4 2.4E+02 0.0052 25.6 10.3 85 129-218 133-224 (428)
160 PRK06552 keto-hydroxyglutarate 45.3 93 0.002 25.3 6.5 59 144-210 50-114 (213)
161 TIGR03247 glucar-dehydr glucar 45.1 2.4E+02 0.0052 25.6 13.9 83 130-212 252-336 (441)
162 PRK15440 L-rhamnonate dehydrat 44.8 81 0.0018 28.2 6.7 67 145-211 247-318 (394)
163 PRK09249 coproporphyrinogen II 44.7 96 0.0021 28.2 7.3 60 107-168 215-290 (453)
164 cd03325 D-galactonate_dehydrat 44.5 2.1E+02 0.0047 24.9 15.5 153 40-212 123-285 (352)
165 TIGR00677 fadh2_euk methylenet 44.4 2E+02 0.0043 24.4 12.3 150 41-207 15-188 (281)
166 TIGR01060 eno phosphopyruvate 44.3 2.4E+02 0.0053 25.4 11.0 96 107-211 262-363 (425)
167 PRK04390 rnpA ribonuclease P; 44.1 1.2E+02 0.0027 22.0 7.2 65 82-155 43-110 (120)
168 TIGR00126 deoC deoxyribose-pho 43.9 1.7E+02 0.0038 23.7 10.0 135 38-189 14-157 (211)
169 PRK14461 ribosomal RNA large s 43.8 2.4E+02 0.0051 25.2 9.8 84 131-214 232-350 (371)
170 TIGR00973 leuA_bact 2-isopropy 43.8 2.2E+02 0.0049 26.3 9.5 24 40-63 21-44 (494)
171 cd04728 ThiG Thiazole synthase 43.5 1.9E+02 0.0042 24.1 12.2 107 106-214 72-184 (248)
172 KOG0258 Alanine aminotransfera 43.5 80 0.0017 28.4 6.1 48 118-165 176-223 (475)
173 cd02801 DUS_like_FMN Dihydrour 43.4 1.7E+02 0.0037 23.4 10.5 137 40-189 65-216 (231)
174 COG1751 Uncharacterized conser 43.3 98 0.0021 24.0 5.8 73 40-126 12-85 (186)
175 COG2987 HutU Urocanate hydrata 43.3 66 0.0014 29.4 5.6 157 6-177 84-254 (561)
176 PRK03031 rnpA ribonuclease P; 43.2 1.3E+02 0.0028 22.0 6.9 65 82-155 46-114 (122)
177 PF02679 ComA: (2R)-phospho-3- 42.9 27 0.00059 29.0 3.1 97 113-210 24-131 (244)
178 PRK15108 biotin synthase; Prov 42.7 2.3E+02 0.005 24.7 11.7 105 39-159 76-187 (345)
179 cd02067 B12-binding B12 bindin 42.6 1.2E+02 0.0027 21.5 7.8 10 156-165 49-58 (119)
180 cd07939 DRE_TIM_NifV Streptomy 42.5 2E+02 0.0043 23.9 13.6 24 40-63 18-41 (259)
181 PF01118 Semialdhyde_dh: Semia 42.5 40 0.00086 24.4 3.7 28 40-67 75-102 (121)
182 cd04742 NPD_FabD 2-Nitropropan 42.5 1.2E+02 0.0027 27.4 7.4 87 120-213 7-103 (418)
183 COG1751 Uncharacterized conser 42.2 1.6E+02 0.0035 22.8 7.0 88 132-220 3-98 (186)
184 cd02933 OYE_like_FMN Old yello 42.1 2.3E+02 0.0051 24.6 14.7 94 88-185 220-313 (338)
185 PLN02540 methylenetetrahydrofo 42.1 3.1E+02 0.0067 26.0 14.0 149 42-207 15-196 (565)
186 TIGR01278 DPOR_BchB light-inde 42.0 2.9E+02 0.0062 25.6 10.3 101 71-185 69-194 (511)
187 TIGR01290 nifB nitrogenase cof 41.2 2.8E+02 0.0061 25.2 10.8 109 106-217 59-199 (442)
188 cd07940 DRE_TIM_IPMS 2-isoprop 41.0 2.1E+02 0.0046 23.8 8.8 102 107-217 17-138 (268)
189 cd03320 OSBS o-Succinylbenzoat 41.0 1.8E+02 0.0038 24.2 7.8 82 128-214 153-236 (263)
190 PF09989 DUF2229: CoA enzyme a 41.0 1.1E+02 0.0024 24.9 6.4 26 186-211 192-218 (221)
191 cd02742 GH20_hexosaminidase Be 40.9 30 0.00065 29.6 3.2 15 196-210 75-90 (303)
192 PLN03228 methylthioalkylmalate 40.7 1.2E+02 0.0025 28.3 7.1 109 106-218 102-235 (503)
193 PRK14459 ribosomal RNA large s 40.7 1.7E+02 0.0038 26.0 8.0 84 131-214 242-357 (373)
194 PRK09358 adenosine deaminase; 40.6 2.4E+02 0.0052 24.3 13.9 103 109-214 148-251 (340)
195 TIGR03699 mena_SCO4550 menaqui 40.5 2.4E+02 0.0052 24.3 9.4 120 39-173 72-214 (340)
196 PRK11858 aksA trans-homoaconit 40.1 2.7E+02 0.0058 24.7 12.1 24 40-63 24-47 (378)
197 cd00248 Mth938-like Mth938-lik 40.0 98 0.0021 22.1 5.3 51 163-213 36-87 (109)
198 PRK08446 coproporphyrinogen II 39.1 89 0.0019 27.3 6.0 25 108-133 163-187 (350)
199 cd08556 GDPD Glycerophosphodie 39.0 1.7E+02 0.0038 22.2 9.5 130 40-213 11-168 (189)
200 PRK00164 moaA molybdenum cofac 38.8 2.5E+02 0.0054 24.0 16.4 151 39-210 49-228 (331)
201 PF05368 NmrA: NmrA-like famil 38.6 99 0.0021 24.8 5.9 84 127-218 22-107 (233)
202 TIGR03849 arch_ComA phosphosul 38.3 93 0.002 25.8 5.5 95 113-209 11-117 (237)
203 PRK08123 histidinol-phosphatas 38.2 2.4E+02 0.0051 23.6 11.9 23 43-65 20-42 (270)
204 PF07994 NAD_binding_5: Myo-in 37.8 1.1E+02 0.0024 26.3 6.1 92 109-210 131-230 (295)
205 PRK00499 rnpA ribonuclease P; 37.8 1.5E+02 0.0033 21.2 6.9 64 82-155 37-104 (114)
206 PRK00208 thiG thiazole synthas 37.6 2.5E+02 0.0053 23.6 12.2 107 106-214 72-184 (250)
207 cd03329 MR_like_4 Mandelate ra 37.2 2.9E+02 0.0062 24.2 15.0 150 40-212 143-299 (368)
208 COG4626 Phage terminase-like p 36.9 1.4E+02 0.0031 27.9 7.0 72 140-214 410-485 (546)
209 cd07938 DRE_TIM_HMGL 3-hydroxy 36.4 1.1E+02 0.0023 25.9 5.8 94 111-209 20-131 (274)
210 PF08013 Tagatose_6_P_K: Tagat 36.3 45 0.00098 30.0 3.6 49 17-66 78-133 (424)
211 PRK06256 biotin synthase; Vali 36.2 2.8E+02 0.0061 23.8 10.6 118 39-174 91-221 (336)
212 COG1131 CcmA ABC-type multidru 36.1 2.4E+02 0.0053 23.9 8.0 63 111-176 140-205 (293)
213 PRK02399 hypothetical protein; 35.7 1.9E+02 0.0042 26.0 7.4 50 114-171 199-248 (406)
214 TIGR02814 pfaD_fam PfaD family 35.7 1.7E+02 0.0036 26.8 7.2 63 151-214 38-109 (444)
215 TIGR03569 NeuB_NnaB N-acetylne 35.7 3E+02 0.0065 24.0 12.5 113 39-171 73-207 (329)
216 PRK11858 aksA trans-homoaconit 35.5 2.9E+02 0.0063 24.4 8.7 100 106-213 22-137 (378)
217 PF09370 TIM-br_sig_trns: TIM- 35.4 37 0.00079 28.7 2.7 53 109-168 65-117 (268)
218 TIGR02351 thiH thiazole biosyn 35.2 3.1E+02 0.0068 24.1 9.6 101 39-157 103-215 (366)
219 COG0820 Predicted Fe-S-cluster 34.3 3.3E+02 0.0071 24.1 8.5 83 131-214 216-328 (349)
220 cd03327 MR_like_2 Mandelate ra 34.2 3.1E+02 0.0067 23.7 14.7 152 40-212 120-280 (341)
221 PRK14041 oxaloacetate decarbox 34.1 1.8E+02 0.0039 26.8 7.2 97 107-209 22-139 (467)
222 PRK01313 rnpA ribonuclease P; 34.1 2E+02 0.0043 21.4 7.0 62 83-154 47-113 (129)
223 cd03313 enolase Enolase: Enola 33.9 3.5E+02 0.0076 24.3 10.7 95 107-210 261-361 (408)
224 PRK04820 rnpA ribonuclease P; 33.8 2.1E+02 0.0046 21.7 7.3 64 83-155 48-114 (145)
225 PRK08247 cystathionine gamma-s 33.8 1.9E+02 0.0042 25.2 7.3 57 158-214 116-175 (366)
226 PRK09389 (R)-citramalate synth 33.8 3.5E+02 0.0075 25.0 9.1 26 39-64 21-46 (488)
227 PF14606 Lipase_GDSL_3: GDSL-l 33.5 2.4E+02 0.0052 22.3 7.9 109 18-137 33-146 (178)
228 cd01974 Nitrogenase_MoFe_beta 33.5 3.6E+02 0.0078 24.3 9.1 109 62-184 64-192 (435)
229 COG2159 Predicted metal-depend 33.4 2.7E+02 0.0059 23.7 7.9 90 120-211 55-163 (293)
230 TIGR02660 nifV_homocitr homoci 33.2 3.4E+02 0.0073 23.9 10.5 24 39-62 20-43 (365)
231 PRK07328 histidinol-phosphatas 33.1 2.9E+02 0.0062 23.0 16.7 153 43-209 19-225 (269)
232 KOG0741 AAA+-type ATPase [Post 33.0 2.3E+02 0.0051 26.8 7.6 138 41-191 227-402 (744)
233 smart00148 PLCXc Phospholipase 33.0 2E+02 0.0043 21.3 6.3 68 45-121 31-115 (135)
234 PTZ00413 lipoate synthase; Pro 32.6 3.7E+02 0.008 24.2 11.3 159 38-215 176-372 (398)
235 PRK12558 glutamyl-tRNA synthet 32.6 1.1E+02 0.0024 28.0 5.5 59 107-173 48-106 (445)
236 TIGR00262 trpA tryptophan synt 32.4 3E+02 0.0064 23.0 9.1 70 142-214 71-150 (256)
237 PHA02128 hypothetical protein 32.2 1.9E+02 0.0042 20.8 5.6 69 143-211 60-150 (151)
238 PRK03459 rnpA ribonuclease P; 32.2 2E+02 0.0044 21.0 7.0 64 82-155 47-114 (122)
239 PRK10605 N-ethylmaleimide redu 32.0 3.6E+02 0.0077 23.8 15.3 154 39-204 149-336 (362)
240 PF05049 IIGP: Interferon-indu 31.9 1.1E+02 0.0024 27.3 5.3 84 53-139 109-202 (376)
241 PRK11267 biopolymer transport 31.8 1.7E+02 0.0036 21.9 5.7 54 107-165 81-134 (141)
242 COG0218 Predicted GTPase [Gene 31.8 2.8E+02 0.006 22.4 9.1 100 42-155 91-198 (200)
243 PRK05968 hypothetical protein; 31.4 2.5E+02 0.0053 24.9 7.6 48 167-214 137-186 (389)
244 PRK15052 D-tagatose-1,6-bispho 31.1 91 0.002 28.1 4.6 49 17-66 75-130 (421)
245 TIGR01660 narH nitrate reducta 31.0 19 0.00042 32.8 0.5 52 156-207 264-316 (492)
246 KOG0173 20S proteasome, regula 30.8 51 0.0011 27.5 2.8 23 34-56 178-200 (271)
247 cd08583 PI-PLCc_GDPD_SF_unchar 30.8 2.9E+02 0.0063 22.4 9.2 22 40-61 13-34 (237)
248 PRK05339 PEP synthetase regula 30.6 2.9E+02 0.0062 23.5 7.3 73 41-131 15-90 (269)
249 PRK14455 ribosomal RNA large s 30.5 3.7E+02 0.0081 23.6 8.4 74 141-214 244-335 (356)
250 cd08557 PI-PLCc_bacteria_like 30.4 1.2E+02 0.0026 24.9 5.2 20 46-65 41-60 (271)
251 PRK09454 ugpQ cytoplasmic glyc 29.9 2.9E+02 0.0063 22.6 7.4 22 40-61 20-41 (249)
252 COG0626 MetC Cystathionine bet 29.8 3.1E+02 0.0068 24.6 7.8 76 142-217 112-191 (396)
253 PF06506 PrpR_N: Propionate ca 29.8 53 0.0012 25.5 2.8 98 112-214 19-134 (176)
254 PRK13361 molybdenum cofactor b 29.7 3.6E+02 0.0079 23.2 15.0 131 39-190 45-194 (329)
255 TIGR00284 dihydropteroate synt 29.7 4.6E+02 0.01 24.4 9.2 92 110-211 165-257 (499)
256 cd08590 PI-PLCc_Rv2075c_like C 29.6 2.4E+02 0.0053 23.7 6.8 18 144-161 150-167 (267)
257 cd08570 GDPD_YPL206cp_fungi Gl 29.6 3E+02 0.0066 22.2 9.3 22 40-61 11-32 (234)
258 COG1210 GalU UDP-glucose pyrop 29.5 68 0.0015 27.3 3.4 39 20-58 8-52 (291)
259 PRK08208 coproporphyrinogen II 29.5 1.3E+02 0.0027 27.2 5.4 27 107-134 205-231 (430)
260 PRK10551 phage resistance prot 29.2 4.7E+02 0.01 24.3 9.4 115 86-213 349-475 (518)
261 COG2022 ThiG Uncharacterized e 29.1 2.9E+02 0.0062 23.1 6.8 70 106-176 79-149 (262)
262 COG4670 Acyl CoA:acetate/3-ket 29.1 1.8E+02 0.0038 26.9 6.1 49 107-159 30-78 (527)
263 TIGR00742 yjbN tRNA dihydrouri 29.0 3.8E+02 0.0083 23.2 11.4 134 40-185 65-222 (318)
264 TIGR00381 cdhD CO dehydrogenas 28.9 4.3E+02 0.0093 23.7 11.7 97 110-214 128-249 (389)
265 TIGR00539 hemN_rel putative ox 28.9 1.7E+02 0.0036 25.6 6.0 42 39-80 133-174 (360)
266 PRK05660 HemN family oxidoredu 28.8 1.4E+02 0.003 26.4 5.5 60 21-80 118-181 (378)
267 PRK11024 colicin uptake protei 28.6 1.8E+02 0.004 21.6 5.5 53 107-164 85-137 (141)
268 COG2896 MoaA Molybdenum cofact 28.6 3.3E+02 0.0071 23.8 7.5 114 39-177 43-175 (322)
269 PRK14465 ribosomal RNA large s 28.4 4.1E+02 0.0089 23.3 9.1 86 131-216 216-329 (342)
270 TIGR01428 HAD_type_II 2-haloal 28.4 1.3E+02 0.0027 23.5 4.8 64 112-177 61-128 (198)
271 PF00289 CPSase_L_chain: Carba 28.2 73 0.0016 22.9 3.0 90 110-212 11-106 (110)
272 PF00809 Pterin_bind: Pterin b 28.2 2.4E+02 0.0051 22.6 6.4 91 120-214 28-125 (210)
273 PRK08133 O-succinylhomoserine 28.0 3.2E+02 0.0069 24.2 7.7 47 166-212 134-183 (390)
274 PRK01492 rnpA ribonuclease P; 28.0 2.4E+02 0.0052 20.5 7.0 61 84-153 47-114 (118)
275 PRK15458 tagatose 6-phosphate 27.8 1.1E+02 0.0024 27.7 4.6 49 17-66 78-133 (426)
276 TIGR01329 cysta_beta_ly_E cyst 27.8 3.5E+02 0.0077 23.8 7.9 50 166-215 119-171 (378)
277 PRK04165 acetyl-CoA decarbonyl 27.6 4.8E+02 0.01 23.9 10.9 98 107-213 102-209 (450)
278 PRK00912 ribonuclease P protei 27.6 3.4E+02 0.0073 22.1 10.4 139 41-209 15-171 (237)
279 PF08671 SinI: Anti-repressor 27.5 76 0.0016 17.2 2.3 16 42-57 3-18 (30)
280 TIGR03849 arch_ComA phosphosul 27.4 3.6E+02 0.0078 22.4 7.6 85 42-135 71-155 (237)
281 PLN02389 biotin synthase 27.4 4.4E+02 0.0096 23.4 10.9 102 39-157 116-227 (379)
282 TIGR02810 agaZ_gatZ D-tagatose 27.3 1.2E+02 0.0026 27.4 4.7 49 17-66 74-129 (420)
283 smart00052 EAL Putative diguan 27.2 2.3E+02 0.005 22.4 6.3 100 110-213 99-211 (241)
284 PRK07994 DNA polymerase III su 27.0 5.8E+02 0.013 24.6 12.3 93 109-207 101-196 (647)
285 PF01053 Cys_Met_Meta_PP: Cys/ 26.8 2.5E+02 0.0054 25.1 6.7 76 142-217 104-183 (386)
286 cd06564 GH20_DspB_LnbB-like Gl 26.8 87 0.0019 27.1 3.8 45 166-210 14-100 (326)
287 PRK09536 btuD corrinoid ABC tr 26.8 2.1E+02 0.0045 25.7 6.2 72 145-216 279-351 (402)
288 PRK01903 rnpA ribonuclease P; 26.5 2.7E+02 0.006 20.7 6.8 47 108-154 66-128 (133)
289 PRK14040 oxaloacetate decarbox 26.5 3.3E+02 0.0071 26.0 7.7 98 107-208 24-140 (593)
290 KOG0693 Myo-inositol-1-phospha 26.5 3E+02 0.0064 24.6 6.8 105 109-218 206-311 (512)
291 PF00072 Response_reg: Respons 26.4 2.1E+02 0.0045 19.3 6.0 60 121-183 37-98 (112)
292 COG2874 FlaH Predicted ATPases 26.4 3.7E+02 0.0081 22.2 9.0 138 12-165 19-167 (235)
293 TIGR01163 rpe ribulose-phospha 26.3 3.2E+02 0.0069 21.4 9.1 96 108-207 9-105 (210)
294 PRK08248 O-acetylhomoserine am 26.3 3.9E+02 0.0085 24.1 8.1 50 165-214 136-188 (431)
295 PRK13397 3-deoxy-7-phosphohept 26.3 2.8E+02 0.006 23.2 6.5 96 108-213 27-130 (250)
296 COG4943 Predicted signal trans 26.2 3.8E+02 0.0082 24.9 7.7 130 71-212 340-478 (524)
297 PF00388 PI-PLC-X: Phosphatidy 26.0 49 0.0011 24.8 1.9 16 46-61 30-45 (146)
298 cd00405 PRAI Phosphoribosylant 25.9 2E+02 0.0043 22.7 5.6 66 121-188 16-82 (203)
299 cd02810 DHOD_DHPD_FMN Dihydroo 25.9 3.9E+02 0.0085 22.3 12.1 131 40-185 109-271 (289)
300 PLN02321 2-isopropylmalate syn 25.9 2E+02 0.0043 27.6 6.2 106 113-221 110-239 (632)
301 cd00814 MetRS_core catalytic c 25.9 1.1E+02 0.0024 26.2 4.3 47 109-158 68-114 (319)
302 PF07476 MAAL_C: Methylasparta 25.8 3.9E+02 0.0084 22.2 7.1 98 107-209 86-193 (248)
303 PRK08207 coproporphyrinogen II 25.8 2.1E+02 0.0046 26.4 6.2 69 21-89 280-355 (488)
304 PRK12581 oxaloacetate decarbox 25.8 5.3E+02 0.012 23.8 14.8 151 40-207 103-263 (468)
305 PF10171 DUF2366: Uncharacteri 25.8 1.5E+02 0.0032 23.4 4.5 37 128-164 78-114 (173)
306 cd06568 GH20_SpHex_like A subg 25.7 90 0.002 27.1 3.7 45 166-210 15-93 (329)
307 COG2200 Rtn c-di-GMP phosphodi 25.6 3.9E+02 0.0083 22.1 8.5 129 72-213 69-214 (256)
308 cd03770 SR_TndX_transposase Se 25.5 1.5E+02 0.0033 21.9 4.5 50 114-163 55-105 (140)
309 cd05560 Xcc1710_like Xcc1710_l 25.4 2.4E+02 0.0052 20.1 5.3 50 163-213 37-87 (109)
310 PRK11613 folP dihydropteroate 25.4 4.3E+02 0.0092 22.5 8.5 98 108-212 36-140 (282)
311 KOG1579 Homocysteine S-methylt 25.3 4.5E+02 0.0098 22.8 12.8 173 40-217 51-260 (317)
312 cd08568 GDPD_TmGDE_like Glycer 25.3 2.6E+02 0.0055 22.5 6.2 22 40-61 12-33 (226)
313 cd05125 Mth938_2P1-like Mth938 25.1 2.4E+02 0.0052 20.4 5.3 48 166-213 40-89 (114)
314 PRK14453 chloramphenicol/florf 25.1 4.7E+02 0.01 22.9 9.9 89 126-214 203-328 (347)
315 cd00668 Ile_Leu_Val_MetRS_core 24.9 1.2E+02 0.0025 26.0 4.2 49 109-160 81-131 (312)
316 TIGR00044 pyridoxal phosphate 24.9 3.8E+02 0.0082 21.7 7.5 53 109-167 8-60 (229)
317 KOG0059 Lipid exporter ABCA1 a 24.8 3E+02 0.0065 27.5 7.5 69 107-177 670-767 (885)
318 COG4130 Predicted sugar epimer 24.8 2E+02 0.0043 23.7 5.1 51 167-217 50-108 (272)
319 PF07302 AroM: AroM protein; 24.8 3.9E+02 0.0085 21.9 14.4 162 40-215 11-188 (221)
320 COG1168 MalY Bifunctional PLP- 24.7 1.4E+02 0.003 26.6 4.6 145 40-218 39-208 (388)
321 PRK05799 coproporphyrinogen II 24.7 1.9E+02 0.0041 25.4 5.6 41 40-80 133-173 (374)
322 PF06792 UPF0261: Uncharacteri 24.6 4.4E+02 0.0095 23.8 7.8 97 116-232 200-301 (403)
323 TIGR00977 LeuA_rel 2-isopropyl 24.6 5.9E+02 0.013 23.8 10.8 28 39-66 20-48 (526)
324 COG2355 Zn-dependent dipeptida 24.4 4.7E+02 0.01 22.7 8.3 107 42-165 149-260 (313)
325 PRK02261 methylaspartate mutas 24.4 3E+02 0.0066 20.5 8.7 43 114-166 21-63 (137)
326 PRK07671 cystathionine beta-ly 24.4 4E+02 0.0087 23.4 7.7 49 166-214 122-173 (377)
327 PRK14466 ribosomal RNA large s 24.2 5E+02 0.011 22.9 9.7 85 130-214 210-323 (345)
328 PRK07094 biotin synthase; Prov 24.2 4.5E+02 0.0097 22.4 12.4 115 40-176 71-202 (323)
329 cd07938 DRE_TIM_HMGL 3-hydroxy 24.1 4.3E+02 0.0094 22.2 11.2 24 40-63 18-41 (274)
330 COG0710 AroD 3-dehydroquinate 24.1 4.1E+02 0.009 21.9 14.2 85 40-130 12-98 (231)
331 TIGR03278 methan_mark_10 putat 24.1 5.3E+02 0.012 23.2 11.7 83 107-191 54-140 (404)
332 TIGR03586 PseI pseudaminic aci 24.0 4.9E+02 0.011 22.7 12.2 111 39-170 74-205 (327)
333 PF01791 DeoC: DeoC/LacD famil 24.0 3.5E+02 0.0076 21.9 6.8 129 43-188 20-168 (236)
334 PF04430 DUF498: Protein of un 23.9 1.3E+02 0.0028 21.4 3.7 48 166-213 39-88 (110)
335 cd03324 rTSbeta_L-fuconate_deh 23.7 5.4E+02 0.012 23.1 14.7 151 40-212 196-352 (415)
336 COG0422 ThiC Thiamine biosynth 23.6 5.4E+02 0.012 23.1 8.2 106 40-165 76-183 (432)
337 PF13552 DUF4127: Protein of u 23.6 6E+02 0.013 23.6 12.9 148 40-193 210-385 (497)
338 PRK08084 DNA replication initi 23.6 1.2E+02 0.0026 24.7 3.9 45 127-171 97-145 (235)
339 PRK05718 keto-hydroxyglutarate 23.5 3.8E+02 0.0083 21.7 6.7 57 145-209 53-112 (212)
340 COG2062 SixA Phosphohistidine 23.4 3.6E+02 0.0078 21.0 7.2 77 73-170 35-113 (163)
341 TIGR03820 lys_2_3_AblA lysine- 23.3 5.7E+02 0.012 23.2 10.6 101 39-156 138-245 (417)
342 PF11987 IF-2: Translation-ini 23.2 2.2E+02 0.0047 20.4 4.7 51 157-213 47-98 (108)
343 PRK05904 coproporphyrinogen II 23.2 1.8E+02 0.0039 25.5 5.1 25 108-133 168-192 (353)
344 PF03599 CdhD: CO dehydrogenas 23.2 5.5E+02 0.012 23.0 8.5 81 127-214 69-153 (386)
345 PRK00396 rnpA ribonuclease P; 23.1 3.2E+02 0.0069 20.3 6.7 64 82-155 45-112 (130)
346 PRK00915 2-isopropylmalate syn 23.0 6.2E+02 0.013 23.5 14.2 133 40-176 24-185 (513)
347 cd03326 MR_like_1 Mandelate ra 23.0 5.4E+02 0.012 22.8 13.8 153 40-213 160-319 (385)
348 PLN02438 inositol-3-phosphate 23.0 5.1E+02 0.011 24.2 7.9 50 109-158 206-259 (510)
349 PRK12323 DNA polymerase III su 22.9 3.3E+02 0.0071 26.5 7.0 94 108-207 105-201 (700)
350 PRK01732 rnpA ribonuclease P; 22.9 3E+02 0.0064 19.8 6.9 64 82-155 44-111 (114)
351 KOG2264 Exostosin EXT1L [Signa 22.8 2.5E+02 0.0055 26.6 6.0 54 69-138 632-687 (907)
352 PRK14040 oxaloacetate decarbox 22.8 6.7E+02 0.015 23.9 14.3 23 39-61 24-46 (593)
353 PRK08099 bifunctional DNA-bind 22.8 5.4E+02 0.012 23.0 8.2 95 54-154 291-395 (399)
354 TIGR03597 GTPase_YqeH ribosome 22.7 5.2E+02 0.011 22.6 11.8 119 39-170 48-169 (360)
355 PRK09613 thiH thiamine biosynt 22.6 6.1E+02 0.013 23.3 10.6 173 40-214 29-241 (469)
356 cd07940 DRE_TIM_IPMS 2-isoprop 22.5 4.5E+02 0.0098 21.8 14.5 27 39-65 17-43 (268)
357 PRK06176 cystathionine gamma-s 22.5 4.2E+02 0.009 23.4 7.4 49 166-214 122-173 (380)
358 KOG2733 Uncharacterized membra 22.5 1.1E+02 0.0025 27.1 3.6 50 45-97 99-148 (423)
359 TIGR03821 AblA_like_1 lysine-2 22.4 5.1E+02 0.011 22.4 10.0 90 128-217 143-245 (321)
360 TIGR00228 ruvC crossover junct 22.4 1.4E+02 0.003 23.0 3.8 19 196-214 83-102 (156)
361 cd00739 DHPS DHPS subgroup of 22.2 4.6E+02 0.01 21.8 10.0 24 144-167 186-209 (257)
362 COG0274 DeoC Deoxyribose-phosp 22.2 4.5E+02 0.0098 21.7 7.9 75 40-126 138-212 (228)
363 COG1908 FrhD Coenzyme F420-red 22.2 3.3E+02 0.0073 20.2 6.4 61 71-136 42-105 (132)
364 KOG2299 Ribonuclease HI [Repli 22.2 4.9E+02 0.011 22.0 7.0 51 39-95 120-174 (301)
365 COG1448 TyrB Aspartate/tyrosin 22.1 1.6E+02 0.0035 26.3 4.5 109 71-179 106-236 (396)
366 PRK07810 O-succinylhomoserine 22.1 5.3E+02 0.012 22.9 8.0 45 166-210 143-190 (403)
367 cd04438 DEP_dishevelled DEP (D 22.0 33 0.00071 23.5 0.2 37 124-161 32-68 (84)
368 PF10007 DUF2250: Uncharacteri 22.0 77 0.0017 22.1 2.1 51 112-165 8-58 (92)
369 KOG1892 Actin filament-binding 22.0 64 0.0014 32.4 2.1 57 109-165 6-63 (1629)
370 PRK10826 2-deoxyglucose-6-phos 21.9 2.8E+02 0.0061 22.0 5.7 36 141-177 93-128 (222)
371 PRK10997 yieM hypothetical pro 21.8 3E+02 0.0065 25.5 6.4 66 111-176 398-468 (487)
372 PRK07114 keto-hydroxyglutarate 21.8 4.5E+02 0.0097 21.5 8.3 36 40-78 25-60 (222)
373 PRK09776 putative diguanylate 21.7 2.4E+02 0.0052 28.4 6.3 100 109-212 939-1051(1092)
374 PRK09413 IS2 repressor TnpA; R 21.7 88 0.0019 22.7 2.5 41 39-82 13-53 (121)
375 COG1456 CdhE CO dehydrogenase/ 21.7 5.9E+02 0.013 22.8 7.7 98 107-213 107-213 (467)
376 COG0135 TrpF Phosphoribosylant 21.5 4.4E+02 0.0096 21.3 7.3 100 40-167 11-111 (208)
377 PRK11893 methionyl-tRNA synthe 21.5 1.5E+02 0.0032 27.2 4.5 48 109-159 69-116 (511)
378 PRK14463 ribosomal RNA large s 21.5 5.6E+02 0.012 22.5 8.8 74 141-214 232-323 (349)
379 PF04481 DUF561: Protein of un 21.5 4.2E+02 0.0091 21.9 6.4 105 40-156 25-145 (242)
380 TIGR01325 O_suc_HS_sulf O-succ 21.4 4.3E+02 0.0094 23.2 7.3 47 167-213 128-177 (380)
381 PRK05939 hypothetical protein; 21.4 5.3E+02 0.011 22.9 7.8 61 152-214 106-170 (397)
382 cd00614 CGS_like CGS_like: Cys 21.4 5.1E+02 0.011 22.5 7.7 51 167-217 114-167 (369)
383 cd06543 GH18_PF-ChiA-like PF-C 21.3 5.2E+02 0.011 22.1 13.3 179 24-215 72-263 (294)
384 PRK14463 ribosomal RNA large s 21.3 4.6E+02 0.01 23.0 7.3 84 105-191 129-217 (349)
385 PLN02231 alanine transaminase 21.3 3.2E+02 0.0069 25.5 6.6 15 196-210 294-309 (534)
386 PRK10508 hypothetical protein; 21.2 2.8E+02 0.0062 24.1 5.9 42 107-153 286-327 (333)
387 PF00825 Ribonuclease_P: Ribon 21.2 2.5E+02 0.0053 19.9 4.7 47 108-154 58-108 (111)
388 PRK13238 tnaA tryptophanase/L- 21.1 1.4E+02 0.0031 27.2 4.2 46 166-211 161-217 (460)
389 PRK05718 keto-hydroxyglutarate 21.1 4.5E+02 0.0098 21.3 8.0 52 40-94 25-76 (212)
390 PRK08045 cystathionine gamma-s 21.1 5.7E+02 0.012 22.6 8.0 84 129-216 92-178 (386)
391 PLN02775 Probable dihydrodipic 21.0 5.3E+02 0.012 22.1 8.4 58 116-177 68-125 (286)
392 COG1104 NifS Cysteine sulfinat 21.0 2.2E+02 0.0048 25.5 5.2 75 144-218 103-184 (386)
393 COG2352 Ppc Phosphoenolpyruvat 21.0 6.2E+02 0.013 25.3 8.4 97 112-211 470-602 (910)
394 PRK00039 ruvC Holliday junctio 20.9 1.7E+02 0.0036 22.7 4.0 45 170-214 52-106 (164)
395 PRK15424 propionate catabolism 20.9 6.1E+02 0.013 23.8 8.3 68 142-214 93-164 (538)
396 PF00465 Fe-ADH: Iron-containi 20.7 3.2E+02 0.0069 23.9 6.2 93 65-176 6-98 (366)
397 TIGR01182 eda Entner-Doudoroff 20.7 4.6E+02 0.0099 21.1 8.2 46 40-90 18-63 (204)
398 PRK11815 tRNA-dihydrouridine s 20.7 5.6E+02 0.012 22.2 12.6 134 40-185 75-232 (333)
399 cd03174 DRE_TIM_metallolyase D 20.7 4.7E+02 0.01 21.3 13.4 23 40-62 17-39 (265)
400 TIGR02080 O_succ_thio_ly O-suc 20.7 5.9E+02 0.013 22.4 10.9 83 129-215 91-176 (382)
401 cd02931 ER_like_FMN Enoate red 20.7 6E+02 0.013 22.5 13.4 143 39-185 140-334 (382)
402 TIGR02666 moaA molybdenum cofa 20.5 5.5E+02 0.012 22.0 15.1 131 39-190 43-193 (334)
403 cd08561 GDPD_cytoplasmic_ScUgp 20.5 4.2E+02 0.009 21.6 6.6 22 40-61 11-32 (249)
404 PF01890 CbiG_C: Cobalamin syn 20.4 3.2E+02 0.0068 19.9 5.2 62 107-175 12-73 (121)
405 KOG4175 Tryptophan synthase al 20.3 4.8E+02 0.01 21.3 8.0 70 39-124 132-202 (268)
406 COG4573 GatZ Predicted tagatos 20.3 1.3E+02 0.0028 26.5 3.4 51 16-67 77-134 (426)
407 PF13653 GDPD_2: Glycerophosph 20.2 1.1E+02 0.0024 16.5 2.0 17 45-61 10-26 (30)
408 COG3033 TnaA Tryptophanase [Am 20.1 2.5E+02 0.0054 25.2 5.2 45 165-209 168-223 (471)
409 COG4900 Predicted metallopepti 20.1 88 0.0019 22.7 2.1 30 109-138 6-38 (133)
410 cd00671 ArgRS_core catalytic c 20.1 2.2E+02 0.0049 22.7 4.8 46 109-159 67-112 (212)
411 PRK14462 ribosomal RNA large s 20.1 6.1E+02 0.013 22.4 10.4 82 133-214 226-336 (356)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9.5e-53 Score=360.76 Aligned_cols=207 Identities=43% Similarity=0.623 Sum_probs=186.9
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCC-CCce
Q 026727 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKI 87 (234)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~-R~~~ 87 (234)
|++++||++|++||+||||||.+|+.+. ..+.+++.++|++|+++||||||||+.||. |.||+++|+||++.. |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~-g~sE~ilG~~l~~~~~Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGD-GRSEEILGEALKERGRRDKV 78 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCC-CchHHHHHHHHhccCCCCeE
Confidence 7899999999999999999999987422 225567888999999999999999999998 899999999999744 8999
Q ss_pred EEEeeeccccCCCCCc-CCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC
Q 026727 88 QLATKFGCFMLDGVSI-GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (234)
Q Consensus 88 ~i~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~ 166 (234)
+|+||++....++... ..+.+++.|+++++.||+||||||||+|++|||+...+.++++++|.+|+++|+||+||+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999998766421112 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhc-CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCC
Q 026727 167 SADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G 217 (234)
+++++.++++. .+++++|.+||+++++.+.+++++|+++|| +++||||+.|
T Consensus 159 ~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G 211 (316)
T COG0667 159 SAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASG 211 (316)
T ss_pred CHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCcccc
Confidence 99999999998 599999999999998777779999999999 9999999555
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.8e-50 Score=341.86 Aligned_cols=209 Identities=44% Similarity=0.664 Sum_probs=190.3
Q ss_pred CCCCCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--C
Q 026727 5 PQVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--L 82 (234)
Q Consensus 5 ~~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~ 82 (234)
....|+|+++|++|++||++|||||.+. +|+...+++++++++++|+++|+|+||||++||+ +.||..+|++|++ .
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~-~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~-~~~E~llg~~i~~~~~ 85 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWT-TFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGN-GQSEELLGEFIKSRGW 85 (336)
T ss_pred chhcceeeeccCCCceecceeecceeee-ccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCC-cccHHHHHHHHHhcCC
Confidence 3456899999999999999999998543 3555578999999999999999999999999998 9999999999998 7
Q ss_pred CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEe
Q 026727 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIG 162 (234)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG 162 (234)
+|++++|+||++.... +......+...+.+.++.|+++||++|||+|++||+|+..++++++++|.+++++|+|++||
T Consensus 86 ~R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiG 163 (336)
T KOG1575|consen 86 RRDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWG 163 (336)
T ss_pred cCCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEE
Confidence 7999999999987652 23356678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhcCC--eeEEeecCCCCCCCch-hcHHHHHHHCCe-EEEeecccCC
Q 026727 163 LSEASADTIRRAHAVHP--ITAVQMEYSLWTREIE-DDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 163 vsn~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~gi-v~a~spl~~G 217 (234)
+|++++++++++++..+ |+++|++||++.++.+ .++++.|++.|| +++||||+.|
T Consensus 164 lSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G 222 (336)
T KOG1575|consen 164 LSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRG 222 (336)
T ss_pred eccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccc
Confidence 99999999999999876 9999999999999855 669999999999 9999999655
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.3e-50 Score=335.30 Aligned_cols=187 Identities=32% Similarity=0.507 Sum_probs=168.8
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCc
Q 026727 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK 86 (234)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~ 86 (234)
+++.+| ++|.+||.+|||||+++. .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ ++|++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg----nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG----NEEEVGEAIKESGVPREE 70 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc----CHHHHHHHHHhcCCCHHH
Confidence 456788 578899999999999854 23388999999999999999999999 69999999998 78999
Q ss_pred eEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC--CCHHHHHHHHHHHHHcCcccEEecC
Q 026727 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLS 164 (234)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs 164 (234)
+||+||++... .+.+.+.+++++||++||+||+|+|++|||.+. ..+.++|++|++++++|+||+||||
T Consensus 71 lFittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 99999999876 568999999999999999999999999999763 3378999999999999999999999
Q ss_pred CCcHHHHHHHhhc--CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCc
Q 026727 165 EASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 165 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
||+.++++++++. ..|.++|++||++.++ .+++++|+++|| ++|||||+.|+
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~ 196 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGG 196 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCccccc
Confidence 9999999999876 4589999999999997 459999999999 99999998654
No 4
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.2e-48 Score=322.70 Aligned_cols=185 Identities=29% Similarity=0.435 Sum_probs=170.1
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc------CCC
Q 026727 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ------LPR 84 (234)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~------~~R 84 (234)
+.+| ++|.+||.||||||+. +..++.+.++.|+++|+||||||..|+ +|+.+|++|++ .+|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~----NE~evG~aik~~i~~~~v~R 72 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG----NEKEVGEAIKELLAEGGVKR 72 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC----ChHHHHHHHHHHhhhCCcch
Confidence 7889 8999999999999873 568899999999999999999999999 69999999986 689
Q ss_pred CceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC----------------CCHHHHHHH
Q 026727 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----------------VSIEDTMGE 148 (234)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----------------~~~~~~~~~ 148 (234)
+++||+||++... ..++.++.++++||++||+||+|+|++|||-.. .+..++|++
T Consensus 73 ediFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 73 EDIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred hhheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 9999999999765 469999999999999999999999999999543 346789999
Q ss_pred HHHHHHcCcccEEecCCCcHHHHHHHhhc--CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCcc
Q 026727 149 LKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQE 219 (234)
Q Consensus 149 l~~l~~~G~ir~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~~ 219 (234)
||+++++|++|+||||||+..+|++++.. .+|.++|+++|++.++ .+++++|+++|| +.|||||+++..
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC
Confidence 99999999999999999999999999887 6799999999999986 679999999999 999999987765
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.7e-47 Score=328.41 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=174.9
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCceE
Q 026727 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (234)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~~~ 88 (234)
||+||++|++||+||||||++ ++...+.+++.+++++|+++|||+||||+.||. |.||+.+|++|+. ..|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAA-GKAEVVLGNILKKKGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCC-CccHHHHHHHHHhcCCCcccEE
Confidence 578999999999999999974 222347788999999999999999999999997 8899999999985 3699999
Q ss_pred EEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcH
Q 026727 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
|+||++..... ......+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++|+||+||||||++
T Consensus 77 iaTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~ 154 (317)
T TIGR01293 77 ITTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSS 154 (317)
T ss_pred EEeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCH
Confidence 99998642110 0113467999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHhhc------CCeeEEeecCCCCCCCc-hhcHHHHHHHCCe-EEEeecccCC
Q 026727 169 DTIRRAHAV------HPITAVQMEYSLWTREI-EDDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 169 ~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi-v~a~spl~~G 217 (234)
++++++... .+++++|.+||++++.. +.+++++|+++|| +++|+||++|
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G 211 (317)
T TIGR01293 155 MEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACG 211 (317)
T ss_pred HHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEecccccc
Confidence 998776432 46889999999999863 5689999999999 9999999666
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.7e-47 Score=331.02 Aligned_cols=210 Identities=26% Similarity=0.430 Sum_probs=179.1
Q ss_pred CCCCCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCC-CChhHHHHHHHHhc--
Q 026727 5 PQVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV-DHDNEIMVGKALKQ-- 81 (234)
Q Consensus 5 ~~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-~g~sE~~lg~al~~-- 81 (234)
+...|+|++||++|++||+||||||+. |+...+.+++.++|++|+++|||+||||+.||+ +|.||+.+|++|++
T Consensus 9 ~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~ 85 (346)
T PRK09912 9 RYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF 85 (346)
T ss_pred CCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc
Confidence 345699999999999999999999972 332235678899999999999999999999994 37899999999985
Q ss_pred -CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccE
Q 026727 82 -LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY 160 (234)
Q Consensus 82 -~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 160 (234)
..|++++|+||++..... +......+++.+++++++||++||+||||+|++|+|+...+++++|++|++|+++|+|++
T Consensus 86 ~~~Rd~~~I~TK~g~~~~~-~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~ 164 (346)
T PRK09912 86 AAYRDELIISTKAGYDMWP-GPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALY 164 (346)
T ss_pred cCCCCeEEEEEEecccCCC-CcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 269999999999753111 011123679999999999999999999999999999888889999999999999999999
Q ss_pred EecCCCcHHHHHHHhhc-----CCeeEEeecCCCCCCCch-hcHHHHHHHCCe-EEEeecccCCc
Q 026727 161 IGLSEASADTIRRAHAV-----HPITAVQMEYSLWTREIE-DDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 161 iGvsn~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
||||||++++++++.+. .++.++|++||++++..+ .+++++|+++|| +++|+||++|.
T Consensus 165 iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~ 229 (346)
T PRK09912 165 VGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGL 229 (346)
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcc
Confidence 99999999988766542 367899999999998644 579999999999 99999997764
No 7
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.4e-46 Score=317.68 Aligned_cols=200 Identities=41% Similarity=0.641 Sum_probs=182.0
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCC-CCceEE
Q 026727 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQL 89 (234)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~-R~~~~i 89 (234)
+++||++|++||+||||++.++..| .+.+++.+++.+|++.|||+||||+.||+ |.||+.+|++|++.+ |++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-g~sE~~lG~al~~~~~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGD-GESEELLGEALKERGPREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCC-CCCHHHHHHHHhccCCcCcEEE
Confidence 5789999999999999999987655 36789999999999999999999999998 899999999999754 999999
Q ss_pred EeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCC-HHHHHHHHHHHHHcCcccEEecCCCcH
Q 026727 90 ATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
+||++..... .+..+++.+++++++||++|++||||+|++|+|+.... ..++|++|++++++|+||+||||||++
T Consensus 77 ~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 77 ATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred EeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 9999865421 13468999999999999999999999999999987665 789999999999999999999999999
Q ss_pred HHHHHHhhc--CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCc
Q 026727 169 DTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 169 ~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
+.++++++. .+|+++|++||++++..+.+++++|+++|| +++|+||++|.
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~ 205 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGL 205 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCce
Confidence 999999887 799999999999999865579999999999 99999998885
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.3e-46 Score=326.25 Aligned_cols=205 Identities=27% Similarity=0.373 Sum_probs=174.2
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCC------CChhHHHHHHHHhc-
Q 026727 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV------DHDNEIMVGKALKQ- 81 (234)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~------~g~sE~~lg~al~~- 81 (234)
|+|++||++|++||+||||||++|. ..+++++.+++++|+++|||+||||+.||. .|.||+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999864 236789999999999999999999999972 27799999999985
Q ss_pred CCCCceEEEeeeccccC-CCC--CcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCC-----------------CCC
Q 026727 82 LPRDKIQLATKFGCFML-DGV--SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----------------SVS 141 (234)
Q Consensus 82 ~~R~~~~i~tK~~~~~~-~~~--~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----------------~~~ 141 (234)
..|++++|+||++.... ... ......+++.+++++++||++||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 46999999999853211 000 0012467999999999999999999999999999864 246
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc------CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV------HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 142 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
+.++|++|++|+++|+|++||+|||+.+++++++.. ..+.++|.+||++++..+.+++++|+++|| +++||||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776431 357889999999998766789999999999 9999999
Q ss_pred cCC
Q 026727 215 FCL 217 (234)
Q Consensus 215 ~~G 217 (234)
+.|
T Consensus 237 ~~G 239 (346)
T PRK10625 237 AFG 239 (346)
T ss_pred cCe
Confidence 665
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5.8e-46 Score=319.76 Aligned_cols=200 Identities=32% Similarity=0.509 Sum_probs=172.0
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCceE
Q 026727 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (234)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~~~ 88 (234)
||+||+||++||.||||||++|..|+. .+.+++.+++++|+++|||+||||+.||. |.+|+.+|++|++ ..|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~~~R~~v~ 78 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGG-TLSEKVLGKALKALGIPREKYV 78 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCC-CchHHHHHHHHHhCCCCcceEE
Confidence 689999999999999999999866654 37889999999999999999999999998 8999999999986 4699999
Q ss_pred EEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC---CCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
|+||++.... ....+++.+++++++||++||+||||+|++|+|+.. .++.++|++|++|+++|+||+||+||
T Consensus 79 I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn 153 (314)
T PLN02587 79 VSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITG 153 (314)
T ss_pred EEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999974321 123679999999999999999999999999999642 34678999999999999999999999
Q ss_pred CcHHHHHHHhhc---C--CeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCc
Q 026727 166 ASADTIRRAHAV---H--PITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 166 ~~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
|++++++.+.+. . .+..+|..||+.++.. .+++++|+++|| +++|+||++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~ 211 (314)
T PLN02587 154 LPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGL 211 (314)
T ss_pred CCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccc
Confidence 999888776543 2 3444678888877643 589999999999 99999997774
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-44 Score=307.92 Aligned_cols=202 Identities=28% Similarity=0.445 Sum_probs=174.2
Q ss_pred ceecCCCCcccCcceecccccCC--CCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceE
Q 026727 11 RVKLGSQGLEVSRLGFGCGGLSG--IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQ 88 (234)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~ 88 (234)
+++|+ |++||+||||||++|+ .|+...+++++.+++++|+++|||+||||+.||+ +.+|+.+|++++ ..|++++
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-~~sE~~lg~~l~-~~R~~~~ 84 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGP-HVTNQLIREALH-PYPDDLT 84 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCC-CcHHHHHHHHHh-cCCCeEE
Confidence 45674 8999999999999975 3665557888999999999999999999999998 889999999997 4699999
Q ss_pred EEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCC-----CCCCHHHHHHHHHHHHHcCcccEEec
Q 026727 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD-----TSVSIEDTMGELKKLVEEGKIKYIGL 163 (234)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~-----~~~~~~~~~~~l~~l~~~G~ir~iGv 163 (234)
|+||++......+......+++.+++++++||++||+||||+|++|+++ ...++.++|++|++|+++|+||+|||
T Consensus 85 i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGv 164 (290)
T PRK10376 85 IVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGL 164 (290)
T ss_pred EEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEe
Confidence 9999875432111122356899999999999999999999999998842 12357899999999999999999999
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCC
Q 026727 164 SEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 164 sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G 217 (234)
|||++++++++.+..+++++|++||++++. ..+++++|+++|| +++|+||+++
T Consensus 165 Sn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 165 SNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred cCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCC
Confidence 999999999998888899999999999976 3679999999999 9999999744
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.6e-44 Score=300.04 Aligned_cols=177 Identities=25% Similarity=0.374 Sum_probs=159.0
Q ss_pred cccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCceEEEeeeccc
Q 026727 19 LEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCF 96 (234)
Q Consensus 19 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~~~i~tK~~~~ 96 (234)
.+||.||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~v~i~TK~~~~ 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD----NEAAVGQAIAESGVPRDELFITTKIWID 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC----CHHHHHHHHHHcCCChhHeEEEEEeCCC
Confidence 36999999999763 46789999999999999999999999 69999999985 479999999998532
Q ss_pred cCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC--CCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHH
Q 026727 97 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (234)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~ 174 (234)
. .+++.+++++++||+|||+||||+|++|+|++. .+..++|++|++++++|+||+||||||+.++++++
T Consensus 69 ~---------~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 69 N---------LAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred C---------CCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 2 568999999999999999999999999999763 56789999999999999999999999999999988
Q ss_pred hhc---CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCc
Q 026727 175 HAV---HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 175 ~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
++. .+++++|++||++++. .+++++|+++|| +++|+||++|.
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~ 185 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGK 185 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCc
Confidence 764 3689999999999975 689999999999 99999998885
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.9e-43 Score=300.84 Aligned_cols=186 Identities=18% Similarity=0.206 Sum_probs=163.2
Q ss_pred CcccCcceecccccCCC-------CCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEE
Q 026727 18 GLEVSRLGFGCGGLSGI-------YNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLA 90 (234)
Q Consensus 18 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~ 90 (234)
+++||+||||||++|+. |+. .+++++.+++++|+++|||+||||+.||. ||+.+|++|+...+++++|+
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~---SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR---AETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh---HHHHHhhhhccCCceEeecc
Confidence 57899999999999853 343 48899999999999999999999999986 99999999984334678899
Q ss_pred eeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCH-HHHHHHHHHHHHcCcccEEecCCCcH
Q 026727 91 TKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSI-EDTMGELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 91 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
||.. ..+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++|+||+||||||++
T Consensus 78 tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 146 (292)
T PRK14863 78 TVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHAS 146 (292)
T ss_pred cccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCH
Confidence 9842 1358999999999999999999999999999753 233 57899999999999999999999999
Q ss_pred HHHHHHhhcCCeeEEeecCCCCCCCch-hcHHHHHHHCCe-EEEeecccCCc
Q 026727 169 DTIRRAHAVHPITAVQMEYSLWTREIE-DDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
+++.++....+|+++|++||+++++.+ .+++++|+++|| +++|+||++|.
T Consensus 147 ~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~ 198 (292)
T PRK14863 147 DDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGL 198 (292)
T ss_pred HHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcc
Confidence 999888777889999999999998654 479999999999 99999998885
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.1e-43 Score=297.63 Aligned_cols=188 Identities=35% Similarity=0.534 Sum_probs=162.7
Q ss_pred cceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCceEEEeeeccccCCC
Q 026727 23 RLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCFMLDG 100 (234)
Q Consensus 23 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~~~i~tK~~~~~~~~ 100 (234)
+||||||++++. ..+.+++.++++.|++.|||+||||+.|++ |.||+.+|++|++ .+|++++|+||+...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~---- 72 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGN-GRSERILGRALRKSRVPRDDIFISTKVYGD---- 72 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGG-GTHHHHHHHHHHHTSSTGGGSEEEEEEESS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccc-cccccccccccccccccccccccccccccc----
Confidence 589999998752 458999999999999999999999999977 7899999999997 789999999999211
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCC-HHHHHHHHHHHHHcCcccEEecCCCcHHHHHHH--hhc
Q 026727 101 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRA--HAV 177 (234)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~--~~~ 177 (234)
.......+++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+||||||+++.++++ ...
T Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 152 (283)
T PF00248_consen 73 GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGS 152 (283)
T ss_dssp SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTS
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 12344578999999999999999999999999999999888 899999999999999999999999999999999 455
Q ss_pred CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCc
Q 026727 178 HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
.+|+++|++||++++....+++++|+++|| +++|+||++|.
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~ 194 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGL 194 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGC
T ss_pred ccccccccccccccccccccccccccccccccccccccccCc
Confidence 789999999999966666899999999999 99999998775
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.3e-43 Score=281.51 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=185.2
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCc
Q 026727 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK 86 (234)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~ 86 (234)
|++++|++.|+++|++.+|+|++.. |+. +..+....+..|++.|||+||-|+.||. ++.|+.+|.+|+. ..|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGg-y~cE~~fg~aL~l~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGG-YQCEALFGEALKLAPGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCC-ccHHHHHHHHHhcChhhhhh
Confidence 7889999999999999999999975 653 5688999999999999999999999998 9999999999987 56999
Q ss_pred eEEEeeeccccCCC---CCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEec
Q 026727 87 IQLATKFGCFMLDG---VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (234)
Q Consensus 87 ~~i~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 163 (234)
+.|.||++...+.. .-...+.|.++|..++++||.+|+|||+|++++|+||+..+.+|+.+|+..|.++||||++||
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeec
Confidence 99999999765421 112457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhc--CCeeEEeecCCCCCCCch-hcHHHHHHHCCe-EEEeecccCCc
Q 026727 164 SEASADTIRRAHAV--HPITAVQMEYSLWTREIE-DDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 164 sn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
|||++.+++-+-+. .++.+||+++|+++++.. ++.+++|+++.| ++|||||++|+
T Consensus 157 SNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~ 215 (298)
T COG4989 157 SNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGG 215 (298)
T ss_pred CCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCc
Confidence 99999998876655 457899999999997643 789999999999 99999999885
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=4.5e-42 Score=290.29 Aligned_cols=182 Identities=26% Similarity=0.342 Sum_probs=162.6
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCceE
Q 026727 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (234)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~~~ 88 (234)
+.+| ++|+.||.||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|++ .+|++++
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~~~ 72 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK----NEEGVGKALKEASVAREELF 72 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC----CHHHHHHHHHHcCCCHHHEE
Confidence 4667 7899999999999875 457899999999999999999999999 69999999986 4689999
Q ss_pred EEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCC-CHHHHHHHHHHHHHcCcccEEecCCCc
Q 026727 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEAS 167 (234)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvsn~~ 167 (234)
|+||++. .+++.+++++++||++||+||||+|++|+|++.. +..++|++|++|+++|+||+||||||+
T Consensus 73 i~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 141 (275)
T PRK11565 73 ITTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ 141 (275)
T ss_pred EEEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 9999853 2478999999999999999999999999997653 467999999999999999999999999
Q ss_pred HHHHHHHhhc--CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccCCc
Q 026727 168 ADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 168 ~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
++++++++.. .++.++|++||++.++ .+++++|+++|| +++|+||++|.
T Consensus 142 ~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 142 IHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC
Confidence 9999988754 3578999999999975 679999999999 99999998663
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=5.9e-42 Score=288.65 Aligned_cols=200 Identities=27% Similarity=0.347 Sum_probs=181.4
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceE
Q 026727 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQ 88 (234)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~ 88 (234)
|.||++|+||.++|.||||||++...|...++++.+.+++++|+++|||+||||..|.. |.||..+|+||++..|++|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~-g~sE~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHG-GESEEFLGKALKDGYREKVK 79 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccC-CCchHHHHHHhhhcccceEE
Confidence 78999999999999999999999887776679999999999999999999999999976 77999999999998899999
Q ss_pred EEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHH-----HHHHHHHHHHHcCcccEEec
Q 026727 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-----DTMGELKKLVEEGKIKYIGL 163 (234)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGv 163 (234)
++||++.+.. -+++.+++-++++|++|++||+|+|+||.... ..++ +.++.+++++++|+||++|+
T Consensus 80 LaTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 80 LATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred EEeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 9999985442 46999999999999999999999999999876 3332 36999999999999999999
Q ss_pred CCCc-HHHHHHHhhcCCeeEEeecCCCCCCCch--hcHHHHHHHCCe-EEEeecccCCc
Q 026727 164 SEAS-ADTIRRAHAVHPITAVQMEYSLWTREIE--DDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 164 sn~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
|.|+ .+.+.+++...+++++|++||.++.... .+.+++|.++|+ |+.++|+.+|+
T Consensus 151 SfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~ 209 (391)
T COG1453 151 SFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGG 209 (391)
T ss_pred cCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCC
Confidence 9996 4678889999999999999999998754 489999999999 99999997776
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6e-39 Score=259.59 Aligned_cols=206 Identities=30% Similarity=0.452 Sum_probs=177.3
Q ss_pred CCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCce
Q 026727 8 HVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKI 87 (234)
Q Consensus 8 ~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~ 87 (234)
.|+||.+|+||+.||++|||+..++..|+. .++++....+..|+++|||+||||+.||+ +++|+.+|.++++.||+..
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygq-s~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQ-SRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCc-chhHHHHHHHHhhCChhhe
Confidence 378999999999999999999999988886 36777777667799999999999999998 9999999999999999999
Q ss_pred EEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC----CCHHHHHHHHHHHHHcCcccEEec
Q 026727 88 QLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGL 163 (234)
Q Consensus 88 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGv 163 (234)
||+||++..... .....+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++|++|+||+
T Consensus 99 yIaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 99 YIATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 999999864422 234578999999999999999999999999999987543 345799999999999999999999
Q ss_pred CCCcHHHHHHHhhc--CCeeEEe--ecCCCCCCCchhcHHHHHHHCCe-EEEeecccCC
Q 026727 164 SEASADTIRRAHAV--HPITAVQ--MEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 164 sn~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~G 217 (234)
+.++.+.+...++. +.++++- .+|++.+.. .-..+++.+++|+ |+.-+++.-|
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~Asalsmg 235 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMG 235 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHH
Confidence 99999999998876 3466666 466666543 2678888999999 9999999555
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.44 E-value=5.1e-07 Score=73.10 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc--CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 142 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
+.+.|+.||+++.+|+|..||||.|++.++++++.. ..|..+|+++.-.+.-+ ++|.++|..++| +...|
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 456899999999999999999999999999999887 57899999888888654 899999999999 88765
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.95 E-value=2.9 Score=35.93 Aligned_cols=152 Identities=15% Similarity=0.063 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+.++..+.+..+.+.|++.|+.-- |.+...+...=+++++... ++-|.-+.... ++.+.. ..+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~----------~~~~~A-~~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQG----------WTPEEA-VELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCCC----------cCHHHH-HHHHHH
Confidence 556777888888999999998742 3101122222234444222 56666665422 334332 223344
Q ss_pred HHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-Cchhc
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDD 197 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 197 (234)
|+.+ ++.++..|-+. +-++.+.+|.+...|. ..|=+-++.+.+.++++....+++|+.....-. ....+
T Consensus 200 l~~~-----~l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAEL-----GVELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhc-----CCCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 4444 44555655332 2366677788776666 334445788999999988889999987555432 11278
Q ss_pred HHHHHHHCCe-EEEeecc
Q 026727 198 IIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 198 l~~~~~~~gi-v~a~spl 214 (234)
+..+|+++|+ ++..+-+
T Consensus 271 ~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 271 IADLARAAGLKVMVGCMV 288 (316)
T ss_pred HHHHHHHcCCCEEEECch
Confidence 9999999999 8775443
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=92.78 E-value=0.69 Score=36.97 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHH-------
Q 026727 46 SIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA------- 118 (234)
Q Consensus 46 ~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~------- 118 (234)
+++...++.|-+.+|-.-..| + +-+.|++. + ++.. . ....+++.+.+++++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~-LL~~L~~~-k-~v~g----~---------GvEid~~~v~~cv~rGv~Viq~ 62 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------E-LLAYLKDE-K-QVDG----Y---------GVEIDPDNVAACVARGVSVIQG 62 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------H-HHHHHHHh-c-CCeE----E---------EEecCHHHHHHHHHcCCCEEEC
Confidence 566778888999999754333 2 33455421 1 1110 0 112456666665544
Q ss_pred ----HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhh-c-CCeeEEeecCCCCCC
Q 026727 119 ----SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA-V-HPITAVQMEYSLWTR 192 (234)
Q Consensus 119 ----sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~-~-~~~~~~q~~~n~~~~ 192 (234)
.|....-+..|.+.+..- -+.+......|+++.+-|+-.-|++.||.-+..+--+- . .-|..-.++|+-+++
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC
Confidence 444444445555554421 12233456667788888988889999998877654433 2 346677888888887
Q ss_pred Cch-----hcHHHHHHHCCe-EEEeecccCCc
Q 026727 193 EIE-----DDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 193 ~~~-----~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
+.- .++-++|++.|+ +.-..++.++.
T Consensus 141 PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 141 PNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 532 789999999999 99998886655
No 21
>PRK08392 hypothetical protein; Provisional
Probab=92.61 E-value=3.7 Score=33.26 Aligned_cols=146 Identities=13% Similarity=0.072 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCCEEeCCcCcCCC--ChhHHHHHHHHhcCCCCceEE--EeeeccccCCCCCcCCCCCHHHHHHHHHH
Q 026727 43 VGCSIIKETFNRGITLFDTSDVYGVD--HDNEIMVGKALKQLPRDKIQL--ATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (234)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~~--g~sE~~lg~al~~~~R~~~~i--~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (234)
...+.+..|.+.|++.+=.+++.... ..-+..+.+.-+-..+.++.| ..-+.... +. .+..++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~------------~~-~~~~~~ 81 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP------------NG-VDITDD 81 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC------------Cc-chhHHH
Confidence 46789999999999998777665310 011122221111011223333 22222111 11 122333
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC--------cHHHHHHHhh----cC-CeeEEee
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA--------SADTIRRAHA----VH-PITAVQM 185 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~--------~~~~l~~~~~----~~-~~~~~q~ 185 (234)
.++. .||+ +.-+|........++..+.+.++.+.+.+.-+|=-+. ..+.++++++ .. .+.+|-
T Consensus 82 ~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt- 157 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS- 157 (215)
T ss_pred HHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-
Confidence 4443 3555 5667843332334567888888888887776654221 1123333322 22 233332
Q ss_pred cCCCCCCCchhcHHHHHHHCCe-EE
Q 026727 186 EYSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 186 ~~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
..+.+..++++.|++.|+ ++
T Consensus 158 ----~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 ----RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred ----CCCCCCHHHHHHHHHcCCEEE
Confidence 122234689999999999 65
No 22
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=91.58 E-value=2.4 Score=33.97 Aligned_cols=144 Identities=10% Similarity=-0.005 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc----CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
+.+++.+++..|++.|++..|.- +..+..+++. +.++++++.-=. ...+.+++.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~---------~~~l~p~m~~iG~~w~~gei~va~~~-------------~a~~~~~~~ 67 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI---------EKGLMAGMGVVGKLFEDGELFLPHVM-------------MSADAMLAG 67 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH---------HHHHHHHHHHHHHHHcCCCccHHHHH-------------HHHHHHHHH
Confidence 78899999999999998876642 3334444433 344555442111 224455555
Q ss_pred HHHHHHHcCCC----ccCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCcHHHHHHHhhcCCeeEEeecCCCC
Q 026727 116 CEASLKRLDVD----YIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQMEYSLW 190 (234)
Q Consensus 116 ~~~sL~~Lg~d----~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~ 190 (234)
+......+..+ .---+++-.+..+..--...-.-.-+...| .|.++|. +-+++.+.+.+...+|+++.+.+...
T Consensus 68 l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~ 146 (197)
T TIGR02370 68 IKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMT 146 (197)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccc
Confidence 55554544321 112234444433322223333333455667 6777885 44567777777778888888877655
Q ss_pred CCCch-hcHHHHHHHCC
Q 026727 191 TREIE-DDIIPLCRFLH 206 (234)
Q Consensus 191 ~~~~~-~~l~~~~~~~g 206 (234)
..-.. .++++.+++.|
T Consensus 147 ~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 147 TTMYGQKDINDKLKEEG 163 (197)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 54322 78888888884
No 23
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=90.85 E-value=5.6 Score=31.87 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc----CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
+++++.+++..+++.|+...|. | +..+..+++. +.++++++.-=. +..+.++..
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~ 66 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAG 66 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHH
Confidence 7889999999999999875553 1 2333333332 344454443221 223444444
Q ss_pred HHHHHHHcCCCc---cCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCC
Q 026727 116 CEASLKRLDVDY---IDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (234)
Q Consensus 116 ~~~sL~~Lg~d~---iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~ 191 (234)
+......+.... ---+++-.+..+...-...-.-.-++..| .|.++| .+.+++.+.+++....|+++-+......
T Consensus 67 l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~ 145 (201)
T cd02070 67 LDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTT 145 (201)
T ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 444444443221 11344444433332222222333455677 456778 5556777777777677888777665544
Q ss_pred CCch-hcHHHHHHHC----Ce-EEEeecc
Q 026727 192 REIE-DDIIPLCRFL----HI-FLPYNPS 214 (234)
Q Consensus 192 ~~~~-~~l~~~~~~~----gi-v~a~spl 214 (234)
.-.. .++++.+++. ++ ++.-++.
T Consensus 146 ~~~~~~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 146 TMGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred cHHHHHHHHHHHHHCCCCcCCeEEEECCc
Confidence 3222 6777777777 46 5554443
No 24
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.68 E-value=10 Score=32.73 Aligned_cols=132 Identities=11% Similarity=-0.016 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC---Cc-----CcCCCC----hhHHHHHHHHhc---CCCCceEEEeeeccccCCCCCcC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT---SD-----VYGVDH----DNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVSIG 104 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt---A~-----~Yg~~g----~sE~~lg~al~~---~~R~~~~i~tK~~~~~~~~~~~~ 104 (234)
+.++..+....+.+.|+..||- .+ .||. | ..-+.+.+.++. ...+++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------ 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------
Confidence 5677777777888999999993 12 2443 2 233444444443 22235789999764321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHH---HHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCe
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIED---TMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPI 180 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~---~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~ 180 (234)
+.+. ...+-+.++..| +|.+.+|.-........ -|+...++++.-.|.-||..+ .++++.+++++....
T Consensus 146 ---~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 146 ---SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred ---CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 1122 235666677777 57778886533221111 377888888877788899888 578888888876666
Q ss_pred eEEee
Q 026727 181 TAVQM 185 (234)
Q Consensus 181 ~~~q~ 185 (234)
+.+++
T Consensus 219 DgVmi 223 (312)
T PRK10550 219 DAVMI 223 (312)
T ss_pred CEEEE
Confidence 66665
No 25
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=89.64 E-value=12 Score=33.24 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCC---ChhHHHHHHHHhc-----CCCCceEEEeee
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQ-----LPRDKIQLATKF 93 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~---g~sE~~lg~al~~-----~~R~~~~i~tK~ 93 (234)
+..++.+++..|++.|- .+.|++. -.+-+.+.+.+.+ ...++||+++-.
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 55778888888888874 3566651 1367777777654 567889998765
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.67 E-value=3.2 Score=34.44 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCcHHHHHHHhhcCCeeEEee
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (234)
++.+...+-+ +.|..+|+++|++-..-.+......++.++.++.+.+.+ .++...++....+.++.+.+. .++.+++
T Consensus 16 ~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVRI 93 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEEE
Confidence 4555555544 447788998888866554322212245688888888888 567667776556777777664 3556666
Q ss_pred cCCCCC--------C------CchhcHHHHHHHCCe-EEEee
Q 026727 186 EYSLWT--------R------EIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 186 ~~n~~~--------~------~~~~~l~~~~~~~gi-v~a~s 212 (234)
.+..-+ + +.-.+.+++++++|+ +...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 554431 1 112678889999999 65443
No 27
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=88.42 E-value=3 Score=33.86 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=50.3
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHH
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYSLWTREIEDDII 199 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~ 199 (234)
..+|.||+=+.+.-......+.+++ +.+...... +..+||. |.+.+.+.++++..+++.+|+.-. ...+.+
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a-~~i~~~v~~--~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~~~ 90 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQA-REIASAVPK--VKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPEYI 90 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHH-HHHHHhCCC--CCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHHHH
Confidence 5688899887666532333444333 222222222 7899997 578889999999999999998332 235667
Q ss_pred HHHHHC
Q 026727 200 PLCRFL 205 (234)
Q Consensus 200 ~~~~~~ 205 (234)
+..++.
T Consensus 91 ~~l~~~ 96 (208)
T COG0135 91 DQLKEE 96 (208)
T ss_pred HHHHhh
Confidence 777765
No 28
>PRK08609 hypothetical protein; Provisional
Probab=87.43 E-value=26 Score=33.01 Aligned_cols=150 Identities=12% Similarity=0.111 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCCEEeCCcCcCC----CChhHHHHHHHH------hc-CCCCceEEEeeeccccCCCCCcCCCCCHHH
Q 026727 43 VGCSIIKETFNRGITLFDTSDVYGV----DHDNEIMVGKAL------KQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (234)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~----~g~sE~~lg~al------~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~ 111 (234)
...+++..|.+.|+..|=.++++.. .+.+...+-..+ ++ ...=+|+...-+.... +.
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------------~g 417 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------------DG 417 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------------Cc
Confidence 3567999999999999988887621 022333333332 21 1111233333332211 11
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC---------Cc--HHHHHHHhhcCCe
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---------AS--ADTIRRAHAVHPI 180 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn---------~~--~~~l~~~~~~~~~ 180 (234)
...-.+..|+. .||+ +.-+|++- ..+.+++++.+.++.+.|.+.-||=-+ +. .+.+.+++....
T Consensus 418 ~~d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G- 492 (570)
T PRK08609 418 SLDYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN- 492 (570)
T ss_pred chhhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-
Confidence 11222234444 4665 66778753 345567888999999888888776544 11 122333322222
Q ss_pred eEEeecCCCCCCCchhcHHHHHHHCCe-EE
Q 026727 181 TAVQMEYSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
.++|++-+.+.......+++.|++.|+ ++
T Consensus 493 ~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 493 TALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred CEEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 245555554443334789999999999 54
No 29
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=87.21 E-value=19 Score=31.33 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc--CcCC---CChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD--VYGV---DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~--~Yg~---~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (234)
+.++..+....+.+.|++.|-.-- .|.. .....+.+ +++++.-.+++.|....... ++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~~----------~~~~~a~- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANGR----------WDLAEAI- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCCC----------CCHHHHH-
Confidence 356677778888899999887532 2210 00112222 34443223455555544211 3444333
Q ss_pred HHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-
Q 026727 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR- 192 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~- 192 (234)
+.+++|. ..++.+++.|-.. +.++.+.++++.-.+. ..|=|-++++.+.++++....+++|+...-.-.
T Consensus 207 ---~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 207 ---RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred ---HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 3333342 2355566666432 2456677777765555 333345788999999987778899887555432
Q ss_pred CchhcHHHHHHHCCe-EEEeec
Q 026727 193 EIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 193 ~~~~~l~~~~~~~gi-v~a~sp 213 (234)
....++...|+++|+ ++..+-
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 112789999999999 886653
No 30
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=86.39 E-value=2.7 Score=33.99 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecC
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~ 187 (234)
.+..+|.||+=+.+........+.+.+ ..+.+.. .+.++.+||. |-+++.+.++.+..+++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 345699999988754433333444433 3333333 3568889996 78899999999888999999843
No 31
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=84.71 E-value=22 Score=30.92 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCC---------C--------ChhHHHHHHHHhcCCCCceEEEeeeccccCCCC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV---------D--------HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~---------~--------g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~ 101 (234)
++.+...++.++|-+.|+-++-|--.+.. + -....++....+ .-+.++++|-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 46777889999999999999987544432 0 012222322222 233677777652
Q ss_pred CcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHH-HHHHHHHHHHcCcccEEecCCCcHHHHHHHh
Q 026727 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIED-TMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (234)
Q Consensus 102 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~ 175 (234)
+-+.+.++++...++=. .|+.++|+.... .++++ -+.+|..|.+.= ---||+|+|+...+..+.
T Consensus 158 ------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 158 ------TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred ------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 35677777766554433 399999997543 34554 256666666553 446999999977555443
No 32
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.31 E-value=16 Score=30.44 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=51.8
Q ss_pred HHHHHHHcCCCccCeEEEecCCCCCCHH-HHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeEEeecCCCCCCC
Q 026727 116 CEASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTRE 193 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (234)
+-+.+..+| +|.+.+|..+...... --++.+.++++.-.+.-|.... .+++.++++++....+.+.+---+....
T Consensus 160 ~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 334445666 5667777664432111 1245556666655566666654 4678888888766566555421122211
Q ss_pred -chhcHHHHHHHCCe
Q 026727 194 -IEDDIIPLCRFLHI 207 (234)
Q Consensus 194 -~~~~l~~~~~~~gi 207 (234)
...++.+.|+++|+
T Consensus 237 ~~~~~~~~~~~~~gi 251 (254)
T TIGR00735 237 ITIGEVKEYLAERGI 251 (254)
T ss_pred CCHHHHHHHHHHCCC
Confidence 12788999999998
No 33
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.72 E-value=6.9 Score=34.90 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+......++++|++.|++++|||.+... ...+... ..+..+.+..-+|..+ ..+--.....+++-
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~----~~~~~~~---a~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~ 141 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEP----PWKLDEE---AKKAGITAVLGCGFDP--------GITNVLAAYAAKEL 141 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCch----hhhhhHH---HHHcCeEEEcccCcCc--------chHHHHHHHHHHHh
Confidence 3445568999999999999999976662 2222222 2344566666665433 23333333334333
Q ss_pred HHHcCCCccCeEEEecCCCC
Q 026727 120 LKRLDVDYIDLYYQHRVDTS 139 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~ 139 (234)
.. .+++||+|..+.|+..
T Consensus 142 ~~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 142 FD--EIESIDIYVGGLGEHG 159 (389)
T ss_pred hc--cccEEEEEEecCCCCC
Confidence 33 5789999999988664
No 34
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=81.81 E-value=0.54 Score=41.21 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=38.9
Q ss_pred CcccEEecCCCcHHHHHHHhhcCC-eeEEeecCCCCCCCchhcHHHHHHHCCe
Q 026727 156 GKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTREIEDDIIPLCRFLHI 207 (234)
Q Consensus 156 G~ir~iGvsn~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi 207 (234)
|+||++||-=++++.+.++.+... -+..+.+..++.....+.+++.|++.||
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gi 316 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGI 316 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCC
Confidence 999999999999999998876522 2344444555554445789999999998
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=81.37 E-value=17 Score=29.58 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=58.6
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~ 205 (234)
.++.++..|-+.. -++.+.+|.+...+. ..+=|-++...+.++++...++++|+..+-.-.- ...++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5677777765433 256667777776665 3344446777787787777788999876665421 126889999999
Q ss_pred Ce-EEEeecccCC
Q 026727 206 HI-FLPYNPSFCL 217 (234)
Q Consensus 206 gi-v~a~spl~~G 217 (234)
|+ ++..+.+.++
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 99 8888765443
No 36
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.29 E-value=30 Score=28.77 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+.++..+.+..+++.|++.|-.--.-. ...+...=+++++.-.+++.|.-.... .++.+...+-+ +.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~--~~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD--PARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC--HHHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HH
Confidence 446667777888899999887532111 111122223444422334544433321 13444433332 33
Q ss_pred HHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-Cchhc
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDD 197 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 197 (234)
|+.+ ++.+++.|-+.. -++.+.++++.-.+. ..|=+-++...+.++++...++++|+..+..-. ....+
T Consensus 152 l~~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 152 LEDL-----GLDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred HHhc-----CCCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHH
Confidence 3444 445566664322 356667777765555 334345788889888888888999987666543 11278
Q ss_pred HHHHHHHCCe-EEEeecc
Q 026727 198 IIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 198 l~~~~~~~gi-v~a~spl 214 (234)
+...|+++|+ ++..+.+
T Consensus 223 ~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 223 VLAVAEALGLPVMVGSMI 240 (265)
T ss_pred HHHHHHHcCCcEEecCcc
Confidence 9999999999 8776554
No 37
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=81.12 E-value=33 Score=29.08 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC---Cc-------CcCCCChhHHHHHHHHhcCCCC-ceEEEeeeccccCCCCCcCCCCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT---SD-------VYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGS 108 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt---A~-------~Yg~~g~sE~~lg~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~ 108 (234)
+.++..+..+.+.++|+..||. ++ .|+ .+.+.+.+.++...+. ++-|..|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~---~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------- 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG---TDPEAVAEIVKAVKKATDVPVIVKLTPNV----------- 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc---CCHHHHHHHHHHHHhccCCCEEEEeCCCc-----------
Confidence 5677788888888999999985 22 233 2556666666543222 678889986432
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEE------EecCC--C---------C--CCHHHHHHHHHHHHHcCcccEEecCCC-cH
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYY------QHRVD--T---------S--VSIEDTMGELKKLVEEGKIKYIGLSEA-SA 168 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~------lh~~~--~---------~--~~~~~~~~~l~~l~~~G~ir~iGvsn~-~~ 168 (234)
+.+ ..+-+.+...|.|.|+++- +|... + . ....-.++.+.++++.=.+.-||+... ++
T Consensus 166 -~~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 166 -TDI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -hhH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 122 2334456778877665531 11100 0 0 001125677777777656888998884 78
Q ss_pred HHHHHHhhcCCeeEEeecCCCCC-CC----chhcHHHHHHHCCe
Q 026727 169 DTIRRAHAVHPITAVQMEYSLWT-RE----IEDDIIPLCRFLHI 207 (234)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 207 (234)
+.+.+++... .+.+|+-=.++. +. ...++.++.+++|.
T Consensus 244 ~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 244 EDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888888754 688887322222 11 12566667777764
No 38
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=80.95 E-value=28 Score=28.28 Aligned_cols=145 Identities=11% Similarity=-0.025 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc----CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
+++++.+++..|++.|+...|+- ++.+-.++.. +.++++++.-=. .+.+.++..
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii---------~~~l~p~m~~vG~~w~~gei~vaqe~-------------~as~~~~~~ 70 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII---------NGPLMDGMKVVGDLFGAGKMFLPQVL-------------KSARVMKAA 70 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH---------HHHHHHHHHHHHHHHccCCCcHHHHH-------------HHHHHHHHH
Confidence 78899999999999987655431 2333333332 344555554221 234455555
Q ss_pred HHHH---HHHcCCC--ccCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCcHHHHHHHhhcCCeeEEeecCCC
Q 026727 116 CEAS---LKRLDVD--YIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQMEYSL 189 (234)
Q Consensus 116 ~~~s---L~~Lg~d--~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~ 189 (234)
+... +...... ..--+++-.+..+..--...=.-.-|+..| .|-++|+.. +++.+.+++...+++++.+....
T Consensus 71 l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~ 149 (213)
T cd02069 71 VAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLL 149 (213)
T ss_pred HHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccch
Confidence 5555 3322210 112234444433222112222222345567 677888654 45556666555677787776555
Q ss_pred CCCCch-hcHHHHHHHCCe
Q 026727 190 WTREIE-DDIIPLCRFLHI 207 (234)
Q Consensus 190 ~~~~~~-~~l~~~~~~~gi 207 (234)
..+-.. .++++.+++.+.
T Consensus 150 ~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred hccHHHHHHHHHHHHhcCC
Confidence 443222 778888888764
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=80.53 E-value=5 Score=32.55 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=43.7
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecC
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~ 187 (234)
..+|.|++=+.+........+.+ ..+.+.+.. .+.+..+||. |-+++.+.++++..+++++|+.-
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 56899998886433322233443 333333332 3568889997 67889999999888999999843
No 40
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=80.46 E-value=13 Score=30.96 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHH--------------------HHhcCCCCceEEEeeeccccC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGK--------------------ALKQLPRDKIQLATKFGCFML 98 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~--------------------al~~~~R~~~~i~tK~~~~~~ 98 (234)
.+.++..++.++|-+.||.|+=|..... +-..+-+ .+. .....++|+|-.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~----s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A-~tgkPvIlSTG~----- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE----SVDFLEELGVPAYKIASGDLTNLPLLEYIA-KTGKPVILSTGM----- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH----HHHHHHHHT-SEEEE-GGGTT-HHHHHHHH-TT-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH----HHHHHHHcCCCEEEeccccccCHHHHHHHH-HhCCcEEEECCC-----
Confidence 4788999999999999999998764332 2222211 111 234456777654
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHH-HHHHHHHHHHcCcccEEecCCCcHHH
Q 026727 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIED-TMGELKKLVEEGKIKYIGLSEASADT 170 (234)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvsn~~~~~ 170 (234)
.+.+.|.++++...++-+ -++.++|+.... .+.++ -++.+..|++.=- --||.|.|+...
T Consensus 123 --------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 123 --------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp ----------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred --------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 246677777776644443 689999998543 33333 3666666665422 468999998653
No 41
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=80.32 E-value=7 Score=30.56 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=64.3
Q ss_pred HcCCCEEeCCc--------CcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcC--CCCCHHHHHHHHHHHHHH
Q 026727 53 NRGITLFDTSD--------VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIG--VKGSPEYVRKCCEASLKR 122 (234)
Q Consensus 53 ~~Gin~~DtA~--------~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~--~~~~~~~i~~~~~~sL~~ 122 (234)
..+|-++||-. .|. |+.+..+-..|+ ..|-++.|.++---.+.+++.-+ ...++..+.+-+++.|++
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~--gr~~P~~~~~i~-~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~ 154 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE--GREHPFLQALIA-EYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEE 154 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc--ccCCchHHHHHh-hcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHH
Confidence 35999999943 444 445556666666 46777877766432222333211 223678888889999999
Q ss_pred cCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC
Q 026727 123 LDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (234)
Q Consensus 123 Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (234)
-+..| ..|..++.......++++.+++..++
T Consensus 155 ~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 155 NNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred hCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 87666 45566555556667888888888766
No 42
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=80.28 E-value=16 Score=32.94 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=28.8
Q ss_pred cceecccccCC----CCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHH
Q 026727 23 RLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEI 73 (234)
Q Consensus 23 ~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~ 73 (234)
++.+|..+|.. .-+...+.+++.+.+..+.+.|+.-+-.--.||-|+++.+
T Consensus 150 RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~ 204 (416)
T COG0635 150 RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLE 204 (416)
T ss_pred EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHH
Confidence 66666666543 1233335566667777777777766555556664343333
No 43
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=78.03 E-value=27 Score=29.38 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC------CCHHHHHHHHHHHHHcCcccEEecCCCc---HHHHHHHhh
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGKIKYIGLSEAS---ADTIRRAHA 176 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iGvsn~~---~~~l~~~~~ 176 (234)
.++.+...+ +-+.|.++|+++|++-+....... ..-.+.++.+.++.+ +..+..+++... .+.++.+.+
T Consensus 16 ~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 355555544 555699999999999766543211 011456666666553 245556655433 455555544
Q ss_pred cCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEe
Q 026727 177 VHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 177 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~ 211 (234)
. .++.+.+.+..-.-+.-.+.+++++++|+ +...
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 34444443333222223778899999998 6543
No 44
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=77.82 E-value=9.7 Score=32.46 Aligned_cols=100 Identities=10% Similarity=0.023 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeec
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~ 186 (234)
++.+. +..+-+.|.++|+++|++-.+..|.....+.+.++.+..+.+...++...+. .+...++.+++. .++.+.+-
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CCCEEEEE
Confidence 44443 3446667999999999997555453222233346666666554446655554 477888888775 22233332
Q ss_pred CCC---------CCCC-----chhcHHHHHHHCCe-EE
Q 026727 187 YSL---------WTRE-----IEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 187 ~n~---------~~~~-----~~~~l~~~~~~~gi-v~ 209 (234)
++. -... .-.+.+++++++|+ +.
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 222 1111 11579999999999 86
No 45
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=77.41 E-value=15 Score=32.86 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKAL 79 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al 79 (234)
.+.+++.+.+..+.++|+..+-.--.||-||++++-+-+-+
T Consensus 148 ~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl 188 (400)
T PRK07379 148 HRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASL 188 (400)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHH
Confidence 34455555555555555543322234554344444443333
No 46
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=76.69 E-value=48 Score=28.56 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHHcCCCccCeEEEecCCC-----CCCHHHHHHHHHHHHHcCccc-EEecCC---CcHHHHHHHhhcC-CeeEEeec
Q 026727 117 EASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEEGKIK-YIGLSE---ASADTIRRAHAVH-PITAVQME 186 (234)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir-~iGvsn---~~~~~l~~~~~~~-~~~~~q~~ 186 (234)
+...++.| .|++.+|-... +.+..|+.+.||++.+.=+|- .||=|. -+++.++++.+.. .=.+....
T Consensus 157 rk~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 34456777 57788886543 346789999999998876665 467665 3577888887752 22233333
Q ss_pred CCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 187 YSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
.|+-. + -..+.+.+.++|= |++|+++
T Consensus 234 anldl-D-y~~ia~AA~ky~H~VLswt~~ 260 (403)
T COG2069 234 ANLDL-D-YERIAEAALKYDHVVLSWTQM 260 (403)
T ss_pred ccccc-C-HHHHHHHHHhcCceEEEeecc
Confidence 34322 2 2789999999999 9999998
No 47
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=76.09 E-value=20 Score=31.67 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh 134 (234)
.+.+.+.+.++..++ |+.++|.+|.+.
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~ 193 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLT 193 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeE
Confidence 456777777766653 677777777665
No 48
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=76.03 E-value=44 Score=27.66 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=84.2
Q ss_pred HHHHHcCCCEEeCCcC-cCC-CChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCC
Q 026727 49 KETFNRGITLFDTSDV-YGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVD 126 (234)
Q Consensus 49 ~~A~~~Gin~~DtA~~-Yg~-~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d 126 (234)
..|++.|..+||.=+. -|. +......+. .+........-||..++-.+ ..|..+..+....- .-|.|
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~~~a-~~Gvd 82 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIR-EIVAAVPGRKPVSATIGDLP---------MKPGTASLAALGAA-ATGVD 82 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHHcCCCCceEEEecCCC---------CCchHHHHHHHHHH-hcCCC
Confidence 5678899999997432 221 123444454 33333334467888887544 34666665555544 45889
Q ss_pred ccCeEEEecCCCCCCHHHHHHHH----HHHHHcCcccEEecCCCc------HHHHHHHhhcCCeeEEeec------CCCC
Q 026727 127 YIDLYYQHRVDTSVSIEDTMGEL----KKLVEEGKIKYIGLSEAS------ADTIRRAHAVHPITAVQME------YSLW 190 (234)
Q Consensus 127 ~iDl~~lh~~~~~~~~~~~~~~l----~~l~~~G~ir~iGvsn~~------~~~l~~~~~~~~~~~~q~~------~n~~ 190 (234)
|+-+=+.-..+.+. -.+.|+.+ .+.-.+.++-..+.+.+. +..+-++.....++.+++. -+++
T Consensus 83 yvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~ 161 (235)
T PF04476_consen 83 YVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLF 161 (235)
T ss_pred EEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchh
Confidence 88886654332211 11233332 222233467778888873 4455555554567777763 2333
Q ss_pred CC---CchhcHHHHHHHCCe-EE
Q 026727 191 TR---EIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 191 ~~---~~~~~l~~~~~~~gi-v~ 209 (234)
+. +...++++.|+++|+ +=
T Consensus 162 d~~~~~~L~~Fv~~ar~~gL~~a 184 (235)
T PF04476_consen 162 DHLSEEELAEFVAQARAHGLMCA 184 (235)
T ss_pred hcCCHHHHHHHHHHHHHccchhh
Confidence 32 223789999999999 53
No 49
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=75.68 E-value=24 Score=29.58 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEE-ecCCCC-CCHHHHH----HHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VSIEDTM----GELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~~~~~~----~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~ 180 (234)
++.+.+.+..++.+ .-|.++||+-.. -+|... .+.++-+ ..++.+++.-.+. |.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45555555555543 558899998532 234322 2333333 3445555553333 88889999999999987543
Q ss_pred eEEeecCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 181 TAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
-+|-+ +....+ +++++.++++|. ++.+.
T Consensus 99 iINdi--sg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 IINDV--SGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 33333 333322 579999999999 88854
No 50
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=75.49 E-value=24 Score=28.74 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCC-cCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTS-DVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
.+.++..+++....++||..|++. +..+ ....+.+.+..+..+. ..+.+... ...+.++..++
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~--~~~~~~v~~~~~~~~~--~~~~~~~~------------~~~~~i~~~~~ 74 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFAS--EDDFEQVRRLREALPN--ARLQALCR------------ANEEDIERAVE 74 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSS--HHHHHHHHHHHHHHHS--SEEEEEEE------------SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccC--HHHHHHhhhhhhhhcc--cccceeee------------ehHHHHHHHHH
Confidence 377888999999999999999998 3333 2233344444332223 22222221 22555666565
Q ss_pred HHHHHcCCCccCeEEEecC-----CCCCC----HHHHHHHHHHHHHcCcccEEecCC---CcHHHHHHH
Q 026727 118 ASLKRLDVDYIDLYYQHRV-----DTSVS----IEDTMGELKKLVEEGKIKYIGLSE---ASADTIRRA 174 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~-----~~~~~----~~~~~~~l~~l~~~G~ir~iGvsn---~~~~~l~~~ 174 (234)
.. ...|.+.+.++.--++ ....+ ++.+.+..+.+++.|....+++-. ++++.+.++
T Consensus 75 ~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 75 AA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLEL 142 (237)
T ss_dssp HH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHH
T ss_pred hh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHH
Confidence 33 4566666555432211 00011 334455556666777666777643 344444443
No 51
>PLN02363 phosphoribosylanthranilate isomerase
Probab=75.28 E-value=10 Score=31.82 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeec
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~ 186 (234)
+++.++.+ .++|.|++=+.+........+.+ ..+.+.+......++.+||. |-+++.+.++++..+++++|+.
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 35555544 45899999886543322334443 33334333333246679995 7889999999888899999985
No 52
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=75.25 E-value=44 Score=27.36 Aligned_cols=85 Identities=8% Similarity=-0.006 Sum_probs=45.6
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHH-HHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeEEeecCCCCCCC-c
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTRE-I 194 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 194 (234)
+.+..+| +|.+.+|..+...... --|+.+.++++.-.+.-|.... .+++.++++++....+.+.+---++... .
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 4445566 5567777654321111 1255566666655566665554 3577888887765565555522222211 1
Q ss_pred hhcHHHHHHHC
Q 026727 195 EDDIIPLCRFL 205 (234)
Q Consensus 195 ~~~l~~~~~~~ 205 (234)
..++.++|+++
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 25667777654
No 53
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.90 E-value=34 Score=28.57 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCC-----CCCHHHHHHHHHHHHHc-CcccEEecC---CCcHHHHHHHhhc
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEE-GKIKYIGLS---EASADTIRRAHAV 177 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvs---n~~~~~l~~~~~~ 177 (234)
++.+... .+-+.|.++|+++|++-+...... ..+....++.++.+++. +.++...++ ..+.+.++.+.+.
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 4444444 455558999999999975432110 01111245555555443 346655554 2345667776663
Q ss_pred CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEe
Q 026727 178 HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~ 211 (234)
.++.+.+-.+.-+.+...+.+++++++|+ +...
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 45555543333232223778999999998 6543
No 54
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=73.17 E-value=24 Score=26.63 Aligned_cols=63 Identities=8% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcC--CCccCeEEEecCCCCCCHHHHHHHHHHHHHc
Q 026727 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (234)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (234)
.|=.+.|+-|++.. ..+..|++.+.++++... ....|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45568888887642 348888888888888764 3568999999887767777777777777655
No 55
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.15 E-value=54 Score=27.36 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTS 62 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA 62 (234)
.+.++..++++...++||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 377889999999999999999987
No 56
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=72.94 E-value=21 Score=33.88 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecC
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~ 187 (234)
..+|.|++=+.+........+.+.+...+.+......+..+||- |-+++.+.++.+...++++|+.-
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 55899999887655444445555423444443333357789995 78899999998888999999854
No 57
>PRK13796 GTPase YqeH; Provisional
Probab=72.69 E-value=67 Score=28.31 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRG---ITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
.+.++..+++...-+.- +-.+|..+.-+. -...+.+... .+.-++|.+|.-.... ....+.+.+-
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~ 121 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNW 121 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHH
Confidence 46666777777776655 456786654442 2334444432 4456889999754221 1235566666
Q ss_pred HHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHH
Q 026727 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADT 170 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~ 170 (234)
++...+.+|....|++++.... ...++++++.+.+..+.+.+-.+|.+|.....
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 6666777786555777776543 45678888988888777888999999987544
No 58
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.26 E-value=43 Score=29.24 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecC--------CCCCCHHHHHHHHHHHHHc-CcccEEecCC---CcHHHHH
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEE-GKIKYIGLSE---ASADTIR 172 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~--------~~~~~~~~~~~~l~~l~~~-G~ir~iGvsn---~~~~~l~ 172 (234)
+.++.+.+.+ +-+.|.+.|+++|.+-..... ....+. ++.++.+.+. ...+...+.. .+.+.++
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~---~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTD---EEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCH---HHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 3456666555 445599999999998532110 111222 3444444322 2344444332 2567777
Q ss_pred HHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEe
Q 026727 173 RAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 173 ~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~ 211 (234)
.+.+. .++.+.+..+.-..+...+.+++++++|. +...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 77664 44555544443333334789999999999 7654
No 59
>PRK07945 hypothetical protein; Provisional
Probab=72.05 E-value=67 Score=28.01 Aligned_cols=151 Identities=12% Similarity=0.010 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCCEEeCCcCcCCC----ChhHHHHHHHHhc------CCCCceEEEeeeccccCCCCCcCCCCCHH
Q 026727 41 HEVGCSIIKETFNRGITLFDTSDVYGVD----HDNEIMVGKALKQ------LPRDKIQLATKFGCFMLDGVSIGVKGSPE 110 (234)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~~----g~sE~~lg~al~~------~~R~~~~i~tK~~~~~~~~~~~~~~~~~~ 110 (234)
.....+++.+|.+.|+..+=.+++.... +.+...+-..++. ..++ +.|-.-+-... .+..+.+
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~-I~Il~GiE~d~------~~~g~~~ 182 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP-FRILTGIEVDI------LDDGSLD 182 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC-ceEEEEeEecc------cCCCCcc
Confidence 3447899999999999988776664210 1122222222221 1122 33322221111 0011122
Q ss_pred HHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC---------------CcHHHHHHH-
Q 026727 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---------------ASADTIRRA- 174 (234)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn---------------~~~~~l~~~- 174 (234)
.. ++.|+. .||+ +.-+|+... .+..+..+.+.++.+.+.+..||=-+ +..+.+.++
T Consensus 183 ~~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~ 254 (335)
T PRK07945 183 QE----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAAC 254 (335)
T ss_pred hh----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHH
Confidence 22 223333 4555 667797643 34456778888888888888777321 222233333
Q ss_pred hhcC-CeeEEeecCCCCCCCchhcHHHHHHHCCe-EE
Q 026727 175 HAVH-PITAVQMEYSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 175 ~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
.+.. .+.+|- +.+...+...+++.|++.|+ ++
T Consensus 255 ~e~g~~lEINt---~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 255 REHGTAVEINS---RPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HHhCCEEEEeC---CCCCCCChHHHHHHHHHcCCeEE
Confidence 3332 234443 22233344789999999999 64
No 60
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.71 E-value=58 Score=27.16 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHH-HHHHHHHHcCcccEEecCCCcHHHHHHHhhc--CCeeEE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTM-GELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAV 183 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~--~~~~~~ 183 (234)
.+++.+.+..++.++ -|.|+||+-. .|. ..+-++.+ +.+..+.+.-.+ -|.|-+++++.++++++. ...-+|
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 456777777777765 5999999854 232 22322323 332222222122 378889999999999986 443344
Q ss_pred eecCCCCCC-CchhcHHHHHHHCCe-EEEeec
Q 026727 184 QMEYSLWTR-EIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 184 q~~~n~~~~-~~~~~l~~~~~~~gi-v~a~sp 213 (234)
-+ +.... +..+.+++.++++|. ++.+..
T Consensus 98 sI--s~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 98 SI--NLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred eC--CCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 43 33321 112678899999998 777643
No 61
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=70.58 E-value=59 Score=28.38 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEE--------e-cCCCCCCHHHHHHHHHHHHHcCcccEEecCC---CcHHHHHH
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQ--------H-RVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---ASADTIRR 173 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~l--------h-~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn---~~~~~l~~ 173 (234)
.++.+.+.+ +-+.|.+.|+++|++-.. . .+.. .+..+.++++.+..+. .+...+.. .+.+.++.
T Consensus 20 ~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVKR--AKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred cCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCCC--CEEEEEeccCccCHHHHHH
Confidence 455555544 555689999999998522 1 1211 1222333333333322 33332322 25677777
Q ss_pred HhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEe
Q 026727 174 AHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 174 ~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~ 211 (234)
+.+. .++.+.+-.+.-..+...+.+++++++|. +...
T Consensus 96 a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 7664 44555554443333333788999999998 6543
No 62
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=69.41 E-value=29 Score=30.53 Aligned_cols=81 Identities=9% Similarity=-0.009 Sum_probs=56.5
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 205 (234)
+++.++..|-+. +-++.+.+|++...+. ..|=|-++...+..+++...++++|+...-.-. ....++.+.|+++
T Consensus 189 ~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~ 264 (361)
T cd03322 189 YRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLY 264 (361)
T ss_pred cCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 355556555332 2367777788776665 566666888999999888778899987665431 1127899999999
Q ss_pred Ce-EEEee
Q 026727 206 HI-FLPYN 212 (234)
Q Consensus 206 gi-v~a~s 212 (234)
|+ +..++
T Consensus 265 gi~~~~h~ 272 (361)
T cd03322 265 GVRTGWHG 272 (361)
T ss_pred CCeeeccC
Confidence 99 87653
No 63
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.64 E-value=9.9 Score=33.39 Aligned_cols=95 Identities=11% Similarity=0.007 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCCccCeEEEecCCCC---CCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeec
Q 026727 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (234)
Q Consensus 110 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~ 186 (234)
..-+..+-+.|.++|+++|++-..-.|... .+.+++++++. +...++..+++ .+...++.+++.. .+.+.+.
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g-~~~v~i~ 141 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAG-AKEVAVF 141 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcC-cCEEEEE
Confidence 344556777799999999998644444221 22334555554 32334555554 4788898888762 2222222
Q ss_pred ---------CCCCCCCch-----hcHHHHHHHCCe-EE
Q 026727 187 ---------YSLWTREIE-----DDIIPLCRFLHI-FL 209 (234)
Q Consensus 187 ---------~n~~~~~~~-----~~l~~~~~~~gi-v~ 209 (234)
.|+-....+ .+++++++++|+ +.
T Consensus 142 ~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 142 ASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 222121111 479999999999 85
No 64
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=67.95 E-value=63 Score=26.23 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
++++...+.+.|.++|..|+=|+..|+.+|-+..-+- .+++.-+++ +-.|..... .+.+...+-++.-
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~-~m~~~v~~~--v~IKaaGGi---------rt~~~a~~~i~aG 197 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVR-LMRNTVGDT--IGVKASGGV---------RTAEDAIAMIEAG 197 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHH-HHHHHhccC--CeEEEeCCC---------CCHHHHHHHHHHh
Confidence 5677889999999999999999999974343333222 222221222 333432211 2578888888888
Q ss_pred HHHcCCCc
Q 026727 120 LKRLDVDY 127 (234)
Q Consensus 120 L~~Lg~d~ 127 (234)
-.|+|++.
T Consensus 198 a~riGts~ 205 (211)
T TIGR00126 198 ASRIGASA 205 (211)
T ss_pred hHHhCcch
Confidence 89999865
No 65
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=67.87 E-value=78 Score=27.12 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-cHHHHHHHhhcCCeeEEeec
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQME 186 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q~~ 186 (234)
+++.+++.++..++ .+-+.+--+-++..+...+.+.....++.+++.|+--.+=++.. +...+..++....++..---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 36677777776664 22222222233433333445667778888888887665555543 23344444432222211111
Q ss_pred CCCCCCCchhcHHHHHHHCCeEEEeecc
Q 026727 187 YSLWTREIEDDIIPLCRFLHIFLPYNPS 214 (234)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~giv~a~spl 214 (234)
+++ .+ .++.++..+++|+.+...|.
T Consensus 217 ~~l--~~-~~~~i~~l~~~gi~v~~cP~ 241 (324)
T TIGR01430 217 VRA--LE-DPELLKRLAQENITLEVCPT 241 (324)
T ss_pred hhh--cc-CHHHHHHHHHcCceEEECCc
Confidence 111 11 25688999999993344444
No 66
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=67.87 E-value=25 Score=31.94 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEec
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR 135 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~ 135 (234)
.+.+.+++.++..++ |+.++|++|.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 467777777776654 8888888887753
No 67
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=67.58 E-value=25 Score=31.96 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEE-ecCCC----------CC-CHHH----HHHHHHHHHHcCcccEEecCCCcH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDT----------SV-SIED----TMGELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~----------~~-~~~~----~~~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
.+.+.+.+.++..+ +|+.++|.+|.+ |.|.. .. +.++ ...+.+.|.+.|.. .+|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 45777777777665 588888888765 32210 01 1122 22455667778875 489999864
No 68
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=66.59 E-value=73 Score=26.31 Aligned_cols=84 Identities=7% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHcCCCccCeEEEecCCCCCCHH-HHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeEEeec--CCCCCCCch
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQME--YSLWTREIE 195 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~~q~~--~n~~~~~~~ 195 (234)
+..+| +|-+++|..+...... --|+.+.++.+.-.+.-|.-.. .+.+.+.++++....+.+.+- ++--.-. .
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~-~ 237 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEIT-I 237 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCC-H
Confidence 34555 5557777654321100 1256666666654566565554 456788777765445444441 1211111 2
Q ss_pred hcHHHHHHHCCe
Q 026727 196 DDIIPLCRFLHI 207 (234)
Q Consensus 196 ~~l~~~~~~~gi 207 (234)
.++.+.|++.||
T Consensus 238 ~~~~~~~~~~~~ 249 (253)
T PRK02083 238 GELKAYLAEQGI 249 (253)
T ss_pred HHHHHHHHHCCC
Confidence 788999999998
No 69
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=66.58 E-value=86 Score=27.11 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHc-CCCEEeCCcCcCCCC-hhHHHHHHH---HhcC-CCCceEEEeeeccccCCCCCcCCCCCHHHHH
Q 026727 40 SHEVGCSIIKETFNR-GITLFDTSDVYGVDH-DNEIMVGKA---LKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~~g-~sE~~lg~a---l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 113 (234)
+.++..+++++.-+. ||+.+--+- |.|- .+...+.+. +++. ....+.+.|+..... +..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~-----------p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD-----------PARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC-----------hhhcC
Confidence 456777888776654 887553210 1110 122233333 3322 233466777764322 34455
Q ss_pred HHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEE------ecCCCcHHHHHHHhh
Q 026727 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI------GLSEASADTIRRAHA 176 (234)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvsn~~~~~l~~~~~ 176 (234)
+.+-+.|++.|.. ..+-+|......-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 5566677777732 346777754444357899999999999952211 43 567666665543
No 70
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=66.45 E-value=71 Score=26.12 Aligned_cols=131 Identities=11% Similarity=0.135 Sum_probs=69.9
Q ss_pred CCEEeC-CcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEe
Q 026727 56 ITLFDT-SDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (234)
Q Consensus 56 in~~Dt-A~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh 134 (234)
++.++. +..|.. -+.+.+.+|.+ ...+++..+.|+........ ......+.+.+.+-+.++-|+ +.+..+++.
T Consensus 19 F~~VEvn~TFY~~--P~~~t~~~W~~-~~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q 92 (230)
T PF01904_consen 19 FNTVEVNSTFYRI--PSPETVARWRE-QTPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-EKLGPILFQ 92 (230)
T ss_dssp -SEEEE-HHCCSS--S-HHHHHHHHC-TS-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE
T ss_pred CCeEEECcccCCC--CCHHHHHHHHh-hCCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-hcceEEEEE
Confidence 666665 456773 37888898987 45578999999876542100 011235666567777999998 899999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe--EEEee
Q 026727 135 RVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI--FLPYN 212 (234)
Q Consensus 135 ~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi--v~a~s 212 (234)
-|..-..-.+.++.|+.+.+.=. ..-...+.++.--+.. +++++.++++|+ |++-+
T Consensus 93 ~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~~---~~~~~~l~~~~~~~v~~d~ 150 (230)
T PF01904_consen 93 FPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWFT---EEVFELLREHGVALVIADS 150 (230)
T ss_dssp --TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGGC---HHHHHHHHHTT-EEEEEE-
T ss_pred cCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchhh---HHHHHHHHHcCCEEEEeCC
Confidence 98754444566666666654422 0112334443322332 678888888888 44444
Q ss_pred cc
Q 026727 213 PS 214 (234)
Q Consensus 213 pl 214 (234)
|-
T Consensus 151 ~~ 152 (230)
T PF01904_consen 151 PR 152 (230)
T ss_dssp --
T ss_pred cc
Confidence 43
No 71
>PRK05588 histidinol-phosphatase; Provisional
Probab=66.32 E-value=74 Score=26.28 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCEEeCCcCcCC--C-C-----hhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHH
Q 026727 42 EVGCSIIKETFNRGITLFDTSDVYGV--D-H-----DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~--~-g-----~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 113 (234)
....+.+.+|.+.|+..+ .+++... + . .-+..+ +.+++.+..+|.+..-++.. ++ ..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~------------~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME------------KD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc------------CC-CH
Confidence 457799999999999988 7766311 0 0 011222 12222222344444444321 22 24
Q ss_pred HHHHHHHHHcCCCccCeEEEecCCCC----------CCHHH----HHHHHHHHHH-cCcccEE
Q 026727 114 KCCEASLKRLDVDYIDLYYQHRVDTS----------VSIED----TMGELKKLVE-EGKIKYI 161 (234)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~----------~~~~~----~~~~l~~l~~-~G~ir~i 161 (234)
..+++.|++...||+ +.-+|+.+.. .+.++ .++.+.++++ .|++..|
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvl 142 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSL 142 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 556777777777776 6788985321 12222 4467777776 4544433
No 72
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=66.29 E-value=14 Score=27.57 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.1
Q ss_pred CCchhcHHHHHHHCCe-EEEeeccc
Q 026727 192 REIEDDIIPLCRFLHI-FLPYNPSF 215 (234)
Q Consensus 192 ~~~~~~l~~~~~~~gi-v~a~spl~ 215 (234)
++...++++.|+++|| |++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445899999999999 99998773
No 73
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=65.96 E-value=79 Score=26.44 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEE-ecCCCC-CCHHH----HHHHHHHHHHc-CcccEEecCCCcHHHHHHHhhcCC
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VSIED----TMGELKKLVEE-GKIKYIGLSEASADTIRRAHAVHP 179 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~~~~----~~~~l~~l~~~-G~ir~iGvsn~~~~~l~~~~~~~~ 179 (234)
.+++.+.+..++.+ .-|.++||+--. -+|... .+.++ +...++.+++. +. -|.+-+++++.++.+++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 45677766666554 568899999311 123222 12232 44455555554 43 38888999999999998754
Q ss_pred eeEEeecCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 180 ITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 180 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
..++-+ +... .+++++.++++|. ++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 444443 2222 2579999999999 77754
No 74
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=65.42 E-value=41 Score=27.54 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (234)
.++++..++...+.++|..|+=|+..|+.+|.+.+.+....+.. +.+ +.-|..... .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~--~~IKasGGI---------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPR--VGVKASGGI---------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCC--ceEEeeCCc---------CCHHHHHHHHHc
Confidence 36788899999999999999999999965466676665444322 222 222322111 246666666666
Q ss_pred HHHHcCCC
Q 026727 119 SLKRLDVD 126 (234)
Q Consensus 119 sL~~Lg~d 126 (234)
--.|+|+.
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 66666654
No 75
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=65.18 E-value=90 Score=26.83 Aligned_cols=133 Identities=12% Similarity=0.075 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCC---------cCcCCCCh----hHHHHHHHHhcC-CCCceEEEeeeccccCCCCCcCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDTS---------DVYGVDHD----NEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGV 105 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA---------~~Yg~~g~----sE~~lg~al~~~-~R~~~~i~tK~~~~~~~~~~~~~ 105 (234)
+.++..+....+.++|+..||.- ..|+ |. ..+.+.+.++.. ..-++-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~--Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA--GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------ 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc--cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC------
Confidence 66788888888889999999852 1232 22 234455555532 11236688887532210
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCH--HHHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeE
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITA 182 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~ 182 (234)
+...+ ..+-+.|+..|. |.+.+|........ ...|+.+.++++.=.+.-|+... .+++.++++++....+.
T Consensus 145 --~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 145 --AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred --CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 01111 235555677774 56667754221111 13477778888766677788776 56788888886666777
Q ss_pred Eeec
Q 026727 183 VQME 186 (234)
Q Consensus 183 ~q~~ 186 (234)
+++-
T Consensus 219 Vmig 222 (319)
T TIGR00737 219 VMIG 222 (319)
T ss_pred EEEC
Confidence 7774
No 76
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.14 E-value=64 Score=29.74 Aligned_cols=71 Identities=7% Similarity=0.040 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCcccE----EecCCCcHHHHHHHhhc---CCeeEEeecCCCCCCCchhcHHHHHHHCCeEEEee
Q 026727 140 VSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPITAVQMEYSLWTREIEDDIIPLCRFLHIFLPYN 212 (234)
Q Consensus 140 ~~~~~~~~~l~~l~~~G~ir~----iGvsn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~giv~a~s 212 (234)
...++..++++.+++.|.... +|+-+.+.+.+++.++. .+++..+ ++.+...+...+.+.+++.+.+..|+
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~--~~~~tP~PGT~l~~~~~~~~~~~d~~ 397 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN--WLMYTPWPFTSLFGELSDRVEVQDYT 397 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE--EEEecCCCCcHHHHHHHhhcccCchh
Confidence 456678899999999986432 46667777776655443 3444333 35555554567777777766532443
No 77
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=64.67 E-value=82 Score=26.21 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEE-ecCCCC-CCH----HHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VSI----EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~~----~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~ 180 (234)
.+.+.+.+..++.+ .-|.|+||+-.- -+|... .+. +.....++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 45666666655554 668899999532 223221 112 2345556666555233 389999999999999988644
Q ss_pred eEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 181 TAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
-+|-+ +....+ +++++.++++|. ++.+..
T Consensus 99 iINdi--s~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 IINDV--SGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 33333 333221 579999999999 877653
No 78
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=64.24 E-value=1.1e+02 Score=27.56 Aligned_cols=85 Identities=9% Similarity=-0.074 Sum_probs=58.1
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHc------CcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chhcHHHH
Q 026727 129 DLYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPL 201 (234)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~ 201 (234)
++ ++..|-+..+.++.++.+.+|++. ..--..+=|-++.+.+.++++..-.+++|+..+-.-.- ...++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 45 788775443334557777777755 22334455557889999998887888999876654321 12789999
Q ss_pred HHHCCe-EEEeecc
Q 026727 202 CRFLHI-FLPYNPS 214 (234)
Q Consensus 202 ~~~~gi-v~a~spl 214 (234)
|+++|| +...+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 999999 8775543
No 79
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=63.78 E-value=22 Score=32.41 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecC
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~ 187 (234)
...+|.|++-+.+........+.+.+ ..+.+... ++.+||- |-+++.+.++++..+++++|+.-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG 337 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHG 337 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCC
Confidence 45678888888643332233444333 33333222 8889997 78899999998888999999854
No 80
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=63.50 E-value=50 Score=29.11 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ 133 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l 133 (234)
.+.+.+.+.++.. .+++.+++.+|.+
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l 189 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSL 189 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeece
Confidence 3455555555543 4466666665543
No 81
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=63.31 E-value=27 Score=28.44 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhh---cCCeeEE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA---VHPITAV 183 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~---~~~~~~~ 183 (234)
++.+. +..+-+.|.++|.++|++- .|.......+.++.+.+.... .+-.+++....+.++.+++ ...++.+
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 44444 4445556999999998886 333322233455555555555 4445556566666666443 2344444
Q ss_pred eecCCCCC--------------CCchhcHHHHHHHCCe-EEEeecc
Q 026727 184 QMEYSLWT--------------REIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 184 q~~~n~~~--------------~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+-.+.-+ -+.-.+.+++++++|. + .+++-
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~ 129 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCE 129 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEET
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCcc
Confidence 44322222 0112678999999999 6 44443
No 82
>PRK12928 lipoyl synthase; Provisional
Probab=62.99 E-value=74 Score=27.17 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcC---ccc---EEecCCCcHHHHHHHhh---cCCeeEEee-cCCC----------CCCC-chhcH
Q 026727 140 VSIEDTMGELKKLVEEG---KIK---YIGLSEASADTIRRAHA---VHPITAVQM-EYSL----------WTRE-IEDDI 198 (234)
Q Consensus 140 ~~~~~~~~~l~~l~~~G---~ir---~iGvsn~~~~~l~~~~~---~~~~~~~q~-~~n~----------~~~~-~~~~l 198 (234)
...++.++.++.+++.| .++ -+|+ .-+.+++.+.++ ..+++.+.+ +|.. +... ....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 45678899999999987 333 3577 545555544433 244444443 3322 1111 12678
Q ss_pred HHHHHHCCe-EEEeeccc
Q 026727 199 IPLCRFLHI-FLPYNPSF 215 (234)
Q Consensus 199 ~~~~~~~gi-v~a~spl~ 215 (234)
-+.+.+.|. .++.+||.
T Consensus 264 ~~~~~~~g~~~~~~~p~~ 281 (290)
T PRK12928 264 GQIARELGFSHVRSGPLV 281 (290)
T ss_pred HHHHHHcCCceeEecCcc
Confidence 889999999 99999994
No 83
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=62.70 E-value=92 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
+.++..++++...++||..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 678889999999999999999853
No 84
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.68 E-value=94 Score=27.59 Aligned_cols=83 Identities=13% Similarity=-0.028 Sum_probs=56.2
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHc------CcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chhcHHHHH
Q 026727 130 LYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLC 202 (234)
Q Consensus 130 l~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~ 202 (234)
++++..|-+..+.++-++.+.++.+. +.--..|=+-++...+.++++..-.+++|+..+-.-.= ...++.++|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35666664433322346677777665 33335566668899999998887888999877664421 127899999
Q ss_pred HHCCe-EEEee
Q 026727 203 RFLHI-FLPYN 212 (234)
Q Consensus 203 ~~~gi-v~a~s 212 (234)
+.+|| ++..+
T Consensus 309 ~a~Gi~~~~h~ 319 (369)
T cd03314 309 KEHGVGAYLGG 319 (369)
T ss_pred HHcCCcEEEeC
Confidence 99999 88754
No 85
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=61.88 E-value=60 Score=25.80 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=28.6
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHH
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l 171 (234)
....++ +|.++||..++ . +..+.+.+......++.+|++++....+
T Consensus 68 ia~~~~---~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 68 IAEELG---LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHhcC---CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 344454 78899997642 2 2344444433456888999998765544
No 86
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=61.58 E-value=1.3e+02 Score=27.38 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc-CCC-CceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~-~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
......+.+..+++.|.. ||.|.+.|-.+++.|.+ .+. +.+.+++- + .+....+++
T Consensus 70 ~~p~V~~Av~~~l~~G~~-------fg~Pte~Ei~~Aell~~~~p~~e~vrfvnS-G--------------TEAtmsAiR 127 (432)
T COG0001 70 AHPAVVEAVQEQLERGLS-------FGAPTELEVELAELLIERVPSIEKVRFVNS-G--------------TEATMSAIR 127 (432)
T ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHhcCcccEEEEecc-h--------------hHHHHHHHH
Confidence 456688899999999965 88778889999999876 444 44443332 2 455666666
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC-------cccEEec-----------CCCcHHHHHHHhhcC-
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-------KIKYIGL-----------SEASADTIRRAHAVH- 178 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-------~ir~iGv-----------sn~~~~~l~~~~~~~- 178 (234)
-...--|.|.|=.|-=+.-.. .+.+ |++.| .-.+-|+ .-.+.+.++++.+..
T Consensus 128 lARa~TgR~kIikF~G~YHG~---~D~~------lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g 198 (432)
T COG0001 128 LARAYTGRDKIIKFEGCYHGH---SDSL------LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYG 198 (432)
T ss_pred HHHHhhCCCeEEEEcCCCCCC---ccHH------HhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcC
Confidence 666666655432221110000 0000 11111 1112222 223467777777663
Q ss_pred -CeeEE-----eecCCCCCCCch--hcHHHHHHHCCe-EEEee
Q 026727 179 -PITAV-----QMEYSLWTREIE--DDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 179 -~~~~~-----q~~~n~~~~~~~--~~l~~~~~~~gi-v~a~s 212 (234)
.+..| +.+.++..+.++ +.|.+.|+++|+ +|-=.
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DE 241 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDE 241 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEec
Confidence 34444 334555555444 889999999999 76433
No 87
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=61.36 E-value=73 Score=26.79 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=52.6
Q ss_pred CHH-HHHHHHHHHHHcCCCEEeCCcCcCCCChhHHH---HHHHHhcC-CCCceEEEeeeccccCCCCCcCCCCCHHHHHH
Q 026727 40 SHE-VGCSIIKETFNRGITLFDTSDVYGVDHDNEIM---VGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (234)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~---lg~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (234)
+++ +...+.+.|.++|..|+=|+..|+.+|-+.+. +-+++++. ..++ +.-|...-. .+.+...+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGGI---------rt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGGV---------RTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCCC---------CCHHHHHH
Confidence 445 58889999999999999999999853444333 33333321 1122 344442222 35888888
Q ss_pred HHHHHHHHcCCCccC
Q 026727 115 CCEASLKRLDVDYID 129 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iD 129 (234)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 899999999988876
No 88
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=61.16 E-value=38 Score=29.75 Aligned_cols=67 Identities=7% Similarity=-0.032 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHCCe-EEEee
Q 026727 146 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 146 ~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi-v~a~s 212 (234)
++.+.+|++...+. +.|=|-++...+.++++....+++|+...-.-. .....+...|+.+|+ ++..+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~ 296 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGT 296 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 66666777765554 566667888888888887778888886665432 112689999999999 87654
No 89
>PRK09061 D-glutamate deacylase; Validated
Probab=60.68 E-value=1.2e+02 Score=28.05 Aligned_cols=112 Identities=9% Similarity=-0.003 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHc
Q 026727 44 GCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRL 123 (234)
Q Consensus 44 ~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 123 (234)
..++++.|++.|...|=+...|-+ +.+...+-+.++...+-+..|......... .++.....++++.++..
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHH
Confidence 667788899999999987666743 445555665665544556777776643220 11222233344444322
Q ss_pred CCCccCeEEEecCCC-CCCHHHHHHHHHHHHHcCcccEEecC
Q 026727 124 DVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLS 164 (234)
Q Consensus 124 g~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs 164 (234)
...-.-+.+.|-... ..+..+.++.+++++++|.--..-++
T Consensus 242 ~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 242 AETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 211133666775432 23456788999999999854444443
No 90
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=60.63 E-value=46 Score=28.73 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=58.3
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~ 205 (234)
.++.++..|-. .+-++.+.++++.-.+. ..|=|-++...+..+++...++++|+...-.-.- ...++...|+++
T Consensus 198 ~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~ 273 (324)
T TIGR01928 198 YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREH 273 (324)
T ss_pred CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHc
Confidence 35666766533 23467777887765554 5666778899999998888889999876554321 126899999999
Q ss_pred Ce-EEEeecc
Q 026727 206 HI-FLPYNPS 214 (234)
Q Consensus 206 gi-v~a~spl 214 (234)
|+ ++..+.+
T Consensus 274 gi~~~~~~~~ 283 (324)
T TIGR01928 274 GAKVWIGGML 283 (324)
T ss_pred CCeEEEcceE
Confidence 99 8765544
No 91
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.58 E-value=1.2e+02 Score=26.62 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=50.3
Q ss_pred CceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCC--CC---CC--HHHHHHHHHHHHHcCc
Q 026727 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--TS---VS--IEDTMGELKKLVEEGK 157 (234)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~--~~---~~--~~~~~~~l~~l~~~G~ 157 (234)
.++.|..|+.......+ ..+.+.. ..+-+.|+..|+|||++ |... .. .. ....++.+.+.++ +.
T Consensus 214 ~~~~v~~R~s~~~~~~~----g~~~ee~-~~i~~~L~~~GvD~I~V---s~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~ 284 (353)
T cd04735 214 KDFILGYRFSPEEPEEP----GIRMEDT-LALVDKLADKGLDYLHI---SLWDFDRKSRRGRDDNQTIMELVKERIA-GR 284 (353)
T ss_pred CCceEEEEECcccccCC----CCCHHHH-HHHHHHHHHcCCCEEEe---ccCccccccccCCcchHHHHHHHHHHhC-CC
Confidence 57889999876442111 2344443 34555667778666555 3211 10 11 1233344444332 45
Q ss_pred ccEEecCCC-cHHHHHHHhhcCCeeEEee
Q 026727 158 IKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 158 ir~iGvsn~-~~~~l~~~~~~~~~~~~q~ 185 (234)
+.-|++... +++.++++++. ..+.+.+
T Consensus 285 iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~ 312 (353)
T cd04735 285 LPLIAVGSINTPDDALEALET-GADLVAI 312 (353)
T ss_pred CCEEEECCCCCHHHHHHHHHc-CCChHHH
Confidence 677888875 78889888886 4555544
No 92
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=60.35 E-value=1.2e+02 Score=26.55 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTS 62 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA 62 (234)
.+.++..+++....++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 478899999999999999999984
No 93
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.17 E-value=39 Score=27.26 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcC-CeeEEeec
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQME 186 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~-~~~~~q~~ 186 (234)
++...+ +-+.|.+-|+.-+.+=+ -. .+..+.+++++++.-=-.||..+ .+.++++++++.. .|.+
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv---- 81 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV---- 81 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE----
Confidence 444443 44455566766555522 11 13566666666554335689988 6788999888763 4432
Q ss_pred CCCCCCCchhcHHHHHHHCCe-EEE
Q 026727 187 YSLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
++.. .++++++|+++|| ++.
T Consensus 82 -SP~~---~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -SPGT---TQELLAAANDSDVPLLP 102 (201)
T ss_pred -CCCC---CHHHHHHHHHcCCCEeC
Confidence 3322 3789999999999 773
No 94
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=59.90 E-value=1.2e+02 Score=26.33 Aligned_cols=135 Identities=10% Similarity=0.033 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcC----------cCCC-ChhHHHHHHHHhcC-CCCceEEEeeeccccCCCCCcCCCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDV----------YGVD-HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKG 107 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~----------Yg~~-g~sE~~lg~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 107 (234)
+.++..+..+.+.+.|+..||.--. +|.. .+.-+.+.+.++.. .--++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 5677777777788899999994211 1110 01233333333321 0114567777753221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCH--HHHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeEEe
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~~q 184 (234)
+.... ..+-+.++..| +|.+.+|........ ..-|+.+.++++.=.|.-||... .+++.++++++....+.+|
T Consensus 147 ~~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNC-VEIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchH-HHHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 11111 13334466677 466788865422111 12477888888877788888887 4788888888766777777
Q ss_pred ec
Q 026727 185 ME 186 (234)
Q Consensus 185 ~~ 186 (234)
+-
T Consensus 223 iG 224 (321)
T PRK10415 223 IG 224 (321)
T ss_pred EC
Confidence 74
No 95
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=59.64 E-value=92 Score=27.08 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHHHHcCCCccCeEEEec-CCC-CCCHHHHHHHHHHHHHcCccc-EEecCCC---cHHHHHHHhhcC---CeeEEeecCC
Q 026727 118 ASLKRLDVDYIDLYYQHR-VDT-SVSIEDTMGELKKLVEEGKIK-YIGLSEA---SADTIRRAHAVH---PITAVQMEYS 188 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~ir-~iGvsn~---~~~~l~~~~~~~---~~~~~q~~~n 188 (234)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+- .|..|.. +++.++++++.. ++-++-.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSa--- 159 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSA--- 159 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEEC---
Confidence 444688988888865432 221 223334444444443332222 2665532 678888887752 2433332
Q ss_pred CCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 189 LWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 189 ~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
+.+.-..+.+.|+++|. +++.+|.
T Consensus 160 --t~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 160 --EEDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred --CHHHHHHHHHHHHHhCCeEEEEcHH
Confidence 22223789999999999 9999875
No 96
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=59.46 E-value=83 Score=27.70 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh 134 (234)
.+.+.+.+.++..+ .++.+++.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 45666666666443 4777777776655
No 97
>smart00642 Aamy Alpha-amylase domain.
Probab=59.35 E-value=13 Score=28.91 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=16.3
Q ss_pred hhcHHHHHHHCCe-EEEeecc
Q 026727 195 EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 195 ~~~l~~~~~~~gi-v~a~spl 214 (234)
...+++.|+++|| |+.=-++
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 3899999999999 8865554
No 98
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=59.35 E-value=76 Score=28.36 Aligned_cols=82 Identities=7% Similarity=0.044 Sum_probs=56.9
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 205 (234)
.++.++..|-+. +-++.+.+|++.-.+. +.|=|-++...++++++..-++++|+...-.-. ....++.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 455666655332 2367777787776555 556666889999999888778899986655431 1127899999999
Q ss_pred Ce-EEEeec
Q 026727 206 HI-FLPYNP 213 (234)
Q Consensus 206 gi-v~a~sp 213 (234)
|+ ++.++.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 99 887543
No 99
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=58.04 E-value=60 Score=29.25 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC
Q 026727 46 SIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV 125 (234)
Q Consensus 46 ~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 125 (234)
.+|.+++++|-- -..-.||+||---+-+++.|.+...-.+.-.+-+. .+.+.+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~~l--~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------------~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGHL--HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------------SGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCCC--ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------------ccHHHHHHHHHHHHHHHhc
Confidence 578889988743 23346999888889999999862222222211111 3478899999999888875
Q ss_pred CccCeEEE---ecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcH
Q 026727 126 DYIDLYYQ---HRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 126 d~iDl~~l---h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
..==++++ |+.+. ..=++|.-.++.|.|-.||.++-||
T Consensus 103 gr~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCCC
Confidence 55556666 44433 2346777889999999999998654
No 100
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=58.02 E-value=1.2e+02 Score=26.71 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDV 64 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~ 64 (234)
.+.++..++....-+.||..|+....
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p 44 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFP 44 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 37788889999999999999997543
No 101
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=57.99 E-value=1.4e+02 Score=26.66 Aligned_cols=150 Identities=11% Similarity=0.043 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (234)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (234)
+.++..+.+..+++ .|++.|=.-..-.++....+.+ +++++.-. ++.|..-... .++++. ..+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v-~avRea~~-~~~l~vDaN~----------~w~~~~----A~~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAV-KALAEAFP-GARLRLDPNG----------AWSLET----AIR 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHH-HHHHHhCC-CCcEEEeCCC----------CcCHHH----HHH
Confidence 45666666677775 6999875422111101112223 34443212 3434333221 134443 333
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chh
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IED 196 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 196 (234)
.+++|. - ++.++..|-. -++.+.+|++...+. +.|=|-++..++.++++..-++++|....-.-.- ...
T Consensus 232 ~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 334553 2 6777776643 367777788776555 5555667888899988887888998876544311 127
Q ss_pred cHHHHHHHCCe-EEEeecc
Q 026727 197 DIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 197 ~l~~~~~~~gi-v~a~spl 214 (234)
++.+.|+++|+ +..++..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 89999999999 8877654
No 102
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.67 E-value=1.3e+02 Score=26.25 Aligned_cols=151 Identities=10% Similarity=0.016 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHH
Q 026727 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (234)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 120 (234)
.++..+.+..+++.|++.|=.--.... -..+...=+++++.-.+++.|..-... .++.+...+-+ +.|
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~-~~l 209 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPT-ADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERG-QAL 209 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCC-hHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 455566667777888876532111111 112222233555433335544433211 14454433222 223
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chhcH
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDI 198 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l 198 (234)
+. .++.++..|-... -++.+.++++.--|. +.|=+.++...+.++++...++++|+..+-.-.- ...++
T Consensus 210 ~~-----~~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~i 280 (355)
T cd03321 210 DQ-----EGLTWIEEPTLQH----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRA 280 (355)
T ss_pred Hc-----CCCCEEECCCCCc----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHH
Confidence 33 3566677664432 356677777664443 4455568899999998877788888866654321 12689
Q ss_pred HHHHHHCCe-EEEee
Q 026727 199 IPLCRFLHI-FLPYN 212 (234)
Q Consensus 199 ~~~~~~~gi-v~a~s 212 (234)
.++|+.+|+ ++...
T Consensus 281 a~~A~~~gi~~~~h~ 295 (355)
T cd03321 281 SALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHcCCeecccc
Confidence 999999999 87543
No 103
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=57.38 E-value=1.3e+02 Score=26.24 Aligned_cols=79 Identities=5% Similarity=0.005 Sum_probs=54.3
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHCC
Q 026727 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFLH 206 (234)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 206 (234)
++.++..|-+. +-++.+.+|.++..+. ++|=+-++...+.++++...++++|+...-.-. ....++..+|+++|
T Consensus 215 ~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 215 GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 45566666432 2367777788776555 555556788889998887778888886555432 11278999999999
Q ss_pred e-EEEe
Q 026727 207 I-FLPY 211 (234)
Q Consensus 207 i-v~a~ 211 (234)
+ ++..
T Consensus 291 i~~~~~ 296 (365)
T cd03318 291 IALYGG 296 (365)
T ss_pred Cceeec
Confidence 9 8754
No 104
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=57.19 E-value=1.2e+02 Score=25.82 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-cHHHHHHHhhcCCeeEEeecC
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q~~~ 187 (234)
++.+.+.++...+. +-+.+.-+-+...+...+.++....++.+++.|+--.+=++.. +.+.+..+++...++. +.
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~--i~- 215 (325)
T cd01320 140 PESAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAER--IG- 215 (325)
T ss_pred HHHHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcc--cc-
Confidence 55566666555432 2222222222222223355666777778888776555544432 3344555554222221 11
Q ss_pred CCCCCCchhcHHHHHHHCCeEEEeec
Q 026727 188 SLWTREIEDDIIPLCRFLHIFLPYNP 213 (234)
Q Consensus 188 n~~~~~~~~~l~~~~~~~giv~a~sp 213 (234)
|...-...++.++..+++||.+...|
T Consensus 216 H~~~l~~~~~~~~~l~~~gi~v~~~P 241 (325)
T cd01320 216 HGIRAIEDPELVKRLAERNIPLEVCP 241 (325)
T ss_pred hhhccCccHHHHHHHHHcCCeEEECC
Confidence 11111112467888888888333444
No 105
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.94 E-value=1.4e+02 Score=26.19 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=57.0
Q ss_pred CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeE-EEec-CCCC----CCHHHHHHHHHHHHHcC
Q 026727 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLY-YQHR-VDTS----VSIEDTMGELKKLVEEG 156 (234)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G 156 (234)
-..++.|..|+.......+ ..+.+... .+-+.|+.+|+|+|++- -.|. +... .+.........++++.=
T Consensus 201 vG~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v 275 (353)
T cd02930 201 VGEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV 275 (353)
T ss_pred cCCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC
Confidence 3457888888875432111 13444443 44555788888887762 1231 1111 11111234455666665
Q ss_pred cccEEecCC-CcHHHHHHHhhcCCeeEEee
Q 026727 157 KIKYIGLSE-ASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 157 ~ir~iGvsn-~~~~~l~~~~~~~~~~~~q~ 185 (234)
.+.-+++.+ .+++.++++++....+.+++
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 677677766 57888999998877777776
No 106
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=56.78 E-value=1.2e+02 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
+.++..++....-++||..|+...
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec
Confidence 778889999998999999999863
No 107
>PLN02428 lipoic acid synthase
Probab=56.63 E-value=84 Score=27.69 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHc--Cccc----EEecCCCcHHHHHHHhhc---CCeeEE-----------eecCCCCCCCch-hcHH
Q 026727 141 SIEDTMGELKKLVEE--GKIK----YIGLSEASADTIRRAHAV---HPITAV-----------QMEYSLWTREIE-DDII 199 (234)
Q Consensus 141 ~~~~~~~~l~~l~~~--G~ir----~iGvsn~~~~~l~~~~~~---~~~~~~-----------q~~~n~~~~~~~-~~l~ 199 (234)
..++.++.++.+++. |..- -+|+ .-+.+++.+.++. ..++++ .++.+-+....+ ..+-
T Consensus 229 sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~ 307 (349)
T PLN02428 229 GYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWR 307 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHH
Confidence 456788999999887 6553 2577 4455555544332 333333 233344443333 7788
Q ss_pred HHHHHCCe-EEEeeccc
Q 026727 200 PLCRFLHI-FLPYNPSF 215 (234)
Q Consensus 200 ~~~~~~gi-v~a~spl~ 215 (234)
+++.+.|. .++.+||.
T Consensus 308 ~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 308 EYGEEMGFRYVASGPLV 324 (349)
T ss_pred HHHHHcCCceEEecCcc
Confidence 89999999 99999994
No 108
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=56.60 E-value=49 Score=26.72 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcC-CeeEEeec
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQME 186 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~-~~~~~q~~ 186 (234)
++... .+-+.|-.-|++-+.+=+ -. .+.++.+++++++.-=-.||..+ .++++.+++++.. .|.+
T Consensus 19 ~e~a~-~~~~al~~~Gi~~iEit~---~t-----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv---- 85 (204)
T TIGR01182 19 VDDAL-PLAKALIEGGLRVLEVTL---RT-----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV---- 85 (204)
T ss_pred HHHHH-HHHHHHHHcCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE----
Confidence 44433 345566667766555422 11 24566677777654335699988 6788999888763 3432
Q ss_pred CCCCCCCchhcHHHHHHHCCe-EEE
Q 026727 187 YSLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
++.. ..+++++|+++|| ++.
T Consensus 86 -sP~~---~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 -SPGL---TPELAKHAQDHGIPIIP 106 (204)
T ss_pred -CCCC---CHHHHHHHHHcCCcEEC
Confidence 3322 3789999999999 775
No 109
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=56.47 E-value=1.2e+02 Score=25.26 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCcHHHHHHHhhcCCeeEEee
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (234)
++.+.. ..+-+.|.++|+++|++-+ |... +.-++.++.+.+.+ .++..+.+..+.+.++.+.+. .++.+.+
T Consensus 17 ~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~~---~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i 88 (259)
T cd07939 17 FSREEK-LAIARALDEAGVDEIEVGI---PAMG---EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHI 88 (259)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEec---CCCC---HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEE
Confidence 444444 4455669999999999852 3211 22356666666643 477777777778888887765 2333333
Q ss_pred cCCCCCC---------C-----chhcHHHHHHHCCe-EEEeecccCCc
Q 026727 186 EYSLWTR---------E-----IEDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 186 ~~n~~~~---------~-----~~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
-++.-+. . .-.+.+++|+++|+ +. +++-..++
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~~ 135 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS-VGAEDASR 135 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EeeccCCC
Confidence 2211111 0 11478889999999 65 34433343
No 110
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=56.24 E-value=1.3e+02 Score=25.61 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcC-CCEEeC---CcCc-----CCCChhHHHHHHHHhcCCC-CceEEEeeeccccCCCCCcCCCCCH
Q 026727 40 SHEVGCSIIKETFNRG-ITLFDT---SDVY-----GVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSP 109 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~G-in~~Dt---A~~Y-----g~~g~sE~~lg~al~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~ 109 (234)
+.++..+..+.+.++| +..||- +++. .. +...+.+-+.++...+ -++-|..|+.+..
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~-~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------ 168 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAF-GTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------ 168 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcccc-ccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------
Confidence 5677788888888898 999875 2211 11 2355666666654222 1678889986422
Q ss_pred HHHHHHHHHHHHHcCCCccCeEE-EecC--CCC--C------------C--HHHHHHHHHHHHHcCcccEEecCCC-cHH
Q 026727 110 EYVRKCCEASLKRLDVDYIDLYY-QHRV--DTS--V------------S--IEDTMGELKKLVEEGKIKYIGLSEA-SAD 169 (234)
Q Consensus 110 ~~i~~~~~~sL~~Lg~d~iDl~~-lh~~--~~~--~------------~--~~~~~~~l~~l~~~G~ir~iGvsn~-~~~ 169 (234)
+.+ ..+-+.++..|.|.|++.- ++.. +.. . + ..-.++.+.++++.=.+--||+... +.+
T Consensus 169 ~~~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~ 247 (301)
T PRK07259 169 TDI-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAE 247 (301)
T ss_pred hhH-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 122 2344557778877665531 1111 000 0 0 0114666667766556888999884 788
Q ss_pred HHHHHhhcCCeeEEeecCCCCC-CC----chhcHHHHHHHCCe
Q 026727 170 TIRRAHAVHPITAVQMEYSLWT-RE----IEDDIIPLCRFLHI 207 (234)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 207 (234)
.+.+++... .+.+|+-=-++. +. ...++-.+..++|.
T Consensus 248 da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 248 DAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 888888754 678887322222 11 11456666666664
No 111
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=56.23 E-value=1.4e+02 Score=26.23 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEeCCcCcCCCChhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCCCCHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRG-ITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-in~~DtA~~Yg~~g~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (234)
.+.++..+.-+.|-+.| .+|...|..++ .++.-+.+-++++.++ --.+-+..-+|. .+.+.
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq----- 146 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQ----- 146 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHH-----
Confidence 35667777777888999 88888888887 3445555555665422 122333333331 22333
Q ss_pred HHHHHHcCCCccCeEEEecCCCC----------CCHHHHHHHHHHHHHcCccc----EEecCCCcHHHHHHHhhcCCee-
Q 026727 117 EASLKRLDVDYIDLYYQHRVDTS----------VSIEDTMGELKKLVEEGKIK----YIGLSEASADTIRRAHAVHPIT- 181 (234)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~~~----------~~~~~~~~~l~~l~~~G~ir----~iGvsn~~~~~l~~~~~~~~~~- 181 (234)
.+-|+.-|+|+ +-|+.+.+ .++++-++.++.+++.|.=- -+|+.+-..+.+.-+.......
T Consensus 147 ~~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~ 222 (335)
T COG0502 147 AEKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT 222 (335)
T ss_pred HHHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC
Confidence 33456677763 45655432 34678899999999988543 2455555445444443321111
Q ss_pred EEeecCCCCCC
Q 026727 182 AVQMEYSLWTR 192 (234)
Q Consensus 182 ~~q~~~n~~~~ 192 (234)
.-.+++|.+++
T Consensus 223 pdsVPIn~l~P 233 (335)
T COG0502 223 PDSVPINFLNP 233 (335)
T ss_pred CCeeeeeeecC
Confidence 34455566654
No 112
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=55.85 E-value=58 Score=29.22 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCCC-EEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccC-CCCCcCCCCCHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGIT-LFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFML-DGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~-~~~~~~~~~~~~~i~~~~~ 117 (234)
+.+.-.+-++.|++.|-. ..|-|. .|+ -.++=-..|+. ..+-|.|=--+... .......+.+++.+-+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Ggd---l~~iR~~il~~---s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GGD---LDEIRKAILDA---VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CCC---HHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 344444557999999976 555442 332 22222223332 11222221000000 0001223467888888887
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
+..+ +=+|.+.+|.-- ..+.++.++++|++ .|+.+
T Consensus 148 ~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R~--~giVS 182 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAGV-------LLEYVERLKRSGRI--TGIVS 182 (423)
T ss_pred HHHH----hCCCEEEEccch-------hHHHHHHHHhCCCc--cCeec
Confidence 7765 458889999752 46788888988865 55554
No 113
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=55.82 E-value=92 Score=25.89 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=82.8
Q ss_pred cCcceecccccCCCCCCCCCHHHHHHHHHHHHH-cCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCC
Q 026727 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLD 99 (234)
Q Consensus 21 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~ 99 (234)
-|+|-+||..+.+ .+++..|++ +|-..+=+|----+ -.....-...++..+++++.+.--.
T Consensus 8 ~SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~-~~~~~~~~~~~~~i~~~~~~lLPNT------ 69 (247)
T PF05690_consen 8 RSRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVN-LGSKPGGDNILDYIDRSGYTLLPNT------ 69 (247)
T ss_dssp S-SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGST-TTS-TTCHHCCCCTTCCTSEEEEE-------
T ss_pred ecceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEeccc-CCCCCCCccHHHHhcccCCEECCcC------
Confidence 3788999877642 355666664 46666554421111 0000000112222455665543222
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcC
Q 026727 100 GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVH 178 (234)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~ 178 (234)
....+.+.-.+..+-..+.++++.|-+=.+.++... .+..+++++-+.|+++|.+- +--++-++-..+++.+.
T Consensus 70 ----aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~- 143 (247)
T PF05690_consen 70 ----AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDA- 143 (247)
T ss_dssp ----TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHT-
T ss_pred ----CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHC-
Confidence 122567777777778888889988877666655443 35679999999999999764 44455555555555553
Q ss_pred CeeEEeecCCCCCCC----chhcHHHHHHHCCe-EEEee
Q 026727 179 PITAVQMEYSLWTRE----IEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 179 ~~~~~q~~~n~~~~~----~~~~l~~~~~~~gi-v~a~s 212 (234)
....++---+++-.. ....+-..+++.+| ||.=.
T Consensus 144 GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 144 GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 333333323333221 01234444556688 76544
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.79 E-value=2.2e+02 Score=28.21 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCcHHHHHHHhhcCCeeEEee
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (234)
..+.|++.++...........-+|+|+..+... .+.+++|.+..++ ..++.|-++|.....+..+.. .+.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEEE
Confidence 355666666554433222345688888765432 3568888888877 589999999875443333332 24556
Q ss_pred cCCCCCCCch-hcHHHHHHHCCe
Q 026727 186 EYSLWTREIE-DDIIPLCRFLHI 207 (234)
Q Consensus 186 ~~n~~~~~~~-~~l~~~~~~~gi 207 (234)
+|..+....- ..|...|++.||
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI 196 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERI 196 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCC
Confidence 6666654311 334455666666
No 115
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.78 E-value=1.5e+02 Score=26.26 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=70.4
Q ss_pred CCHHHHHHHHH-------HHHHcCCCEEeC--C-----------------cCcCCCChhH---HHHH---HHHhcCCCCc
Q 026727 39 LSHEVGCSIIK-------ETFNRGITLFDT--S-----------------DVYGVDHDNE---IMVG---KALKQLPRDK 86 (234)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gin~~Dt--A-----------------~~Yg~~g~sE---~~lg---~al~~~~R~~ 86 (234)
++.++..++++ .|.++|+..++- | +.|| |.-| +++- +++++.-.++
T Consensus 134 mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYG--GslenR~Rf~~eii~air~~vG~d 211 (361)
T cd04747 134 MTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYG--GSLAARSRFAAEVVKAIRAAVGPD 211 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46666655544 566789998873 2 2344 3222 1222 2333333457
Q ss_pred eEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC-
Q 026727 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE- 165 (234)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn- 165 (234)
+.|..|+......+.......+++...+ +-+.|+..|+|+|++-.-.+..+...- ..+....++++.-.+.-+++.+
T Consensus 212 ~~v~vRis~~~~~~~~~~~g~~~~e~~~-~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~~~pv~~~G~i 289 (361)
T cd04747 212 FPIILRFSQWKQQDYTARLADTPDELEA-LLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLTGLPTITVGSV 289 (361)
T ss_pred CeEEEEECcccccccccCCCCCHHHHHH-HHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHcCCCEEEECCc
Confidence 7888898753211100011245555533 333467778777665221000111100 0122223344433455555554
Q ss_pred ------------------CcHHHHHHHhhcCCeeEEee
Q 026727 166 ------------------ASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 166 ------------------~~~~~l~~~~~~~~~~~~q~ 185 (234)
.+++.++++++....+.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 290 GLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred ccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 37788888888766666554
No 116
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.75 E-value=1.3e+02 Score=25.70 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=53.4
Q ss_pred CCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCC----------CHHHHHHHHHHHH
Q 026727 84 RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----------SIEDTMGELKKLV 153 (234)
Q Consensus 84 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----------~~~~~~~~l~~l~ 153 (234)
.+++.|..|+....... ...+.+... .+-+.|+.+|.|+|+ ++...... .....++.+..++
T Consensus 206 g~d~~i~vris~~~~~~----~g~~~~e~~-~la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir 277 (327)
T cd02803 206 GPDFPVGVRLSADDFVP----GGLTLEEAI-EIAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIK 277 (327)
T ss_pred CCCceEEEEechhccCC----CCCCHHHHH-HHHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHH
Confidence 35788999987643111 113444443 344456777766554 34322111 0122345555666
Q ss_pred HcCcccEEecCCC-cHHHHHHHhhcCCeeEEee
Q 026727 154 EEGKIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 154 ~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q~ 185 (234)
+.=.+.-++..+. +++.++++++....+.+++
T Consensus 278 ~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 278 KAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 6555667777775 4888888888766777776
No 117
>PRK06740 histidinol-phosphatase; Validated
Probab=55.65 E-value=1.4e+02 Score=25.98 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCCccCeEEEecCCC-----CC--------C----HHHHHHHHHHHHHcCcccEEecCC------CcH---
Q 026727 115 CCEASLKRLDVDYIDLYYQHRVDT-----SV--------S----IEDTMGELKKLVEEGKIKYIGLSE------ASA--- 168 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~-----~~--------~----~~~~~~~l~~l~~~G~ir~iGvsn------~~~--- 168 (234)
.+++.|.....||+ +.-+|..+. .. + .....+.+.++++.|.+..||=-+ +.+
T Consensus 157 ~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~~ 235 (331)
T PRK06740 157 ELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDEN 235 (331)
T ss_pred HHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcchh
Confidence 45556666666776 677787531 11 1 123567888888998887776432 111
Q ss_pred ---HHHHHHhh----c-CCeeEEee-cC--CCCCCCchhcHHHHHHHCCe-EE
Q 026727 169 ---DTIRRAHA----V-HPITAVQM-EY--SLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 169 ---~~l~~~~~----~-~~~~~~q~-~~--n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
..++++++ . ..+.+|-. .+ .....-+...+++.|++.|+ ++
T Consensus 236 ~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~t 288 (331)
T PRK06740 236 EQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPIT 288 (331)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEE
Confidence 23333322 2 23444442 11 11111123689999999999 65
No 118
>PRK14017 galactonate dehydratase; Provisional
Probab=55.46 E-value=1.2e+02 Score=26.86 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=57.4
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 205 (234)
+++.++..|-+.. -++.+.+|.+...+. ..|=|-++...+..+++..-++++|+..+-.-. ....++.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 4556666654322 256777888776665 455566888999999887778899987665432 1137899999999
Q ss_pred Ce-EEEeec
Q 026727 206 HI-FLPYNP 213 (234)
Q Consensus 206 gi-v~a~sp 213 (234)
|| ++..+.
T Consensus 279 gi~~~~h~~ 287 (382)
T PRK14017 279 DVALAPHCP 287 (382)
T ss_pred CCeEeecCC
Confidence 99 887653
No 119
>PRK05414 urocanate hydratase; Provisional
Probab=54.82 E-value=36 Score=31.41 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCCEEe--CCcCcC---C----CChhHHHHHHHHhc---CCCCceEEEeeeccccCCCCC---------cC
Q 026727 46 SIIKETFNRGITLFD--TSDVYG---V----DHDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVS---------IG 104 (234)
Q Consensus 46 ~~l~~A~~~Gin~~D--tA~~Yg---~----~g~sE~~lg~al~~---~~R~~~~i~tK~~~~~~~~~~---------~~ 104 (234)
+.+...-+.|+.-+- ||-+|. + .|.-|+++.-+-+. ..+.++||++-++......+- ..
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 445566677877553 443331 1 15566666544443 346789999998865422100 01
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~ 177 (234)
...++ .+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++++.
T Consensus 196 vEvd~-------~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 196 VEVDE-------SRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EEECH-------HHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 11233 334478888998873 246889999999999999999999998888888888775
No 120
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=53.81 E-value=36 Score=31.28 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCCEEe--CCcCcC---C----CChhHHHHHHHHhc---CCCCceEEEeeeccccCCCCC---------cC
Q 026727 46 SIIKETFNRGITLFD--TSDVYG---V----DHDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVS---------IG 104 (234)
Q Consensus 46 ~~l~~A~~~Gin~~D--tA~~Yg---~----~g~sE~~lg~al~~---~~R~~~~i~tK~~~~~~~~~~---------~~ 104 (234)
+.+...-+.|+.-+- ||-+|. . .|.-|+++.-+-+. ..+..+||++-++......+- ..
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 445566677887553 443331 1 15566666544443 346788999988754422100 01
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~ 177 (234)
...++ .+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.++++.+.
T Consensus 187 vEvd~-------~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 187 VEVDE-------SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred EEECH-------HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 11223 334478888998873 246889999999999999999999999888888888875
No 121
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=53.67 E-value=1.2e+02 Score=24.72 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc------EEecCCCcH-HHHHHHhhcCCeeEE
Q 026727 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK------YIGLSEASA-DTIRRAHAVHPITAV 183 (234)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir------~iGvsn~~~-~~l~~~~~~~~~~~~ 183 (234)
.....++..-+..+...|+-+++...+......|.+.-.++|.+.|.-. +-|+++.+. -...++.....+.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 4455566666777777899999988777777788899999999999654 556666432 223444555677777
Q ss_pred eecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 184 QMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 184 q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
-.+||. +..+=.|+.+|| -+++..-
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFAAP 182 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEecCC
Confidence 666665 567888999999 8887543
No 122
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=53.38 E-value=1.6e+02 Score=26.86 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCccCeEE-------EecCCCCCCHHHHHHHHHHHHHcCcccE----EecCCCcHHHHHHHhhc---CCe
Q 026727 115 CCEASLKRLDVDYIDLYY-------QHRVDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPI 180 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~-------lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvsn~~~~~l~~~~~~---~~~ 180 (234)
.+-+.+++.|+.++-+=+ +.........+++.++++.+++.|.--. +|+-+.+.+.+++.++. .++
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~ 367 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNP 367 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 344556667766533211 1111122345677888888888885432 36667777777665443 334
Q ss_pred eEEeecCCCCCCCchhcHHHHHHHCCe-EE
Q 026727 181 TAVQMEYSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
+.++ ++++..-+...+.+.+++.|. ..
T Consensus 368 ~~~~--~~~l~P~PGT~l~~~~~~~g~~~~ 395 (472)
T TIGR03471 368 HTIQ--VSLAAPYPGTELYDQAKQNGWITQ 395 (472)
T ss_pred Ccee--eeecccCCCcHHHHHHHHCCCcCC
Confidence 4333 455554445778888888888 54
No 123
>PLN00191 enolase
Probab=52.95 E-value=1.5e+02 Score=27.10 Aligned_cols=96 Identities=6% Similarity=-0.002 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC--CCcHHHHHHHhhcCCeeEEe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS--EASADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs--n~~~~~l~~~~~~~~~~~~q 184 (234)
.+++.+.+-+++.+++ .++.++..|-... -|+.+.+|.++..+.-+|=- ..++..++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~~----D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQD----DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCcc----cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 3555555555544433 3577888775433 36677777777777766611 25688899998887788888
Q ss_pred ecCCCCCCC-chhcHHHHHHHCCe-EEEe
Q 026727 185 MEYSLWTRE-IEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 185 ~~~n~~~~~-~~~~l~~~~~~~gi-v~a~ 211 (234)
+..|-.-.- ...++++.|+++|+ ++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 877765532 12789999999999 7653
No 124
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=52.81 E-value=17 Score=25.78 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHCCe-EEEeec
Q 026727 164 SEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 164 sn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi-v~a~sp 213 (234)
+.++...++++++...++++|+...-.-. .....+.++|+++|+ +...+.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45677888888888778888886444321 112789999999999 888875
No 125
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=51.92 E-value=92 Score=27.86 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=51.0
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc-CCeeEEeecCCCCCCCc-hhcHHHHHHHCC
Q 026727 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRFLH 206 (234)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~l~~~~~~~g 206 (234)
|-+++..|.. ...+..++.+.+.+.++.+-+...+.+.++++++. .+..++..+-|+.-.-. ..++.+.|+++|
T Consensus 100 D~Vvv~~p~Y----~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDAY----GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCCc----hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 5555544432 23444455554455566566655567778777642 34555555666654322 378999999999
Q ss_pred e-EEEeecccCC
Q 026727 207 I-FLPYNPSFCL 217 (234)
Q Consensus 207 i-v~a~spl~~G 217 (234)
+ ++.=.....+
T Consensus 176 i~vIvD~a~a~~ 187 (405)
T PRK08776 176 ALTVVDNTFLSP 187 (405)
T ss_pred CEEEEECCCccc
Confidence 9 8866665443
No 126
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=51.62 E-value=1.5e+02 Score=24.97 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHH--HHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMV--GKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~l--g~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+...+.++..-+.|..+|..++.=+. +..+..+ +..|++ .-.+-..-.+.... .++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~-~~~~~t~~~a~~l~~--~~g~~~i~Hlt~r~---------~n~~~l~~~L~~~ 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGG-STRDRTVRIVRRIKK--ETGIPTVPHLTCIG---------ATREEIREILREY 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCC-CcHHHHHHHHHHHHH--hcCCCeeEEeeecC---------CCHHHHHHHHHHH
Confidence 44555566666789999999876552 2223332 333332 11222222222111 3466677766644
Q ss_pred HHHcCCCccCeEEEec-CC------CCCCHHHHHHHHHHHHHcCcccEEecCCCc--------H-HHHHHHhhc----CC
Q 026727 120 LKRLDVDYIDLYYQHR-VD------TSVSIEDTMGELKKLVEEGKIKYIGLSEAS--------A-DTIRRAHAV----HP 179 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~-~~------~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~--------~-~~l~~~~~~----~~ 179 (234)
..+|++ +++.|-. +. ....+..+.+-++.+++..---.||+..+. . ..++.+.++ ..
T Consensus 83 -~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 -RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred -HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 777754 3444432 21 112233455444555544223467776532 1 234434333 34
Q ss_pred eeEEeecCCCCCCCchhcHHHHHHHCCe
Q 026727 180 ITAVQMEYSLWTREIEDDIIPLCRFLHI 207 (234)
Q Consensus 180 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi 207 (234)
+.+-|.-|+. +.-.++++.|++.|+
T Consensus 160 f~iTQ~~fd~---~~~~~~~~~~~~~gi 184 (272)
T TIGR00676 160 YAITQLFFDN---DDYYRFVDRCRAAGI 184 (272)
T ss_pred eEeeccccCH---HHHHHHHHHHHHcCC
Confidence 7777875655 323678999999976
No 127
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=51.58 E-value=76 Score=27.26 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC----------CcCcCCCC--hhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT----------SDVYGVDH--DNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVK 106 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt----------A~~Yg~~g--~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~ 106 (234)
+++...+....+.+.|+..||- ...+|. + +.-+.+.+.++... .-++-|+.|+.....
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga-~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~-------- 134 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGA-ALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD-------- 134 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GG-GGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcCh-hhhcChHHhhHHHHhhhcccccceEEecccccc--------
Confidence 5677777777777889999993 223332 1 23445555554411 123667777654331
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCH--HHHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeEE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAV 183 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~~ 183 (234)
.+.+...+ +-+.|...| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-+
T Consensus 135 ~~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgv 210 (309)
T PF01207_consen 135 DSPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGV 210 (309)
T ss_dssp --CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEE
T ss_pred cchhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEE
Confidence 12333333 555677777 788999986443322 35688888888887787777666 677888888876556666
Q ss_pred ee
Q 026727 184 QM 185 (234)
Q Consensus 184 q~ 185 (234)
++
T Consensus 211 Mi 212 (309)
T PF01207_consen 211 MI 212 (309)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 128
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.50 E-value=95 Score=25.89 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=45.8
Q ss_pred CCCcccCcceecccccCCCCCCC--CCHHHHHHHHHHH----HHcCCCEEeCCc---CcCCCChhHHHHHHHHhc-----
Q 026727 16 SQGLEVSRLGFGCGGLSGIYNKP--LSHEVGCSIIKET----FNRGITLFDTSD---VYGVDHDNEIMVGKALKQ----- 81 (234)
Q Consensus 16 ~~g~~vs~lglG~~~~~~~~~~~--~~~~~~~~~l~~A----~~~Gin~~DtA~---~Yg~~g~sE~~lg~al~~----- 81 (234)
.+|+.+|.+||.+.+-= .+|+. ...+++.+++..| .+.|||.|--|. .|.. .+++...+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~--~d~eT~~rFi~g~~~a~ 141 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE--ADEETRQRFIEGLKWAV 141 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc--CCHHHHHHHHHHHHHHH
Confidence 57999999999875421 13332 2355566665554 578999998874 3442 244444444433
Q ss_pred --CCCCceEEEeeec
Q 026727 82 --LPRDKIQLATKFG 94 (234)
Q Consensus 82 --~~R~~~~i~tK~~ 94 (234)
..+-+|.++.-+.
T Consensus 142 ~lA~~aqV~lAvEiM 156 (287)
T COG3623 142 ELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHhhccEEEeeec
Confidence 3466777766654
No 129
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=51.24 E-value=88 Score=28.42 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEE-ecCC----------CCC-CHHH---HH-HHHHHHHHcCcccEEecCCCcH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVD----------TSV-SIED---TM-GELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
.+.+.+.+.++..++ |+.+++.+|.+ +.|. ... +.++ .+ .+.+.|.+.|. ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 467888888776554 88888888866 1121 001 1222 22 34445556676 5689999864
No 130
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=51.22 E-value=1.6e+02 Score=25.39 Aligned_cols=87 Identities=9% Similarity=-0.059 Sum_probs=46.9
Q ss_pred EEEecCCCCC-CHHHHHHHHHHHHHcCcccEEecCC---------CcHHHHHHHhhcCCeeEEeecCCCCC--CCchhcH
Q 026727 131 YYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSE---------ASADTIRRAHAVHPITAVQMEYSLWT--REIEDDI 198 (234)
Q Consensus 131 ~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvsn---------~~~~~l~~~~~~~~~~~~q~~~n~~~--~~~~~~l 198 (234)
+++-.-++-. +...+.+.++.+++.|.+..|.+.+ .+.+.++.+.+......+.++.|-.. .+...+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~a 219 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAA 219 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHH
Confidence 4444434332 2345667777777777776444433 23344444444332233444443211 1112567
Q ss_pred HHHHHHCCe-EEEeecccCC
Q 026727 199 IPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 199 ~~~~~~~gi-v~a~spl~~G 217 (234)
++.+++.|| +...++|..|
T Consensus 220 i~~L~~~Gi~v~~q~vLl~g 239 (321)
T TIGR03822 220 CARLIDAGIPMVSQSVLLRG 239 (321)
T ss_pred HHHHHHcCCEEEEEeeEeCC
Confidence 778888899 8888888765
No 131
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=51.10 E-value=93 Score=28.42 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCC--CCCHHHHHHHHHHHHHc-CcccE---------EecCCCcHHH----
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT--SVSIEDTMGELKKLVEE-GKIKY---------IGLSEASADT---- 170 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~-G~ir~---------iGvsn~~~~~---- 170 (234)
++.+...+ +-+.|.++|.+.|++.-=...+. ...-++.|+.++.+++. ..++. +|.+++.-+.
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 44444444 55558888999998830000110 00011257777777665 22332 4565554433
Q ss_pred HHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEE
Q 026727 171 IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 171 l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
++++.+ ..++++.+-..+-+.+.-.+.+++++++|. +.+
T Consensus 102 v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 344444 345566665444433333678999999997 643
No 132
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=50.90 E-value=1.4e+02 Score=24.58 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCC---hhHHHHHHHHh
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDH---DNEIMVGKALK 80 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g---~sE~~lg~al~ 80 (234)
+.++..++++.|.++|++-+=..++|-. | .+++.+.+.+.
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~-g~y~n~~~~v~~~~~ 60 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLH-GRYENPIEKVKEKAN 60 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccC-CccCChHHHHHHHHH
Confidence 7899999999999999996665555543 3 24455544443
No 133
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.44 E-value=1.5e+02 Score=24.89 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
.+.++..++.....+.||..||...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccC
Confidence 3678888888888899999999864
No 134
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=50.40 E-value=1.5e+02 Score=24.82 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc--CCeeEEee
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQM 185 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~--~~~~~~q~ 185 (234)
+.+.+.+..++. ..-|.++||+-.= +......+.....++.+++.-.+ -|.+-+++++.++++++. ..+-+|-+
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 355555554444 3668899998532 11112233344555555543222 378889999999999986 44444443
Q ss_pred cCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 186 EYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 186 ~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
|..... .+++++.++++|+ ++...
T Consensus 99 --s~~~~~-~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 99 --SAEGEK-LEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred --CCCCcc-CHHHHHHHHHhCCCEEEEe
Confidence 222211 2578999999999 77653
No 135
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.21 E-value=1.7e+02 Score=25.33 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=56.7
Q ss_pred HHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCC--C--CCH--HHHHHHHHH
Q 026727 78 ALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT--S--VSI--EDTMGELKK 151 (234)
Q Consensus 78 al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~--~~~--~~~~~~l~~ 151 (234)
++++.-.+++.|..|+....... ...+.+... .+-+.|+..|+|+|+ +|.... . .+. ...++.+++
T Consensus 213 aIR~~vG~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 213 AVRAVWPEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHcCCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHH
Confidence 33333345778899987542111 123444433 344456677765554 442110 0 111 123456666
Q ss_pred HHHcCcccEEecCCC-cHHHHHHHhhcCCeeEEee
Q 026727 152 LVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 152 l~~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q~ 185 (234)
+++.=.|.-++..+. +++..+++++....+.+++
T Consensus 285 ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 285 IRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 777666777888775 7888999988777777776
No 136
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=49.95 E-value=1.8e+02 Score=25.61 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCcHHHHHHHhhcCCeeEEee
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (234)
++.+... .+-+.|.++|+++|++- +|... +.-++.++.+.+.+ ..+..+++..+.+.++.+.+. ..+.+.+
T Consensus 20 ~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i 91 (365)
T TIGR02660 20 FTAAEKL-AIARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHI 91 (365)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEE
Confidence 4455444 45566999999988884 34321 23366677776664 367777777778888888775 2333333
Q ss_pred cCCCCC--------CCc------hhcHHHHHHHCCe-EEEeecccCCc
Q 026727 186 EYSLWT--------REI------EDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 186 ~~n~~~--------~~~------~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
-...-+ ... -.+.+++++++|. +. +++-..++
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~-~~~ed~~r 138 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS-VGGEDASR 138 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE-EeecCCCC
Confidence 222211 111 1478999999999 65 44443333
No 137
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=49.91 E-value=59 Score=30.07 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEe--CCcCcCC--C-----ChhHHHHHHHHhc---CCCCceEEEeeeccccCCC-------C--CcC
Q 026727 46 SIIKETFNRGITLFD--TSDVYGV--D-----HDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDG-------V--SIG 104 (234)
Q Consensus 46 ~~l~~A~~~Gin~~D--tA~~Yg~--~-----g~sE~~lg~al~~---~~R~~~~i~tK~~~~~~~~-------~--~~~ 104 (234)
+.+....+.|+.-+- ||-+|.- + |.-|+++.-+-+. ..+.++||++-++...... + ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 455667788988664 5544421 1 4455555433332 4577899999988544210 0 011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc---CCee
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HPIT 181 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~---~~~~ 181 (234)
...+++ +.-+|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-.+.++++++. ..+.
T Consensus 186 vEvd~~-------ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~ 251 (546)
T PF01175_consen 186 VEVDPS-------RIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLV 251 (546)
T ss_dssp EES-HH-------HHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE
T ss_pred EEECHH-------HHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 122333 344677789999842 45889999999999999999999998888888888776 2355
Q ss_pred EEeec
Q 026727 182 AVQME 186 (234)
Q Consensus 182 ~~q~~ 186 (234)
.-|..
T Consensus 252 tDQTS 256 (546)
T PF01175_consen 252 TDQTS 256 (546)
T ss_dssp ---SS
T ss_pred cCCCc
Confidence 55664
No 138
>PRK00077 eno enolase; Provisional
Probab=49.58 E-value=2e+02 Score=25.98 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC--cccEEecCC--CcHHHHHHHhhcCCeeE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE--ASADTIRRAHAVHPITA 182 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvsn--~~~~~l~~~~~~~~~~~ 182 (234)
++++...+.+.+.++. .++.++..|-+..+ |+.+.+|.++- .+.-.|=-. .++..++++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 4566666666666555 35778887755433 55555565543 454333222 36899999988877888
Q ss_pred EeecCCCCCCC-chhcHHHHHHHCCe-EEE
Q 026727 183 VQMEYSLWTRE-IEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a 210 (234)
+|+..|-.-.= ...+++..|+.+|+ ++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 88877765431 12789999999999 665
No 139
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=49.31 E-value=1.6e+02 Score=24.79 Aligned_cols=107 Identities=7% Similarity=-0.014 Sum_probs=63.0
Q ss_pred cceecccccCCCCCC-CCCHHHHHHHHHHHHHcCCCEEeC-CcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCC
Q 026727 23 RLGFGCGGLSGIYNK-PLSHEVGCSIIKETFNRGITLFDT-SDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDG 100 (234)
Q Consensus 23 ~lglG~~~~~~~~~~-~~~~~~~~~~l~~A~~~Gin~~Dt-A~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~ 100 (234)
.+|.+.|.... |.. ..++....+-..+.+...+|.++. +..|. --+++.+-+|.+ ...+++..+.|+......
T Consensus 4 ~IG~sGW~~~~-w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa--~p~~~t~~~W~~-~~p~~FrFsvK~~~~iTH- 78 (263)
T COG1801 4 YIGTSGWSYPD-WEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYA--PPSPETVLRWAE-ETPDDFRFSVKAPRAITH- 78 (263)
T ss_pred EEeecCCCccc-ccccccCcccchhhHHHHHhccCCEEEECCcccC--CCCHHHHHHHHH-hCCCCeEEEEEecccccc-
Confidence 35555555433 222 123333333334455566787775 34565 236777777887 578899999999765421
Q ss_pred CCcCCCCCH---HHHHHHHHHHHHHcCCCccCeEEEecCCCC
Q 026727 101 VSIGVKGSP---EYVRKCCEASLKRLDVDYIDLYYQHRVDTS 139 (234)
Q Consensus 101 ~~~~~~~~~---~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~ 139 (234)
..... ..+.+.+.+-++-|| +.+..+++.-|..-
T Consensus 79 ----~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 ----QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred ----hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 11112 344445555566777 58999999998654
No 140
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.21 E-value=35 Score=28.46 Aligned_cols=86 Identities=12% Similarity=-0.000 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHH
Q 026727 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (234)
....+-++.|-+.|++.++.++.+- .-+++..-++++...+..+.+-+-++...+ ......+++.+.+.+++-|+
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti--~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTI--DLPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS-----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCce--eCCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHH
Confidence 4466778888889999999988876 346666677787666777999999985442 12223456777777777777
Q ss_pred HcCCCccCeEEEecC
Q 026727 122 RLDVDYIDLYYQHRV 136 (234)
Q Consensus 122 ~Lg~d~iDl~~lh~~ 136 (234)
. | .|.+++..-
T Consensus 159 A-G---A~~ViiEar 169 (244)
T PF02679_consen 159 A-G---ADKVIIEAR 169 (244)
T ss_dssp H-T---ECEEEE--T
T ss_pred C-C---CCEEEEeee
Confidence 6 5 466777654
No 141
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=49.04 E-value=1.8e+02 Score=25.35 Aligned_cols=96 Identities=10% Similarity=-0.048 Sum_probs=53.7
Q ss_pred CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-------------CCHHHHHHHH
Q 026727 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-------------VSIEDTMGEL 149 (234)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~~~~~~l 149 (234)
...++.|..|++......+ ..+.+... .+-+.|+..| .+|++-+|..... ..-.-.|+..
T Consensus 205 vg~~~~v~iRl~~~~~~~~----G~~~~e~~-~~~~~l~~~G--~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 205 VGPDFIVGIRISGDEDTEG----GLSPDEAL-EIAARLAAEG--LIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred cCCCCeEEEEeehhhccCC----CCCHHHHH-HHHHHHHhcC--CCCEEEeCCCCCCcccccccccCCCCCCcchhHHHH
Confidence 3467889999876542111 13444443 3445556665 2444445321110 0011135555
Q ss_pred HHHHHcCcccEEecCC-CcHHHHHHHhhcCCeeEEee
Q 026727 150 KKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 150 ~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~~~~~~q~ 185 (234)
..+++.=.+--|++.+ ++++.++++++....+.+.+
T Consensus 278 ~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 278 ARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 6666654667778777 47888999988776776665
No 142
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=48.95 E-value=2.7e+02 Score=27.28 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=87.4
Q ss_pred CCHHHHHHHH-------HHHHHcCCCEEeC--C-----------------cCcCCCChhH---HH---HHHHHhcCCCCc
Q 026727 39 LSHEVGCSII-------KETFNRGITLFDT--S-----------------DVYGVDHDNE---IM---VGKALKQLPRDK 86 (234)
Q Consensus 39 ~~~~~~~~~l-------~~A~~~Gin~~Dt--A-----------------~~Yg~~g~sE---~~---lg~al~~~~R~~ 86 (234)
++.++..+++ +.|.++|+..||- | +.|| |.-| ++ +-+++++...++
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG--GSLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC--CCHHHHhHHHHHHHHHHHHhcCCC
Confidence 4556555443 4567789998885 2 2344 3222 11 223344333457
Q ss_pred eEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCC----CHH--HHHHHHHHHHHcCcccE
Q 026727 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIE--DTMGELKKLVEEGKIKY 160 (234)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----~~~--~~~~~l~~l~~~G~ir~ 160 (234)
+.|..|+.......+ ..+.+... .+-+.|+..|+|+||+ |...... ... -......++++.=.+.-
T Consensus 619 ~~v~~ri~~~~~~~~----g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 690 (765)
T PRK08255 619 KPMSVRISAHDWVEG----GNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIAT 690 (765)
T ss_pred CeeEEEEccccccCC----CCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEE
Confidence 889999886432111 23454443 4445567778665554 4321100 000 01122344555445667
Q ss_pred EecCCC-cHHHHHHHhhcCCeeEEeec-CCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 161 IGLSEA-SADTIRRAHAVHPITAVQME-YSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 161 iGvsn~-~~~~l~~~~~~~~~~~~q~~-~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
+++.+. +++..+++++....+.+.+- --+.++ .=+...+++.|+ -+.+.+
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP---~~~~~~~~~~~~~~~~~~~ 743 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCALARPHLADP---AWTLHEAAEIGYRDVAWPK 743 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc---cHHHHHHHHcCCCCCCCch
Confidence 777775 77889999988777777762 333333 235666777776 455544
No 143
>PRK02227 hypothetical protein; Provisional
Probab=48.88 E-value=1.6e+02 Score=24.53 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcC-cCC-CChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDV-YGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~-Yg~-~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
+.+|+ ..|++.|..+||.=+. -|. +......+.+... .-+...-||..++-.+ ..+..+..++.
T Consensus 9 ~~eEA----~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~-~~~~~~pvSAtiGD~p---------~~p~~~~~aa~ 74 (238)
T PRK02227 9 NLEEA----LEALAGGADIIDVKNPKEGSLGANFPWVIREIVA-AVPGRKPVSATIGDVP---------YKPGTISLAAL 74 (238)
T ss_pred CHHHH----HHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHH-HhCCCCCceeeccCCC---------CCchHHHHHHH
Confidence 44555 5678999999997432 221 1345556655444 3334457777777443 34545544443
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHH----HHHHHHHHHcCcccEEecCCC------cHHHHHHHhhcCCeeEEeec-
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDT----MGELKKLVEEGKIKYIGLSEA------SADTIRRAHAVHPITAVQME- 186 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~----~~~l~~l~~~G~ir~iGvsn~------~~~~l~~~~~~~~~~~~q~~- 186 (234)
. ....|.|||-+=+.-..+.. ...+. +++...+.....+-.++.+.+ ++..+-.+.....++.+++.
T Consensus 75 ~-~a~~GvDyVKvGl~~~~~~~-~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT 152 (238)
T PRK02227 75 G-AAATGADYVKVGLYGGKTAE-EAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT 152 (238)
T ss_pred H-HHhhCCCEEEEcCCCCCcHH-HHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec
Confidence 3 34567888766544222111 11122 233333344667778888886 45556665555677777773
Q ss_pred -----CCCCCC---CchhcHHHHHHHCCe
Q 026727 187 -----YSLWTR---EIEDDIIPLCRFLHI 207 (234)
Q Consensus 187 -----~n~~~~---~~~~~l~~~~~~~gi 207 (234)
-++++. ....++++.|+++|+
T Consensus 153 a~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl 181 (238)
T PRK02227 153 AIKDGKSLFDHMDEEELAEFVAEARSHGL 181 (238)
T ss_pred ccCCCcchHhhCCHHHHHHHHHHHHHccc
Confidence 233332 223788999999999
No 144
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=48.75 E-value=2.2e+02 Score=26.22 Aligned_cols=47 Identities=6% Similarity=0.121 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (234)
.+++.+.+.++...++.|+.+ +.+...+...+.+.+.+.++++++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcC
Confidence 478899999999888888654 33433332233444556666667666
No 145
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.49 E-value=78 Score=26.68 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCC--------CCCCHHHHHHHHHHHHHcC---cccE-------EecCCC--
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--------TSVSIEDTMGELKKLVEEG---KIKY-------IGLSEA-- 166 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~--------~~~~~~~~~~~l~~l~~~G---~ir~-------iGvsn~-- 166 (234)
++.+...+ +-..|.++|+++|++-. |. ...+ -++.++.+.+.. ++.. +|++.+
T Consensus 18 ~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~---~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~ 90 (275)
T cd07937 18 MRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFLNED---PWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPD 90 (275)
T ss_pred ccHHHHHH-HHHHHHHcCCCEEEccC---CcchhhhccccCCC---HHHHHHHHHHhCCCCceehhcccccccCccCCCc
Confidence 44444444 57889999999988863 22 1122 244444444322 2222 222222
Q ss_pred --cHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEE
Q 026727 167 --SADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 167 --~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
....++.+.+ ..++.+.+-...-+-+.-.+.+++++++|+ +..
T Consensus 91 ~~~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 91 DVVELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 2333444443 344555553333222223678889999998 654
No 146
>PTZ00081 enolase; Provisional
Probab=48.44 E-value=2.2e+02 Score=26.01 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC--cccEEec--CCCcHHHHHHHhhcCCeeE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGL--SEASADTIRRAHAVHPITA 182 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--sn~~~~~l~~~~~~~~~~~ 182 (234)
.+++.+.+-+.+.++.+ +++++..|-...+ |+.+.+|.++= .+.-+|= +..++..+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~~D----~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQDD----WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCccc----HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 56777777666777665 4677877754333 55555555442 4544443 2356899999998878888
Q ss_pred EeecCCCCCCC-chhcHHHHHHHCCe-EEE
Q 026727 183 VQMEYSLWTRE-IEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a 210 (234)
+|+..|-.-.= ...+++..|+++|+ ++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 88887765532 12789999999999 554
No 147
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=48.42 E-value=1.7e+02 Score=24.97 Aligned_cols=81 Identities=7% Similarity=-0.083 Sum_probs=51.0
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC-chhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~ 205 (234)
.++.++..|-+. . +.+.++.++-.+. +.|=|-++...+.++++....+++|+...-.-.- ...++.+.|+.+
T Consensus 183 ~~i~~iEqP~~~---~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPD---A---DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCC---H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 355556555321 1 4555555553332 4444557788888888776678888866654321 127899999999
Q ss_pred Ce-EEEeecc
Q 026727 206 HI-FLPYNPS 214 (234)
Q Consensus 206 gi-v~a~spl 214 (234)
|+ ++..+.+
T Consensus 257 gi~~~~~~~~ 266 (307)
T TIGR01927 257 GLQAVFSSVF 266 (307)
T ss_pred CCCEEEECcc
Confidence 99 8876655
No 148
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.30 E-value=1.9e+02 Score=25.26 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTS 62 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA 62 (234)
.+.++..+++...-++|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 477889999999999999999984
No 149
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=47.58 E-value=88 Score=28.19 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~ 166 (234)
+.+++.+.+.+++..+ +=+|.+.+|.-- ..+.++.++++|++ .|+.+-
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R~--~giVSR 186 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGRI--MGIVSR 186 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCCc--cCeecC
Confidence 4678888888887765 458889999752 36778888888865 565543
No 150
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=47.44 E-value=74 Score=28.03 Aligned_cols=84 Identities=8% Similarity=0.121 Sum_probs=51.5
Q ss_pred EEEecCCCC-----------CCHHHHHHHHHHHHH-cC---cccEEecC--CCcHHHHHHH---hhcCCeeEEeecCCCC
Q 026727 131 YYQHRVDTS-----------VSIEDTMGELKKLVE-EG---KIKYIGLS--EASADTIRRA---HAVHPITAVQMEYSLW 190 (234)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G---~ir~iGvs--n~~~~~l~~~---~~~~~~~~~q~~~n~~ 190 (234)
+-||.++++ .+++++++++.++.+ .| .|+++=+. |-+.+++.++ +...++.++-++||.+
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668887632 246788888887654 34 23344333 3334554444 4445577888999987
Q ss_pred CCC----ch----hcHHHHHHHCCe-EEEeecc
Q 026727 191 TRE----IE----DDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 191 ~~~----~~----~~l~~~~~~~gi-v~a~spl 214 (234)
... +. ..+.++.+++|+ ++.....
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~ 331 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSR 331 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 531 11 356777888999 8876665
No 151
>TIGR00035 asp_race aspartate racemase.
Probab=47.00 E-value=1.6e+02 Score=23.97 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC------------CCHHHHHHHHHHHHHcCcccEEecCCCcHHH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------------VSIEDTMGELKKLVEEGKIKYIGLSEASADT 170 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~ 170 (234)
.+.+.+++-++..-.+.+.++++.+.+++|+.. .....+.+.++.|.+.| +..|-++-.++..
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 456777777777778899999999999998431 12234566666666655 6778776655443
No 152
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=46.64 E-value=42 Score=26.92 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcC-CeeEEeecCCCCCCC
Q 026727 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQMEYSLWTRE 193 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~-~~~~~q~~~n~~~~~ 193 (234)
+-+.|-.-|+..+.+ -+-.+ +.++.++.++++--=-.||+.+ .+.++++++++.. .|.+ ++..
T Consensus 25 ~~~al~~gGi~~iEi---T~~t~-----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv-----SP~~-- 89 (196)
T PF01081_consen 25 IAEALIEGGIRAIEI---TLRTP-----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV-----SPGF-- 89 (196)
T ss_dssp HHHHHHHTT--EEEE---ETTST-----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE-----ESS---
T ss_pred HHHHHHHCCCCEEEE---ecCCc-----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE-----CCCC--
Confidence 444555566554443 22211 2344444444432224589988 6889999988763 4433 2222
Q ss_pred chhcHHHHHHHCCe-EEE
Q 026727 194 IEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 194 ~~~~l~~~~~~~gi-v~a 210 (234)
.++++++|+++|+ ++.
T Consensus 90 -~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 90 -DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --HHHHHHHHHHTSEEEE
T ss_pred -CHHHHHHHHHcCCcccC
Confidence 3789999999999 774
No 153
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=46.44 E-value=2e+02 Score=25.03 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 146 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 146 ~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
++.+.++++.-.|. +.|=|-++...+.++++....+++|+..+.+-. -.++++.|+++|| ++..|.+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~ 241 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSAL 241 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCc
Confidence 45555665553333 334444677778888877788888887766553 2578889999999 8776655
No 154
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.42 E-value=1.3e+02 Score=26.21 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=55.7
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCcc-cEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFL 205 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 205 (234)
.++.++..|-.. +-+..+.++++.-.+ -+.|=|-++...+..+++....+++|+..+-.-. ....++..+|+.+
T Consensus 203 ~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~ 278 (354)
T cd03317 203 YGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEH 278 (354)
T ss_pred CCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHc
Confidence 466677765432 235666777655433 3556666888999999887778899987655442 1127899999999
Q ss_pred Ce-EEEeec
Q 026727 206 HI-FLPYNP 213 (234)
Q Consensus 206 gi-v~a~sp 213 (234)
|+ ++..+.
T Consensus 279 gi~~~~g~~ 287 (354)
T cd03317 279 GIPVWCGGM 287 (354)
T ss_pred CCcEEecCc
Confidence 99 876544
No 155
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=46.37 E-value=2e+02 Score=24.99 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCC----------cCcCCCC--hhHHHHHHHHhc---CCCCceEEEeeeccccCCCCCcC
Q 026727 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVDH--DNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVSIG 104 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~~g--~sE~~lg~al~~---~~R~~~~i~tK~~~~~~~~~~~~ 104 (234)
+++...+.-..+.+.|+..||-- ..+|. . ++-+.+.+.++. ... ++-|+.|....+.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga-~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d------ 148 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGA-ALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWD------ 148 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcch-hhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccC------
Confidence 56778888888999999999942 12221 0 345556666654 112 6888999865441
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCH--HHHHHHHHHHHHcCc-ccEEecCC-CcHHHHHHHhhcCCe
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGK-IKYIGLSE-ASADTIRRAHAVHPI 180 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~-ir~iGvsn-~~~~~l~~~~~~~~~ 180 (234)
+.+.....+.+.++.-| +|.+.+|.-...... ..-|+.+.++++.=. |.-||=.+ ++.+...+.++....
T Consensus 149 ---~~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~ 222 (323)
T COG0042 149 ---DDDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGA 222 (323)
T ss_pred ---cccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCC
Confidence 12234445666777777 677999976432211 135888888887765 66666555 688888888887666
Q ss_pred eEEee
Q 026727 181 TAVQM 185 (234)
Q Consensus 181 ~~~q~ 185 (234)
+-+++
T Consensus 223 DgVMi 227 (323)
T COG0042 223 DGVMI 227 (323)
T ss_pred CEEEE
Confidence 66666
No 156
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.34 E-value=1.1e+02 Score=25.55 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCcHHHHHHHhhcCCeeEEee
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (234)
++.+...+ +-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.+....+.+.++.+.+. .++.+.+
T Consensus 19 ~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~i 90 (262)
T cd07948 19 FDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVDL 90 (262)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEEE
Confidence 44555444 55559999988888763 5433 233455555554443 33455566778888888875 2233333
Q ss_pred cCC---------CCCCCc-----hhcHHHHHHHCCe-EEEe
Q 026727 186 EYS---------LWTREI-----EDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 186 ~~n---------~~~~~~-----~~~l~~~~~~~gi-v~a~ 211 (234)
.+. .-.... -.+.+++++++|+ +...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 221 111110 1567799999999 5544
No 157
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=46.19 E-value=22 Score=28.37 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=39.6
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecCC
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n 188 (234)
.+..+|.||+=+.+ .|.....+ ..+.+.++.+.-..+.+||. |.+.+.+.++++..+++++|+.-+
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~ 80 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGD 80 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SG
T ss_pred HHHHcCCCEEeeec--CCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCC
Confidence 45678888887753 34322222 23344444444444478886 567788888888899999997433
No 158
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=45.77 E-value=1.4e+02 Score=26.83 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHHHHHHhhc----CCeeEEeecCCCCCCCch--hcHHHHHHHCCe-EEEee
Q 026727 168 ADTIRRAHAV----HPITAVQMEYSLWTREIE--DDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 168 ~~~l~~~~~~----~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi-v~a~s 212 (234)
.+.++++++. .-+..+|.+-.+.-...+ ..+.+.|.++|+ +|.=.
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DE 225 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDE 225 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEec
Confidence 4556666554 113446666666555444 789999999999 76543
No 159
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=45.35 E-value=2.4e+02 Score=25.64 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=49.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCC---cHHHHHHHhhc-CCeeEEee-cCCCCCCCchhcHHHHH
Q 026727 129 DLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEA---SADTIRRAHAV-HPITAVQM-EYSLWTREIEDDIIPLC 202 (234)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~---~~~~l~~~~~~-~~~~~~q~-~~n~~~~~~~~~l~~~~ 202 (234)
.++.+|.--+ -+....+.++++| .|+++.|.+- +.+.++++++. .....+.. ...+..-.+-+++...|
T Consensus 133 ~iitl~~eH~-----~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~ic 207 (428)
T KOG1549|consen 133 HIITLQTEHP-----CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKIC 207 (428)
T ss_pred eEEEecccCc-----chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHh
Confidence 4666664322 2355556678888 5678888763 45556666654 22222222 12222223348999999
Q ss_pred HHCCe-EEEeecccCCc
Q 026727 203 RFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 203 ~~~gi-v~a~spl~~G~ 218 (234)
++.|| +++=..=+-|+
T Consensus 208 r~~~v~v~~DaAQavG~ 224 (428)
T KOG1549|consen 208 REEGVQVHVDAAQAVGK 224 (428)
T ss_pred CcCCcEEEeehhhhcCC
Confidence 99999 88665555555
No 160
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.30 E-value=93 Score=25.26 Aligned_cols=59 Identities=27% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCccc---EEecCC-CcHHHHHHHhhc-CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEE
Q 026727 144 DTMGELKKLVEEGKIK---YIGLSE-ASADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 144 ~~~~~l~~l~~~G~ir---~iGvsn-~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
..++.+++++++-.-+ .||+.+ .+.++++++++. ..|.+ ++... ++++++|+++|+ ++.
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-----sP~~~---~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-----SPSFN---RETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-----CCCCC---HHHHHHHHHcCCCEEC
No 161
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=45.13 E-value=2.4e+02 Score=25.64 Aligned_cols=83 Identities=7% Similarity=0.068 Sum_probs=54.4
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-
Q 026727 130 LYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI- 207 (234)
Q Consensus 130 l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi- 207 (234)
+.++..|-+..+..+-++.+.+|++.-.|. ..|=+-++...+.++++..-++++|......--....++.+.|+.+|+
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 446766644322112267777787665554 345556788889988887778888887532211112789999999999
Q ss_pred EEEee
Q 026727 208 FLPYN 212 (234)
Q Consensus 208 v~a~s 212 (234)
+..++
T Consensus 332 v~~h~ 336 (441)
T TIGR03247 332 WGSHS 336 (441)
T ss_pred EEEeC
Confidence 88875
No 162
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=44.78 E-value=81 Score=28.18 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCc--cc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHCCe-EEEe
Q 026727 145 TMGELKKLVEEGK--IK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 145 ~~~~l~~l~~~G~--ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi-v~a~ 211 (234)
-++.+.+|++.-. |. .-|=+.++....+++++..-.+++|....-.-. ....++...|+.+|+ +...
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 3666777776643 22 236677888889999888788999987665431 112789999999999 8765
No 163
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=44.67 E-value=96 Score=28.17 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEec-CC----------CCC-CHHH---HH-HHHHHHHHcCcccEEecCCCcH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR-VD----------TSV-SIED---TM-GELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
.+.+.+.+.++..+ .++.+++.+|.+-. |. ... +.++ .+ .+.+.|.+.|..+ +++|+|..
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~far 290 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFAL 290 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 46777777777665 47888888876531 10 001 1111 22 3445566677654 88888764
No 164
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.48 E-value=2.1e+02 Score=24.87 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCC---C----ChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGV---D----HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~---~----g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 112 (234)
+.++..+.+..+.+.|++.|=.--.... + -..+...=+++++.-.+++.|..=... .++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHH-
Confidence 3455666677778899998765322110 0 011222233454422223333322211 133332
Q ss_pred HHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCC
Q 026727 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (234)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~ 191 (234)
..+.++.|. ..++.++..|-... -++.+.+|.++.-+. +.|=|-++...+..+++..-++++|......-
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 333334443 34666777664332 377788888776555 44555678889888887777889998755443
Q ss_pred C-CchhcHHHHHHHCCe-EEEee
Q 026727 192 R-EIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 192 ~-~~~~~l~~~~~~~gi-v~a~s 212 (234)
. ....++.+.|+++|+ ++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 1 112789999999999 88665
No 165
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=44.43 E-value=2e+02 Score=24.42 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCC-ceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
.+...+.++.-.+.+..|+..+..=+. +..+..+.-+-. ..++ .+-+...+.... .+...+...+...
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~-~~~~~t~~~~~~-l~~~~g~~~i~Hltcr~---------~~~~~l~~~L~~~ 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGG-TTAELTLTIASR-AQNVVGVETCMHLTCTN---------MPIEMIDDALERA 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCC-cchhhHHHHHHH-HHHhcCCCeeEEeccCC---------CCHHHHHHHHHHH
Confidence 344556666667888999998754432 223333322221 2222 333333333222 3455555555554
Q ss_pred HHHcCCCccCeEEEecCCC---------CCCHHHHHHHHHHHHHc-CcccEEecCCCc--------HH-HHHHHhhc---
Q 026727 120 LKRLDVDYIDLYYQHRVDT---------SVSIEDTMGELKKLVEE-GKIKYIGLSEAS--------AD-TIRRAHAV--- 177 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~-G~ir~iGvsn~~--------~~-~l~~~~~~--- 177 (234)
..+|++ +++.|-...+ ...+..+.+.++.+++. |..-.||+..+. .+ ++..+.++
T Consensus 84 -~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~a 160 (281)
T TIGR00677 84 -YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDA 160 (281)
T ss_pred -HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHc
Confidence 777755 3444533211 11233355555555554 443578988663 22 23333332
Q ss_pred -CCeeEEeecCCCCCCCchhcHHHHHHHCCe
Q 026727 178 -HPITAVQMEYSLWTREIEDDIIPLCRFLHI 207 (234)
Q Consensus 178 -~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 207 (234)
..+.+-|.-|+. +.-.+.++.|++.|+
T Consensus 161 GA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi 188 (281)
T TIGR00677 161 GADFIITQLFYDV---DNFLKFVNDCRAIGI 188 (281)
T ss_pred CCCEeeccceecH---HHHHHHHHHHHHcCC
Confidence 346777775555 223688999999976
No 166
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=44.25 E-value=2.4e+02 Score=25.44 Aligned_cols=96 Identities=8% Similarity=0.020 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC--cccEEecCC--CcHHHHHHHhhcCCeeE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE--ASADTIRRAHAVHPITA 182 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvsn--~~~~~l~~~~~~~~~~~ 182 (234)
++++...+-+++.++. .++.++..|-+..+ |+.+.+|.+.- .+.-.|=-+ .++..++++++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~D----~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEED----WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCccc----HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 3444544444444443 35777887754333 55666665553 454333222 25889999988877888
Q ss_pred EeecCCCCCCC-chhcHHHHHHHCCe-EEEe
Q 026727 183 VQMEYSLWTRE-IEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~ 211 (234)
+|+..|-.-.= ...++.+.|+++|+ ++..
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~ 363 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVIS 363 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEEe
Confidence 88877765431 12789999999999 7753
No 167
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=44.14 E-value=1.2e+02 Score=22.03 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=42.3
Q ss_pred CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC--CccCeEEEecCCCC-CCHHHHHHHHHHHHHc
Q 026727 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (234)
Q Consensus 82 ~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 155 (234)
.+|=.+.|+-|++... ..+..+++.+.++++.... .-.|++++..+... .+..++.+.|..|.+.
T Consensus 43 ~~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 43 HPRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred CceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3455577777754322 3477888888888875542 34699999987543 4566666666666543
No 168
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=43.88 E-value=1.7e+02 Score=23.66 Aligned_cols=135 Identities=12% Similarity=0.135 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 38 PLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
..+.++..++++.|.+.|+.-+-..+.|- +...+.|+ ..++.|+|=++..... .+.+.-...++
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~ 77 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETK 77 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHH
Confidence 34789999999999999999888766554 33344454 3468888877754421 23444444455
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc--CcccEE--ecCCCcHHHHHHHhhc---CCeeEEeec--CC
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYI--GLSEASADTIRRAHAV---HPITAVQME--YS 188 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~i--Gvsn~~~~~l~~~~~~---~~~~~~q~~--~n 188 (234)
+.+ ++|.|-||+++--..-.+.+.....+.+.+.++. |..-.+ -.+-.+.+++.++.+. ...+++... |.
T Consensus 78 ~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 78 EAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred HHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 544 4799999998765433344566677777777764 432222 2222344555555443 466777776 65
Q ss_pred C
Q 026727 189 L 189 (234)
Q Consensus 189 ~ 189 (234)
.
T Consensus 157 ~ 157 (211)
T TIGR00126 157 A 157 (211)
T ss_pred C
Confidence 4
No 169
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.83 E-value=2.4e+02 Score=25.16 Aligned_cols=84 Identities=10% Similarity=0.053 Sum_probs=55.0
Q ss_pred EEEecCCCC-----------CCHHHHHHHHHHHHHcCccc----EEecC--CCcHHHHHHH---hhcC------CeeEEe
Q 026727 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGKIK----YIGLS--EASADTIRRA---HAVH------PITAVQ 184 (234)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir----~iGvs--n~~~~~l~~~---~~~~------~~~~~q 184 (234)
+-||.|+++ .+++++++++.+..++..=| |+=+. |-+.++.+++ ++.. +..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 678988542 46788999998886543211 22222 4455555544 4434 568999
Q ss_pred ecCCCCCCC------c--hhcHHHHHHHCCe-EEEeecc
Q 026727 185 MEYSLWTRE------I--EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 185 ~~~n~~~~~------~--~~~l~~~~~~~gi-v~a~spl 214 (234)
++||+.... . -..+.+.++++|| +......
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~ 350 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVER 350 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCC
Confidence 999997531 1 1577888899999 8877766
No 170
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=43.82 E-value=2.2e+02 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
+.++..++.+...+.|+.+|+...
T Consensus 21 s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 21 TVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 678888999998899999999754
No 171
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=43.52 E-value=1.9e+02 Score=24.11 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEe
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q 184 (234)
..+.+.-.+-.+-..+.++++.|-+=.+..+... .++.+++++.++|+++|.+- +-+++-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeC
Confidence 3667777777777888889998888777766543 35779999999999999874 55777777777776665 344443
Q ss_pred ecCCCCCCC--c-hhcHHHHHHH-CCe-EEEeecc
Q 026727 185 MEYSLWTRE--I-EDDIIPLCRF-LHI-FLPYNPS 214 (234)
Q Consensus 185 ~~~n~~~~~--~-~~~l~~~~~~-~gi-v~a~spl 214 (234)
.--.+.... . ..++++..++ .++ |++-+-.
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI 184 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGI 184 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCC
Confidence 211222211 1 1566666666 478 7765433
No 172
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=43.46 E-value=80 Score=28.39 Aligned_cols=48 Identities=8% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
.++..+|-..++.|+=..-....+..++-+.++++++.=.+|.+-|-|
T Consensus 176 Ati~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvIN 223 (475)
T KOG0258|consen 176 ATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVIN 223 (475)
T ss_pred HHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEEC
Confidence 344455555555555554455556666666666666554666665544
No 173
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=43.36 E-value=1.7e+02 Score=23.40 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCC----------cCcCCC-ChhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVD-HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKG 107 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg~~-g~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 107 (234)
+.++..+..+.+.++|+..||-- +.||.. ...-+.+-+.++... .-.+-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 56777888888899999999842 345520 013334444444311 111456777643221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCC--CHHHHHHHHHHHHHcCcccEEecCCC-cHHHHHHHhhcCCeeEEe
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV--SIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q 184 (234)
.+... .+-+.|+..|. |.+.+|...... .-...|+.+.++++.-.+.-++.... +.+.+.++++....+.++
T Consensus 137 -~~~~~-~~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 -EEETL-ELAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred -chHHH-HHHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 11222 23334555664 556677653211 11124677777777767777777664 678888888766677777
Q ss_pred ecCCC
Q 026727 185 MEYSL 189 (234)
Q Consensus 185 ~~~n~ 189 (234)
+--.+
T Consensus 212 igr~~ 216 (231)
T cd02801 212 IGRGA 216 (231)
T ss_pred EcHHh
Confidence 74433
No 174
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.31 E-value=98 Score=23.97 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEee-eccccCCCCCcCCCCCHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATK-FGCFMLDGVSIGVKGSPEYVRKCCEA 118 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (234)
+++..+-.+.+|-+.||.+|=.|..+|. +-..+-+.+. .. =++++.|. .+... -+...+.+.+++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~---tA~k~lemve-g~-lkvVvVthh~Gf~e---------~g~~e~~~E~~~ 77 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY---TALKALEMVE-GD-LKVVVVTHHAGFEE---------KGTQEMDEEVRK 77 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH---HHHHHHHhcc-cC-ceEEEEEeeccccc---------CCceecCHHHHH
Confidence 4555666778888999999999999994 3222222222 11 23555554 33332 224456677888
Q ss_pred HHHHcCCC
Q 026727 119 SLKRLDVD 126 (234)
Q Consensus 119 sL~~Lg~d 126 (234)
.|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 88888853
No 175
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.27 E-value=66 Score=29.37 Aligned_cols=157 Identities=16% Similarity=0.134 Sum_probs=87.6
Q ss_pred CCCCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEe--CC--cCcC-C----CChhHHHHH
Q 026727 6 QVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFD--TS--DVYG-V----DHDNEIMVG 76 (234)
Q Consensus 6 ~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~D--tA--~~Yg-~----~g~sE~~lg 76 (234)
|+..|.-.+ +|-..-|++-+-...+-..|.+- + -+...-+.|+..+- || ..|- . .|.-|+++.
T Consensus 84 qSGkPVgvF-kTh~~APrVlIaNsnlVp~wanw---e----~f~el~~~Gl~myGQMTAGsWiYIGtQGIvqGTyeT~~~ 155 (561)
T COG2987 84 QSGKPVGVF-KTHKDAPRVLIANSNLVPHWANW---E----HFNELDAKGLTMYGQMTAGSWIYIGTQGIVQGTYETFAE 155 (561)
T ss_pred ecCCceeEe-ecCCCCCeEEEecCccccccccH---H----HHHHHHhhhhhheecccccceEEEcccceeechHHHHHH
Confidence 444454445 55566677666555543334322 1 22222334444222 21 1221 1 145666665
Q ss_pred HHHhc---CCCCceEEEeeeccccCCCCCcCCCCCHH--HHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHH
Q 026727 77 KALKQ---LPRDKIQLATKFGCFMLDGVSIGVKGSPE--YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKK 151 (234)
Q Consensus 77 ~al~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~--~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~ 151 (234)
-+-+. ..+.++++++-++......+-...-...- .++-.-.+.-.||.+.|+|.. -.+++|++...++
T Consensus 156 ~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~-------a~~ldeAl~~a~~ 228 (561)
T COG2987 156 AGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI-------AETLDEALALAEE 228 (561)
T ss_pred HHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-------cCCHHHHHHHHHH
Confidence 44443 45778999998876543211000000000 000112233367888998862 2467899999999
Q ss_pred HHHcCcccEEecCCCcHHHHHHHhhc
Q 026727 152 LVEEGKIKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 152 l~~~G~ir~iGvsn~~~~~l~~~~~~ 177 (234)
..++|+-.+||+-..-++.+.++++.
T Consensus 229 ~~~ag~p~SIgl~GNaaei~~~l~~r 254 (561)
T COG2987 229 ATAAGEPISIGLLGNAAEILPELLRR 254 (561)
T ss_pred HHhcCCceEEEEeccHHHHHHHHHHc
Confidence 99999999999999888888888876
No 176
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=43.24 E-value=1.3e+02 Score=21.97 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC---CccCeEEEecCCCC-CCHHHHHHHHHHHHHc
Q 026727 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV---DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (234)
Q Consensus 82 ~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 155 (234)
.+|=.+.|+-|++... ..+..+++.+.+.++.+.. ...|++++-.+... .+..++.+.|..|.+.
T Consensus 46 ~~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 46 PTRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred CcEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3444567777755322 3478888888888877642 35799999887654 4677888888777654
No 177
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.94 E-value=27 Score=29.05 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc-CcccEEecCCC-------cHHHHHHHhhcCCeeEEe
Q 026727 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKIKYIGLSEA-------SADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvsn~-------~~~~l~~~~~~~~~~~~q 184 (234)
...+++.|+-.| +|||++=+-|-......+++++..-++.++ |.--+.|=.-+ ..++..+.++...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 456788888888 899999999875544434445444444443 33333332211 122222233335666666
Q ss_pred ecCCCCCCCch--hcHHHHHHHCCe-EEE
Q 026727 185 MEYSLWTREIE--DDIIPLCRFLHI-FLP 210 (234)
Q Consensus 185 ~~~n~~~~~~~--~~l~~~~~~~gi-v~a 210 (234)
+.=....-+.+ ..+++.+++.|. |++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 65444443322 577777777777 654
No 178
>PRK15108 biotin synthase; Provisional
Probab=42.70 E-value=2.3e+02 Score=24.75 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCc-CCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVY-GVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
.+.+++.+....+.+.|++.|-..... ++....-+.+.+.++..+...+.++.-.+. .+.+ .-
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e-----~l 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSES-----QA 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHH-----HH
Confidence 477888888888889999988543221 210112345555655433223333322221 2222 33
Q ss_pred HHHHHcCCCccCeEEEecC------CCCCCHHHHHHHHHHHHHcCccc
Q 026727 118 ASLKRLDVDYIDLYYQHRV------DTSVSIEDTMGELKKLVEEGKIK 159 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir 159 (234)
+-|+..|+|++.+-+=-.| -.....++.++.++.+++.|.--
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 3355667664322110111 11235678899999999999643
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.57 E-value=1.2e+02 Score=21.51 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=5.1
Q ss_pred CcccEEecCC
Q 026727 156 GKIKYIGLSE 165 (234)
Q Consensus 156 G~ir~iGvsn 165 (234)
.....||+|.
T Consensus 49 ~~pdvV~iS~ 58 (119)
T cd02067 49 EDADAIGLSG 58 (119)
T ss_pred cCCCEEEEec
Confidence 3445555554
No 180
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=42.55 E-value=2e+02 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
+.++..++++.-.++||..|++..
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~ 41 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGI 41 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec
Confidence 678889999999999999999863
No 181
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=42.53 E-value=40 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGV 67 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~ 67 (234)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 6778889999999999999999999963
No 182
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=42.50 E-value=1.2e+02 Score=27.39 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHcCCCccCeEEEecCCC-CCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc--------CCeeEEeecCCCC
Q 026727 120 LKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--------HPITAVQMEYSLW 190 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~--------~~~~~~q~~~n~~ 190 (234)
.+.||++|. ++..|-. ...-.+... .+=+.|-...+|..+.+++++++.++. .|+-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss~eLVa---Avs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIASAELVV---AMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCCHHHHH---HHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777654 3333322 112223333 345789999999999999888766542 25655554 3332
Q ss_pred CCCchhcHHHHHHHCCe-EEEeec
Q 026727 191 TREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 191 ~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
+...+.+.++.+.++|| ++..+-
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 32224678999999999 776654
No 183
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=42.21 E-value=1.6e+02 Score=22.80 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=52.9
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc--CCeeEEeecCCCCCCC-----chhcHHHHHHH
Q 026727 132 YQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTRE-----IEDDIIPLCRF 204 (234)
Q Consensus 132 ~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-----~~~~l~~~~~~ 204 (234)
++..|.. ...+++++..-+=-++.-|++|=|.+-+-....++++. ..+.++-+.|+.-... .+.++-+..++
T Consensus 3 yf~~pG~-eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 3 YFEKPGK-ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred cccCCcc-cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4444433 23456666555555677788888876555544444443 2233444444444321 23789999999
Q ss_pred CCe-EEEeecccCCccc
Q 026727 205 LHI-FLPYNPSFCLQEA 220 (234)
Q Consensus 205 ~gi-v~a~spl~~G~~~ 220 (234)
+|. ++.-|-.++|-..
T Consensus 82 rGa~v~~~sHalSg~eR 98 (186)
T COG1751 82 RGAKVLTQSHALSGVER 98 (186)
T ss_pred cCceeeeehhhhhcchh
Confidence 999 8888777666533
No 184
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.09 E-value=2.3e+02 Score=24.63 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=50.6
Q ss_pred EEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCc
Q 026727 88 QLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (234)
Q Consensus 88 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 167 (234)
+|..|+.......+ .....+.+... .+-+.|+..|+|+|++- |.......-.-.++...++++.=.|--+++.+++
T Consensus 220 ~v~vRis~~~~~~~-~~~~~~~ee~~-~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFND-MGDSDPEATFS-YLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCC-CCCCCCHHHHH-HHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCC
Confidence 58888875432110 01123444433 35556677776666651 2211111111134444445554456778888877
Q ss_pred HHHHHHHhhcCCeeEEee
Q 026727 168 ADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~ 185 (234)
++..+++++....+.+.+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 888888888776776665
No 185
>PLN02540 methylenetetrahydrofolate reductase
Probab=42.06 E-value=3.1e+02 Score=25.98 Aligned_cols=149 Identities=11% Similarity=0.104 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCC-ceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHH
Q 026727 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 120 (234)
+...+.+++-.+.|-.|+|.+..-|. ..++..+.-+-. ..++ .+-..-.+.... .+...+...+.+.
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgG-st~~~Tl~la~~-lq~~~Gie~i~HLTCrd---------~n~~~L~~~L~~a- 82 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGG-STADLTLDIANR-MQNMICVETMMHLTCTN---------MPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCC-CcHHHHHHHHHH-HHHhcCCCeeEEeeecC---------CCHHHHHHHHHHH-
Confidence 44555566666889999998755552 234444433322 2222 233333333222 4566777766666
Q ss_pred HHcCCCccCeEEEecCCCC---------CCHHHHHHHHHHHHHc-CcccEEecCCCcH------------------HHHH
Q 026727 121 KRLDVDYIDLYYQHRVDTS---------VSIEDTMGELKKLVEE-GKIKYIGLSEASA------------------DTIR 172 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~---------~~~~~~~~~l~~l~~~-G~ir~iGvsn~~~------------------~~l~ 172 (234)
..+|+. .++.|....+. ..+..+.+-++.+++. |-.-.|||+.+.. ..+.
T Consensus 83 ~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 788876 44555432111 1123344444445544 4456788885421 2344
Q ss_pred HHhhc----CCeeEEeecCCCCCCCchhcHHHHHHHCCe
Q 026727 173 RAHAV----HPITAVQMEYSLWTREIEDDIIPLCRFLHI 207 (234)
Q Consensus 173 ~~~~~----~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 207 (234)
.+.++ ..+.+-|+-|+. +.-.+.++.|++.||
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi 196 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGI 196 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCC
Confidence 33332 347777875554 323688999999984
No 186
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.00 E-value=2.9e+02 Score=25.62 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=57.3
Q ss_pred hHHHHHHHHhc----CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHH-HH
Q 026727 71 NEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-DT 145 (234)
Q Consensus 71 sE~~lg~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~ 145 (234)
+++.+-+++++ .+.+-++|.+-.. ++-|-..++...+.++.+.++++.++.|....... ..
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 46777777765 2233344554432 44454555555666665568899999886654322 22
Q ss_pred HHHHHHHH--------------HcCcccEEecCCC------cHHHHHHHhhcCCeeEEee
Q 026727 146 MGELKKLV--------------EEGKIKYIGLSEA------SADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 146 ~~~l~~l~--------------~~G~ir~iGvsn~------~~~~l~~~~~~~~~~~~q~ 185 (234)
-.+++.++ +.+.|--||.++. +...++++++...+.++.+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 23333332 2356778888762 4466777777655555443
No 187
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=41.17 E-value=2.8e+02 Score=25.25 Aligned_cols=109 Identities=9% Similarity=-0.028 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCC-CCCHHHHHHHHHHHHHcCcccEEecCCCc---HHHHHHHhhcCCee
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEAS---ADTIRRAHAVHPIT 181 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvsn~~---~~~l~~~~~~~~~~ 181 (234)
.++++.+.+.+++....+. .++.+-+-.+.+ ....+.+++.+..++++..=..+.+++.. ++.++++.+. .++
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gvd 135 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GVG 135 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CCC
Confidence 4789999999888877663 456677776433 23335678888888887211257777643 5777777664 355
Q ss_pred EEeecCCCCCCCch---------------------------hcHHHHHHHCCe-EEEeecccCC
Q 026727 182 AVQMEYSLWTREIE---------------------------DDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 182 ~~q~~~n~~~~~~~---------------------------~~l~~~~~~~gi-v~a~spl~~G 217 (234)
.+.+.++..+.... .+-++.+.+.|+ +....++.-|
T Consensus 136 ~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 136 HVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred eEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 66666665543210 133566788999 8777787554
No 188
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=41.05 E-value=2.1e+02 Score=23.81 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEe-cCCCCCCHHHHHHHHHHHHHc-CcccEEecCCCcHHHHHHHhhcC---Cee
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTSVSIEDTMGELKKLVEE-GKIKYIGLSEASADTIRRAHAVH---PIT 181 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvsn~~~~~l~~~~~~~---~~~ 181 (234)
++.+...+ +-+.|.++|+++|++-+.- ++ .-|+.++.+.+. ..++..+++..+...++.+.+.. +++
T Consensus 17 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~-------~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 17 LTPEEKLE-IARQLDELGVDVIEAGFPAASP-------GDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEeCCCCCH-------HHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCC
Confidence 44555544 5555999999999985321 12 124555555553 34777777766677777776653 245
Q ss_pred EEeecCCCC--------CCC------chhcHHHHHHHCCe-EEEeecccCC
Q 026727 182 AVQMEYSLW--------TRE------IEDDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 182 ~~q~~~n~~--------~~~------~~~~l~~~~~~~gi-v~a~spl~~G 217 (234)
.+.+-+..- +.. .-.+.+++++++|+ +. +++--.+
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~ 138 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE-FSAEDAT 138 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE-EeeecCC
Confidence 444433221 111 11478889999999 65 4444333
No 189
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.04 E-value=1.8e+02 Score=24.18 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=51.8
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-CchhcHHHHHHHCC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRFLH 206 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 206 (234)
.++.++..|-+ .+-++.+.++. .+.--+.|=|-++...+.++++....+++|+...-.-. .....+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 45556665533 13355666665 33333555555677778888887778888887665432 11278999999999
Q ss_pred e-EEEeecc
Q 026727 207 I-FLPYNPS 214 (234)
Q Consensus 207 i-v~a~spl 214 (234)
+ ++..+-+
T Consensus 228 i~~~~~~~~ 236 (263)
T cd03320 228 IPAVVSSAL 236 (263)
T ss_pred CCEEEEcch
Confidence 9 7765433
No 190
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=41.03 E-value=1.1e+02 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.223 Sum_probs=23.3
Q ss_pred cCCCCCCCchhcHHHHHHHCCe-EEEe
Q 026727 186 EYSLWTREIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 186 ~~n~~~~~~~~~l~~~~~~~gi-v~a~ 211 (234)
+||+++.....++.+..++.|+ |+..
T Consensus 192 pY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 192 PYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 7999998877999999999999 8864
No 191
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=40.94 E-value=30 Score=29.62 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=14.0
Q ss_pred hcHHHHHHHCCe-EEE
Q 026727 196 DDIIPLCRFLHI-FLP 210 (234)
Q Consensus 196 ~~l~~~~~~~gi-v~a 210 (234)
.+++++|+++|| ||.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 899999999999 884
No 192
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=40.70 E-value=1.2e+02 Score=28.28 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHH------cCc-ccEEecCCCcHHHHHHHhhcC
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE------EGK-IKYIGLSEASADTIRRAHAVH 178 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~------~G~-ir~iGvsn~~~~~l~~~~~~~ 178 (234)
.++.+.- ..+-+.|.++|+++|++-+ |.......+..+.+.+... .++ .+-.+++....+.++.+++..
T Consensus 102 ~fs~eeK-i~Ia~~L~~~GVd~IEvG~---Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~ 177 (503)
T PLN03228 102 SLTPPQK-LEIARQLAKLRVDIMEVGF---PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEAL 177 (503)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEeC---CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhh
Confidence 3555443 4566679999998888744 4332222233444433221 111 233466666666677766541
Q ss_pred ---CeeEEee---------cCCCCCCCc-----hhcHHHHHHHCCe-EEEeecccCCc
Q 026727 179 ---PITAVQM---------EYSLWTREI-----EDDIIPLCRFLHI-FLPYNPSFCLQ 218 (234)
Q Consensus 179 ---~~~~~q~---------~~n~~~~~~-----~~~l~~~~~~~gi-v~a~spl~~G~ 218 (234)
+...+.+ ++++-.... -.+.+++++++|. .+.+++=..++
T Consensus 178 ~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~R 235 (503)
T PLN03228 178 KYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGR 235 (503)
T ss_pred cccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccc
Confidence 1112222 222211111 1578889999998 78877754554
No 193
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.68 E-value=1.7e+02 Score=25.98 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=54.9
Q ss_pred EEEecCCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEecCC--CcHHH---HHHHhhcC---CeeEEeecC
Q 026727 131 YYQHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLSE--ASADT---IRRAHAVH---PITAVQMEY 187 (234)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvsn--~~~~~---l~~~~~~~---~~~~~q~~~ 187 (234)
+-||.++++ .+++++++++.++. +.|. |+++=+.+ -+.++ +.+++... +..++-++|
T Consensus 242 vSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy 321 (373)
T PRK14459 242 VSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL 321 (373)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc
Confidence 567888542 45788899988776 4453 44554443 34444 44445444 568899999
Q ss_pred CCCCCC----c----hhcHHHHHHHCCe-EEEeecc
Q 026727 188 SLWTRE----I----EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 188 n~~~~~----~----~~~l~~~~~~~gi-v~a~spl 214 (234)
|+.... + -..+.+..+++|| +....+.
T Consensus 322 Np~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~ 357 (373)
T PRK14459 322 NPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTR 357 (373)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCC
Confidence 996531 1 1568888999999 8877666
No 194
>PRK09358 adenosine deaminase; Provisional
Probab=40.58 E-value=2.4e+02 Score=24.29 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-cHHHHHHHhhcCCeeEEeecC
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q~~~ 187 (234)
++...+.+++.++...-+.+--+=++.++...+.+...+.++.+++.|+--.+=++.. +++.+..+++...++. +..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~r--i~H 225 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAER--IGH 225 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcc--cch
Confidence 4455555666555422122211222333333455667778888888886655555533 2344555554222222 111
Q ss_pred CCCCCCchhcHHHHHHHCCeEEEeecc
Q 026727 188 SLWTREIEDDIIPLCRFLHIFLPYNPS 214 (234)
Q Consensus 188 n~~~~~~~~~l~~~~~~~giv~a~spl 214 (234)
...-.+ .+++++..+++||.+...|.
T Consensus 226 g~~l~~-~~~~~~~l~~~gi~v~~cP~ 251 (340)
T PRK09358 226 GVRAIE-DPALMARLADRRIPLEVCPT 251 (340)
T ss_pred hhhhcc-CHHHHHHHHHcCCeEEECCC
Confidence 111111 25689999999994444454
No 195
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=40.48 E-value=2.4e+02 Score=24.33 Aligned_cols=120 Identities=14% Similarity=-0.021 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHH------
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV------ 112 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i------ 112 (234)
.+.++..+.++.+.+.|++.|-......+ ......+-+.++..++...-+..+. +++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p-~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~ 137 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNP-DLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKK 137 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCC-CCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhcc
Confidence 47788888999999999987776433222 1122223333332111111111111 112211
Q ss_pred ----HHHHHHHHHHcCCCccCeEE---E-----ecC-CCCCCHHHHHHHHHHHHHcCcccE----EecCCCcHHHHHH
Q 026727 113 ----RKCCEASLKRLDVDYIDLYY---Q-----HRV-DTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRR 173 (234)
Q Consensus 113 ----~~~~~~sL~~Lg~d~iDl~~---l-----h~~-~~~~~~~~~~~~l~~l~~~G~ir~----iGvsn~~~~~l~~ 173 (234)
.+..-+.|+..|++.++..- + +.. ....+.++.+++++.+++.|.--. +|+ ..+.+++.+
T Consensus 138 ~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 138 EGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred CCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 14555667777888776320 1 111 112356788999999999984332 354 455444433
No 196
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.12 E-value=2.7e+02 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
+.++..+++..-.++||..|+...
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~ 47 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGF 47 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeC
Confidence 678888999998999999999863
No 197
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=39.97 E-value=98 Score=22.12 Aligned_cols=51 Identities=10% Similarity=-0.033 Sum_probs=30.0
Q ss_pred cCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 163 LSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 163 vsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
.++-+++.+..++...+|+++-+--.--.+...+++.++++++|| +..+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 344566666666554335555553333222333778899999988 776643
No 198
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=39.11 E-value=89 Score=27.29 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEE
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQ 133 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~l 133 (234)
+.+.+++.++..+ +++.+++.+|.+
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L 187 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSL 187 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccc
Confidence 3444444444332 344455444443
No 199
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=39.04 E-value=1.7e+02 Score=22.24 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
.++...+.+..|++.|.+.|++--. ..+|..+|...= . -.+++.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~-----------------~tkDg~~vv~Hd---i----------------~tL~e~ 54 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQ-----------------LTKDGVLVVIHD---I----------------PTLEEV 54 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEee-----------------EcCCCCEEEEcC---C----------------CCHHHH
Confidence 3477888999999999998875322 222333333221 1 125555
Q ss_pred HHHcCCCccCe-EEEecCCCCCCHHHHHHHHHHH-HHcCcccEEecCCCcHHHHHHHhhcCC------------------
Q 026727 120 LKRLDVDYIDL-YYQHRVDTSVSIEDTMGELKKL-VEEGKIKYIGLSEASADTIRRAHAVHP------------------ 179 (234)
Q Consensus 120 L~~Lg~d~iDl-~~lh~~~~~~~~~~~~~~l~~l-~~~G~ir~iGvsn~~~~~l~~~~~~~~------------------ 179 (234)
|+.+.- ++ +++.--+... -.+.++.+.++ ++-|.-+.+=+++|+.+.+..+.+..|
T Consensus 55 l~~~~~---~~~i~leiK~~~~-~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 130 (189)
T cd08556 55 LELVKG---GVGLNIELKEPTR-YPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLA 130 (189)
T ss_pred HHhccc---CcEEEEEECCCCC-chhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhh
Confidence 555543 33 3333222211 12334333333 344566777777777777666554311
Q ss_pred -------eeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 180 -------ITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 180 -------~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
+..+...+.. ....+++.|+++|+ +.+|..
T Consensus 131 ~~~~~~~~~~v~~~~~~----~~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 131 ELARALGADAVNPHYKL----LTPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred hHHHhcCCeEEccChhh----CCHHHHHHHHHcCCEEEEEcC
Confidence 1111222111 12689999999999 999854
No 200
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.85 E-value=2.5e+02 Score=24.04 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCC---hhHHHHHHHHhcC-CCCceEEEeeeccccCCCCCcCCCCCHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDH---DNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g---~sE~~lg~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (234)
.+.++..++++.+.+.|++.|.-+- |.|- .-.+++. .+++. .-.++.|+|-... +.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l----------------l~~ 109 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL----------------LAR 109 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh----------------HHH
Confidence 5678899999999999998776431 2110 1222222 23322 1235666665321 111
Q ss_pred HHHHHHHHcCCCccCeEEEecCCC--------CCCHHHHHHHHHHHHHcCc----ccEEecCCCcHHHHHHHhhc---CC
Q 026727 115 CCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRAHAV---HP 179 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvsn~~~~~l~~~~~~---~~ 179 (234)
.-+.|...|++.+- +-+|..++ ...+++++++++.+++.|. |..+.+...+.+++.++++. .+
T Consensus 110 -~~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 -RAAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred -HHHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 12334445554432 23343322 2357889999999999885 22444444555566555443 44
Q ss_pred eeEEeecCCCCCCC---------chhcHHHHHHHCCe-EEE
Q 026727 180 ITAVQMEYSLWTRE---------IEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 180 ~~~~q~~~n~~~~~---------~~~~l~~~~~~~gi-v~a 210 (234)
+.+.-++|.+.... ...++++..+++|+ +..
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 55555555554321 12568888888876 544
No 201
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=38.65 E-value=99 Score=24.75 Aligned_cols=84 Identities=8% Similarity=-0.086 Sum_probs=50.0
Q ss_pred ccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCC-CCCCchhcHHHHHHHC
Q 026727 127 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSL-WTREIEDDIIPLCRFL 205 (234)
Q Consensus 127 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~-~~~~~~~~l~~~~~~~ 205 (234)
-..+..+.+.. .-....+|.+.|.. .+-+.-.+.+.|.++++-....++-+.... -.......+++.|++.
T Consensus 22 ~~~V~~l~R~~-------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP-------SSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS-------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-------chhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 46777777654 12234455667764 566666678889888875444333333221 1111237899999999
Q ss_pred Ce-EEEeecccCCc
Q 026727 206 HI-FLPYNPSFCLQ 218 (234)
Q Consensus 206 gi-v~a~spl~~G~ 218 (234)
|| .+.+|.+....
T Consensus 94 gVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 94 GVKHFVPSSFGADY 107 (233)
T ss_dssp T-SEEEESEESSGT
T ss_pred ccceEEEEEecccc
Confidence 99 88888885544
No 202
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=38.32 E-value=93 Score=25.81 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHH-HHcCcccEEecCCC-c----HHHHHHH---hhcCCeeEE
Q 026727 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKL-VEEGKIKYIGLSEA-S----ADTIRRA---HAVHPITAV 183 (234)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l-~~~G~ir~iGvsn~-~----~~~l~~~---~~~~~~~~~ 183 (234)
.+.+++.|+-.| +|||.+=+-|-......++.++..-++ ++-|.--+.| .++ . ...+++. ++...|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 356778888888 899999888865544444445444443 3445444555 221 1 1112222 222456666
Q ss_pred eecCCCCCCCch--hcHHHHHHHCCe-EE
Q 026727 184 QMEYSLWTREIE--DDIIPLCRFLHI-FL 209 (234)
Q Consensus 184 q~~~n~~~~~~~--~~l~~~~~~~gi-v~ 209 (234)
.+.=..+.-+.+ ..+++.++++|. +.
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 665444443222 566777777777 65
No 203
>PRK08123 histidinol-phosphatase; Reviewed
Probab=38.17 E-value=2.4e+02 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCCEEeCCcCc
Q 026727 43 VGCSIIKETFNRGITLFDTSDVY 65 (234)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Y 65 (234)
...+.+.+|++.|+..|=.+++.
T Consensus 20 ~~e~~v~~Ai~~Gl~~i~~tdH~ 42 (270)
T PRK08123 20 DLEAYIERAIELGFTEITFTEHA 42 (270)
T ss_pred CHHHHHHHHHHcCCcEEEEeccC
Confidence 46899999999999987766653
No 204
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=37.84 E-value=1.1e+02 Score=26.30 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCC----CCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHH--HHhhcCCeeE
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDT----SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIR--RAHAVHPITA 182 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~----~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~--~~~~~~~~~~ 182 (234)
.+.+++.+.+-+++.++|++=++.+-.-+. .......+++|++..+++.-. + ++..+- .++. ....+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~-~g~~f 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALE-AGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHH-CCCCe
Confidence 567888999999999987543333322221 112335789999998876543 2 222221 1222 23222
Q ss_pred -EeecCCCCCCCchhcHHHHHHHCCe-EEE
Q 026727 183 -VQMEYSLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 183 -~q~~~n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
|=.+-+..+ .+.+.+.++++|+ +..
T Consensus 204 vN~tP~~~a~---~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 204 VNGTPSNIAD---DPALVELAEEKGVPIAG 230 (295)
T ss_dssp EE-SSSTTTT---SHHHHHHHHHHTEEEEE
T ss_pred EeccCccccC---CHHHHHHHHHcCCCeec
Confidence 222223322 2689999999999 653
No 205
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=37.76 E-value=1.5e+02 Score=21.23 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=44.4
Q ss_pred CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC---CccCeEEEecCCCC-CCHHHHHHHHHHHHHc
Q 026727 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV---DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (234)
Q Consensus 82 ~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 155 (234)
..|=.+.|+-|++. . ..+..+++.+.+.++.... ...|++++-.+... .+..++.+.|..|.+.
T Consensus 37 ~~R~GisVsKKvgk-A---------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 37 HFRVGISVSKKVGN-A---------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred CcEEEEEEecccCc-h---------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34556777778765 2 3588888888888876642 35699998877543 4667777777777654
No 206
>PRK00208 thiG thiazole synthase; Reviewed
Probab=37.63 E-value=2.5e+02 Score=23.57 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEe
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q 184 (234)
..+.+...+-.+-..+.++++.|-+=.+.++... .++.+++++.++|+++|.+- +-+|+-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeC
Confidence 4567777777777788889998888777765443 36789999999999999874 55777777777777665 344443
Q ss_pred ecCCCCCCC--c-hhcHHHHHHH-CCe-EEEeecc
Q 026727 185 MEYSLWTRE--I-EDDIIPLCRF-LHI-FLPYNPS 214 (234)
Q Consensus 185 ~~~n~~~~~--~-~~~l~~~~~~-~gi-v~a~spl 214 (234)
---.+.-.. . ..++++..++ .++ |++-+-.
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI 184 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGI 184 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCC
Confidence 211222111 1 1556777666 478 7765433
No 207
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.21 E-value=2.9e+02 Score=24.23 Aligned_cols=150 Identities=10% Similarity=0.025 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCC--hhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDH--DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g--~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
+.++..+....+.+.|++.|=.- .++. . +.....=+++++.--+++.|..=.. ..++.+...+ +-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~-~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~~-~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGP-GVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADALR-LG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCc-hhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHHH-HH
Confidence 45667777888899999988652 2221 0 0111122344431112333322111 1134433222 22
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC--CCc-HHHHHHHhhcCCeeEEeecCCCCCC-C
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS--EAS-ADTIRRAHAVHPITAVQMEYSLWTR-E 193 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs--n~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~ 193 (234)
+.|+. .++.++..|-+.. -++.+.+|+++-.+. |... -++ ..++.++++..-.+++|+..+-.-. .
T Consensus 210 ~~l~~-----~~l~~iEeP~~~~----d~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit 279 (368)
T cd03329 210 RALEE-----LGFFWYEDPLREA----SISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRADVNLVGGIT 279 (368)
T ss_pred HHhhh-----cCCCeEeCCCCch----hHHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 23333 3455666553322 246677888875555 4443 356 8888888888778999987666432 1
Q ss_pred chhcHHHHHHHCCe-EEEee
Q 026727 194 IEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 194 ~~~~l~~~~~~~gi-v~a~s 212 (234)
...++...|+++|+ +...+
T Consensus 280 ~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 280 GAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHHcCCEEEEEC
Confidence 12789999999999 86543
No 208
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=36.92 E-value=1.4e+02 Score=27.92 Aligned_cols=72 Identities=19% Similarity=0.069 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCee---EEeecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 140 VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPIT---AVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 140 ~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~---~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+..++.+.+.+.++..+|+.||+-.+...++..+++...+. +-|.-.++-.. -..++..-..|. +..-+|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 345678999999999999999999999999988888765443 33332323222 466777777788 8888887
No 209
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.41 E-value=1.1e+02 Score=25.86 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCccCeEEEecCC---CCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecC
Q 026727 111 YVRKCCEASLKRLDVDYIDLYYQHRVD---TSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~---~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~ 187 (234)
.-+..+-+.|.++|+++|++=..-.|. ...+.+++.+.+... ..++..+++ -+...++++++.. ++.+.+..
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~---~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~ 94 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR---PGVRYSALV-PNLRGAERALAAG-VDEVAVFV 94 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC---CCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEE
Confidence 344556677999999999996332232 112344444544432 246666665 4667788888753 22333222
Q ss_pred ---------CCCCCC-----chhcHHHHHHHCCe-EE
Q 026727 188 ---------SLWTRE-----IEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 188 ---------n~~~~~-----~~~~l~~~~~~~gi-v~ 209 (234)
|+-... ...+.+++++++|+ +.
T Consensus 95 ~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 95 SASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 221110 11567999999999 75
No 210
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=36.33 E-value=45 Score=30.01 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCcccCcceecccccCC-CCCCCCCHH----HHHHHHHHHHHcCCC--EEeCCcCcC
Q 026727 17 QGLEVSRLGFGCGGLSG-IYNKPLSHE----VGCSIIKETFNRGIT--LFDTSDVYG 66 (234)
Q Consensus 17 ~g~~vs~lglG~~~~~~-~~~~~~~~~----~~~~~l~~A~~~Gin--~~DtA~~Yg 66 (234)
-|+...++.||.-.+|. .|..- +.+ .+.+++...+++|++ |+||+-.-.
T Consensus 78 ~g~~~~~iiLGGDHLGP~~w~~l-paeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ca 133 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPNPWQHL-PAEEAMAKAKELIRAYVEAGFTKIHLDCSMDCA 133 (424)
T ss_dssp CT--GGGEEEEEEEESSCCCTTS-BHHHHHHHHHHHHHHHHCTT--EEEE---C--C
T ss_pred cCCchhhEEecCCCCCcccccCC-CHHHHHHHHHHHHHHHHHcCCceEeecCCCCCC
Confidence 36677789999988886 35442 444 377889999999999 899987654
No 211
>PRK06256 biotin synthase; Validated
Probab=36.22 E-value=2.8e+02 Score=23.83 Aligned_cols=118 Identities=20% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-eCCcCcCCCChhHHHHHHHHhcCCC-CceEEEeeeccccCCCCCcCCCCCHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLF-DTSDVYGVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~-DtA~~Yg~~g~sE~~lg~al~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (234)
.+.++..+.++.+.+.|++.| -.+..+++....-+.+-+.++..++ -.+-+.+-.+. .+++.
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~----- 154 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQ----- 154 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHH-----
Confidence 477888899999999998633 2233343311111234445543222 23333322221 22333
Q ss_pred HHHHHHcCCCccCeEEEec-------CCCCCCHHHHHHHHHHHHHcCccc----EEecCCCcHHHHHHH
Q 026727 117 EASLKRLDVDYIDLYYQHR-------VDTSVSIEDTMGELKKLVEEGKIK----YIGLSEASADTIRRA 174 (234)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~-------~~~~~~~~~~~~~l~~l~~~G~ir----~iGvsn~~~~~l~~~ 174 (234)
-+.|+..|.+.+-+- +.. .......++.+++++.+++.|.-- -+|+ +.+.+++.+.
T Consensus 155 l~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~ 221 (336)
T PRK06256 155 AERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEH 221 (336)
T ss_pred HHHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHH
Confidence 344677776643221 111 111234677889999999998522 2344 4455554443
No 212
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=36.09 E-value=2.4e+02 Score=23.90 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCCccCeEEEecCCCCCCH---HHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhh
Q 026727 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (234)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~ 176 (234)
..++.+.=.+.-++ ..+++++..|....+. .++++.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 44555555555554 4699999999776554 478999999999986 568899999999988765
No 213
>PRK02399 hypothetical protein; Provisional
Probab=35.67 E-value=1.9e+02 Score=26.02 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHH
Q 026727 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (234)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l 171 (234)
.++....++|.-...|++.+|--..- =++||+|+++|.+. ||=+.+..++
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~--gVlDlTttEv 248 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIA--GVLDLTTTEV 248 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCce--EEEEcchHHH
Confidence 34555555554444699999975442 36899999999985 4444444433
No 214
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=35.66 E-value=1.7e+02 Score=26.77 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=42.9
Q ss_pred HHHHcCcccEEecCCCcHHHHHHHhhc-------CC-eeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 151 KLVEEGKIKYIGLSEASADTIRRAHAV-------HP-ITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 151 ~l~~~G~ir~iGvsn~~~~~l~~~~~~-------~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+=+.|-...+|....+++++++.+.. .+ +-+|.+ .+.-+...+.++++.|.++|| ++..+-+
T Consensus 38 AVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa~ 109 (444)
T TIGR02814 38 AMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASAF 109 (444)
T ss_pred HHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEeccc
Confidence 345789999999999999988876543 24 555543 222222224678999999999 7766533
No 215
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.65 E-value=3e+02 Score=24.01 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHH--------------------HhcCCCCceEEEeeeccccC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKA--------------------LKQLPRDKIQLATKFGCFML 98 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~a--------------------l~~~~R~~~~i~tK~~~~~~ 98 (234)
.+.+....+.++|-+.|+.++=|...-. +-+.+.+. +. .....++|+|-.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~----svd~l~~~~v~~~KIaS~~~~n~pLL~~~A-~~gkPvilStGm----- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE----SADFLEDLGVPRFKIPSGEITNAPLLKKIA-RFGKPVILSTGM----- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH----HHHHHHhcCCCEEEECcccccCHHHHHHHH-hcCCcEEEECCC-----
Confidence 4778889999999999999997753222 22222211 11 123345555543
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHH-HHHHHHHHHHcCcccEEecCCCcHHHH
Q 026727 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIED-TMGELKKLVEEGKIKYIGLSEASADTI 171 (234)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvsn~~~~~l 171 (234)
.+.+.|..+++...+ -|.+.-++.++|+.... .+.++ -+.++..|++.=. .-||+|+|+....
T Consensus 143 --------atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 --------ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIE 207 (329)
T ss_pred --------CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHH
Confidence 247888888888754 34321258999987532 22222 3566666665432 3599999986543
No 216
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=35.48 E-value=2.9e+02 Score=24.44 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCcHHHHHHHhhcCCeeEEe
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvsn~~~~~l~~~~~~~~~~~~q 184 (234)
.++.+.. ..+-+.|.++|+++|++- +|... ++-++.++.+.+.|+ .+.++.+-.....++.+.+. .++.+.
T Consensus 22 ~~s~e~k-~~ia~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~ 93 (378)
T PRK11858 22 VFTNEEK-LAIARMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDC-GVDAVH 93 (378)
T ss_pred CCCHHHH-HHHHHHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhC-CcCEEE
Confidence 3555544 445566999999998874 34322 123555666665554 44455554557778877765 333444
Q ss_pred ecCCCCCC--------------CchhcHHHHHHHCCe-EEEeec
Q 026727 185 MEYSLWTR--------------EIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 185 ~~~n~~~~--------------~~~~~l~~~~~~~gi-v~a~sp 213 (234)
+-+..-+. +.-.+.+++++++|. +....+
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 43222221 011568889999999 665433
No 217
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=35.42 E-value=37 Score=28.66 Aligned_cols=53 Identities=21% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcH
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~ 168 (234)
-+.+.+..++.|-..+ +..=+.=+.--| |+...-..|++|++.|- -||.||..
T Consensus 65 N~iv~em~~eiLp~v~-~tPViaGv~atD---P~~~~~~fl~~lk~~Gf---~GV~NfPT 117 (268)
T PF09370_consen 65 NEIVMEMAREILPVVK-DTPVIAGVCATD---PFRDMDRFLDELKELGF---SGVQNFPT 117 (268)
T ss_dssp HHHHHHHHHHHGGG-S-SS-EEEEE-TT----TT--HHHHHHHHHHHT----SEEEE-S-
T ss_pred hHHHHHHHHhhhhhcc-CCCEEEEecCcC---CCCcHHHHHHHHHHhCC---ceEEECCc
Confidence 3444455566666665 222222233223 44566778888898886 58888863
No 218
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=35.17 E-value=3.1e+02 Score=24.09 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCC--ceEEEeeeccccCCCCCcCCCCCHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD--KIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~--~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (234)
.+.++..+.++.+.+.|++.|=-...-++....-+.+.+.++..+.. ++-| .+.+ .+.+.+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I--ei~~-----------lt~e~~---- 165 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI--EVQP-----------LNEEEY---- 165 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc--cccc-----------CCHHHH----
Confidence 47889999999999999997753322221012234455566542111 1111 1111 344444
Q ss_pred HHHHHHcCCCccCeEE----------EecCCCCCCHHHHHHHHHHHHHcCc
Q 026727 117 EASLKRLDVDYIDLYY----------QHRVDTSVSIEDTMGELKKLVEEGK 157 (234)
Q Consensus 117 ~~sL~~Lg~d~iDl~~----------lh~~~~~~~~~~~~~~l~~l~~~G~ 157 (234)
+.|+..|++.+-+.+ +|......+.++.+++++.+++.|.
T Consensus 166 -~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 166 -KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred -HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 667778877654432 1211223367788999999999985
No 219
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=34.32 E-value=3.3e+02 Score=24.06 Aligned_cols=83 Identities=8% Similarity=0.096 Sum_probs=52.2
Q ss_pred EEEecCCCC-----------CCHHHHHHHHHHHHHcCcccEEec-------CCCcHHHHH---HHhhcCCeeEEeecCCC
Q 026727 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGKIKYIGL-------SEASADTIR---RAHAVHPITAVQMEYSL 189 (234)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGv-------sn~~~~~l~---~~~~~~~~~~~q~~~n~ 189 (234)
+.||.|+.. .++++.+++.+...+... +.|-+ -|-+.++.+ +++...+-.++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 567888542 346777888777765544 43322 133445444 44444566899999999
Q ss_pred CCCCc--------hhcHHHHHHHCCe-EEEeecc
Q 026727 190 WTREI--------EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 190 ~~~~~--------~~~l~~~~~~~gi-v~a~spl 214 (234)
..... -..+.+..+++|| +....+-
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~ 328 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTR 328 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccc
Confidence 97532 1566777778889 8766554
No 220
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.20 E-value=3.1e+02 Score=23.74 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCC-CC-----hhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-DH-----DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-~g-----~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 113 (234)
+.++..+.+..+++.|++.|=.--..+. .+ ...+.+ +++++.-.+++-|..=... .++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan~----------~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCYM----------SWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECCC----------CCCHHHHH
Confidence 4566667778888999998754211111 00 112222 2344321223333221111 13444322
Q ss_pred HHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC
Q 026727 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR 192 (234)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~ 192 (234)
+.+++|. ..++.++..|-+.. -++.+.+|.+...|. +.|=+-++...+.++++....+++|...+-.-.
T Consensus 189 ----~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GG 258 (341)
T cd03327 189 ----KMARALE--KYELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGG 258 (341)
T ss_pred ----HHHHHhh--hcCCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCC
Confidence 2333332 24666666664332 366677777776665 455566788999999887778899987655432
Q ss_pred -CchhcHHHHHHHCCe-EEEee
Q 026727 193 -EIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 193 -~~~~~l~~~~~~~gi-v~a~s 212 (234)
....++.+.|+++|+ +...+
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 112789999999999 88764
No 221
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=34.10 E-value=1.8e+02 Score=26.77 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCC------HHHHHHHHHHHHHc-CcccE---------EecCCCcHHH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS------IEDTMGELKKLVEE-GKIKY---------IGLSEASADT 170 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~------~~~~~~~l~~l~~~-G~ir~---------iGvsn~~~~~ 170 (234)
.+.+...+ +-+.|.++|.+.|+++ .....+ -++.|+.++.+++. ..++. +|..++..+.
T Consensus 22 ~~t~dkl~-Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDMLP-ALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 44444444 5556888899888883 211100 12357777777665 22332 2222233232
Q ss_pred ----HHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EE
Q 026727 171 ----IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 171 ----l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
++.+.+ ..++++.+-..+-+...-...+++++++|. +.
T Consensus 97 v~~fv~~A~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 139 (467)
T PRK14041 97 VELFVKKVAE-YGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQ 139 (467)
T ss_pred hHHHHHHHHH-CCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEE
Confidence 333333 345555554444443333677888888888 66
No 222
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=34.08 E-value=2e+02 Score=21.40 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=44.2
Q ss_pred CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC----CccCeEEEecCCCC-CCHHHHHHHHHHHHH
Q 026727 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV----DYIDLYYQHRVDTS-VSIEDTMGELKKLVE 154 (234)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~----d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~ 154 (234)
.|=.+.|+-|++.. .....+++.+.++++.+.. ...|++++-.+... .++.++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45567778787643 3488899999999887643 45799999988643 466677777776655
No 223
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=33.93 E-value=3.5e+02 Score=24.27 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC--cccEEecC--CCcHHHHHHHhhcCCeeE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITA 182 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--n~~~~~l~~~~~~~~~~~ 182 (234)
++++...+-+.+.++.+ ++.++..|-+..+ |+.+.+|.+.- .+.-+|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45555555555554443 5788888765444 45555555552 34322221 247899999988877888
Q ss_pred EeecCCCCCCC-chhcHHHHHHHCCe-EEE
Q 026727 183 VQMEYSLWTRE-IEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a 210 (234)
+|+..+-.-.- ...++...|+++|+ ++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 88877765431 12789999999999 754
No 224
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=33.85 E-value=2.1e+02 Score=21.73 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcC--CCccCeEEEecCCC-CCCHHHHHHHHHHHHHc
Q 026727 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDT-SVSIEDTMGELKKLVEE 155 (234)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 155 (234)
.|=.+.|+-|++... ..+..+++.+.++++.+. ....|++++-.+.. ..+..++.+.|..|.+.
T Consensus 48 ~RlG~sVSKKvg~~A---------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA---------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc---------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455577777765322 347788888888887553 23448888877654 35677888888887765
No 225
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=33.79 E-value=1.9e+02 Score=25.21 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccEEecCCCcHHHHHHHhhc-CCeeEEeecCCCCCCCc-hhcHHHHHHHCCe-EEEeecc
Q 026727 158 IKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 158 ir~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi-v~a~spl 214 (234)
++..-+...+.+.+++++.. .+..++..+.|+..... ..++.+.|+++|+ ++.=..+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 34444444567777777643 34555556777754322 2789999999999 7754444
No 226
>PRK09389 (R)-citramalate synthase; Provisional
Probab=33.78 E-value=3.5e+02 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDV 64 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~ 64 (234)
.+.++..++.+...+.|+..|+....
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p 46 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSA 46 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 47788899999999999999998643
No 227
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=33.52 E-value=2.4e+02 Score=22.26 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=53.4
Q ss_pred CcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc----CCCCceEEEeee
Q 026727 18 GLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKF 93 (234)
Q Consensus 18 g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~----~~R~~~~i~tK~ 93 (234)
|.++--|||++... -+.+..+.|.. +++-+-.+|+.++... ..-++.+..+++. .|.-.|++++.+
T Consensus 33 ~~~~iNLGfsG~~~--------le~~~a~~ia~-~~a~~~~ld~~~N~~~-~~~~~~~~~fv~~iR~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 33 GLDVINLGFSGNGK--------LEPEVADLIAE-IDADLIVLDCGPNMSP-EEFRERLDGFVKTIREAHPDTPILLVSPI 102 (178)
T ss_dssp T-EEEEEE-TCCCS----------HHHHHHHHH-S--SEEEEEESHHCCT-TTHHHHHHHHHHHHHTT-SSS-EEEEE--
T ss_pred CCCeEeeeecCccc--------cCHHHHHHHhc-CCCCEEEEEeecCCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 55666666654322 33455555543 3777778887777553 3333333334433 566778888877
Q ss_pred ccccCCCCCcCCCCCHHHHHHHHHHHHHHcC-CCccCeEEEecCC
Q 026727 94 GCFMLDGVSIGVKGSPEYVRKCCEASLKRLD-VDYIDLYYQHRVD 137 (234)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~ 137 (234)
...... -........+..++.+++..+.|. -..-+|++++..+
T Consensus 103 ~~~~~~-~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 103 PYPAGY-FDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp --TTTT-S--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred Cccccc-cCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 644321 111112456788888888888882 2356888888653
No 228
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.51 E-value=3.6e+02 Score=24.30 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=53.3
Q ss_pred CcCcCCCChhHHHHHHHHhc----CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC-CccCeEEEecC
Q 026727 62 SDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV-DYIDLYYQHRV 136 (234)
Q Consensus 62 A~~Yg~~g~sE~~lg~al~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~-d~iDl~~lh~~ 136 (234)
.-.|| .|+-|-+++++ .+.+=++|.|-..... --+.+...+++.-++... ..+.++.++.|
T Consensus 64 d~V~G----g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 64 AAVFG----GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTP 129 (435)
T ss_pred ceEEC----cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCC
Confidence 35677 46777778776 3334455665543211 122233333332222211 13788888887
Q ss_pred CCCCCH----HHHHHHHHH-HHH-------cCcccEEe-cCC-Cc-HHHHHHHhhcCCeeEEe
Q 026727 137 DTSVSI----EDTMGELKK-LVE-------EGKIKYIG-LSE-AS-ADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 137 ~~~~~~----~~~~~~l~~-l~~-------~G~ir~iG-vsn-~~-~~~l~~~~~~~~~~~~q 184 (234)
...... +.++++|-+ +.+ .+.|--|| ..+ .+ .+.++++++...+.++.
T Consensus 130 gf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 130 SFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 654332 233444432 222 23455555 222 22 56788887775555543
No 229
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=33.42 E-value=2.7e+02 Score=23.71 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHHcCCCccCeEEEecCCCCCCHHHHH-----HHHHHHHHcCcccEEecCCCcHH-------HHHHHhhcCCeeEEeecC
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIEDTM-----GELKKLVEEGKIKYIGLSEASAD-------TIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~-----~~l~~l~~~G~ir~iGvsn~~~~-------~l~~~~~~~~~~~~q~~~ 187 (234)
++-++-.++|++.+..+.......+.. +.+.++..+--=|++|+.+.++. .+++......+.-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 777888889999888411112222222 46777777778889999887653 3444444444544444
Q ss_pred CCCCCC-----ch-hcHHHHHHHCCe-EEEe
Q 026727 188 SLWTRE-----IE-DDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 188 n~~~~~-----~~-~~l~~~~~~~gi-v~a~ 211 (234)
+...+. .. ..+.+.|+++|+ ++-+
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ih 163 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIH 163 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEE
Confidence 333221 11 569999999999 6653
No 230
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=33.19 E-value=3.4e+02 Score=23.87 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTS 62 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA 62 (234)
.+.++..++++.--+.||..|+.+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 377888999999999999999986
No 231
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.12 E-value=2.9e+02 Score=23.00 Aligned_cols=153 Identities=11% Similarity=0.128 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCCEEeCCcCcCC----C-------ChhHHHHHHHH------hc-CCCCceEEEeeeccccCCCCCcC
Q 026727 43 VGCSIIKETFNRGITLFDTSDVYGV----D-------HDNEIMVGKAL------KQ-LPRDKIQLATKFGCFMLDGVSIG 104 (234)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~----~-------g~sE~~lg~al------~~-~~R~~~~i~tK~~~~~~~~~~~~ 104 (234)
...+.+.+|.+.|+..+=.+++.-. + +.+..-+-..+ ++ ..+=+|.+..-+...
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 4678999999999997765554221 0 00111122222 21 211123333333221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-------------CCHHHH----HHHHHHHHHcCcccEEecCCC-
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-------------VSIEDT----MGELKKLVEEGKIKYIGLSEA- 166 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~~~----~~~l~~l~~~G~ir~iGvsn~- 166 (234)
+ .....+++.|++-..||+ +.-+|+.+.. .+.+++ ++.+.++++.|.+..||=-+.
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i 164 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLI 164 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHH
Confidence 1 123445556677666766 6777975321 122223 345777888888877764432
Q ss_pred ------c----HHHHHH----HhhcC-CeeEEeec--CCCCCCCchhcHHHHHHHCCe-EE
Q 026727 167 ------S----ADTIRR----AHAVH-PITAVQME--YSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 167 ------~----~~~l~~----~~~~~-~~~~~q~~--~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
. .+.+++ +.+.. .+.+|-.. +..-..-+..++++.|++.|+ ++
T Consensus 165 ~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 165 KKFGHRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred HHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 0 111222 22222 23444321 111122233689999999999 65
No 232
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.03 E-value=2.3e+02 Score=26.83 Aligned_cols=138 Identities=23% Similarity=0.333 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHH-----------cCCCEEeCCcCcCCCChhHHHHHHHHhc--CCCCc-eE----EEeeeccccCCCCC
Q 026727 41 HEVGCSIIKETFN-----------RGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK-IQ----LATKFGCFMLDGVS 102 (234)
Q Consensus 41 ~~~~~~~l~~A~~-----------~Gin~~DtA~~Yg~~g~sE~~lg~al~~--~~R~~-~~----i~tK~~~~~~~~~~ 102 (234)
..+..+++++|+. .||.|+-----||+||.--+++++-+-+ .-|+. ++ |-.|.
T Consensus 227 d~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KY--------- 297 (744)
T KOG0741|consen 227 DKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKY--------- 297 (744)
T ss_pred hHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHh---------
Confidence 4667788888875 5999998888899988877887777755 23332 21 22221
Q ss_pred cCCCCCHHHHHH---HHHHHHHHcCC-CccCeEEEecCCC----------CCC-----HHHHHHHHHHHHHcCcccEEec
Q 026727 103 IGVKGSPEYVRK---CCEASLKRLDV-DYIDLYYQHRVDT----------SVS-----IEDTMGELKKLVEEGKIKYIGL 163 (234)
Q Consensus 103 ~~~~~~~~~i~~---~~~~sL~~Lg~-d~iDl~~lh~~~~----------~~~-----~~~~~~~l~~l~~~G~ir~iGv 163 (234)
..-+.+.+++ ..++--+++|- .-+.+..+...|. .+. +.+.+..|+-.-+-..|--||.
T Consensus 298 --VGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGM 375 (744)
T KOG0741|consen 298 --VGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGM 375 (744)
T ss_pred --hcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEec
Confidence 1134555554 45566678874 4566666654431 111 2345566666666678999999
Q ss_pred CCCcHHHHHHHhhc-CCeeEEeecCCCCC
Q 026727 164 SEASADTIRRAHAV-HPITAVQMEYSLWT 191 (234)
Q Consensus 164 sn~~~~~l~~~~~~-~~~~~~q~~~n~~~ 191 (234)
.|-. +.|.+++=. +.+ -+|++.++=+
T Consensus 376 TNR~-DlIDEALLRPGRl-EVqmEIsLPD 402 (744)
T KOG0741|consen 376 TNRK-DLIDEALLRPGRL-EVQMEISLPD 402 (744)
T ss_pred cCch-hhHHHHhcCCCce-EEEEEEeCCC
Confidence 9854 667666433 333 3566555544
No 233
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=32.96 E-value=2e+02 Score=21.31 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEeCCcCcCCC-------C----------hhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCC
Q 026727 45 CSIIKETFNRGITLFDTSDVYGVD-------H----------DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKG 107 (234)
Q Consensus 45 ~~~l~~A~~~Gin~~DtA~~Yg~~-------g----------~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~ 107 (234)
...+..+++.|+|+||.--.++.+ | ..-+.+.+++...+.+-|++.-|-.... .
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~~~~---------~ 101 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENHCSP---------D 101 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhhCCH---------H
Confidence 467889999999999953222210 1 1222334455445667777777754321 1
Q ss_pred CHHHHHHHHHHHHH
Q 026727 108 SPEYVRKCCEASLK 121 (234)
Q Consensus 108 ~~~~i~~~~~~sL~ 121 (234)
..+.+.+-+++.|.
T Consensus 102 ~~~~l~~~l~~~~g 115 (135)
T smart00148 102 QQAKMAQMFKEIFG 115 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 13445555565553
No 234
>PTZ00413 lipoate synthase; Provisional
Probab=32.65 E-value=3.7e+02 Score=24.17 Aligned_cols=159 Identities=15% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeCCcCcCC---CChhHHHHHHHHhcCCC--CceEEEeeeccccCCCCCcCCCCCHHHH
Q 026727 38 PLSHEVGCSIIKETFNRGITLFDTSDVYGV---DHDNEIMVGKALKQLPR--DKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (234)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~---~g~sE~~lg~al~~~~R--~~~~i~tK~~~~~~~~~~~~~~~~~~~i 112 (234)
..+.++..++-+++.+.|++|+=.+..-.+ ++.++.+ .++++.++. .++.|..=++-.. .+.+.+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~-a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l 245 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHV-ARCVELIKESNPELLLEALVGDFH---------GDLKSV 245 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHH-HHHHHHHHccCCCCeEEEcCCccc---------cCHHHH
Confidence 357888888888888999987754444332 1334433 445554322 2455555444221 122222
Q ss_pred HHHHHHHHHHcCCCccCeEEEecCCC-----------CCCHHHHHHHHHHHHHc---Cccc----EEecCCCcHHHHHHH
Q 026727 113 RKCCEASLKRLDVDYIDLYYQHRVDT-----------SVSIEDTMGELKKLVEE---GKIK----YIGLSEASADTIRRA 174 (234)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~---G~ir----~iGvsn~~~~~l~~~ 174 (234)
+.|..-| +|. +-|+.+. ....++.|+.|+.+++. |... -+|+..-..+.++-+
T Consensus 246 -----~~L~eAG---~dv-ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m 316 (398)
T PTZ00413 246 -----EKLANSP---LSV-YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTL 316 (398)
T ss_pred -----HHHHhcC---CCE-EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHH
Confidence 2233334 444 3455422 13567889999988874 3221 256665444433322
Q ss_pred hhc--CCeeEEee-----------cCCCCCCC-chhcHHHHHHHCCe-EEEeeccc
Q 026727 175 HAV--HPITAVQM-----------EYSLWTRE-IEDDIIPLCRFLHI-FLPYNPSF 215 (234)
Q Consensus 175 ~~~--~~~~~~q~-----------~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl~ 215 (234)
.+. ..++++.+ +..=+.+. ....+-+++.+.|. .++.+||.
T Consensus 317 ~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlV 372 (398)
T PTZ00413 317 RDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLV 372 (398)
T ss_pred HHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 222 23333222 11111111 12678888999999 99999993
No 235
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=32.56 E-value=1.1e+02 Score=27.96 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRR 173 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~ 173 (234)
.+.+...+.+.+.|+.||+++ |-+ ...+..+...-+++++|+++|++ |...|+ .+.+++
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~ 106 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELEL 106 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHH
Confidence 456888999999999999974 743 22223344567889999999996 677766 444443
No 236
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.37 E-value=3e+02 Score=22.96 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcC-cccEEecCCCcH------HH-HHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe--EEEe
Q 026727 142 IEDTMGELKKLVEEG-KIKYIGLSEASA------DT-IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI--FLPY 211 (234)
Q Consensus 142 ~~~~~~~l~~l~~~G-~ir~iGvsn~~~------~~-l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi--v~a~ 211 (234)
++.+++.++++++.. .+.-+.++-+|+ +. ++++.+ ..++.+-++.=+.. ...++++.|+++|+ ++..
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~-aGvdgviipDlp~e--e~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKE-VGVDGVLVADLPLE--ESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHH-cCCCEEEECCCChH--HHHHHHHHHHHCCCcEEEEE
Confidence 346677788887652 333334433333 43 333333 34444333322222 12789999999998 4455
Q ss_pred ecc
Q 026727 212 NPS 214 (234)
Q Consensus 212 spl 214 (234)
+|-
T Consensus 148 ~P~ 150 (256)
T TIGR00262 148 APN 150 (256)
T ss_pred CCC
Confidence 554
No 237
>PHA02128 hypothetical protein
Probab=32.18 E-value=1.9e+02 Score=20.79 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc-----------------CC-eeEE---eecCCCCCCCchhcHHHH
Q 026727 143 EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-----------------HP-ITAV---QMEYSLWTREIEDDIIPL 201 (234)
Q Consensus 143 ~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~-----------------~~-~~~~---q~~~n~~~~~~~~~l~~~ 201 (234)
...+....++..+|-+|-|-....+..++.++... .| ..+. ..+|.+-.+....++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 35677778888999999888877776666655432 12 2233 336777776656899999
Q ss_pred HHHCCe-EEEe
Q 026727 202 CRFLHI-FLPY 211 (234)
Q Consensus 202 ~~~~gi-v~a~ 211 (234)
+--+|| ++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 999999 6654
No 238
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=32.18 E-value=2e+02 Score=21.02 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=44.9
Q ss_pred CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCC---ccCeEEEecCCCC-CCHHHHHHHHHHHHHc
Q 026727 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVD---YIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (234)
Q Consensus 82 ~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d---~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 155 (234)
.+|=.+.|+-|++.. .....+++.+.++.+.+..+ -.|++++-.+... .+..++.+.|+.+.+.
T Consensus 47 ~~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 47 GPRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CCEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 356668888887753 23778888888888777643 3699999887543 4667777777766554
No 239
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.95 E-value=3.6e+02 Score=23.77 Aligned_cols=154 Identities=14% Similarity=0.049 Sum_probs=77.2
Q ss_pred CCHHHHHHHH-------HHHHHcCCCEEeC--C-----------------cCcCCCChhHHH---HH---HHHhc-CCCC
Q 026727 39 LSHEVGCSII-------KETFNRGITLFDT--S-----------------DVYGVDHDNEIM---VG---KALKQ-LPRD 85 (234)
Q Consensus 39 ~~~~~~~~~l-------~~A~~~Gin~~Dt--A-----------------~~Yg~~g~sE~~---lg---~al~~-~~R~ 85 (234)
++.++..+++ +.|.++|+.-++- | +-|| |.-|.. +- +++++ .. +
T Consensus 149 mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYG--GslENR~Rf~~Eiv~aVr~~vg-~ 225 (362)
T PRK10605 149 LELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYG--GSVENRARLVLEVVDAGIAEWG-A 225 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCC--CcHHHHHHHHHHHHHHHHHHcC-C
Confidence 4666666554 4666789987763 2 2355 433321 12 22333 32 3
Q ss_pred ceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 86 KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
+ +|..|+.+....+. .....+.+..-..+-+-|+..|+|+|++-.-++... .... ....+++++.=.+.-++++.
T Consensus 226 ~-~igvRis~~~~~~~-~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~~~--~~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 226 D-RIGIRISPLGTFNN-VDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EPYS--DAFREKVRARFHGVIIGAGA 300 (362)
T ss_pred C-eEEEEECCcccccc-CCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC-cccc--HHHHHHHHHHCCCCEEEeCC
Confidence 3 48889875421000 011245554334555666777888877643211111 1111 11112333221223455556
Q ss_pred CcHHHHHHHhhcCCeeEEee-cCCCCCCCchhcHHHHHHH
Q 026727 166 ASADTIRRAHAVHPITAVQM-EYSLWTREIEDDIIPLCRF 204 (234)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~q~-~~n~~~~~~~~~l~~~~~~ 204 (234)
++++..+++++....+.+-+ +--+.+ ++++..+++
T Consensus 301 ~~~~~ae~~i~~G~~D~V~~gR~~iad----Pd~~~k~~~ 336 (362)
T PRK10605 301 YTAEKAETLIGKGLIDAVAFGRDYIAN----PDLVARLQR 336 (362)
T ss_pred CCHHHHHHHHHcCCCCEEEECHHhhhC----ccHHHHHhc
Confidence 78999999998877776665 333333 345555554
No 240
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=31.90 E-value=1.1e+02 Score=27.28 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=46.5
Q ss_pred HcCCCEEe-----CCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCC-CCcCCCCC----HHHHHHHHHHHHHH
Q 026727 53 NRGITLFD-----TSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDG-VSIGVKGS----PEYVRKCCEASLKR 122 (234)
Q Consensus 53 ~~Gin~~D-----tA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~-~~~~~~~~----~~~i~~~~~~sL~~ 122 (234)
+.+...+| ++.-+.. ++..+.+.+++....=+||-||+-..-... ......++ -+.|++.+.+.|++
T Consensus 109 ~~~~~~yD~fiii~s~rf~~---ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFTE---NDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp HTTGGG-SEEEEEESSS--H---HHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred HccccccCEEEEEeCCCCch---hhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 44555555 3444543 888899999865555678999986421100 00001122 45778888999999
Q ss_pred cCCCccCeEEEecCCCC
Q 026727 123 LDVDYIDLYYQHRVDTS 139 (234)
Q Consensus 123 Lg~d~iDl~~lh~~~~~ 139 (234)
-|+....+|++-+.+..
T Consensus 186 ~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp TT-SS--EEEB-TTTTT
T ss_pred cCCCcCceEEEeCCCcc
Confidence 99999999999887654
No 241
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=31.85 E-value=1.7e+02 Score=21.92 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
.+.+.+...+++..+.- -+.-.+=..|...+...+.+.|+.+++.|. ..||+.+
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~-~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAGY-LKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 44555655555544322 233233345677889999999999999994 4588765
No 242
>COG0218 Predicted GTPase [General function prediction only]
Probab=31.84 E-value=2.8e+02 Score=22.43 Aligned_cols=100 Identities=16% Similarity=0.016 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHH------cCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 42 EVGCSIIKETFN------RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 42 ~~~~~~l~~A~~------~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
+...+++..-++ ..+-.+|.-..-. ..+..+=++|......=+++.||.-- .......+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~ 156 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHH
Confidence 345555555443 3555778654433 35677777887766777889999743 346667778
Q ss_pred HHHHHHHcCCCccCe--EEEecCCCCCCHHHHHHHHHHHHHc
Q 026727 116 CEASLKRLDVDYIDL--YYQHRVDTSVSIEDTMGELKKLVEE 155 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (234)
+....+.|+.+..|- +.+........+++++..+.+....
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888888888776665 4444444456688888888777653
No 243
>PRK05968 hypothetical protein; Provisional
Probab=31.44 E-value=2.5e+02 Score=24.87 Aligned_cols=48 Identities=8% Similarity=-0.024 Sum_probs=31.7
Q ss_pred cHHHHHHHhhcCCeeEEeecCCCCCCCc-hhcHHHHHHHCCe-EEEeecc
Q 026727 167 SADTIRRAHAVHPITAVQMEYSLWTREI-EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi-v~a~spl 214 (234)
+.+.+++++...+..+++.+.|+..... -.++.+.|+++|+ ++.=+..
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 5677777765456666666666654322 2778899999999 7754444
No 244
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=31.06 E-value=91 Score=28.11 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCcccCcceecccccCC-CCCCCCCHH----HHHHHHHHHHHcCCC--EEeCCcCcC
Q 026727 17 QGLEVSRLGFGCGGLSG-IYNKPLSHE----VGCSIIKETFNRGIT--LFDTSDVYG 66 (234)
Q Consensus 17 ~g~~vs~lglG~~~~~~-~~~~~~~~~----~~~~~l~~A~~~Gin--~~DtA~~Yg 66 (234)
.|+...++.||.-.+|. .|... +.+ .+.+++..-+++|++ |+||+-...
T Consensus 75 ~gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 130 (421)
T PRK15052 75 VGFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRAGFSKIHLDASMSCA 130 (421)
T ss_pred cCCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCcc
Confidence 35666689999988875 46553 333 377889999999999 889886643
No 245
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=31.00 E-value=19 Score=32.77 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=36.1
Q ss_pred CcccEEecCCCcHHHHHHHhhcC-CeeEEeecCCCCCCCchhcHHHHHHHCCe
Q 026727 156 GKIKYIGLSEASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCRFLHI 207 (234)
Q Consensus 156 G~ir~iGvsn~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 207 (234)
+.++++|+..++.+.+.++.... .-+.++....++.....+++++.|++.||
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi 316 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGI 316 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCC
Confidence 56788898888888887776542 23445555566655445788999988888
No 246
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=51 Score=27.46 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 026727 34 IYNKPLSHEVGCSIIKETFNRGI 56 (234)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi 56 (234)
.|..+.+++++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 47778899999999999999998
No 247
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.78 E-value=2.9e+02 Score=22.35 Aligned_cols=22 Identities=9% Similarity=0.372 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT 61 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt 61 (234)
.++.....+..|++.|+..|++
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3577889999999999998874
No 248
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=30.55 E-value=2.9e+02 Score=23.46 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHc--CCCEEeCCcCcCCCChhHHHHHHHHhcC-CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 41 HEVGCSIIKETFNR--GITLFDTSDVYGVDHDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 41 ~~~~~~~l~~A~~~--Gin~~DtA~~Yg~~g~sE~~lg~al~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
-+.+..+.++|+.+ |+.+.-.-..|= .+++.+-+++.+. ....+++.|=+ -..+++.++
T Consensus 15 GeTAe~v~~A~l~QF~~~~~~~~~~p~v---~~~~~~~~i~~~~~~~~~iV~~Tlv---------------~~elr~~l~ 76 (269)
T PRK05339 15 GETAETVGRAALSQFPNVEFEEHRYPFV---RTEEKADEVLEEINAERPIVFYTLV---------------DPELREILE 76 (269)
T ss_pred HHHHHHHHHHHHHhCCCCCeeEEEeCCc---CCHHHHHHHHHHHHhcCCEEEEeCC---------------CHHHHHHHH
Confidence 35566666666643 454321222222 3677777777663 34556666654 456889999
Q ss_pred HHHHHcCCCccCeE
Q 026727 118 ASLKRLDVDYIDLY 131 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~ 131 (234)
+..+.+|+.++|++
T Consensus 77 ~~~~~~~i~~vdll 90 (269)
T PRK05339 77 ERCAEFGIPCIDIL 90 (269)
T ss_pred HHHHHcCCCEEecc
Confidence 99999999999996
No 249
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.47 E-value=3.7e+02 Score=23.64 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcC----cccEEecC--CCcHHHHHHHh---hcCCeeEEeecCCCCCCC-----ch---hcHHHHHH
Q 026727 141 SIEDTMGELKKLVEEG----KIKYIGLS--EASADTIRRAH---AVHPITAVQMEYSLWTRE-----IE---DDIIPLCR 203 (234)
Q Consensus 141 ~~~~~~~~l~~l~~~G----~ir~iGvs--n~~~~~l~~~~---~~~~~~~~q~~~n~~~~~-----~~---~~l~~~~~ 203 (234)
++++++++++++.+.+ +++++=+. |.+.++++++. +..+..++-++||+.... .. ..+.+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 4688999999887754 23344333 44445555544 334567888899987631 11 56677789
Q ss_pred HCCe-EEEeecc
Q 026727 204 FLHI-FLPYNPS 214 (234)
Q Consensus 204 ~~gi-v~a~spl 214 (234)
++|+ +....+.
T Consensus 324 ~~gi~v~ir~~~ 335 (356)
T PRK14455 324 KNGVNCTIRREH 335 (356)
T ss_pred HCCCcEEEeCCC
Confidence 9999 7766555
No 250
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=30.36 E-value=1.2e+02 Score=24.90 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCEEeCCcCc
Q 026727 46 SIIKETFNRGITLFDTSDVY 65 (234)
Q Consensus 46 ~~l~~A~~~Gin~~DtA~~Y 65 (234)
.-+...++.|||+||-=..+
T Consensus 41 ~~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 41 LSITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CCHHHHHhcCceEEEEEeee
Confidence 34678899999999954333
No 251
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=29.89 E-value=2.9e+02 Score=22.64 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT 61 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt 61 (234)
.+|.....+..|++.|...|++
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~ 41 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEF 41 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEE
Confidence 4588899999999999998874
No 252
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.79 E-value=3.1e+02 Score=24.63 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhh--cCCeeEEeecCCCCCCCch-hcHHHHHHHCCe-EEEeecccCC
Q 026727 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWTREIE-DDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 142 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi-v~a~spl~~G 217 (234)
...+.+.++++.++.-|....+-.-+.+.+.+++. ..+...+..+-|+...-.. ..+.+.|+++|+ ++.=+.++++
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 44677888888888888877777777766665553 4677888888898875433 889999999999 8877777655
No 253
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.78 E-value=53 Score=25.54 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCC-------C-------CCCHHHHHHHHHHHHHcC-cccEEecCCC--cHHHHHHH
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVD-------T-------SVSIEDTMGELKKLVEEG-KIKYIGLSEA--SADTIRRA 174 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~-------~-------~~~~~~~~~~l~~l~~~G-~ir~iGvsn~--~~~~l~~~ 174 (234)
+.++++...+.+-.+-.|++.-.... . .....+++++|.++++.| +|..+|..|. +...+.++
T Consensus 19 ~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~l 98 (176)
T PF06506_consen 19 LEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEEL 98 (176)
T ss_dssp HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHH
Confidence 44555555555344668888776431 0 122457888988888666 6666666664 35667776
Q ss_pred hhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 175 HAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 175 ~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
+. +.+.+..|+- .+.-...+..+++.|+ ++.-+.+
T Consensus 99 l~---~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 99 LG---VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp HT----EEEEEEESS--HHHHHHHHHHHHHTT--EEEESHH
T ss_pred hC---CceEEEEECC--HHHHHHHHHHHHHcCCcEEECCHH
Confidence 64 3444444432 2222788889999999 7766554
No 254
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=29.74 E-value=3.6e+02 Score=23.17 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCC---ChhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCCCCHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~---g~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (234)
.+.++..++++.+.+.|+..|--+- |-| ..-.+++. .+++.. -.++.|+|-.. .+.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li~-~i~~~~~l~~i~itTNG~----------------ll~~ 105 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLVA-RLGKLPGLEELSLTTNGS----------------RLAR 105 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHHH-HHHhCCCCceEEEEeChh----------------HHHH
Confidence 5778899999999999998776431 211 01223332 233221 12455555421 1222
Q ss_pred HHHHHHHHcCCCccCeEEEecCCC--------CCCHHHHHHHHHHHHHcCc--c--cEEecCCCcHHHHHHHhhc---CC
Q 026727 115 CCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK--I--KYIGLSEASADTIRRAHAV---HP 179 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~--i--r~iGvsn~~~~~l~~~~~~---~~ 179 (234)
.-+.|...|++++- +-++..++ ...++.+++.++.+++.|. | ..+.+...+.+++.++++. .+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 34456666766654 24444432 1346789999999999885 2 2344444666666665543 34
Q ss_pred eeEEeecCCCC
Q 026727 180 ITAVQMEYSLW 190 (234)
Q Consensus 180 ~~~~q~~~n~~ 190 (234)
+++.-+++-++
T Consensus 184 i~~~~ie~mP~ 194 (329)
T PRK13361 184 LDIAFIEEMPL 194 (329)
T ss_pred CeEEEEecccC
Confidence 44444444443
No 255
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=29.69 E-value=4.6e+02 Score=24.37 Aligned_cols=92 Identities=8% Similarity=-0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCC
Q 026727 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSL 189 (234)
Q Consensus 110 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~ 189 (234)
+.+.+..++. ..-|.|.||+=.--. ....+.+...++.+++...+ -|.|-+++++.++++++.+..-+|-+ +.
T Consensus 165 ~~i~~~A~~~-~~~GADIIDIG~~st---~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdiINsV--s~ 237 (499)
T TIGR00284 165 DGIEGLAARM-ERDGADMVALGTGSF---DDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASGVIMP--DV 237 (499)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCCcC---CCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCEEEEC--Cc
Confidence 4444443333 356788888843221 11223456666666655223 38899999999999987643333322 22
Q ss_pred CCCCchhcHHHHHHHCCe-EEEe
Q 026727 190 WTREIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 190 ~~~~~~~~l~~~~~~~gi-v~a~ 211 (234)
.+ .+++++.+++.|. ++.+
T Consensus 238 ~~---~d~~~~l~a~~g~~vVlm 257 (499)
T TIGR00284 238 EN---AVELASEKKLPEDAFVVV 257 (499)
T ss_pred cc---hhHHHHHHHHcCCeEEEE
Confidence 11 1456677777766 5544
No 256
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=29.59 E-value=2.4e+02 Score=23.71 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCcccEE
Q 026727 144 DTMGELKKLVEEGKIKYI 161 (234)
Q Consensus 144 ~~~~~l~~l~~~G~ir~i 161 (234)
..|-.|++++++|+.--+
T Consensus 150 ~~wpTL~em~~~GkrViv 167 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCCHHHHHhCCCEEEE
Confidence 358899999999986544
No 257
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=29.56 E-value=3e+02 Score=22.19 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT 61 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt 61 (234)
.+|.....+..|++.|+..+++
T Consensus 11 ~pENT~~af~~a~~~g~d~vE~ 32 (234)
T cd08570 11 YPENTLLAFEKAVEAGADAIET 32 (234)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3477889999999999998875
No 258
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=29.48 E-value=68 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=27.7
Q ss_pred ccCcceecccccCCCCCC------CCCHHHHHHHHHHHHHcCCCE
Q 026727 20 EVSRLGFGCGGLSGIYNK------PLSHEVGCSIIKETFNRGITL 58 (234)
Q Consensus 20 ~vs~lglG~~~~~~~~~~------~~~~~~~~~~l~~A~~~Gin~ 58 (234)
-+|.-||||--+.-+-.- .++.....-+++.|+++||..
T Consensus 8 ViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~ 52 (291)
T COG1210 8 VIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEE 52 (291)
T ss_pred EEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCE
Confidence 467889999766543111 246667888999999999963
No 259
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.48 E-value=1.3e+02 Score=27.23 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh 134 (234)
.+.+.+.+.++..+ .|+.+++.+|.+.
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~ 231 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLY 231 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEcccc
Confidence 34555555555554 3555555555543
No 260
>PRK10551 phage resistance protein; Provisional
Probab=29.16 E-value=4.7e+02 Score=24.26 Aligned_cols=115 Identities=11% Similarity=0.125 Sum_probs=64.9
Q ss_pred ceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHHHHHHHHHHHHcCcccEEecC
Q 026727 86 KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLS 164 (234)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs 164 (234)
++.|+-.+.+.. +..+.+...+.+.++.++.+.. .+.+.-.+.. ....+..+.++.|++.|. .|.+.
T Consensus 349 ~~~lsINis~~~---------l~~~~f~~~l~~~l~~~~~~~~-~LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialD 416 (518)
T PRK10551 349 GAKLGINISPAH---------LHSDSFKADVQRLLASLPADHF-QIVLEITERDMVQEEEATKLFAWLHSQGI--EIAID 416 (518)
T ss_pred CcEEEEEeCHHH---------HCCchHHHHHHHHHHhCCCCcc-eEEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEE
Confidence 455665655443 3345567778888888886532 3334333221 122456688899999997 35555
Q ss_pred CCcH--HHHHHHhhcCCeeEEeecCCCCC---CC-----chhcHHHHHHHCCe-EEEeec
Q 026727 165 EASA--DTIRRAHAVHPITAVQMEYSLWT---RE-----IEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 165 n~~~--~~l~~~~~~~~~~~~q~~~n~~~---~~-----~~~~l~~~~~~~gi-v~a~sp 213 (234)
+|.. ..+..+ ...+++.+-+.-+... .+ .-..+++.|++.|+ ++|-+.
T Consensus 417 DFGtg~ssl~~L-~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGV 475 (518)
T PRK10551 417 DFGTGHSALIYL-ERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGV 475 (518)
T ss_pred CCCCCchhHHHH-HhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5532 122222 2235555555432222 11 12568999999999 887543
No 261
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=29.10 E-value=2.9e+02 Score=23.07 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCC-CHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhh
Q 026727 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (234)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~ 176 (234)
..+.+.-....+=+.+.+++++|-+=.+-++.... +..+++++-|.|+++|-+- +--++-++-..+++.+
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V-lPY~~dD~v~arrLee 149 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV-LPYTTDDPVLARRLEE 149 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE-eeccCCCHHHHHHHHh
Confidence 35677777777778888999998887776665543 4568999999999999764 3334445444455544
No 262
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=29.07 E-value=1.8e+02 Score=26.93 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 159 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 159 (234)
..|+.+.+++.+....-|..+ ||.++|.......- . +.+..+-++|.|+
T Consensus 30 ~~Pe~ll~al~~r~~~tghPr-~Lt~i~~~~~Gd~~-~--~Gld~ia~~g~ik 78 (527)
T COG4670 30 GCPEELLKALGERYLETGHPR-DLTFISPTGLGDRG-G--RGLDHIAKEGLIK 78 (527)
T ss_pred CCHHHHHHHHHHHHHhhCCCC-ceEEEcccCCCCcc-c--CCcchhhhhhhhh
Confidence 459999999999999999765 99999965432221 1 3444444455555
No 263
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.96 E-value=3.8e+02 Score=23.15 Aligned_cols=134 Identities=12% Similarity=0.070 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEe----------CCcCcCCC-ChhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCCC
Q 026727 40 SHEVGCSIIKETFNRGITLFD----------TSDVYGVD-HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKG 107 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~~-g~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 107 (234)
+.++..+....+.+.|+..|| +...||.. -+.-+.+.+.++... .-++-|+.|+.....+ ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 567777777888889999999 33445520 012233444444311 1246688888643311 01
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCC-CCC--------H-HHHHHHHHHHHHcC-cccEEecCC-CcHHHHHHHh
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVS--------I-EDTMGELKKLVEEG-KIKYIGLSE-ASADTIRRAH 175 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~--------~-~~~~~~l~~l~~~G-~ir~iGvsn-~~~~~l~~~~ 175 (234)
+.+.. ..+-+.+...| +|.+.+|.-.. ... . .--|+...++++.- .|.-||..+ ++.+.+.+.+
T Consensus 139 ~~~~~-~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFL-CDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHH-HHHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 11222 23444555555 77889997532 100 0 01477777787765 688888776 6677777766
Q ss_pred hcCCeeEEee
Q 026727 176 AVHPITAVQM 185 (234)
Q Consensus 176 ~~~~~~~~q~ 185 (234)
+ ..+.+|+
T Consensus 215 ~--g~dgVMi 222 (318)
T TIGR00742 215 S--HVDGVMV 222 (318)
T ss_pred h--CCCEEEE
Confidence 4 3455554
No 264
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=28.94 E-value=4.3e+02 Score=23.72 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHHHHHH-----------HHcCCCccCeEEEecCCCC-----CCHHHHHHHHHHHHHc-CcccEEecC---CCcHH
Q 026727 110 EYVRKCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VSIEDTMGELKKLVEE-GKIKYIGLS---EASAD 169 (234)
Q Consensus 110 ~~i~~~~~~sL-----------~~Lg~d~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~~-G~ir~iGvs---n~~~~ 169 (234)
+.+++.+++.. +.++ +|++.||....+ .+.++..+..++..+. +.---|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666554 5565 688888865332 2345667777766443 333334333 46788
Q ss_pred HHHHHhhc---CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeecc
Q 026727 170 TIRRAHAV---HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 170 ~l~~~~~~---~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl 214 (234)
.++++++. .++-++-. +.+ .-..+.+.|+++|. +++++|.
T Consensus 205 VLeaaLe~~~G~kpLL~SA-----t~e~Ny~~ia~lAk~yg~~Vvv~s~~ 249 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASA-----NLDLDYEKIANAAKKYGHVVLSWTIM 249 (389)
T ss_pred HHHHHHHHhCCCCcEEEec-----CchhhHHHHHHHHHHhCCeEEEEcCC
Confidence 88888776 23443332 222 23789999999999 9999987
No 265
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=28.90 E-value=1.7e+02 Score=25.64 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHh
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALK 80 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~ 80 (234)
.+.+++.+.++.+.++|+..+-.--.||-||++++-+-+.++
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~ 174 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELK 174 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHH
Confidence 345556666666666666433322345544555555544443
No 266
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.82 E-value=1.4e+02 Score=26.43 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred cCcceecccccCC----CCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHh
Q 026727 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALK 80 (234)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~ 80 (234)
+.++.+|.-++.. ..+...+.+++.+.++.+.++|+..+...-.||-||++.+.+-+.++
T Consensus 118 v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~ 181 (378)
T PRK05660 118 VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLR 181 (378)
T ss_pred CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHH
No 267
>PRK11024 colicin uptake protein TolR; Provisional
Probab=28.61 E-value=1.8e+02 Score=21.63 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 164 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 164 (234)
.+.+.+...+++.+..= -|...+=..|...+...+.+.|+.+++.|. ..+++.
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 34556655555554432 233334445777889999999999999984 446664
No 268
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=28.59 E-value=3.3e+02 Score=23.78 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHH-------HHhcCCCCceEEEeeeccccCCCCCcCCCCCHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGK-------ALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~-------al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~ 111 (234)
.+.++...+++.+.+.|++=+=-+ | | |..+-+ .+++..-.++-++|-..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---G--G--EPllR~dl~eIi~~l~~~~~~~islTTNG~----------------- 98 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---G--G--EPLLRKDLDEIIARLARLGIRDLSLTTNGV----------------- 98 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---C--C--CchhhcCHHHHHHHHhhcccceEEEecchh-----------------
Confidence 468999999999999999976432 2 1 333222 22222235666766643
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCCC--------CCCHHHHHHHHHHHHHcCcc----cEEecCCCcHHHHHHHhhc
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGKI----KYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvsn~~~~~l~~~~~~ 177 (234)
.-......|+.-|++.|-+ -||..++ ...+..+++.++++++.|.. -.+=+-+.+.+++..+++.
T Consensus 99 ~L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 99 LLARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred hHHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 2233555566666655443 2333332 12356788888888888863 2444455555555555443
No 269
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.42 E-value=4.1e+02 Score=23.33 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred EEEecCCCC-----------CCHHHHHHHHHHHHHcCccc----EEecCCCcH-----HHHHHHhhcCCeeEEeecCCCC
Q 026727 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGKIK----YIGLSEASA-----DTIRRAHAVHPITAVQMEYSLW 190 (234)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir----~iGvsn~~~-----~~l~~~~~~~~~~~~q~~~n~~ 190 (234)
+-||.|+.+ .+++++++++.++.++-.-+ ++=+.+.+- +.+.++++..+..++-++||..
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Q ss_pred C-----CCch--hcHHHHHHHCCe-EEEeecccC
Q 026727 191 T-----REIE--DDIIPLCRFLHI-FLPYNPSFC 216 (234)
Q Consensus 191 ~-----~~~~--~~l~~~~~~~gi-v~a~spl~~ 216 (234)
. +..+ ..+.+..+++|| +......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 270
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=28.38 E-value=1.3e+02 Score=23.45 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCcc----CeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc
Q 026727 112 VRKCCEASLKRLDVDYI----DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~i----Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~ 177 (234)
.++.++..++++|.+.- +.+.-.+ .....+.++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 34556667777775411 1111111 11223456788899999887 45556788777766665554
No 271
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.24 E-value=73 Score=22.88 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC-----CcHHHHHHHhhcCCeeEEe
Q 026727 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-----ASADTIRRAHAVHPITAVQ 184 (234)
Q Consensus 110 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn-----~~~~~l~~~~~~~~~~~~q 184 (234)
-.+-..+-++++++|. ..+.++..++.... .....-..-.++-.. -+.+.+.++......+.+-
T Consensus 11 Geia~r~~ra~r~~Gi---~tv~v~s~~d~~s~--------~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~ 79 (110)
T PF00289_consen 11 GEIAVRIIRALRELGI---ETVAVNSNPDTVST--------HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH 79 (110)
T ss_dssp HHHHHHHHHHHHHTTS---EEEEEEEGGGTTGH--------HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHHHHhCC---cceeccCchhcccc--------cccccccceecCcchhhhhhccHHHHhhHhhhhcCcccc
Confidence 3455667788899985 44666654433222 122234444555222 4678888887777888888
Q ss_pred ecCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 185 MEYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 185 ~~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
-.|..+.-. .++.+.|.+.|| ++.=+
T Consensus 80 pGyg~lse~--~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 80 PGYGFLSEN--AEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp STSSTTTTH--HHHHHHHHHTT-EESSS-
T ss_pred cccchhHHH--HHHHHHHHHCCCEEECcC
Confidence 888888764 789999999999 86533
No 272
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=28.22 E-value=2.4e+02 Score=22.65 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHcCCCccCeEEEe-cCCC-CCCHH----HHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCC
Q 026727 120 LKRLDVDYIDLYYQH-RVDT-SVSIE----DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh-~~~~-~~~~~----~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (234)
+..-|.++||+=--- +|.. ..+.+ .+...++.+++...=--|.+-+++++.++.+++. ...++-.-.+. ..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~~- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGF-ED- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTT-SS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccc-cc-
Confidence 345588999983221 1211 12223 3444555555411112478889999999999887 33322221221 11
Q ss_pred chhcHHHHHHHCCe-EEEeecc
Q 026727 194 IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 194 ~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+++++.++++|. ++++.--
T Consensus 105 -~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 -DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp -STTHHHHHHHHTSEEEEESES
T ss_pred -cchhhhhhhcCCCEEEEEecc
Confidence 3789999999999 8876444
No 273
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=28.01 E-value=3.2e+02 Score=24.16 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=31.2
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEee
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~s 212 (234)
.+.+.+++++.. .+..++..+.|+.-.- +..++.+.|+++|+ ++.=.
T Consensus 134 ~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~ 183 (390)
T PRK08133 134 TDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183 (390)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEEC
Confidence 357777777643 4455555566765432 23789999999999 87433
No 274
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=28.00 E-value=2.4e+02 Score=20.51 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=42.6
Q ss_pred CCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCC------ccCeEEEecCCCC-CCHHHHHHHHHHHH
Q 026727 84 RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVD------YIDLYYQHRVDTS-VSIEDTMGELKKLV 153 (234)
Q Consensus 84 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d------~iDl~~lh~~~~~-~~~~~~~~~l~~l~ 153 (234)
|=.+.|+-|++... ..+..+++.+.++++....+ -.|++++-.+... .+..++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~kA---------V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKKA---------VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCch---------hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 55788888855322 34888999999999887542 4789999887643 45666666666654
No 275
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=27.82 E-value=1.1e+02 Score=27.66 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCcccCcceecccccCC-CCCCCCCHH----HHHHHHHHHHHcCCC--EEeCCcCcC
Q 026727 17 QGLEVSRLGFGCGGLSG-IYNKPLSHE----VGCSIIKETFNRGIT--LFDTSDVYG 66 (234)
Q Consensus 17 ~g~~vs~lglG~~~~~~-~~~~~~~~~----~~~~~l~~A~~~Gin--~~DtA~~Yg 66 (234)
.|+...++.||.-.+|. .|..- +.+ .+.+++..-+++|++ |+||+-.-.
T Consensus 78 ~gf~~~~iiLGGDHLGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 133 (426)
T PRK15458 78 LNFPQEALILGGDHLGPNRWQNL-PAAQAMANADDLIKSYVAAGFKKIHLDCSMSCA 133 (426)
T ss_pred cCCChhhEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCCC
Confidence 35666689999988875 36543 333 377889999999998 889987654
No 276
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=27.81 E-value=3.5e+02 Score=23.75 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=31.6
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeeccc
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPSF 215 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl~ 215 (234)
.+++.++++++. .+..++....|+.-.- +..++.+.|+++|+ ++.=+..+
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 467777777653 3455555566654432 23788899999999 77554443
No 277
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=27.61 E-value=4.8e+02 Score=23.90 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHH----HHHcC-CCccCeEEEecCCCCCCHHHHHHHHHHHHHc-CcccEEecCCCcHHHHHHHhhcC--
Q 026727 107 GSPEYVRKCCEAS----LKRLD-VDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKIKYIGLSEASADTIRRAHAVH-- 178 (234)
Q Consensus 107 ~~~~~i~~~~~~s----L~~Lg-~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvsn~~~~~l~~~~~~~-- 178 (234)
.+.+.+.+.++.- ..+-| .=..|++-|+.... +.+.....++.+++. +.. +.+.+++++.++++++..
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~dvP--LSIDT~dpevleaAleagad 177 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETTDLP--LILCSEDPAVLKAALEVVAD 177 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhcCCC--EEEeCCCHHHHHHHHHhcCC
Confidence 3455666555544 12334 22477888887644 344556666666653 443 777889999999888763
Q ss_pred -CeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 179 -PITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 179 -~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
.+.++-+ +.+.-+.+.+.|+++|. ++..++
T Consensus 178 ~~plI~Sa-----t~dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 178 RKPLLYAA-----TKENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred CCceEEec-----CcchHHHHHHHHHHcCCcEEEEch
Confidence 2333222 11212567777888888 776554
No 278
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=27.60 E-value=3.4e+02 Score=22.08 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHH
Q 026727 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (234)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 120 (234)
.....+++..|.+.|+..|=.+++...-..... ....++ ++-|-+-+-... ..++.+...+
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~~-----~i~Il~GiEi~~---------~~~~~~~~~~---- 75 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDLL-----GFEIFRGVEIVA---------SNPSKLRGLV---- 75 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHhc-----CCcEEeeEEEec---------CCHHHHHHHH----
Confidence 456789999999999998777666431000111 111221 233322221111 2244433333
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-------cHHHHHHHhhcCCeeEEeecCCCCCCC
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-------SADTIRRAHAVHPITAVQMEYSLWTRE 193 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~-------~~~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (234)
++. .+.+|++.+| +.. +++. ..+.+.+.|--||-... ....++.+.+. .. ++.+.++.+...
T Consensus 76 ~~~-~~~~d~v~v~-~~~----~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~-gv-~lEIn~s~~~~~ 144 (237)
T PRK00912 76 GKF-RKKVDVLAVH-GGD----EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARN-NV-AIEFNLRDILKS 144 (237)
T ss_pred Hhc-cCcccEEEEe-CCC----HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHC-Ce-EEEEEchHhhhh
Confidence 332 2357888899 222 1222 35777888888876532 22233333333 22 334444433111
Q ss_pred ----------chhcHHHHHHHCCe-EE
Q 026727 194 ----------IEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 194 ----------~~~~l~~~~~~~gi-v~ 209 (234)
+...++..|++.|+ ++
T Consensus 145 ~~~~r~~~~~~~~~~~~~~~~~g~pii 171 (237)
T PRK00912 145 RGGRRARTLSNFRDNLALARKYDFPLV 171 (237)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 11579999999998 65
No 279
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.53 E-value=76 Score=17.24 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCC
Q 026727 42 EVGCSIIKETFNRGIT 57 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin 57 (234)
++..+++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5678899999999986
No 280
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.41 E-value=3.6e+02 Score=22.38 Aligned_cols=85 Identities=11% Similarity=-0.023 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHH
Q 026727 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (234)
....+-++.|-+.|++.++.++..- .-+++..-++++...+..+.+-+-++...+. .....+++...+.+++.|+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~--~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~---~~~~~~~~~~i~~~~~~Le 145 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSM--EISLEERCNLIERAKDNGFMVLSEVGKKSPE---KDSELTPDDRIKLINKDLE 145 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCcc--CCCHHHHHHHHHHHHhCCCeEeccccccCCc---ccccCCHHHHHHHHHHHHH
Confidence 3445556677788888888877765 3456666667766666677777766654421 1113556666666655553
Q ss_pred HcCCCccCeEEEec
Q 026727 122 RLDVDYIDLYYQHR 135 (234)
Q Consensus 122 ~Lg~d~iDl~~lh~ 135 (234)
. | .|.+++..
T Consensus 146 A-G---A~~ViiEa 155 (237)
T TIGR03849 146 A-G---ADYVIIEG 155 (237)
T ss_pred C-C---CcEEEEee
Confidence 2 3 45566665
No 281
>PLN02389 biotin synthase
Probab=27.41 E-value=4.4e+02 Score=23.42 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCc-CCCC--hhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVY-GVDH--DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y-g~~g--~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
.+.++..+..+.+.+.|++.|--.... +..+ ..-+.+-+.++..+...+.|....+. .+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E----- 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKE----- 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHH-----
Confidence 478889999999999999987532111 1101 12234555565543334445433332 2222
Q ss_pred HHHHHHHcCCCccCeEEEec-C------CCCCCHHHHHHHHHHHHHcCc
Q 026727 116 CEASLKRLDVDYIDLYYQHR-V------DTSVSIEDTMGELKKLVEEGK 157 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 157 (234)
.-+.|+.-|+|++-+- +.. + -.....++.++.++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 3334445576654331 111 0 012356788999999999984
No 282
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=27.34 E-value=1.2e+02 Score=27.37 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=36.1
Q ss_pred CCcccCcceecccccCC-CCCCCCCHH----HHHHHHHHHHHcCCC--EEeCCcCcC
Q 026727 17 QGLEVSRLGFGCGGLSG-IYNKPLSHE----VGCSIIKETFNRGIT--LFDTSDVYG 66 (234)
Q Consensus 17 ~g~~vs~lglG~~~~~~-~~~~~~~~~----~~~~~l~~A~~~Gin--~~DtA~~Yg 66 (234)
.|+...++.||.-.+|. .|..- +.+ .+.+++..-+++|++ |+||+-...
T Consensus 74 ~gf~~~~iiLggDHlGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 129 (420)
T TIGR02810 74 IGFPRDRLILGGDHLGPNPWQHL-PADEAMAKAAALVDAYVEAGFTKIHLDASMGCA 129 (420)
T ss_pred cCCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCcc
Confidence 35666689999988876 36542 333 377889999999999 889886643
No 283
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=27.21 E-value=2.3e+02 Score=22.36 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCCccCeEEEecCCC--CCCHHHHHHHHHHHHHcCcccEEecCCCcH--HHHHHHhhcCCeeEEee
Q 026727 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDT--SVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQM 185 (234)
Q Consensus 110 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~--~~l~~~~~~~~~~~~q~ 185 (234)
......+.+.+++.+.. .+-+.+.-.+. ........+.++.|++.|- .+.+.++.. ..+..+ ...+|+.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~-~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l-~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLP-PQRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYL-KRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCC-HHHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHH-HhCCCCeEEE
Confidence 34556677777776654 23344433321 1233445588999999996 356666543 223333 2245666666
Q ss_pred cCCCCCC--------CchhcHHHHHHHCCe-EEEeec
Q 026727 186 EYSLWTR--------EIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 186 ~~n~~~~--------~~~~~l~~~~~~~gi-v~a~sp 213 (234)
..++... .....++..|+..|+ +++-+.
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV 211 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 5444322 112677899999999 887543
No 284
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=27.01 E-value=5.8e+02 Score=24.63 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCcHHHHHHHhhcCCeeEEeec
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~ 186 (234)
.+.+++-++....+-....--+|+|+..+... .++.++|.+..++ +.++.|.+++.....+..+.. .+.++.
T Consensus 101 VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S----RC~~~~ 174 (647)
T PRK07994 101 VEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS----RCLQFH 174 (647)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--HHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh----hheEee
Confidence 45565544443322112345688888765432 4678899999998 899999998865433333332 367777
Q ss_pred CCCCCCCch-hcHHHHHHHCCe
Q 026727 187 YSLWTREIE-DDIIPLCRFLHI 207 (234)
Q Consensus 187 ~n~~~~~~~-~~l~~~~~~~gi 207 (234)
|..+....- ..+...|++.||
T Consensus 175 f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 175 LKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC
Confidence 777765321 334444555566
No 285
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=26.84 E-value=2.5e+02 Score=25.06 Aligned_cols=76 Identities=11% Similarity=0.003 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc-CCeeEEeecCCCCCCCch-hcHHHHHHHCC-e-EEEeecccCC
Q 026727 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRFLH-I-FLPYNPSFCL 217 (234)
Q Consensus 142 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g-i-v~a~spl~~G 217 (234)
...+.+.++++....-|...=+...+.+.++++++. .+..++..+-|+...-.. ..+.+.|+++| + ++.=+.++++
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 345677777765555555444444577888887764 456777778888764333 88999999999 9 8876666554
No 286
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.82 E-value=87 Score=27.07 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred CcHHHHHHHhhc---CCeeEEeecCCC-------------------------------------CCCCch-hcHHHHHHH
Q 026727 166 ASADTIRRAHAV---HPITAVQMEYSL-------------------------------------WTREIE-DDIIPLCRF 204 (234)
Q Consensus 166 ~~~~~l~~~~~~---~~~~~~q~~~n~-------------------------------------~~~~~~-~~l~~~~~~ 204 (234)
++.+.|.++++. .++.+.|..++- +.+..+ .+++++|++
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~ 93 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD 93 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Q ss_pred CCe-EEE
Q 026727 205 LHI-FLP 210 (234)
Q Consensus 205 ~gi-v~a 210 (234)
+|| ||.
T Consensus 94 rgI~vIP 100 (326)
T cd06564 94 RGVNIIP 100 (326)
T ss_pred cCCeEec
No 287
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=26.75 E-value=2.1e+02 Score=25.73 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecccC
Q 026727 145 TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSFC 216 (234)
Q Consensus 145 ~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~~ 216 (234)
.-+.+..|.+.|.--..|+.+-+-...+.+....-..+.+-+|++.......+..++.++.++ +.+--|++.
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~ 351 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAA 351 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCC
Confidence 457778889999999999998664444444443445567778999887655888999999999 998888843
No 288
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=26.51 E-value=2.7e+02 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHH----cCC----------CccCeEEEecC--CCCCCHHHHHHHHHHHHH
Q 026727 108 SPEYVRKCCEASLKR----LDV----------DYIDLYYQHRV--DTSVSIEDTMGELKKLVE 154 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~----Lg~----------d~iDl~~lh~~--~~~~~~~~~~~~l~~l~~ 154 (234)
.+..+++.+.++.+. |.. .++|+.++..+ ....+.+++-+.|..|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 477777777777766 332 24689999877 333456666666666553
No 289
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=26.50 E-value=3.3e+02 Score=25.95 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEE---Ee--cCCCCCCHHHHHHHHHHHHHcCc-cc---------EEecCCCcHHHH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYY---QH--RVDTSVSIEDTMGELKKLVEEGK-IK---------YIGLSEASADTI 171 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~---lh--~~~~~~~~~~~~~~l~~l~~~G~-ir---------~iGvsn~~~~~l 171 (234)
++.+.+.. +-..|.++|.+.|+++= ++ .+-.. ++-|+.|+.+++... ++ .+|-+++.-+.+
T Consensus 24 ~~~~d~l~-ia~~ld~~G~~siE~~GGatf~~~~~~~~---e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 24 LRLDDMLP-IAAKLDKVGYWSLESWGGATFDACIRFLG---EDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEecCCcchhhhccccC---CCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHH
Confidence 44444443 66667788988888830 00 01111 123666666665432 33 267777665544
Q ss_pred HHHhhc---CCeeEEeecCCCCCCCchhcHHHHHHHCCe-E
Q 026727 172 RRAHAV---HPITAVQMEYSLWTREIEDDIIPLCRFLHI-F 208 (234)
Q Consensus 172 ~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v 208 (234)
+..++. ..++++.+-..+-+.+.-...+++++++|. +
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 333322 345555553333222223678888998888 6
No 290
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=26.45 E-value=3e+02 Score=24.58 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCH-HHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecC
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI-EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEY 187 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~ 187 (234)
.++|++.+++-.++-++|.+=+++-.+-+....+ ...=+.++.|.+.=...+--||--+.-.+..+++-.++ ++-.+-
T Consensus 206 le~Ir~Dir~Fke~~~ldkViVLWTANTERy~~V~~GlNdT~enl~~si~~~~~EisPStifA~AsilEg~~y-iNGSPQ 284 (512)
T KOG0693|consen 206 LEQIRKDIREFKEENKLDKVIVLWTANTERYSNVIPGLNDTAENLLESIEKDESEISPSTIFAIASILEGCPY-INGSPQ 284 (512)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCcceeeccccccchHHHHHHHHHhcCccccChHHHHHHHHHHcCCCc-ccCCCc
Confidence 3566666777666666655444333332222111 11222333333332222333444333334444554443 111111
Q ss_pred CCCCCCchhcHHHHHHHCCeEEEeecccCCc
Q 026727 188 SLWTREIEDDIIPLCRFLHIFLPYNPSFCLQ 218 (234)
Q Consensus 188 n~~~~~~~~~l~~~~~~~giv~a~spl~~G~ 218 (234)
|-+. +++++.|.+++++++---|-+|+
T Consensus 285 NTfV----PGlielA~~~~vfigGDDfKSGQ 311 (512)
T KOG0693|consen 285 NTFV----PGLIELAERHNVFIGGDDFKSGQ 311 (512)
T ss_pred cccc----hhHHHHHHHhCceeccccccccc
Confidence 2221 68999999999977777776776
No 291
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.39 E-value=2.1e+02 Score=19.28 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC-cccEEecCCC-cHHHHHHHhhcCCeeEE
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEA-SADTIRRAHAVHPITAV 183 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~-~~~~l~~~~~~~~~~~~ 183 (234)
..+.....|++++...-+..+. .+.++.+++.+ .++-|-+++. +.....++++..-..++
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~~---~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGDG---LELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSBH---HHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred HHhcccCceEEEEEeeeccccc---cccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 3333344999999865554444 45555555555 7778888864 45666666654333333
No 292
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.37 E-value=3.7e+02 Score=22.19 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=75.9
Q ss_pred eecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc-----CCCCc
Q 026727 12 VKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-----LPRDK 86 (234)
Q Consensus 12 ~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~-----~~R~~ 86 (234)
++|| .|+.++.|.+= -| ..++. ..--+.+.+.-+++.|.+.. |=. +|.-+-+++++ ..=.+
T Consensus 19 krLG-GGiP~GsL~lI---EG-d~~tG-KSvLsqr~~YG~L~~g~~v~-----yvs---Te~T~refi~qm~sl~ydv~~ 84 (235)
T COG2874 19 KRLG-GGIPVGSLILI---EG-DNGTG-KSVLSQRFAYGFLMNGYRVT-----YVS---TELTVREFIKQMESLSYDVSD 84 (235)
T ss_pred hhcc-CCCccCeEEEE---EC-CCCcc-HHHHHHHHHHHHHhCCceEE-----EEE---echhHHHHHHHHHhcCCCchH
Confidence 3564 36777776551 11 11111 12336677778889998865 222 67777777776 22233
Q ss_pred eEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC---C---CHHHHHHHHHHHHHcCcccE
Q 026727 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---V---SIEDTMGELKKLVEEGKIKY 160 (234)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~---~~~~~~~~l~~l~~~G~ir~ 160 (234)
.++.-++.....+- ......+...+.-++..++....-.-|++++...+.- . .+.+.+..+.++.+.||+--
T Consensus 85 ~~l~G~l~~~~~~~--~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 85 FLLSGRLLFFPVNL--EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred HHhcceeEEEEecc--cccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEE
Confidence 33333322211000 0001335555666666666666666799999876432 1 23355666777778999877
Q ss_pred EecCC
Q 026727 161 IGLSE 165 (234)
Q Consensus 161 iGvsn 165 (234)
+=+.-
T Consensus 163 lTvhp 167 (235)
T COG2874 163 LTVHP 167 (235)
T ss_pred EEeCh
Confidence 76654
No 293
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=26.34 E-value=3.2e+02 Score=21.37 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccE-EecCCCcHHHHHHHhhcCCeeEEeec
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY-IGLSEASADTIRRAHAVHPITAVQME 186 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvsn~~~~~l~~~~~~~~~~~~q~~ 186 (234)
++..+.+.++. +.+.|.|+|.+-....+-.. .....++.++++++...+.- +.+-..+.....+.+.....+.+|+.
T Consensus 9 ~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 9 DFARLGEEVKA-VEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 44555555544 34677777666432222110 11123455555554332221 55555555444433334556666664
Q ss_pred CCCCCCCchhcHHHHHHHCCe
Q 026727 187 YSLWTREIEDDIIPLCRFLHI 207 (234)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~gi 207 (234)
... .+.....++.+++.|+
T Consensus 87 ~~~--~~~~~~~~~~~~~~g~ 105 (210)
T TIGR01163 87 PEA--SEHIHRLLQLIKDLGA 105 (210)
T ss_pred cCC--chhHHHHHHHHHHcCC
Confidence 332 1112456666666666
No 294
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.30 E-value=3.9e+02 Score=24.07 Aligned_cols=50 Identities=6% Similarity=-0.098 Sum_probs=29.0
Q ss_pred CCcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeecc
Q 026727 165 EASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 165 n~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl 214 (234)
..+.+.+++++.. .+..++...-|+.-.- +..++.+.|+++|+ ++.=+.+
T Consensus 136 ~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 136 PSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 3466777776643 3344444444543322 22678888888888 7744444
No 295
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.26 E-value=2.8e+02 Score=23.22 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCC---CH----HHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCe
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV---SI----EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~---~~----~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~ 180 (234)
+.+.+.+-.+. ++++|.. ++.=-..++.+ .+ .+-++.|.+..++=-+. +-.+-|+..+++.+.+. .
T Consensus 27 s~e~~~~~a~~-~~~~g~~---~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~-~~Tev~d~~~v~~~~e~--v 99 (250)
T PRK13397 27 SYDHIRLAASS-AKKLGYN---YFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL-SVSEIMSERQLEEAYDY--L 99 (250)
T ss_pred CHHHHHHHHHH-HHHcCCC---EEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC-EEEeeCCHHHHHHHHhc--C
Confidence 45555544444 7777753 33322222221 11 13344444444332111 11133777777777662 6
Q ss_pred eEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 181 TAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
++.|+.--.... .++++++.+.|. |+--.+
T Consensus 100 dilqIgs~~~~n---~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 100 DVIQVGARNMQN---FEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred CEEEECcccccC---HHHHHHHHccCCeEEEeCC
Confidence 677774333332 567888888888 665444
No 296
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=26.18 E-value=3.8e+02 Score=24.89 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=71.1
Q ss_pred hHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCC-CCCHHHHHHHH
Q 026727 71 NEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGEL 149 (234)
Q Consensus 71 sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l 149 (234)
.-+-+|.+|+ .+.+++|+-.+...+ +....+..-+.+.+++-++. ..-+-+.--+. -.+.......+
T Consensus 340 ~~~dlG~~L~--~~~~l~VsINl~a~D---------l~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI 407 (524)
T COG4943 340 VFRDLGDLLR--QHRDLHVSINLSASD---------LASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPII 407 (524)
T ss_pred HHHHhHHHHH--hCcceEEEEeeeehh---------hcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHH
Confidence 3344666666 456788888776554 44556666777777776653 12222221111 12344577888
Q ss_pred HHHHHcCcccEE---ecCCCcHHHHHHH----hhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 150 KKLVEEGKIKYI---GLSEASADTIRRA----HAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 150 ~~l~~~G~ir~i---Gvsn~~~~~l~~~----~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
+.+++.|.--+| |..--|...+..+ ++..+-=+--+.++.......+.+++.||++|+ +++=+
T Consensus 408 ~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEG 478 (524)
T COG4943 408 LRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEG 478 (524)
T ss_pred HHHHhcCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeec
Confidence 899999975444 2211122333332 111111011223444444445789999999999 88754
No 297
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=25.97 E-value=49 Score=24.77 Aligned_cols=16 Identities=31% Similarity=0.494 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCEEeC
Q 026727 46 SIIKETFNRGITLFDT 61 (234)
Q Consensus 46 ~~l~~A~~~Gin~~Dt 61 (234)
..+..+++.|||+||-
T Consensus 30 ~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 30 WSIREQLESGIRYLDL 45 (146)
T ss_dssp HHHHHHHHTT--EEEE
T ss_pred HhHHHHHhccCceEEE
Confidence 5678999999999995
No 298
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=25.94 E-value=2e+02 Score=22.73 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=38.9
Q ss_pred HHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCcHHHHHHHhhcCCeeEEeecCC
Q 026727 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (234)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n 188 (234)
.++|.|++-+.+-.......+ .+....|.++... .+..+||- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 467766655532221111122 3445555555433 36678874 777888888877778899998543
No 299
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.94 E-value=3.9e+02 Score=22.28 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC---CcCcCCC---ChhHHHHHHHHhcCCCC-ceEEEeeeccccCCCCCcCCCCCHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDT---SDVYGVD---HDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYV 112 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt---A~~Yg~~---g~sE~~lg~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i 112 (234)
+.++..+..+.+.+.|+..||. ++..... .+..+.+.+.++...+. ++-|+.|+.... +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 5678888889999999999985 2222210 12345555555542221 577888987532 34454
Q ss_pred HHHHHHHHHHcCCCccCeEEEecCCCC-------------C--------CH-HHHHHHHHHHHHcC--cccEEecCCC-c
Q 026727 113 RKCCEASLKRLDVDYIDLYYQHRVDTS-------------V--------SI-EDTMGELKKLVEEG--KIKYIGLSEA-S 167 (234)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~--------~~-~~~~~~l~~l~~~G--~ir~iGvsn~-~ 167 (234)
.+.++ .+...|. |.+.+|+-... . .. .-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a~-~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44443 4566775 55555532100 0 00 12466666776653 5777887774 4
Q ss_pred HHHHHHHhhcCCeeEEee
Q 026727 168 ADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~ 185 (234)
.+.+.+++.. ..+.+|+
T Consensus 255 ~~da~~~l~~-GAd~V~v 271 (289)
T cd02810 255 GEDVLEMLMA-GASAVQV 271 (289)
T ss_pred HHHHHHHHHc-CccHheE
Confidence 6777777764 3666666
No 300
>PLN02321 2-isopropylmalate synthase
Probab=25.88 E-value=2e+02 Score=27.61 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCc------ccEEecCCCcHHHHHHHhhc---------
Q 026727 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK------IKYIGLSEASADTIRRAHAV--------- 177 (234)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~------ir~iGvsn~~~~~l~~~~~~--------- 177 (234)
+-.+-+.|.++|+++|++ -+|-.+..-.+.++.+.+....+. ..-.+++-.+...++.+++.
T Consensus 110 Kl~Ia~~L~~lGVd~IEv---GfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I 186 (632)
T PLN02321 110 KLDIARQLAKLGVDIIEA---GFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRPRI 186 (632)
T ss_pred HHHHHHHHHHcCCCEEEE---eCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCCEE
Q ss_pred ---CCeeEEeecCCCCCCCch-----hcHHHHHHHCCe-EEEeecccCCcccc
Q 026727 178 ---HPITAVQMEYSLWTREIE-----DDIIPLCRFLHI-FLPYNPSFCLQEAF 221 (234)
Q Consensus 178 ---~~~~~~q~~~n~~~~~~~-----~~l~~~~~~~gi-v~a~spl~~G~~~~ 221 (234)
.+.+-.+++.++-....+ .+.+++|+++|. .+.|+|-..++.++
T Consensus 187 ~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~ 239 (632)
T PLN02321 187 HTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDP 239 (632)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCH
No 301
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=25.86 E-value=1.1e+02 Score=26.24 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcc
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 158 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 158 (234)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 567788899999999986 5764322 1112334678899999999998
No 302
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=25.84 E-value=3.9e+02 Score=22.18 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc----CcccEEecCCC--cHHHHHHHhhcCCe
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE----GKIKYIGLSEA--SADTIRRAHAVHPI 180 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvsn~--~~~~l~~~~~~~~~ 180 (234)
.+++.+-.-+.+.-+.-.. .+ +.+..|-+..+-++.+++|.+|++. |---.|=.-.| +.+.++...+..--
T Consensus 86 ~d~~~~adYl~~l~~aA~P--~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~ 162 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAAP--FK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAA 162 (248)
T ss_dssp T-HHHHHHHHHHHHHHHTT--S--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHHHHHhcCC--Ce-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCc
Confidence 3566666666555555442 22 5677776666677777777666543 33223333444 46778888887778
Q ss_pred eEEeec---CCCCCCCchhcHHHHHHHCCe-EE
Q 026727 181 TAVQME---YSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 181 ~~~q~~---~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
+.+|+. ..-.+. .-+.+-||+++|+ ..
T Consensus 163 dmVQIKtPDLGgi~n--tieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 163 DMVQIKTPDLGGINN--TIEAVLYCKEHGVGAY 193 (248)
T ss_dssp SEEEE-GGGGSSTHH--HHHHHHHHHHTT-EEE
T ss_pred CEEEecCCCccchhh--HHHHHHHHHhcCCcee
Confidence 889983 222222 2578889999999 53
No 303
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=25.77 E-value=2.1e+02 Score=26.43 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred cCcceecccccCC----CCCCCCCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc---CCCCceEE
Q 026727 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---LPRDKIQL 89 (234)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~---~~R~~~~i 89 (234)
+.++.+|.-++.. ..+...+.+++.+.++.|.++|+..+-+--.||-||++.+-+-+.++. ...+.+.+
T Consensus 280 v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv 355 (488)
T PRK08207 280 VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTV 355 (488)
T ss_pred CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 4466666555432 234445788899999999999996665556788778888887777765 34444443
No 304
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=25.76 E-value=5.3e+02 Score=23.78 Aligned_cols=151 Identities=9% Similarity=0.054 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc-CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (234)
+++-....++.|.++||..|=..+.-..-...+..+. +.++ ...-++.|+-...+ ..+.+...+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~sp----------~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTSP----------VHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeCC----------cCcHHHHHHHHHH
Confidence 4566777899999999998777666654011333333 3332 21111223322211 2456666666655
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcH-----HHHHHHhhcCCeeEEeecCCCCCCC
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA-----DTIRRAHAVHPITAVQMEYSLWTRE 193 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~-----~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (234)
+..+|. |.+.|-+..-.....++.+.+..+++...+ -||+=.|+. .....+++. ..+.+..-.+.+-..
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieA-Gad~vD~ai~g~g~g 245 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEA-GADRIDTALSPFSEG 245 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHc-CCCEEEeeccccCCC
Confidence 456775 445554433333445555556666654433 477766653 222233332 334444444444322
Q ss_pred ----chhcHHHHHHHCCe
Q 026727 194 ----IEDDIIPLCRFLHI 207 (234)
Q Consensus 194 ----~~~~l~~~~~~~gi 207 (234)
+.+.++..++..|+
T Consensus 246 agN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 246 TSQPATESMYLALKEAGY 263 (468)
T ss_pred cCChhHHHHHHHHHhcCC
Confidence 12566777776655
No 305
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=25.75 E-value=1.5e+02 Score=23.35 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=26.8
Q ss_pred cCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 026727 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 164 (234)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 164 (234)
-++++++....+..-.+-+..|++++.+|++|++-+.
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 4667776544444455778999999999999976443
No 306
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.73 E-value=90 Score=27.12 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred CcHHHHHHHhhc---CCeeEEeecC------------------------------CCCCCCchhcHHHHHHHCCe-EEE
Q 026727 166 ASADTIRRAHAV---HPITAVQMEY------------------------------SLWTREIEDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 166 ~~~~~l~~~~~~---~~~~~~q~~~------------------------------n~~~~~~~~~l~~~~~~~gi-v~a 210 (234)
++.+.|.++++. .++.+.|..+ ..+.++.-.+++++|+++|| ||.
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
No 307
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=25.62 E-value=3.9e+02 Score=22.10 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=75.6
Q ss_pred HHHHHHHHhc--CCCC--ceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC--CCHHHH
Q 026727 72 EIMVGKALKQ--LPRD--KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDT 145 (234)
Q Consensus 72 E~~lg~al~~--~~R~--~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~ 145 (234)
..++.++++. ..+. .+.++..+.+.. +....+...+.+.+++.+.+.- -+.+.-.+.. .....+
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~~~---------l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~ 138 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSPVQ---------LRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTA 138 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCHHH---------hCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHH
Confidence 4556666654 1122 377777766533 3344566677788888876532 3333333222 234467
Q ss_pred HHHHHHHHHcCcccEEecCCCcHH--HHHHHhhcCCeeEEeecCCCCCC--------CchhcHHHHHHHCCe-EEEeec
Q 026727 146 MGELKKLVEEGKIKYIGLSEASAD--TIRRAHAVHPITAVQMEYSLWTR--------EIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 146 ~~~l~~l~~~G~ir~iGvsn~~~~--~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~l~~~~~~~gi-v~a~sp 213 (234)
...+.+|++.| + .|.+.+|... .+..+.+ .+|+++-+.-++... ..-..++..|++.|+ ++|-+.
T Consensus 139 ~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 139 LALLRQLRELG-V-RIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHHHHHHCC-C-eEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 88999999999 3 3666666432 2333322 566666654333321 122788999999999 988654
No 308
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.45 E-value=1.5e+02 Score=21.91 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCccCeEEEecCCCCC-CHHHHHHHHHHHHHcCcccEEec
Q 026727 114 KCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGL 163 (234)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGv 163 (234)
..+.+.|+.+....+|+++++..+.-. +..+....++.+.+.--|+-+-+
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 456666666666789999998876543 34567777777777623444444
No 309
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.43 E-value=2.4e+02 Score=20.14 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=28.5
Q ss_pred cCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 163 LSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 163 vsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
.+..+.+.++.++.. +|+++-+--.--.....+++.++++++|| +..+..
T Consensus 37 ~~~l~~e~l~~l~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 37 FEDLTAAHFEALLAL-QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cccCCHHHHHHHHhc-CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 344566677766654 34444442222111123678889999999 877653
No 310
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.40 E-value=4.3e+02 Score=22.53 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEe-cCCCC-CCHH-H---HHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCee
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTS-VSIE-D---TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPIT 181 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~-~~~~-~---~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~ 181 (234)
+.+.+.+..++.+ .-|.|.||+=--- +|... .+.+ | +...++.+++.-.+ -|.|-+++++.++++++.+--.
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4555555544443 4577888873221 24322 2222 2 45566666654223 3889999999999999875333
Q ss_pred EEeecCCCCCCCchhcHHHHHHHCCe-EEEee
Q 026727 182 AVQMEYSLWTREIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 182 ~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~s 212 (234)
+|-+ +-+. ++++++.+++.|. ++.+.
T Consensus 114 INDI--~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 INDI--RSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EEEC--CCCC---CHHHHHHHHHcCCCEEEEc
Confidence 3333 2222 2578888999999 77663
No 311
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=25.33 E-value=4.5e+02 Score=22.83 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCC-CChhHH----HHHHHHhc------CCCCce-----EEEeeeccccCC--C-
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-DHDNEI----MVGKALKQ------LPRDKI-----QLATKFGCFMLD--G- 100 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-~g~sE~----~lg~al~~------~~R~~~-----~i~tK~~~~~~~--~- 100 (234)
.++..+++-...+++|-+.+-|...+.. ++..|. ..-+..+. ..|+.+ +|+--+|+.... +
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g 130 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADG 130 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCC
Confidence 4577888889999999999998765542 111111 11111111 223333 444444443321 1
Q ss_pred ----CCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCc------H
Q 026727 101 ----VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEAS------A 168 (234)
Q Consensus 101 ----~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvsn~~------~ 168 (234)
+......+.+.+.+-.++.|+.+.-.-+|++.+...+. ..|+-.+++-+.+. .+=-+|+++-.+ .
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~---~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G 207 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPN---VAEAKAALELLQELGPSKPFWISFTIKDEGRLRSG 207 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCC---HHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCC
Confidence 12233456788999999999999877799999987654 33444444444432 222355554322 1
Q ss_pred HHHHHHh---hcCC-eeEEeecCCCCCCCchhcHHHHH-HHCCe-EEEeecccCC
Q 026727 169 DTIRRAH---AVHP-ITAVQMEYSLWTREIEDDIIPLC-RFLHI-FLPYNPSFCL 217 (234)
Q Consensus 169 ~~l~~~~---~~~~-~~~~q~~~n~~~~~~~~~l~~~~-~~~gi-v~a~spl~~G 217 (234)
+.+++++ +... +..+=+++-..... ..-+.+.. +-.++ +++| |..+.
T Consensus 208 ~t~e~~~~~~~~~~~~~~IGvNC~~~~~~-~~~~~~L~~~~~~~~llvY-PNsGe 260 (317)
T KOG1579|consen 208 ETGEEAAQLLKDGINLLGIGVNCVSPNFV-EPLLKELMAKLTKIPLLVY-PNSGE 260 (317)
T ss_pred CcHHHHHHHhccCCceEEEEeccCCchhc-cHHHHHHhhccCCCeEEEe-cCCCC
Confidence 2233332 2222 33333332222221 23344444 56678 8888 66443
No 312
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=25.30 E-value=2.6e+02 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT 61 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt 61 (234)
.++.....+..|++.|...|++
T Consensus 12 ~pENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 12 YPENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred CCcchHHHHHHHHHcCcCEEEE
Confidence 3477889999999999998873
No 313
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=25.10 E-value=2.4e+02 Score=20.43 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=28.3
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
.+.+.+..+... .+|+++-+--.--.....+++.++++++|| +..+..
T Consensus 40 l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 40 ITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 456666665543 345555553333333333678888888888 776654
No 314
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=25.09 E-value=4.7e+02 Score=22.94 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=53.7
Q ss_pred CccCeEE-EecCCC-----------CCCHHHHHHHHHHHHH-cCc---ccEEecC--CCcHHHHHHHhhc---C-----C
Q 026727 126 DYIDLYY-QHRVDT-----------SVSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTIRRAHAV---H-----P 179 (234)
Q Consensus 126 d~iDl~~-lh~~~~-----------~~~~~~~~~~l~~l~~-~G~---ir~iGvs--n~~~~~l~~~~~~---~-----~ 179 (234)
.++|+.+ +|.+++ ..+++++++++.+..+ .|. |+++=+. |.+.+.++++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 4577754 677643 2346677777766665 342 3333332 4455555555443 2 3
Q ss_pred eeEEeecCCCCCCC------c----hhcHHHHHHHCCe-EEEeecc
Q 026727 180 ITAVQMEYSLWTRE------I----EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 180 ~~~~q~~~n~~~~~------~----~~~l~~~~~~~gi-v~a~spl 214 (234)
..++-++||.+... + -..+.+..+++|+ +......
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~ 328 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQF 328 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 56888899987432 1 1567888899999 8877665
No 315
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=24.89 E-value=1.2e+02 Score=25.99 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCCccC--eEEEecCCCCCCHHHHHHHHHHHHHcCcccE
Q 026727 109 PEYVRKCCEASLKRLDVDYID--LYYQHRVDTSVSIEDTMGELKKLVEEGKIKY 160 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iD--l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 160 (234)
.+...+.+++.+++||+.+ | .++.-. .....+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~--~~~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITT--EPEYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECC--CHHHHHHHHHHHHHHHHCCCEEe
Confidence 5677888999999999853 4 333221 11235578999999999998754
No 316
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=24.89 E-value=3.8e+02 Score=21.74 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCc
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 167 (234)
.+.|++.+.+.+++-|.+.-++=++--.-. .+ .+.+..+++.| ++.+|++...
T Consensus 8 ~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~-~~----~~~i~~l~~~G-~~~fg~~~~~ 60 (229)
T TIGR00044 8 LEDIKTKIEAANTHVNRNPSKVKLLAVSKT-KP----ASAIQIAYDAG-QRAFGENYVQ 60 (229)
T ss_pred HHHHHHHHHHHHHHcCCCcCCeEEEEEECC-CC----HHHHHHHHHcC-CccccEEcHH
Confidence 456777777777777764444433332221 11 44444467788 7889988754
No 317
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=24.79 E-value=3e+02 Score=27.52 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHcCC--------------------------CccCeEEEecCCCCCCH---HHHHHHHHHHHHcCc
Q 026727 107 GSPEYVRKCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGK 157 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ 157 (234)
..+..+.+.++.+|+.++. ....++++..|....+. ..+|....++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 3455677777777776642 24577888887665554 478999999999998
Q ss_pred ccEEecCCCcHHHHHHHhhc
Q 026727 158 IKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 158 ir~iGvsn~~~~~l~~~~~~ 177 (234)
+|=+.+|+.++.+.+...
T Consensus 750 --aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTR 767 (885)
T ss_pred --EEEEEcCCHHHHHHHhhh
Confidence 888999999998887654
No 318
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=24.78 E-value=2e+02 Score=23.73 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=34.6
Q ss_pred cHHHHHHHhhcCCeeEEee----cCCCCCCCch---hcHHHHHHHCCe-EEEeecccCC
Q 026727 167 SADTIRRAHAVHPITAVQM----EYSLWTREIE---DDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q~----~~n~~~~~~~---~~l~~~~~~~gi-v~a~spl~~G 217 (234)
++.+++.+.+...+.++-+ +||.|+.+.. ..++.|++.-|- -+.+-|+..|
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~ 108 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDG 108 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCC
Confidence 4566666666655444433 5777775422 789999999999 8888899553
No 319
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=24.77 E-value=3.9e+02 Score=21.90 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+..+....+...+..++......--- |.+.+.+ +.+. ....+-.+.|.+.... ....+.+.+...+.+.
T Consensus 11 PR~Dv~p~l~~~l~~~v~i~e~G~LD---gls~~eI-~~~a-P~~ge~vLvTrL~DG~------~V~ls~~~v~~~lq~~ 79 (221)
T PF07302_consen 11 PRTDVTPELTEILGEGVEIVEAGALD---GLSREEI-AALA-PEPGEYVLVTRLRDGT------QVVLSKKKVEPRLQAC 79 (221)
T ss_pred CCchhHHHHHHHcCCCceEEEeccCC---CCCHHHH-HHhC-CCCCCceeEEEeCCCC------EEEEEHHHHHHHHHHH
Confidence 55677788888888888877654333 3355555 6666 4455677777775322 2237899999999999
Q ss_pred HHHcCCCccCeEEEecCCC------CCC---HHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc---CCeeEEeecC
Q 026727 120 LKRLDVDYIDLYYQHRVDT------SVS---IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HPITAVQMEY 187 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~------~~~---~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~---~~~~~~q~~~ 187 (234)
+++|..+-.|+.++-+-.. ..+ ...++..+-...-.| +.+||-.-.++|+....+. ....+.-.-.
T Consensus 80 i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 80 IAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999777678887754321 111 234555555555555 7899988888888755443 1223344446
Q ss_pred CCCCCCchhcHHHHHH---HCCe-EEEeeccc
Q 026727 188 SLWTREIEDDIIPLCR---FLHI-FLPYNPSF 215 (234)
Q Consensus 188 n~~~~~~~~~l~~~~~---~~gi-v~a~spl~ 215 (234)
|++..+ ..++.+.++ +.|. ++..--++
T Consensus 158 sPy~~~-~~~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 158 SPYEGD-EEELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred CCCCCC-HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 777543 245555554 5577 77665553
No 320
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.74 E-value=1.4e+02 Score=26.64 Aligned_cols=145 Identities=13% Similarity=0.062 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHH---HHHHHhc-----CCCCceEEEeeeccccCCCCCcCCCCCHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIM---VGKALKQ-----LPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~---lg~al~~-----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~ 111 (234)
...+..+.|+.++++|+-= ..|+ +++. +-.|.++ .+.+.++++.-
T Consensus 39 ~pp~i~~Al~~rvdhGvfG----Y~~~----~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~------------------- 91 (388)
T COG1168 39 TPPEIIEALRERVDHGVFG----YPYG----SDELYAAIAHWFKQRHQWEIKPEWIVFVPG------------------- 91 (388)
T ss_pred CCHHHHHHHHHHHhcCCCC----CCCC----CHHHHHHHHHHHHHhcCCCCCcceEEEcCc-------------------
Confidence 4577889999999999742 2244 3433 3344443 22233332222
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEec----CCC--cHHHHHHHhhcC--CeeEE
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL----SEA--SADTIRRAHAVH--PITAV 183 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv----sn~--~~~~l~~~~~~~--~~~~~ 183 (234)
+...+...++.| |+-=|-+.++.|-. .++..+... -.. ++-..-+ .-| +-+++++++... +.-+.
T Consensus 92 VVpgi~~~I~~~-T~~gd~Vvi~tPvY-~PF~~~i~~----n~R-~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iL 164 (388)
T COG1168 92 VVPGISLAIRAL-TKPGDGVVIQTPVY-PPFYNAIKL----NGR-KVIENPLVEDDGRYEIDFDALEKAFVDERVKLFIL 164 (388)
T ss_pred chHhHHHHHHHh-CcCCCeeEecCCCc-hHHHHHHhh----cCc-EEEeccccccCCcEEecHHHHHHHHhcCCccEEEE
Confidence 333455555666 34558888888743 233222211 001 1111111 112 556677665543 33333
Q ss_pred eecCCCCCC----CchhcHHHHHHHCCe-EEE---eecc-cCCc
Q 026727 184 QMEYSLWTR----EIEDDIIPLCRFLHI-FLP---YNPS-FCLQ 218 (234)
Q Consensus 184 q~~~n~~~~----~~~~~l~~~~~~~gi-v~a---~spl-~~G~ 218 (234)
-.+.|+.-+ +....+.+.|++||| ||+ +++| .+|.
T Consensus 165 CnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~ 208 (388)
T COG1168 165 CNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH 208 (388)
T ss_pred eCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC
Confidence 345555443 222788999999999 885 6676 6664
No 321
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.65 E-value=1.9e+02 Score=25.36 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHh
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALK 80 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~ 80 (234)
+.+++.+.++.+.++|+..+-+--.||-||++.+.+.+.++
T Consensus 133 ~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~ 173 (374)
T PRK05799 133 TFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLE 173 (374)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHH
Confidence 45555555666666665422222245544555555444443
No 322
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=24.63 E-value=4.4e+02 Score=23.79 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCCch
Q 026727 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (234)
+.+..++|.-.-.+++.+|.-..- =++||+|+++|.+. ||=+.+..++...+-- . ++.. .
T Consensus 200 V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME~Li~~G~~~--~VlDlTttEl~d~l~G-G---------v~sa--g 259 (403)
T PF06792_consen 200 VDAIRERLEEEGYEVLVFHATGTG------GRAMERLIREGQFD--GVLDLTTTELADELFG-G---------VLSA--G 259 (403)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCc------hHHHHHHHHcCCcE--EEEECcHHHHHHHHhC-C---------CCCC--C
Confidence 444444444333688999976432 36899999999985 5555554444332211 1 1111 2
Q ss_pred hcHHHHHHHCCe--EEEeecc---cCCccccccCCceeeeee
Q 026727 196 DDIIPLCRFLHI--FLPYNPS---FCLQEAFIFNSWQLLLFY 232 (234)
Q Consensus 196 ~~l~~~~~~~gi--v~a~spl---~~G~~~~~~~~~r~~~~~ 232 (234)
++.++.+-+.|| |++-+.| .-|..+-+...|+...||
T Consensus 260 p~Rl~AA~~~GIP~Vvs~GalDmVnFg~~~tvPe~~~~R~~~ 301 (403)
T PF06792_consen 260 PDRLEAAARAGIPQVVSPGALDMVNFGPPDTVPEKFKGRKLY 301 (403)
T ss_pred chHHHHHHHcCCCEEEecCccceeccCCcccCCHhhcCCcce
Confidence 456777777777 5554444 222223344445554444
No 323
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=24.55 E-value=5.9e+02 Score=23.83 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCC-cCcC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTS-DVYG 66 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg 66 (234)
.+.++..++.+...+.||..|+.. +...
T Consensus 20 ~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s 48 (526)
T TIGR00977 20 FSLEDKIRIAERLDDLGIHYIEGGWPGAN 48 (526)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 377888899999999999999987 4444
No 324
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=24.44 E-value=4.7e+02 Score=22.71 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHH
Q 026727 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (234)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (234)
...+++++.+-+.|| .+|.|.. +++.+-.++. . -+.-+|+|...+..- .+..+.--.++++...+
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~------s~kt~~Dvl~-~-s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~ 213 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL------SDKTFWDVLD-L-SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAE 213 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc------CCccHHHHHh-c-cCCceEEecCCchhc------cCCCCCCCHHHHHHHHh
Confidence 457899999999999 5888743 4555555665 2 344566666554331 11223334445555555
Q ss_pred HcCCCccCeEEEecC-----CCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 122 RLDVDYIDLYYQHRV-----DTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 122 ~Lg~d~iDl~~lh~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
+=|+ |.+-++-.. ....++++..+.++.+++.+=+.+||+.+
T Consensus 214 ~gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 214 TGGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred cCCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 5442 444333221 23557899999999999998899999976
No 325
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.40 E-value=3e+02 Score=20.46 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCC
Q 026727 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (234)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~ 166 (234)
.-+...|+.-|.+-+++ ....+.+++.++ ..+-.+..||+|..
T Consensus 21 ~iv~~~lr~~G~eVi~L------G~~vp~e~i~~~----a~~~~~d~V~lS~~ 63 (137)
T PRK02261 21 KILDRALTEAGFEVINL------GVMTSQEEFIDA----AIETDADAILVSSL 63 (137)
T ss_pred HHHHHHHHHCCCEEEEC------CCCCCHHHHHHH----HHHcCCCEEEEcCc
Confidence 34556667777443333 334555555544 34457778888863
No 326
>PRK07671 cystathionine beta-lyase; Provisional
Probab=24.38 E-value=4e+02 Score=23.41 Aligned_cols=49 Identities=8% Similarity=-0.034 Sum_probs=30.6
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeecc
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+.+.+++++.. .+..++..+.|+.-.- ...++.+.|+++|+ ++.=..+
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~ 173 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF 173 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 356777776642 4455666666664332 23778888999998 7754444
No 327
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.24 E-value=5e+02 Score=22.88 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=53.6
Q ss_pred eEEEecCCC-----------CCCHHHHHHHHHHHHHcC--cc--cEEecC--CCcHHHHHHH---hhcCCeeEEeecCCC
Q 026727 130 LYYQHRVDT-----------SVSIEDTMGELKKLVEEG--KI--KYIGLS--EASADTIRRA---HAVHPITAVQMEYSL 189 (234)
Q Consensus 130 l~~lh~~~~-----------~~~~~~~~~~l~~l~~~G--~i--r~iGvs--n~~~~~l~~~---~~~~~~~~~q~~~n~ 189 (234)
.+-||.|++ ..+++++++++++..++. +| -++=+. |-+.+++.++ +...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 467887743 245788889988865442 22 233332 4555555554 444567888899997
Q ss_pred CCC-----Cch---hcHHHHHHHCCe-EEEeecc
Q 026727 190 WTR-----EIE---DDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 190 ~~~-----~~~---~~l~~~~~~~gi-v~a~spl 214 (234)
... ... ..+.+..+++|+ +......
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~ 323 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASR 323 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 432 111 567777889999 8877665
No 328
>PRK07094 biotin synthase; Provisional
Probab=24.18 E-value=4.5e+02 Score=22.37 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCC----cCcCCCChhHHHHHHHHhcCCC-CceEEEeeeccccCCCCCcCCCCCHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTS----DVYGVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA----~~Yg~~g~sE~~lg~al~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (234)
+.++..+.++.+.+.|++.|--. +.|. .+.+-+.++...+ .++.+..-.+. .+.+.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~-----~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~--- 131 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYT-----DEKIADIIKEIKKELDVAITLSLGE-----------RSYEE--- 131 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCC-----HHHHHHHHHHHHccCCceEEEecCC-----------CCHHH---
Confidence 67888888899999999877432 2222 2334444443222 24433322211 22322
Q ss_pred HHHHHHHHcCCCccCeEEEecC--------CCCCCHHHHHHHHHHHHHcCccc----EEecCCCcHHHHHHHhh
Q 026727 115 CCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEEGKIK----YIGLSEASADTIRRAHA 176 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~--------~~~~~~~~~~~~l~~l~~~G~ir----~iGvsn~~~~~l~~~~~ 176 (234)
-+.|+..|.+.+-+ -+... ......++.+++++.+++.|.-- -+|+...+.+.+.+.++
T Consensus 132 --l~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 132 --YKAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred --HHHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 23456667654331 11111 12345678899999999998522 25665666666655433
No 329
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.14 E-value=4.3e+02 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCc
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSD 63 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~ 63 (234)
+.++..++++...+.||..|+...
T Consensus 18 s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 18 PTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 678888999999999999999873
No 330
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=24.12 E-value=4.1e+02 Score=21.93 Aligned_cols=85 Identities=14% Similarity=0.020 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCCh-hHHHHHHHHhcCCCC-ceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHD-NEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~-sE~~lg~al~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
+.++..+.+..+...+.+.++---.|=. .. +...+..++.+...+ .++++-+..... + .+..+.+.-.+.++
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~-~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EG----G-~~~~~~~~~i~ll~ 85 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLE-SNVEVLEVAKALREKDPDKPLIFTFRTVKEG----G-EFPGSEEEYIELLK 85 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhc-ccchHHHHHHHHHHhccCCceEEEEeehhhc----C-CCCCCHHHHHHHHH
Confidence 5678888889999999888776544442 11 222233344333333 466666632211 1 11245666666677
Q ss_pred HHHHHcCCCccCe
Q 026727 118 ASLKRLDVDYIDL 130 (234)
Q Consensus 118 ~sL~~Lg~d~iDl 130 (234)
...+.-+.+|+|+
T Consensus 86 ~la~~~~~d~iDi 98 (231)
T COG0710 86 KLAELNGPDYIDI 98 (231)
T ss_pred HHHhhcCCCEEEE
Confidence 7777667899998
No 331
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=24.09 E-value=5.3e+02 Score=23.20 Aligned_cols=83 Identities=11% Similarity=-0.090 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC---C-cHHHHHHHhhcCCeeE
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---A-SADTIRRAHAVHPITA 182 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn---~-~~~~l~~~~~~~~~~~ 182 (234)
.+++.+.+.+++.+.-... ..+-+.+-...+......+.+.++.+++.|.--+|+.+| + +.+.++++.+. .++.
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld~ 131 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVRE 131 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCCE
Confidence 4577777777777765432 245566665544344456777777777777666666444 2 45556666552 2344
Q ss_pred EeecCCCCC
Q 026727 183 VQMEYSLWT 191 (234)
Q Consensus 183 ~q~~~n~~~ 191 (234)
+++..+..+
T Consensus 132 v~iSvka~d 140 (404)
T TIGR03278 132 VSFTVFATD 140 (404)
T ss_pred EEEecccCC
Confidence 455444443
No 332
>TIGR03586 PseI pseudaminic acid synthase.
Probab=24.03 E-value=4.9e+02 Score=22.71 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHH-----------------Hhc--CCCCceEEEeeeccccCC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKA-----------------LKQ--LPRDKIQLATKFGCFMLD 99 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~a-----------------l~~--~~R~~~~i~tK~~~~~~~ 99 (234)
.+.+...++.+++-+.|+.++=|...-. +-..+-+. |+. .....|+++|-.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~----svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~------ 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDET----AVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI------ 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHH----HHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC------
Confidence 3567777888999999999997753332 22222111 011 122334444433
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCC-CCHHH-HHHHHHHHHHcCcccEEecCCCcHHH
Q 026727 100 GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIED-TMGELKKLVEEGKIKYIGLSEASADT 170 (234)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvsn~~~~~ 170 (234)
.+.+.+..+++...+ -|. -++.++|+.... .+.++ -+.++..|++.=. .-||+|+|+...
T Consensus 144 -------~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~ 205 (327)
T TIGR03586 144 -------ATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGI 205 (327)
T ss_pred -------CCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCch
Confidence 247788888877653 342 479999986442 22222 3566666665433 359999998654
No 333
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.97 E-value=3.5e+02 Score=21.93 Aligned_cols=129 Identities=19% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHH-----HHHHH
Q 026727 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV-----RKCCE 117 (234)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i-----~~~~~ 117 (234)
+..+.++.|++.|+.-+-+.+.|.. ...+.+. ..+-++-+..++.... ...+.- ...++
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~-~~~~~~~~vi~fp~g~---------~~~~~k~~~~~~~~ve 83 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLA-GSGVKVGLVIGFPFGT---------STTEPKGYDQIVAEVE 83 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHST-TSTSEEEEEESTTTSS---------STHHHHTCEEEHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhh-ccccccceEEEeCCCC---------CccccccccchHHHHH
Confidence 7899999999999999988777762 2233333 2222455555543322 223333 45666
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc---CcccEEecCCCc---------HHHHHHHhhc---CCeeE
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE---GKIKYIGLSEAS---------ADTIRRAHAV---HPITA 182 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvsn~~---------~~~l~~~~~~---~~~~~ 182 (234)
+. .++|.|-||+++-..+..+.......+.+.+++++ --+..|--+... ++.+..+.+. ...++
T Consensus 84 ~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 84 EA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HH-HHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 66 57899999998887443333344555555555544 122223222211 2234444332 56777
Q ss_pred EeecCC
Q 026727 183 VQMEYS 188 (234)
Q Consensus 183 ~q~~~n 188 (234)
+...+.
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 777666
No 334
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=23.91 E-value=1.3e+02 Score=21.41 Aligned_cols=48 Identities=4% Similarity=-0.040 Sum_probs=29.4
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
.+.+.+..+... .+|+++-+--.--.....+++.++++++|| +..+..
T Consensus 39 l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 39 LTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp EETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred CCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 456777777765 356666553333333334789999999999 887754
No 335
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.66 E-value=5.4e+02 Score=23.13 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+.++..+....+++.|++.|=.--.-.. ....+.+ +++++.-.+++.|..=... .++++...+ .
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~d~~~v-~avRe~vG~~~~L~vDaN~----------~w~~~~A~~----~ 259 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADL-EDDIRRC-RLAREVIGPDNKLMIDANQ----------RWDVPEAIE----W 259 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCH-HHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHHHH----H
Confidence 4455666677778899997653211111 1112222 3444422223333222211 134443322 2
Q ss_pred HHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC---ccc-EEecCCCcHHHHHHHhhcCCeeEEeecCCCCCC-Cc
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG---KIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EI 194 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G---~ir-~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 194 (234)
+++|. -.++.++..|-+.. -++.+.+|++.. -+. +.|=|-++...+.++++....+++|....-.-. ..
T Consensus 260 ~~~L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~ 333 (415)
T cd03324 260 VKQLA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNE 333 (415)
T ss_pred HHHhh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 33332 24667777765433 355666666553 232 334455788888999887788999986655432 11
Q ss_pred hhcHHHHHHHCCe-EEEee
Q 026727 195 EDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 195 ~~~l~~~~~~~gi-v~a~s 212 (234)
..++...|+.+|+ +..++
T Consensus 334 ~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 334 NLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHcCCeEEEcC
Confidence 2789999999999 87763
No 336
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=23.62 E-value=5.4e+02 Score=23.13 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCC-EEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeecccc-CCCCCcCCCCCHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGIT-LFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFM-LDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin-~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~-~~~~~~~~~~~~~~i~~~~~ 117 (234)
+-++-.+-+..|.+.|.. ..|-+.. | .-..+-+++=+ -..+-|.|=--+.. ........+.+.+.+...++
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLStG-g----dl~eiR~~ii~--~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~ 148 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLSTG-G----DLHEIREWIIR--NSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVE 148 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecccC-C----CHHHHHHHHHh--cCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHH
Confidence 445555667889999964 5565432 4 23334444421 11122221100000 00011133467788888777
Q ss_pred HHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
+..+ +-+|.+.+|.- -.++.++.+++.|++ .|+.+
T Consensus 149 ~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~--~giVS 183 (432)
T COG0422 149 KQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRV--TGIVS 183 (432)
T ss_pred HHHH----hCCcEEEeehh-------hhHHHHHHHHhcCce--eeeec
Confidence 7765 34788999963 247888888988887 45543
No 337
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=23.57 E-value=6e+02 Score=23.57 Aligned_cols=148 Identities=9% Similarity=0.139 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCC-CChhHHHHHHHHhcC--CCCceEEEeeeccccCCCCCcCCCCCHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-DHDNEIMVGKALKQL--PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~-~g~sE~~lg~al~~~--~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (234)
+.-+...+....-+.|+ -|-...|.. +.-.-.++.+++.+. .+-.|+|.--.+ ..+...+.+.-..+.+++
T Consensus 210 ~~~e~~~L~~~~~~~~l--~~rv~i~pGADEvg~~LlaRa~n~~~~~~P~v~v~Ys~~----~g~~~vp~YEd~pl~esv 283 (497)
T PF13552_consen 210 TAMEQRELEAYIEELGL--SDRVMIYPGADEVGLLLLARAYNEYKGYKPRVYVRYSSG----NGADTVPPYEDRPLGESV 283 (497)
T ss_pred CHHHHHHHHHHHHhcCC--CCceeeeCChhHHHHHHHHHHHHHhcCCCceEEEEeCCC----CCCccCCCCCCCCHHHHH
Confidence 45667777777778886 444445541 112334567777652 223333322211 112344556667888999
Q ss_pred HHHHHHcCCCc------cCe-EEEecCCCCC---------------CHHHHHHHHHHHHHcCcccE---EecCCCcHHHH
Q 026727 117 EASLKRLDVDY------IDL-YYQHRVDTSV---------------SIEDTMGELKKLVEEGKIKY---IGLSEASADTI 171 (234)
Q Consensus 117 ~~sL~~Lg~d~------iDl-~~lh~~~~~~---------------~~~~~~~~l~~l~~~G~ir~---iGvsn~~~~~l 171 (234)
+.-+...|..- .|+ +.+|.|.... ...+....+++++++|+.-+ +..+|-.-..+
T Consensus 284 ~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaDva~~NGad~~L 363 (497)
T PF13552_consen 284 KEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIADVAYANGADNAL 363 (497)
T ss_pred HHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEEcCcCCCccHHH
Confidence 99999998643 444 5667774322 35678899999999988654 23345444455
Q ss_pred HHHhhcCCeeEEeecCCCCCCC
Q 026727 172 RRAHAVHPITAVQMEYSLWTRE 193 (234)
Q Consensus 172 ~~~~~~~~~~~~q~~~n~~~~~ 193 (234)
.+.+....+-..-.-|+-|++.
T Consensus 364 ~~~L~~~~~l~~L~aYaGWNTa 385 (497)
T PF13552_consen 364 MELLLKNGLLDKLAAYAGWNTA 385 (497)
T ss_pred HHHHHhCCchhhhheeeecCcc
Confidence 5554433333333457777765
No 338
>PRK08084 DNA replication initiation factor; Provisional
Probab=23.57 E-value=1.2e+02 Score=24.71 Aligned_cols=45 Identities=7% Similarity=0.177 Sum_probs=32.4
Q ss_pred ccCeEEEecCCCCC---C-HHHHHHHHHHHHHcCcccEEecCCCcHHHH
Q 026727 127 YIDLYYQHRVDTSV---S-IEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (234)
Q Consensus 127 ~iDl~~lh~~~~~~---~-~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l 171 (234)
..|++++...+... . -++.+..+..+++.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888887664321 1 234678888999999999999998776663
No 339
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.52 E-value=3.8e+02 Score=21.67 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCcccEEecCC-CcHHHHHHHhhcC-CeeEEeecCCCCCCCchhcHHHHHHHCCe-EE
Q 026727 145 TMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCRFLHI-FL 209 (234)
Q Consensus 145 ~~~~l~~l~~~G~ir~iGvsn-~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~ 209 (234)
..+.+++++++.-=..||..+ .+.++.+.+++.. .|.+ ++.. .+++++.|++++| ++
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv-----sP~~---~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV-----SPGL---TPPLLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE-----CCCC---CHHHHHHHHHcCCCEe
Confidence 455555555543224577766 4556666666652 3332 1211 1467777777777 65
No 340
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=23.36 E-value=3.6e+02 Score=20.95 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=46.9
Q ss_pred HHHHHHHhc-CC-CCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHH
Q 026727 73 IMVGKALKQ-LP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELK 150 (234)
Q Consensus 73 ~~lg~al~~-~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~ 150 (234)
+.+|++|++ .. -|.|.+|+++. .++..+...+.++.+.. . ...+..+..+....++.++
T Consensus 35 ~~~a~~L~~~~~~~D~VL~Spa~R-----------------a~QTae~v~~~~~~~~~-~-~~~~l~p~~d~~~~l~~l~ 95 (163)
T COG2062 35 ELVAAWLAGQGVEPDLVLVSPAVR-----------------ARQTAEIVAEHLGEKKV-E-VFEELLPNGDPGTVLDYLE 95 (163)
T ss_pred HHHHHHHHhcCCCCCEEEeChhHH-----------------HHHHHHHHHHhhCcccc-e-eccccCCCCCHHHHHHHHH
Confidence 456889987 33 35566666543 33345555556662211 1 2333445566777888888
Q ss_pred HHHHcCcccEEecCCCcHHH
Q 026727 151 KLVEEGKIKYIGLSEASADT 170 (234)
Q Consensus 151 ~l~~~G~ir~iGvsn~~~~~ 170 (234)
++.+ -+..+.+..|++..
T Consensus 96 ~~~d--~v~~vllVgH~P~l 113 (163)
T COG2062 96 ALGD--GVGSVLLVGHNPLL 113 (163)
T ss_pred Hhcc--cCceEEEECCCccH
Confidence 8777 68889999998743
No 341
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=23.26 E-value=5.7e+02 Score=23.20 Aligned_cols=101 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHc-CCC--EEeCCcCcCCCChhHHHHHHHHhc---CCCCc-eEEEeeeccccCCCCCcCCCCCHHH
Q 026727 39 LSHEVGCSIIKETFNR-GIT--LFDTSDVYGVDHDNEIMVGKALKQ---LPRDK-IQLATKFGCFMLDGVSIGVKGSPEY 111 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gin--~~DtA~~Yg~~g~sE~~lg~al~~---~~R~~-~~i~tK~~~~~~~~~~~~~~~~~~~ 111 (234)
.+.++..+++++.-+. ||+ +|=-.+..-. +...+-..++. .+.=+ +.|.|++.... +..
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll---~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~-----------P~R 203 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLL---SDDYLDWILTELRAIPHVEVIRIGTRVPVVL-----------PQR 203 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccC---ChHHHHHHHHHHhhcCCCceEEEeecccccc-----------ccc
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (234)
+...+-+.|++.+ .-.+.+|.-.+..-..++.++++.|++.|
T Consensus 204 IT~ell~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aG 245 (417)
T TIGR03820 204 ITDELVAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAG 245 (417)
T ss_pred cCHHHHHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcC
No 342
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=23.24 E-value=2.2e+02 Score=20.35 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=31.3
Q ss_pred cccEEecCCCcHHHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 157 KIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 157 ~ir~iGvsn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
.|.+-||...+...+..+.... ..-+-||.- ...++.+.++++|| +..+..
T Consensus 47 ~Ii~~~VG~it~sDI~~A~~~~---a~Ii~FNv~---~~~~~~~~a~~~~V~I~~~~V 98 (108)
T PF11987_consen 47 KIIHAGVGPITESDIELASASN---AIIIAFNVK---VSPDAKDLAKKSGVKIRSHNV 98 (108)
T ss_dssp EESEEEESSBHHHHHHHHHHHC----EEEESSS----B-HHHHHCHHSSTSEEEESTT
T ss_pred cEEEeeCCCCCHHHHHHHHhhC---CEEEEeeCC---CCHHHHHHHHHcCCEEEEeCH
Confidence 4557788887777776665533 222334443 23677888888888 877654
No 343
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.23 E-value=1.8e+02 Score=25.53 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEE
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQ 133 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~l 133 (234)
+.+.+++.++.. .+++.+++.+|.+
T Consensus 168 t~e~~~~tl~~~-~~l~p~~is~y~L 192 (353)
T PRK05904 168 KLKDLDEVFNFI-LKHKINHISFYSL 192 (353)
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEEee
Confidence 344444444432 3344444444443
No 344
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=23.22 E-value=5.5e+02 Score=23.04 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=41.8
Q ss_pred ccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc---CCeeEEeecCCCCCCCchhcHHHHHH
Q 026727 127 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HPITAVQMEYSLWTREIEDDIIPLCR 203 (234)
Q Consensus 127 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~ 203 (234)
.+|++.++.-..+ +.++..++.++..+.-.+- +=+...+++.++++++. .+|-..- ...+.-+++.+.|+
T Consensus 69 ~~D~Ialr~~S~D-Pae~fa~~vk~V~~a~~~P-LIL~~~D~evl~aale~~~~~kpLL~a-----At~eNyk~m~~lA~ 141 (386)
T PF03599_consen 69 GADMIALRLESGD-PAEEFAKAVKKVAEAVDVP-LILCGCDPEVLKAALEACAGKKPLLYA-----ATEENYKAMAALAK 141 (386)
T ss_dssp E-SEEEEE-GGGS-THHHHHHHHHHHHHC-SSE-EEEESSHHHHHHHHHHHTTTS--EEEE-----EBTTTHHHHHHHHH
T ss_pred cccEEEEEecCCC-hHHHHHHHHHHHHHhcCCC-EEEEeCCHHHHHHHHHHhCcCCcEEeE-----cCHHHHHHHHHHHH
Confidence 5677777754322 1455666666665543332 33333477777777664 2332221 12222367888888
Q ss_pred HCCe-EEEeecc
Q 026727 204 FLHI-FLPYNPS 214 (234)
Q Consensus 204 ~~gi-v~a~spl 214 (234)
++|. +++.+|.
T Consensus 142 ~y~~pl~v~sp~ 153 (386)
T PF03599_consen 142 EYGHPLIVSSPI 153 (386)
T ss_dssp HCT-EEEEE-SS
T ss_pred HcCCeEEEEecc
Confidence 8888 8888876
No 345
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=23.09 E-value=3.2e+02 Score=20.27 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=41.1
Q ss_pred CCCCceEEEee-eccccCCCCCcCCCCCHHHHHHHHHHHHHHcC--CCccCeEEEecCCCC-CCHHHHHHHHHHHHHc
Q 026727 82 LPRDKIQLATK-FGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (234)
Q Consensus 82 ~~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 155 (234)
..|=.+.|+-| ++. . ..+..+++.+.++.+... ..-.|++++..+... .+..++.+.|..|.+.
T Consensus 45 ~~RiG~~VsKK~~g~-A---------V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 45 HPRLGLVIGKKSVKL-A---------VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred CccEEEEEecccCcc-H---------hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34555677777 443 2 347788888888887653 245799999887543 4566666666666543
No 346
>PRK00915 2-isopropylmalate synthase; Validated
Probab=22.98 E-value=6.2e+02 Score=23.53 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhc-CCCCceEEEeeeccccCC-------CCC---------
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPRDKIQLATKFGCFMLD-------GVS--------- 102 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~-~~R~~~~i~tK~~~~~~~-------~~~--------- 102 (234)
+.++..++.....+.||..|+.......+.. .+.+ +.+.+ .+...+...+......-+ ...
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d-~~~v-~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~ 101 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGFPASSPGD-FEAV-KRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIA 101 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCChHH-HHHH-HHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEEC
Confidence 6788889999988999999998653321121 2223 33422 222222222211000000 000
Q ss_pred -------cCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCC-CCCHHHHHHHHHHHHHcCcccEEecCC----CcHHH
Q 026727 103 -------IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSE----ASADT 170 (234)
Q Consensus 103 -------~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvsn----~~~~~ 170 (234)
.....+++.+.+.+.++.+...---++ +.+..++. ..+.+.+++.++.+.+.| +..|.+++ ..|.+
T Consensus 102 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~ 179 (513)
T PRK00915 102 TSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD-VEFSAEDATRTDLDFLCRVVEAAIDAG-ATTINIPDTVGYTTPEE 179 (513)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCCCCCHHHHHHHHHHHHHcC-CCEEEEccCCCCCCHHH
Confidence 011234555555555544433211122 23333332 245666778888888887 56677775 34665
Q ss_pred HHHHhh
Q 026727 171 IRRAHA 176 (234)
Q Consensus 171 l~~~~~ 176 (234)
+.++++
T Consensus 180 ~~~~i~ 185 (513)
T PRK00915 180 FGELIK 185 (513)
T ss_pred HHHHHH
Confidence 554443
No 347
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.98 E-value=5.4e+02 Score=22.85 Aligned_cols=153 Identities=12% Similarity=-0.013 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
+.++..+....+++.|++.|=.--.-.+.....+.+ +++++.-.+++-|..=... .++.+... +.
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v-~avRe~~G~~~~l~vDaN~----------~w~~~~A~----~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRI-EAALDVLGDGARLAVDANG----------RFDLETAI----AY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHHH----HH
Confidence 445566677778899999875421111100112223 3444311123333222111 13343322 23
Q ss_pred HHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCcHHHHHHHhhcCCe----eEEeecCCCCCC-C
Q 026727 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPI----TAVQMEYSLWTR-E 193 (234)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvsn~~~~~l~~~~~~~~~----~~~q~~~n~~~~-~ 193 (234)
++.|. .+++.++..|-+.. -++.+.+|.+...|. ..|=|-++...+.++++..-. +++|....-.-. .
T Consensus 225 ~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit 298 (385)
T cd03326 225 AKALA--PYGLRWYEEPGDPL----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLP 298 (385)
T ss_pred HHHhh--CcCCCEEECCCCcc----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHH
Confidence 33442 35777888775433 366677777765554 445556788899888876544 888886554331 1
Q ss_pred chhcHHHHHHHCCe-EEEeec
Q 026727 194 IEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 194 ~~~~l~~~~~~~gi-v~a~sp 213 (234)
...++.+.|+.+|+ +..+.|
T Consensus 299 ~~~kia~lA~a~gi~~~~~~p 319 (385)
T cd03326 299 EYLRMLDVLEAHGWSRRRFFP 319 (385)
T ss_pred HHHHHHHHHHHcCCCCceeec
Confidence 12789999999998 644443
No 348
>PLN02438 inositol-3-phosphate synthase
Probab=22.97 E-value=5.1e+02 Score=24.15 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCC----CHHHHHHHHHHHHHcCcc
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIEDTMGELKKLVEEGKI 158 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----~~~~~~~~l~~l~~~G~i 158 (234)
.+.|++.+++-.++-|+|.+=++...+-++.. +..+.+++|++..+++.-
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~~ 259 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDEA 259 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCCC
Confidence 46777777777788888875444444333222 334688999999888753
No 349
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.90 E-value=3.3e+02 Score=26.49 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCcHHHHHHHhhcCCeeEEee
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (234)
+.+.+++-++.....-....--+++|+..+... ...+++|.+..++ +.+..|.++|.....+..+... +.++
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR----Cq~f 178 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR----CLQF 178 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH----HHhc
Confidence 456666666555433333455688888765432 3577888888887 8999999999765544444332 3333
Q ss_pred cCCCCCCCc-hhcHHHHHHHCCe
Q 026727 186 EYSLWTREI-EDDIIPLCRFLHI 207 (234)
Q Consensus 186 ~~n~~~~~~-~~~l~~~~~~~gi 207 (234)
.|+.+.... ...+...|.+.|+
T Consensus 179 ~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 179 NLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred ccCCCChHHHHHHHHHHHHHcCC
Confidence 444444321 1233334555565
No 350
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=22.88 E-value=3e+02 Score=19.83 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCCCceEEEee-eccccCCCCCcCCCCCHHHHHHHHHHHHHHcC--CCccCeEEEecCCC-CCCHHHHHHHHHHHHHc
Q 026727 82 LPRDKIQLATK-FGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDT-SVSIEDTMGELKKLVEE 155 (234)
Q Consensus 82 ~~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 155 (234)
.+|=.+.|+-| ++. . ..+..+++.+.++.+.+. ....|++++-.+.. ..+..++.+.|..+.+.
T Consensus 44 ~~R~G~~VsKK~~g~-A---------V~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 44 HPRLGLTVAKKNVKR-A---------HERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred CcEEEEEEEcccCcc-h---------hHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34555667776 442 2 247778888888777553 23469999987754 34677777777776543
No 351
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.85 E-value=2.5e+02 Score=26.60 Aligned_cols=54 Identities=20% Similarity=0.165 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHhc-CCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHc-CCCccCeEEEecCCC
Q 026727 69 HDNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRL-DVDYIDLYYQHRVDT 138 (234)
Q Consensus 69 g~sE~~lg~al~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~d~iDl~~lh~~~~ 138 (234)
|-|-+.++++|.. .+|+++.|..-..- ++ +-+-.||+|| |+.|+.-+.+-|-.+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTYE-------------Re---~VLm~sLeRL~gLPYLnKvvVVWNsp 687 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTYE-------------RE---AVLMGSLERLHGLPYLNKVVVVWNSP 687 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEeh-------------HH---HHHHHHHHHhhCCcccceEEEEeCCC
Confidence 3488889999976 78999888765432 22 3477889888 489999888877543
No 352
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.84 E-value=6.7e+02 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDT 61 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~Dt 61 (234)
.+.++...+....-+.|+..++.
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~ 46 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLES 46 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEe
Confidence 36677777777777889998887
No 353
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=22.80 E-value=5.4e+02 Score=23.02 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=51.1
Q ss_pred cCCCEEeCCc--------CcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCC--CCCHHHHHHHHHHHHHHc
Q 026727 54 RGITLFDTSD--------VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGV--KGSPEYVRKCCEASLKRL 123 (234)
Q Consensus 54 ~Gin~~DtA~--------~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~--~~~~~~i~~~~~~sL~~L 123 (234)
..++++||.. .|. |.....+-.+.+ ..|-++++.+.--..+..+|-... ...++.+...+++.|++.
T Consensus 291 ~~~~f~Dt~~~~t~~y~~~y~--g~~~p~l~~~~~-~~ryDlvlll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~ 367 (399)
T PRK08099 291 NKVAFIDTDFVTTQAFCKKYE--GREHPFVQALID-EYRFDLTILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKEN 367 (399)
T ss_pred CCeEEEeCChHHHHHHHHHhC--CCCCHHHHHHHH-hCCCCEEEEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHc
Confidence 6799999963 343 334444444554 345555555532222212221111 113567788899999999
Q ss_pred CCCccCeEEEecCCCCCCHHHHHHHHHHHHH
Q 026727 124 DVDYIDLYYQHRVDTSVSIEDTMGELKKLVE 154 (234)
Q Consensus 124 g~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 154 (234)
|..|+.+ -..+....+..+.++++++..
T Consensus 368 g~~~v~l---~~g~~~eR~~~a~~~i~~~l~ 395 (399)
T PRK08099 368 NIEYVHV---ESPDYDKRYLRCVELVDQMLG 395 (399)
T ss_pred CCCEEEE---CCCCHHHHHHHHHHHHHHHhh
Confidence 9775444 222333345556666666653
No 354
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=22.74 E-value=5.2e+02 Score=22.62 Aligned_cols=119 Identities=10% Similarity=0.151 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRG---ITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---in~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (234)
.+.++..+++....+.- +-.+|..+..+. -...+-+.+. ...-++|.+|.-.... ....+.+.+-
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---~~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~ 115 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS---LIPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEW 115 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC---ccHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHH
Confidence 35666667666554321 236676554442 1122223332 3456789999764321 1335666666
Q ss_pred HHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHH
Q 026727 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADT 170 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~ 170 (234)
+++.++.+|....+++.+.. .....++++++.+.++.+.+.|-.+|.+|..-..
T Consensus 116 l~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS 169 (360)
T ss_pred HHHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 66677778765446666543 3445688899999888766788899999976543
No 355
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.56 E-value=6.1e+02 Score=23.35 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCCcCcCCC-C-hhHHHHH--HHHhc-CCCCceEEEeeecccc-------------CCC
Q 026727 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVD-H-DNEIMVG--KALKQ-LPRDKIQLATKFGCFM-------------LDG 100 (234)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gin~~DtA~~Yg~~-g-~sE~~lg--~al~~-~~R~~~~i~tK~~~~~-------------~~~ 100 (234)
+.+...+++..+++ .+++.=|.+.-+... . .-|.+.. +.++. ...+.+++.+=+.... .+.
T Consensus 29 ~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~ 108 (469)
T PRK09613 29 DKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK 108 (469)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCC
Confidence 55668888888886 356655555444320 0 1222322 22332 2234444433221100 000
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHH----cCcccEEecC--CCcHHHHHHH
Q 026727 101 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE----EGKIKYIGLS--EASADTIRRA 174 (234)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~----~G~ir~iGvs--n~~~~~l~~~ 174 (234)
......++.+.|.+.++. +...|...+-+..=..| +..+++-+.+.++.+++ .|.++.++|+ ..+.++++++
T Consensus 109 ~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~L 186 (469)
T PRK09613 109 EIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKL 186 (469)
T ss_pred CCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHH
Confidence 011234678999999886 46788766544321222 33466666777777765 4677766664 4677888887
Q ss_pred hhcC--CeeEEeecCC--------CCCC--Cc--hhcHHHHHHHCCe-EEEeecc
Q 026727 175 HAVH--PITAVQMEYS--------LWTR--EI--EDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 175 ~~~~--~~~~~q~~~n--------~~~~--~~--~~~l~~~~~~~gi-v~a~spl 214 (234)
.+.+ ...++|=-|| +..+ .. .-+.++.+++.|+ -++.+.|
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 7652 3444454443 2111 11 1578899999999 8888887
No 356
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.53 E-value=4.5e+02 Score=21.80 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCc
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVY 65 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y 65 (234)
.+.++..+++....++||..|+.....
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~ 43 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPA 43 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 377889999999999999999986543
No 357
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=22.49 E-value=4.2e+02 Score=23.37 Aligned_cols=49 Identities=6% Similarity=-0.067 Sum_probs=29.2
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeecc
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+.+.++++++. .+..++..+-|+...- +.+++.+.|+++|+ ++.=+..
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~ 173 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTF 173 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCc
Confidence 356677766542 3344555555654322 23788899999998 7744443
No 358
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=22.45 E-value=1.1e+02 Score=27.12 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeecccc
Q 026727 45 CSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFM 97 (234)
Q Consensus 45 ~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~ 97 (234)
+.++++|+|+|-+++|.+-.-. -=|.+--+.=+...+..++|.+-.+...
T Consensus 99 E~VVkacienG~~~vDISGEP~---f~E~mq~kYhd~A~ekGVYIVsaCGfDS 148 (423)
T KOG2733|consen 99 EPVVKACIENGTHHVDISGEPQ---FMERMQLKYHDLAKEKGVYIVSACGFDS 148 (423)
T ss_pred cHHHHHHHHcCCceeccCCCHH---HHHHHHHHHHHHHHhcCeEEEeecccCC
Confidence 4789999999999999863211 1344444333335677899998888654
No 359
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.44 E-value=5.1e+02 Score=22.36 Aligned_cols=90 Identities=13% Similarity=-0.005 Sum_probs=50.1
Q ss_pred cCeEEEecCCCCCCH-HHHHHHHHHHHHcCcccEEecCC----CcHHH----HHHHhhcCCeeEE-eecCCCCC--CCch
Q 026727 128 IDLYYQHRVDTSVSI-EDTMGELKKLVEEGKIKYIGLSE----ASADT----IRRAHAVHPITAV-QMEYSLWT--REIE 195 (234)
Q Consensus 128 iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvsn----~~~~~----l~~~~~~~~~~~~-q~~~n~~~--~~~~ 195 (234)
+.-+.+-.-++-... ....+.++.+..-..++.+|+.+ ..+.. +.+.++..++..+ ++.+|-.. .+..
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~ 222 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEV 222 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHH
Confidence 333445443433221 12456666666667777777764 32222 2223333333333 44665432 1222
Q ss_pred hcHHHHHHHCCe-EEEeecccCC
Q 026727 196 DDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 196 ~~l~~~~~~~gi-v~a~spl~~G 217 (234)
.+.++.+++.|+ +...+++..|
T Consensus 223 ~~ai~~L~~~Gi~v~~qtvllkg 245 (321)
T TIGR03821 223 ADALAKLRNAGITLLNQSVLLRG 245 (321)
T ss_pred HHHHHHHHHcCCEEEecceeeCC
Confidence 678888999999 9999999777
No 360
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=22.39 E-value=1.4e+02 Score=23.05 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=16.6
Q ss_pred hcHHHHHHHCCe-EEEeecc
Q 026727 196 DDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 196 ~~l~~~~~~~gi-v~a~spl 214 (234)
.-++-.|.++|+ +.-|+|.
T Consensus 83 Gvilla~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 83 GVAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHHcCCCEEEECHH
Confidence 346888999999 9999998
No 361
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=22.21 E-value=4.6e+02 Score=21.82 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCcccEEecCCCc
Q 026727 144 DTMGELKKLVEEGKIKYIGLSEAS 167 (234)
Q Consensus 144 ~~~~~l~~l~~~G~ir~iGvsn~~ 167 (234)
++++.++.+++.|.=-.+|+||-+
T Consensus 186 ~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 186 ELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHhCCCcEEEEecccH
Confidence 568888888888877799999955
No 362
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=22.18 E-value=4.5e+02 Score=21.68 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (234)
++++.......+.++|..|+=|+..+...|-..+-+- .+++.-... +--|..... .+.+....-++.-
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~-lM~~~vg~~--vgvKaSGGI---------rt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVK-LMKETVGGR--VGVKASGGI---------RTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHH-HHHHHhccC--ceeeccCCc---------CCHHHHHHHHHHh
Confidence 6677799999999999999999997775343433332 333311111 222221111 4588888888888
Q ss_pred HHHcCCC
Q 026727 120 LKRLDVD 126 (234)
Q Consensus 120 L~~Lg~d 126 (234)
..|+|++
T Consensus 206 a~RiGtS 212 (228)
T COG0274 206 ATRIGTS 212 (228)
T ss_pred HHHhccc
Confidence 8899875
No 363
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=22.16 E-value=3.3e+02 Score=20.16 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=36.0
Q ss_pred hHHHHHHHHhcCCCCceE-EEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCC--CccCeEEEecC
Q 026727 71 NEIMVGKALKQLPRDKIQ-LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRV 136 (234)
Q Consensus 71 sE~~lg~al~~~~R~~~~-i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~ 136 (234)
+-+.+-+||++. -|.|+ ..-|.+--....+ ++..+.=.+.+++.|+.||+ ++++.+++...
T Consensus 42 n~~fvl~Al~~G-aDGV~v~GC~~geCHy~~G----N~ka~rR~~~lke~l~elgie~eRv~~~wiSa~ 105 (132)
T COG1908 42 NPEFVLKALRKG-ADGVLVAGCKIGECHYISG----NYKAKRRMELLKELLKELGIEPERVRVLWISAA 105 (132)
T ss_pred CHHHHHHHHHcC-CCeEEEecccccceeeecc----chHHHHHHHHHHHHHHHhCCCcceEEEEEEehh
Confidence 456667788743 34444 4455543221111 24566667789999999996 57777666543
No 364
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=22.16 E-value=4.9e+02 Score=22.05 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHcCCC----EEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeecc
Q 026727 39 LSHEVGCSIIKETFNRGIT----LFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGC 95 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin----~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~ 95 (234)
.+.+.+-.+++.+++.|+| ++|| -|+ -++.=.+-.+..+.-++.|+-|.-.
T Consensus 120 vshdsam~LI~~v~~~gvnvteiyVDT---VGp---p~~Yq~kLek~FP~~k~tV~kKADS 174 (301)
T KOG2299|consen 120 VSHDSAMGLIDEVLDQGVNVTEIYVDT---VGP---PAKYQEKLEKRFPGIKFTVTKKADS 174 (301)
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEEec---CCC---hHHHHHHHHhhCCCeEEEEeecccc
Confidence 4677888999999999999 6777 344 4444333334355566777777543
No 365
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=22.15 E-value=1.6e+02 Score=26.30 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=58.6
Q ss_pred hHHHHHHHHhc-CCCCceEEEeeeccccCC----CC---CcCCCCCHHHHHHHHHHHHHHcC-CCccCeEEEec----CC
Q 026727 71 NEIMVGKALKQ-LPRDKIQLATKFGCFMLD----GV---SIGVKGSPEYVRKCCEASLKRLD-VDYIDLYYQHR----VD 137 (234)
Q Consensus 71 sE~~lg~al~~-~~R~~~~i~tK~~~~~~~----~~---~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~----~~ 137 (234)
+-++-+++++. .++..|+|+.=.|+.... .| ...+.++.+.---.++.-|..|. ...=|+++||. |.
T Consensus 106 AL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPT 185 (396)
T COG1448 106 ALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPT 185 (396)
T ss_pred HHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCC
Confidence 67777888877 667778888776654321 01 11222222222223333333332 24558999874 44
Q ss_pred CCCCHHHHHHHHHHHH-HcCcccEE-----ecCCC---cHHHHHHHhhcCC
Q 026727 138 TSVSIEDTMGELKKLV-EEGKIKYI-----GLSEA---SADTIRRAHAVHP 179 (234)
Q Consensus 138 ~~~~~~~~~~~l~~l~-~~G~ir~i-----Gvsn~---~~~~l~~~~~~~~ 179 (234)
--.+..+.|..+.++. +.|+|-.+ |+.+- ++..++.+++..+
T Consensus 186 G~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~ 236 (396)
T COG1448 186 GIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGP 236 (396)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCC
Confidence 3344567888877775 45666544 44432 2334555555544
No 366
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=22.07 E-value=5.3e+02 Score=22.93 Aligned_cols=45 Identities=7% Similarity=-0.048 Sum_probs=31.2
Q ss_pred CcHHHHHHHhhc-CCeeEEeecCCCCCCCc-hhcHHHHHHHCCe-EEE
Q 026727 166 ASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRFLHI-FLP 210 (234)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi-v~a 210 (234)
.+.+.+++++.. .+..++..+.|+...-. ..++.+.|+++|+ ++.
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~viv 190 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVL 190 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence 467778777643 45556666777766432 3789999999999 773
No 367
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=22.01 E-value=33 Score=23.50 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEE
Q 026727 124 DVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI 161 (234)
Q Consensus 124 g~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i 161 (234)
|.|-+| +++.......+.+++...-..|.+.|.|+++
T Consensus 32 GsdlVd-WL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV 68 (84)
T cd04438 32 GSDLVD-WLLSHVEGLTDRREARKYASSLLKLGYIRHT 68 (84)
T ss_pred chHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCcEEec
Confidence 444444 3333332234567899999999999999886
No 368
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=22.01 E-value=77 Score=22.14 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 165 (234)
..-.|-.-|...|.||.-.+.-. ...+++++.+.+++|.+.|+|..+.=+.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~---l~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARR---LKIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHH---HCCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 34456666777787776543332 2467889999999999999999887553
No 369
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=21.97 E-value=64 Score=32.40 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHH-HHHHHHcCcccEEecCC
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGE-LKKLVEEGKIKYIGLSE 165 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvsn 165 (234)
...=++++.......+..++|+|-|..|+.+..++.+++. +.+.-.+=..+.|-||+
T Consensus 6 ~~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLefhGVMRFYFQDag~kvaTKCiRVsS 63 (1629)
T KOG1892|consen 6 RDEEREKLADIIQQWNANRLDLFELSQPTEDLEFHGVMRFYFQDAGGKVATKCIRVSS 63 (1629)
T ss_pred hhhHHHHHHHHHHHhcccccceeeccCCCccceeeeeEEEEeecccchhhhheeEecc
Confidence 3455677888888899999999999999776555444322 12211112345566655
No 370
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=21.87 E-value=2.8e+02 Score=21.96 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc
Q 026727 141 SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 141 ~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~ 177 (234)
.+.++.+.|+.|++.|.--+| +||.....++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 345678888889988865555 677666666555543
No 371
>PRK10997 yieM hypothetical protein; Provisional
Probab=21.80 E-value=3e+02 Score=25.50 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCC---CccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEec--CCCcHHHHHHHhh
Q 026727 111 YVRKCCEASLKRLDV---DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL--SEASADTIRRAHA 176 (234)
Q Consensus 111 ~i~~~~~~sL~~Lg~---d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv--sn~~~~~l~~~~~ 176 (234)
.+..+++..++.++. ..-|++++-+.......++..+.+..|++++..|..|| |++....+.++.+
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ifD 468 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIFD 468 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhcC
Confidence 356667777777763 24788888876443335678899999998666665555 5554444555554
No 372
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.78 E-value=4.5e+02 Score=21.50 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHH
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKA 78 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~a 78 (234)
+.+++.++.+..++.|++.++.+..-.+ +.+.+.+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~---a~~~i~~l 60 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDF---AHEVFAEL 60 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCc---HHHHHHHH
Confidence 7899999999999999999997754443 66666543
No 373
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.72 E-value=2.4e+02 Score=28.41 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCC--CCHHHHHHHHHHHHHcCcccEEecCCCcH--HHHHHHhhcCCeeEEe
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQ 184 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvsn~~~--~~l~~~~~~~~~~~~q 184 (234)
.+.+...+.+.|++.+.. .+-+.+.-.+.. .+.+.+...++.|++.|- .|.+.+|.. ..+..+.+ .+++.+=
T Consensus 939 ~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~~~~~l~~-~~~d~iK 1014 (1092)
T PRK09776 939 SPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLSSFNYLKA-FMADYLK 1014 (1092)
T ss_pred CchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCchHHHHHHh-CCCCEEE
Confidence 444556677777777654 344555544332 455678899999999996 355555432 22232222 3455555
Q ss_pred ecCCCCC--------CCchhcHHHHHHHCCe-EEEee
Q 026727 185 MEYSLWT--------REIEDDIIPLCRFLHI-FLPYN 212 (234)
Q Consensus 185 ~~~n~~~--------~~~~~~l~~~~~~~gi-v~a~s 212 (234)
+.-++.. +.....++..|++.|+ +++-+
T Consensus 1015 id~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaeg 1051 (1092)
T PRK09776 1015 LDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGP 1051 (1092)
T ss_pred ECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecc
Confidence 5433322 1122668889999999 88754
No 374
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.69 E-value=88 Score=22.70 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcC
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL 82 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~ 82 (234)
.+.+.-.+++...++.|.+.-+.|..||- ++..+..|.++.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI---s~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV---AASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 36777788999999999999999999997 999999999863
No 375
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.65 E-value=5.9e+02 Score=22.78 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHH----HHHcCC-CccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc---C
Q 026727 107 GSPEYVRKCCEAS----LKRLDV-DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---H 178 (234)
Q Consensus 107 ~~~~~i~~~~~~s----L~~Lg~-d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~---~ 178 (234)
.+.+.+....++. .++.|- =.+|-+-+.+. +.+.+...++.+...+.| .-+-+++++++.++.+++. .
T Consensus 107 m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~--Sgdpekfa~ave~v~~~~--~pv~l~s~dpevmkaaLev~~dq 182 (467)
T COG1456 107 MDEEELVERANEIANFRKERVGEKLKLDGVAIRNR--SGDPEKFAEAVEKVAEAG--LPVILCSFDPEVMKAALEVVKDQ 182 (467)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEec--CCCHHHHHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHhhcc
Confidence 4455555544433 233331 13566666654 456677888888888999 5688899999999888765 1
Q ss_pred CeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeec
Q 026727 179 PITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 179 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~sp 213 (234)
+|-.+ ....+...++.+.+-+.++ ++-.++
T Consensus 183 kPllY-----aAte~n~~e~~klav~y~vplvl~a~ 213 (467)
T COG1456 183 KPLLY-----AATEDNWKEFAKLAVEYKVPLVLSAF 213 (467)
T ss_pred Cceee-----ecccccHHHHHHHHhhcCCcEEEecc
Confidence 22111 1111222556666666666 554443
No 376
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=21.55 E-value=4.4e+02 Score=21.34 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHc-CCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHH
Q 026727 40 SHEVGCSIIKETFNR-GITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (234)
+.+++..+.+...+. |+-|...++-|= +-+...+..+..+. .++++-... .+.+. +.+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V----s~~~a~~i~~~v~~-----~~~VgVf~n--------~~~~~----i~~ 69 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV----SPEQAREIASAVPK-----VKVVGVFVN--------ESIEE----ILE 69 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC----CHHHHHHHHHhCCC-----CCEEEEECC--------CCHHH----HHH
Confidence 455555544443333 555555577776 34444444443332 113332211 22333 444
Q ss_pred HHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCc
Q 026727 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (234)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 167 (234)
.++.++ +|++|||...+. +..+.|.+...-..++++.++.-.
T Consensus 70 i~~~~~---ld~VQlHG~e~~----~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 70 IAEELG---LDAVQLHGDEDP----EYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHHhcC---CCEEEECCCCCH----HHHHHHHhhcCCceEEEEEeCCcc
Confidence 445554 799999987442 233333333334688899998643
No 377
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=21.54 E-value=1.5e+02 Score=27.20 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 159 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 159 (234)
.+...+.+++.|++||++ .|.+. . .........+.+.+++|+++|.+-
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~-~-t~~~~~~~~v~~~~~~L~~~G~iY 116 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI-R-TTDPRHKEAVQEIFQRLLANGDIY 116 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce-e-CCCHHHHHHHHHHHHHHHHCCCEE
Confidence 567778899999999987 67542 1 222223567889999999999864
No 378
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.50 E-value=5.6e+02 Score=22.48 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcC----cccEEecC--CCcHHHHHHHhh---cCCeeEEeecCCCCCCC----ch----hcHHHHHH
Q 026727 141 SIEDTMGELKKLVEEG----KIKYIGLS--EASADTIRRAHA---VHPITAVQMEYSLWTRE----IE----DDIIPLCR 203 (234)
Q Consensus 141 ~~~~~~~~l~~l~~~G----~ir~iGvs--n~~~~~l~~~~~---~~~~~~~q~~~n~~~~~----~~----~~l~~~~~ 203 (234)
+++++++++.+..+.+ +++++=+. |.+.+.++++.+ ..+..++-++||+.... +. ..+.+..+
T Consensus 232 ~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 232 PLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567788887776654 22344443 445566655544 35567888999987521 11 46677788
Q ss_pred HCCe-EEEeecc
Q 026727 204 FLHI-FLPYNPS 214 (234)
Q Consensus 204 ~~gi-v~a~spl 214 (234)
++|| +....+.
T Consensus 312 ~~gi~v~vR~~~ 323 (349)
T PRK14463 312 DKHVTVITRSSR 323 (349)
T ss_pred HCCceEEEeCCC
Confidence 9999 8877766
No 379
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=21.48 E-value=4.2e+02 Score=21.89 Aligned_cols=105 Identities=21% Similarity=0.180 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEe----------eeccccCCCCC------c
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLAT----------KFGCFMLDGVS------I 103 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~t----------K~~~~~~~~~~------~ 103 (234)
+.+...++.++|-..|-+|+|.|..- +++. ..+....=.+.|+. |.|..--.-|+ .
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAadp-------~LV~-~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~q 96 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAADP-------ELVK-LAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQ 96 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCCH-------HHHH-HHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhc
Confidence 77889999999999999999987433 2233 22221111222222 11111000000 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcC
Q 026727 104 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (234)
Q Consensus 104 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (234)
...++.+.+.+-.++..+.|- |+.+--..+.-.++++..+--++|++.|
T Consensus 97 Gr~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 97 GRRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAG 145 (242)
T ss_pred CCeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhC
Confidence 224677788887777777773 3333333344456777777777777654
No 380
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=21.40 E-value=4.3e+02 Score=23.15 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=29.0
Q ss_pred cHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeec
Q 026727 167 SADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNP 213 (234)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~sp 213 (234)
+.+.++++++. .+..++....|+.-.- +..++.+.|+++|+ ++.=..
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 46667666542 3455555566654332 23788999999999 774333
No 381
>PRK05939 hypothetical protein; Provisional
Probab=21.37 E-value=5.3e+02 Score=22.90 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=35.2
Q ss_pred HHHcC-cccEEecCCCcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeecc
Q 026727 152 LVEEG-KIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 152 l~~~G-~ir~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl 214 (234)
+...| .++.+-+ .+.+.+++++.. .+..++....|+.-.- +-.++.+.|+++|+ ++.=...
T Consensus 106 l~~~G~~v~~v~~--~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 106 LRGLGVEVTMVDA--TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHhcCCEEEEECC--CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 33344 3444433 356777777643 3444555555654432 22788899999999 7754443
No 382
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.35 E-value=5.1e+02 Score=22.50 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=30.8
Q ss_pred cHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCCe-EEEeecccCC
Q 026727 167 SADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLHI-FLPYNPSFCL 217 (234)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi-v~a~spl~~G 217 (234)
+.+.++++++. .+..++....|+.-.- +.+++.+.|+++|+ ++.=..++.|
T Consensus 114 d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~ 167 (369)
T cd00614 114 DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATP 167 (369)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcch
Confidence 45666666642 3455555556654322 23788899999999 8765555433
No 383
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.32 E-value=5.2e+02 Score=22.05 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=84.6
Q ss_pred ceecccccCCCCC-CCCCHHHHHHHHHHHH-HcCCCEEeCCcCcCCCC--hhHHHHHHHHhc--CCCCceEEEeeecccc
Q 026727 24 LGFGCGGLSGIYN-KPLSHEVGCSIIKETF-NRGITLFDTSDVYGVDH--DNEIMVGKALKQ--LPRDKIQLATKFGCFM 97 (234)
Q Consensus 24 lglG~~~~~~~~~-~~~~~~~~~~~l~~A~-~~Gin~~DtA~~Yg~~g--~sE~~lg~al~~--~~R~~~~i~tK~~~~~ 97 (234)
|.||.+.-.. +. ...+.++..+.+...+ ..|++.+|--..|+... .+-..+-++|+. .....+.|+.-++...
T Consensus 72 iS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p 150 (294)
T cd06543 72 VSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLP 150 (294)
T ss_pred EEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3666655322 21 1224455444444445 46999999766665311 122455666665 2223566666554322
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHcCC--CccCeEEEecCCC--CCCH-HHHHHHHHHHHHcCcccEEecCCCcHHHHH
Q 026727 98 LDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVDT--SVSI-EDTMGELKKLVEEGKIKYIGLSEASADTIR 172 (234)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~--~~~~-~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~ 172 (234)
. .++++.+ .+-+..+..|+ ++|.+.-...-.. ..++ ..+..+.+.++.+=+--+=+ ++..++-
T Consensus 151 ~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~ 218 (294)
T cd06543 151 T-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELW 218 (294)
T ss_pred C-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHH
Confidence 1 1333332 24444555564 4444444432222 2233 34555555555442221212 3444444
Q ss_pred HHhhcCCe-eEEeecCCCCCCCchhcHHHHHHHCCe-EEEeeccc
Q 026727 173 RAHAVHPI-TAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPSF 215 (234)
Q Consensus 173 ~~~~~~~~-~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl~ 215 (234)
..+...|. -.+-..=-.+.......+.++++++|| .++|=.+.
T Consensus 219 ~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~ 263 (294)
T cd06543 219 AMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLN 263 (294)
T ss_pred HHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeecc
Confidence 44443331 111100002222223789999999999 88877773
No 384
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.28 E-value=4.6e+02 Score=23.00 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHH-cCc---ccEEecCCCc-HHHHHHHhhcCC
Q 026727 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE-EGK---IKYIGLSEAS-ADTIRRAHAVHP 179 (234)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvsn~~-~~~l~~~~~~~~ 179 (234)
...+++.|.+++.......+.++| .+.-.-++...++++.++++.+.+ .|. .+.|-||+-. ...+.++.....
T Consensus 129 r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~ 206 (349)
T PRK14463 129 RNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVT 206 (349)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhccC
Confidence 346889999888877766554432 333323444456788888888875 565 4678877644 345555554322
Q ss_pred eeEEeecCCCCC
Q 026727 180 ITAVQMEYSLWT 191 (234)
Q Consensus 180 ~~~~q~~~n~~~ 191 (234)
..+.+..|..+
T Consensus 207 -~~LaiSL~a~~ 217 (349)
T PRK14463 207 -VNLAVSLNATT 217 (349)
T ss_pred -eEEEEeCCCCC
Confidence 22334444444
No 385
>PLN02231 alanine transaminase
Probab=21.28 E-value=3.2e+02 Score=25.52 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=10.3
Q ss_pred hcHHHHHHHCCe-EEE
Q 026727 196 DDIIPLCRFLHI-FLP 210 (234)
Q Consensus 196 ~~l~~~~~~~gi-v~a 210 (234)
.+++++|+++|+ ++.
T Consensus 294 ~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 294 RDIVEFCKQEGLVLLA 309 (534)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 567777777777 664
No 386
>PRK10508 hypothetical protein; Provisional
Probab=21.24 E-value=2.8e+02 Score=24.06 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHH
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLV 153 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 153 (234)
-+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 4799999999999999998775 444433 34555555555443
No 387
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=21.16 E-value=2.5e+02 Score=19.88 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHcCCC---ccCeEEEecCC-CCCCHHHHHHHHHHHHH
Q 026727 108 SPEYVRKCCEASLKRLDVD---YIDLYYQHRVD-TSVSIEDTMGELKKLVE 154 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d---~iDl~~lh~~~-~~~~~~~~~~~l~~l~~ 154 (234)
.+..+++.+.++++..... ..|++++-.+. ...+..++.+.|..+.+
T Consensus 58 ~RNriKR~lRe~~R~~~~~l~~~~d~v~~~r~~~~~~~~~~l~~~l~~ll~ 108 (111)
T PF00825_consen 58 KRNRIKRRLREAFRLNKPELPPGYDIVFIARPGALELSFEELEKELKKLLK 108 (111)
T ss_dssp HHHHHHHHHHHHHHHCTTTS-SSSEEEEEE-CGGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcCcCCHHHHHHHHHHHHH
Confidence 4788999999998887643 67888887765 33566677777666654
No 388
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=21.13 E-value=1.4e+02 Score=27.21 Aligned_cols=46 Identities=4% Similarity=-0.029 Sum_probs=30.0
Q ss_pred CcHHHHHHHhhc-----CCeeEEeecCCCCC-----CCchhcHHHHHHHCCe-EEEe
Q 026727 166 ASADTIRRAHAV-----HPITAVQMEYSLWT-----REIEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 166 ~~~~~l~~~~~~-----~~~~~~q~~~n~~~-----~~~~~~l~~~~~~~gi-v~a~ 211 (234)
.+.+.+++++.. .+..++-.+.|+.. ....+++.+.|+++|+ ++.=
T Consensus 161 id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~D 217 (460)
T PRK13238 161 FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVID 217 (460)
T ss_pred cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 567888888753 33444445566643 1112689999999999 8744
No 389
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.12 E-value=4.5e+02 Score=21.26 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEEeeec
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFG 94 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~ 94 (234)
+.+++.++.+..++.|++.++.+-.... ..+.+...-++.++--+-.-|++.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~---~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPA---ALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcc---HHHHHHHHHHHCCCCEEEEeeccC
Confidence 7899999999999999999998743333 566665443334433333455554
No 390
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=21.10 E-value=5.7e+02 Score=22.57 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=44.6
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc-CCeeEEeecCCCCCC-CchhcHHHHHHHCC
Q 026727 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTR-EIEDDIIPLCRFLH 206 (234)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 206 (234)
|-+++..|.. ......+..+...+-+...-+...+.+.+++++.. .+..++..+-|+.-. .+..++.+.|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555554432 22333444444444333222344567777776643 344555555555432 12378899999999
Q ss_pred e-EEEeecccC
Q 026727 207 I-FLPYNPSFC 216 (234)
Q Consensus 207 i-v~a~spl~~ 216 (234)
+ ++.=..+..
T Consensus 168 ~~vivDeay~~ 178 (386)
T PRK08045 168 AVSVVDNTFLS 178 (386)
T ss_pred CEEEEECCCCc
Confidence 9 775444433
No 391
>PLN02775 Probable dihydrodipicolinate reductase
Probab=21.05 E-value=5.3e+02 Score=22.06 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc
Q 026727 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (234)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~ 177 (234)
+++.|..+..+|.|++++..-.+ +-+.+.++.+.+.|+---+|.+.|+.++++++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~P----~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTLP----DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCCh----HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 45555555445789777775433 45677777888888888888888888887776554
No 392
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=21.04 E-value=2.2e+02 Score=25.48 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcC-cccEEecCCC---cHHHHHHHhhcC-CeeEEeecCCCCC-CCchhcHHHHHHHCCe-EEEeecccC
Q 026727 144 DTMGELKKLVEEG-KIKYIGLSEA---SADTIRRAHAVH-PITAVQMEYSLWT-REIEDDIIPLCRFLHI-FLPYNPSFC 216 (234)
Q Consensus 144 ~~~~~l~~l~~~G-~ir~iGvsn~---~~~~l~~~~~~~-~~~~~q~~~n~~~-~~~~~~l~~~~~~~gi-v~a~spl~~ 216 (234)
.+++.+..|..+| .|.++.|-+. +++++++++... ....+|.--|-.- -++-.++-+.|+++|+ +..=..=.-
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~ 182 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAV 182 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhc
Confidence 4677777776677 7888888763 578888877642 2333332111111 1224789999999998 776554455
Q ss_pred Cc
Q 026727 217 LQ 218 (234)
Q Consensus 217 G~ 218 (234)
||
T Consensus 183 Gk 184 (386)
T COG1104 183 GK 184 (386)
T ss_pred Cc
Confidence 55
No 393
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=20.97 E-value=6.2e+02 Score=25.30 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcc----cEEecCC-C--------cHHHHHHHhhc-
Q 026727 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI----KYIGLSE-A--------SADTIRRAHAV- 177 (234)
Q Consensus 112 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i----r~iGvsn-~--------~~~~l~~~~~~- 177 (234)
+-+.+.+.-+..|.+-+--|.|- -.....++++.+--||+.|++ -.+.|.- | .+..+.++++.
T Consensus 470 t~r~a~~~~~~~G~~~i~~yIIS---ma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~ 546 (910)
T COG2352 470 TFRVAAEAKDEFGEDAIGAYIIS---MAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLP 546 (910)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhh---ccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcCh
Confidence 34456666677776655555553 234567889999999999999 5666663 2 22334444443
Q ss_pred ---------CCeeEEeecCCCCCCC------------chhcHHHHHHHCCe-EEEe
Q 026727 178 ---------HPITAVQMEYSLWTRE------------IEDDIIPLCRFLHI-FLPY 211 (234)
Q Consensus 178 ---------~~~~~~q~~~n~~~~~------------~~~~l~~~~~~~gi-v~a~ 211 (234)
...--+++.||=-+.+ .+..+++.|+++|| +.-+
T Consensus 547 ~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlF 602 (910)
T COG2352 547 LYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLF 602 (910)
T ss_pred HHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEE
Confidence 2356778888876654 34789999999999 7543
No 394
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=20.93 E-value=1.7e+02 Score=22.71 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=27.5
Q ss_pred HHHHHhhcCCeeEEeecCCCCCCC---------chhcHHHHHHHCCe-EEEeecc
Q 026727 170 TIRRAHAVHPITAVQMEYSLWTRE---------IEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~n~~~~~---------~~~~l~~~~~~~gi-v~a~spl 214 (234)
.+.++++.++|+.+-+|--.+.+. ...-++..|.++|+ +.-|+|.
T Consensus 52 ~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 52 GLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 344444445555554543333332 12456778899999 9999999
No 395
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.88 E-value=6.1e+02 Score=23.82 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHc-CcccEEecCCCcH--HHHHHHhhcCCeeEEeecCCCCCCCchhcHHHHHHHCCe-EEEeecc
Q 026727 142 IEDTMGELKKLVEE-GKIKYIGLSEASA--DTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 142 ~~~~~~~l~~l~~~-G~ir~iGvsn~~~--~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi-v~a~spl 214 (234)
-.+++++|..+++- ++|.-||..|... ..+..++ .+.+.|..|+- .+.....+..+++.|+ ++....+
T Consensus 93 ~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l---~~~i~~~~~~~--~~e~~~~v~~lk~~G~~~vvG~~~ 164 (538)
T PRK15424 93 GFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTF---NLRIEQRSYVT--EEDARGQINELKANGIEAVVGAGL 164 (538)
T ss_pred HhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh---CCceEEEEecC--HHHHHHHHHHHHHCCCCEEEcCch
Confidence 34788888888764 5888888877542 3444444 34445543333 2223789999999999 7765544
No 396
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=20.71 E-value=3.2e+02 Score=23.85 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=60.5
Q ss_pred cCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHH
Q 026727 65 YGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIED 144 (234)
Q Consensus 65 Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~ 144 (234)
||. | +-+.+++.++... .=++|+.+ .. ....+.+.+...|++-+.+ +..+.....+.+.+.
T Consensus 6 ~G~-g-~l~~l~~~l~~~g-r~lvVt~~-~~------------~~~~~~~~v~~~L~~~~i~---~~~~~~~~~~p~~~~ 66 (366)
T PF00465_consen 6 FGR-G-ALEELGEELKRLG-RVLVVTDP-SL------------SKSGLVDRVLDALEEAGIE---VQVFDGVGPNPTLED 66 (366)
T ss_dssp EST-T-GGGGHHHHHHCTT-EEEEEEEH-HH------------HHHTHHHHHHHHHHHTTCE---EEEEEEESSS-BHHH
T ss_pred Ecc-C-HHHHHHHHHHhcC-CEEEEECc-hH------------HhCccHHHHHHHHhhCceE---EEEEecCCCCCcHHH
Confidence 553 3 6777888888653 33445555 21 1233677788888887754 455555556667888
Q ss_pred HHHHHHHHHHcCcccEEecCCCcHHHHHHHhh
Q 026727 145 TMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (234)
Q Consensus 145 ~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~ 176 (234)
+-++.+.+++.|-=--|||..-+.-.+.+++.
T Consensus 67 v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va 98 (366)
T PF00465_consen 67 VDEAAEQARKFGADCIIAIGGGSVMDAAKAVA 98 (366)
T ss_dssp HHHHHHHHHHTTSSEEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHH
Confidence 88999999988866677887766666655543
No 397
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.69 E-value=4.6e+02 Score=21.15 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCCcCcCCCChhHHHHHHHHhcCCCCceEEE
Q 026727 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLA 90 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~g~sE~~lg~al~~~~R~~~~i~ 90 (234)
+.+++.++.+..++.|++.++....-.+ +.+.+.+.-++.+ ++.|.
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~---a~~~i~~l~~~~~--~~~vG 63 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPV---ALDAIRLLRKEVP--DALIG 63 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCcc---HHHHHHHHHHHCC--CCEEE
Confidence 7889999999999999999997654333 6666665544343 45443
No 398
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=20.67 E-value=5.6e+02 Score=22.19 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEe----------CCcCcCCC-ChhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCCC
Q 026727 40 SHEVGCSIIKETFNRGITLFD----------TSDVYGVD-HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKG 107 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D----------tA~~Yg~~-g~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 107 (234)
+.+...+....+.+.|+..|| +...||.. ...-+.+.+.++... .-.+-|+.|....... ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~------~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD------QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC------Cc
Confidence 567777777888899999998 34455520 012334444444321 1146678876322210 01
Q ss_pred CHHHHHHHHHHHHHHcCCCccCeEEEecCCC-CCCHH---------HHHHHHHHHHHcC-cccEEecCC-CcHHHHHHHh
Q 026727 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIE---------DTMGELKKLVEEG-KIKYIGLSE-ASADTIRRAH 175 (234)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~---------~~~~~l~~l~~~G-~ir~iGvsn-~~~~~l~~~~ 175 (234)
+.+. ...+-+.+...| +|.+.+|.... ..... --|+.+.++++.- .|--||... .+++.+++++
T Consensus 149 t~~~-~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEF-LCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHH-HHHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 1111 223444455666 57788885321 00000 1267777777763 677787776 4677777777
Q ss_pred hcCCeeEEee
Q 026727 176 AVHPITAVQM 185 (234)
Q Consensus 176 ~~~~~~~~q~ 185 (234)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 63 555555
No 399
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.67 E-value=4.7e+02 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCC
Q 026727 40 SHEVGCSIIKETFNRGITLFDTS 62 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DtA 62 (234)
+.++..++++...+.|+..|+..
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec
Confidence 67889999999999999999965
No 400
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=20.65 E-value=5.9e+02 Score=22.43 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=48.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHhhc-CCeeEEeecCCCCCCC-chhcHHHHHHHCC
Q 026727 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRFLH 206 (234)
Q Consensus 129 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g 206 (234)
|-+++-.|.. ......+..+...+.+...-+...+.+.++++++. .+..++..+-|+.-.- +...+.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555554432 23344444544555444444445567888887753 3455555566665432 2378999999999
Q ss_pred e-EEEeeccc
Q 026727 207 I-FLPYNPSF 215 (234)
Q Consensus 207 i-v~a~spl~ 215 (234)
+ ++.=....
T Consensus 167 ~~vvvD~a~~ 176 (382)
T TIGR02080 167 AVVVVDNTFL 176 (382)
T ss_pred CEEEEECCCc
Confidence 9 87544443
No 401
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=20.65 E-value=6e+02 Score=22.51 Aligned_cols=143 Identities=10% Similarity=-0.051 Sum_probs=72.3
Q ss_pred CCHHHHHHHHH-------HHHHcCCCEEeC--Cc-CcC---------C------CChhH---HHHHH---HHhcCCCCce
Q 026727 39 LSHEVGCSIIK-------ETFNRGITLFDT--SD-VYG---------V------DHDNE---IMVGK---ALKQLPRDKI 87 (234)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gin~~Dt--A~-~Yg---------~------~g~sE---~~lg~---al~~~~R~~~ 87 (234)
++.++..++++ .|.++|+.-++- |. .|- | +|.=| +++-+ ++++.-.+++
T Consensus 140 mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f 219 (382)
T cd02931 140 LTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDF 219 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCc
Confidence 46666666654 455789998875 34 441 0 13222 11122 2333334678
Q ss_pred EEEeeeccccCCCC----------CcCCCCCHHHHHHHHHHHHHHcCCCccCeEEEecCCC----------CCCHHHHHH
Q 026727 88 QLATKFGCFMLDGV----------SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT----------SVSIEDTMG 147 (234)
Q Consensus 88 ~i~tK~~~~~~~~~----------~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~----------~~~~~~~~~ 147 (234)
.|..|+.......+ ......+.+... .+-+.|+..|+|+|+ +|.... ...-...+.
T Consensus 220 ~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~-~~~~~l~~~gvD~l~---vs~g~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T cd02931 220 PVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGL-KAAKILEEAGYDALD---VDAGSYDAWYWNHPPMYQKKGMYLP 295 (382)
T ss_pred eEEEEEechhhccccccccccccccccCCCCHHHHH-HHHHHHHHhCCCEEE---eCCCCCcccccccCCccCCcchhHH
Confidence 89999875321000 001123444443 344455666755554 442211 000011133
Q ss_pred HHHHHHHcCcccEEecCCC-cHHHHHHHhhcCCeeEEee
Q 026727 148 ELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (234)
Q Consensus 148 ~l~~l~~~G~ir~iGvsn~-~~~~l~~~~~~~~~~~~q~ 185 (234)
....+++.=.+.-+++... +++..+++++....+.+.+
T Consensus 296 ~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 296 YCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred HHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 3444444434667777775 6788888888766666665
No 402
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.55 E-value=5.5e+02 Score=21.99 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCCcCcCCC---ChhHHHHHHHHhcCC-CCceEEEeeeccccCCCCCcCCCCCHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg~~---g~sE~~lg~al~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (234)
.+.++..++++.+.+.|+..|.-+- |.| ..-.+++.. +++.+ -+++.|+|-... +.+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~gi~~v~itTNG~l----------------l~~ 103 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALPGIEDIALTTNGLL----------------LAR 103 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcCCCCeEEEEeCchh----------------HHH
Confidence 5788899999999999998776431 211 112333332 33222 225667774321 111
Q ss_pred HHHHHHHHcCCCccCeEEEecCCC---------CCCHHHHHHHHHHHHHcCcc--c--EEecCCCcHHHHHHHhhc---C
Q 026727 115 CCEASLKRLDVDYIDLYYQHRVDT---------SVSIEDTMGELKKLVEEGKI--K--YIGLSEASADTIRRAHAV---H 178 (234)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~G~i--r--~iGvsn~~~~~l~~~~~~---~ 178 (234)
.-+.|.+.|.+++- +-++..++ ...++.++++++.+++.|.- + .+-+.+.+.+++.++++. .
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23446666655433 22343322 12578899999999999853 2 233345666666665543 4
Q ss_pred CeeEEeecCCCC
Q 026727 179 PITAVQMEYSLW 190 (234)
Q Consensus 179 ~~~~~q~~~n~~ 190 (234)
++.+.-++|.++
T Consensus 182 gv~~~~ie~mp~ 193 (334)
T TIGR02666 182 GVTLRFIELMPL 193 (334)
T ss_pred CCeEEEEeccCC
Confidence 444444455544
No 403
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.54 E-value=4.2e+02 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC
Q 026727 40 SHEVGCSIIKETFNRGITLFDT 61 (234)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~Dt 61 (234)
.++.....+..|++.|+..+++
T Consensus 11 ~pENT~~af~~A~~~g~d~vE~ 32 (249)
T cd08561 11 APENTLLAFEDAVELGADVLET 32 (249)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3477889999999999998874
No 404
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=20.39 E-value=3.2e+02 Score=19.89 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCcccEEecCCCcHHHHHHHh
Q 026727 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (234)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~ 175 (234)
.+.+.+.+.+++.|+..+.+.-++-.+-.++...+-..+.+.-+++ | +.+-.|++++|....
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l---~----~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL---G----IPLRFFSAEELNAVE 73 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC---T----SEEEEE-HHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh---C----CCeEEECHHHHhcCC
Confidence 5799999999999999999888888888876654433333332222 2 344456677777554
No 405
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.32 E-value=4.8e+02 Score=21.30 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEe-CCcCcCCCChhHHHHHHHHhcCCCCceEEEeeeccccCCCCCcCCCCCHHHHHHHHH
Q 026727 39 LSHEVGCSIIKETFNRGITLFD-TSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (234)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~D-tA~~Yg~~g~sE~~lg~al~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (234)
.+.+++..+-.+|-++|+.++- +|+.-- .|++ +.|.+....=+|+.+..+... +.+.+...+.
T Consensus 132 lPpEEa~~~Rne~~k~gislvpLvaPsTt----deRm--ell~~~adsFiYvVSrmG~TG----------~~~svn~~l~ 195 (268)
T KOG4175|consen 132 LPPEEAETLRNEARKHGISLVPLVAPSTT----DERM--ELLVEAADSFIYVVSRMGVTG----------TRESVNEKLQ 195 (268)
T ss_pred CChHHHHHHHHHHHhcCceEEEeeCCCCh----HHHH--HHHHHhhcceEEEEEeccccc----------cHHHHHHHHH
Confidence 5677888888888888888776 344333 2332 234333344467888877543 3566777777
Q ss_pred HHHHHcC
Q 026727 118 ASLKRLD 124 (234)
Q Consensus 118 ~sL~~Lg 124 (234)
+.|.|..
T Consensus 196 ~L~qrvr 202 (268)
T KOG4175|consen 196 SLLQRVR 202 (268)
T ss_pred HHHHHHH
Confidence 7666654
No 406
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=20.31 E-value=1.3e+02 Score=26.51 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=37.7
Q ss_pred CCCcccCcceecccccCCC-CCCCCCH----HHHHHHHHHHHHcCCC--EEeCCcCcCC
Q 026727 16 SQGLEVSRLGFGCGGLSGI-YNKPLSH----EVGCSIIKETFNRGIT--LFDTSDVYGV 67 (234)
Q Consensus 16 ~~g~~vs~lglG~~~~~~~-~~~~~~~----~~~~~~l~~A~~~Gin--~~DtA~~Yg~ 67 (234)
+-|+.-.+|.||+-.+|.. |... +. .++.+++++-+++|++ |+|++-....
T Consensus 77 ~~gfp~e~liLGGDHLGPN~Wq~~-pA~eAM~ka~~mv~AYv~AGF~KIHLDaSM~CA~ 134 (426)
T COG4573 77 KLGFPRERLILGGDHLGPNPWQHL-PAAEAMAKADDLVKAYVAAGFTKIHLDASMSCAG 134 (426)
T ss_pred HhCCcHHHHhccCCcCCCCccccC-CHHHHHHHHHHHHHHHHHcCceeeecccccccCC
Confidence 4467788899999999864 5432 32 3467889999999998 8888876653
No 407
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=20.18 E-value=1.1e+02 Score=16.54 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCCEEeC
Q 026727 45 CSIIKETFNRGITLFDT 61 (234)
Q Consensus 45 ~~~l~~A~~~Gin~~Dt 61 (234)
.+.++.++++|+..|-|
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 56779999999999876
No 408
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.14 E-value=2.5e+02 Score=25.18 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=29.7
Q ss_pred CCcHHHHHHHhhc-----CCeeEEeecCCCCCCCc-----hhcHHHHHHHCCe-EE
Q 026727 165 EASADTIRRAHAV-----HPITAVQMEYSLWTREI-----EDDIIPLCRFLHI-FL 209 (234)
Q Consensus 165 n~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~-----~~~l~~~~~~~gi-v~ 209 (234)
|++.+.++++++. .|..+.-+..|....++ -.++.+.|++++| ++
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv 223 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV 223 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence 4555666665543 45666666667766542 2788999999999 65
No 409
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=20.14 E-value=88 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHcCCCccCeE---EEecCCC
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLY---YQHRVDT 138 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~---~lh~~~~ 138 (234)
...+.+.++...-+||+||||+. .+-+|.+
T Consensus 6 ~~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS 38 (133)
T COG4900 6 LADVEADIKNAVVRLGLDYIFQVRVVVVYSPGS 38 (133)
T ss_pred cccHHHHHHHHHHHhCcceeeeeeEEEEECCCC
Confidence 34578889999999999999874 4444543
No 410
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=20.08 E-value=2.2e+02 Score=22.73 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHcCCCccCeEEEecCCCCCCHHHHHHHHHHHHHcCccc
Q 026727 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 159 (234)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 159 (234)
.+...+.+.+.+++||+. .|.+.- .......+-+.++.|.++|.+.
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~~----es~~~~~~~~~i~~L~~~g~~~ 112 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWFG----ESSYLGLMGKVVELLEELGLLY 112 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceecc----hhhhhhHHHHHHHHHHHCCCEE
Confidence 667788899999999988 577541 1122445677778888888764
No 411
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.07 E-value=6.1e+02 Score=22.39 Aligned_cols=82 Identities=9% Similarity=0.089 Sum_probs=51.6
Q ss_pred EecCCCC-----------CCHHHHHHHHHHHH-HcC---cccEEecC--CCcHHHHHHHh---hcCCeeEEeecCCCCCC
Q 026727 133 QHRVDTS-----------VSIEDTMGELKKLV-EEG---KIKYIGLS--EASADTIRRAH---AVHPITAVQMEYSLWTR 192 (234)
Q Consensus 133 lh~~~~~-----------~~~~~~~~~l~~l~-~~G---~ir~iGvs--n~~~~~l~~~~---~~~~~~~~q~~~n~~~~ 192 (234)
||.+++. .+++++++++.++. +.| .|+++=+. |-+.++++++. +..+..++-++||++..
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 7887542 34567888887655 444 34455444 34556655554 33456888999998763
Q ss_pred C----ch----hcHHHHHHHCCe-EEEeecc
Q 026727 193 E----IE----DDIIPLCRFLHI-FLPYNPS 214 (234)
Q Consensus 193 ~----~~----~~l~~~~~~~gi-v~a~spl 214 (234)
. +. ..+.+..+++|+ +....+.
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~ 336 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESK 336 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 1 11 446667788999 8777665
Done!