BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026728
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NZ09|ADRM1_DANRE Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1
SV=1
Length = 410
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKMT G V PD RKG V I + + LIHF W DRT VEDD I+FP +
Sbjct: 20 KYLVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 79
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++VNQ +GRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 80 EFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 171 SSSGPVKLEDLQRIFSNIG-PADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYL 229
SS+ P++L DLQ I + + PA TE G+ L +L PD++ P++ ++QRL PYL
Sbjct: 261 SSTQPIQLSDLQSILATMNVPAMPTEG--SGVDLASVLTPDVMAPILANPEVQQRLLPYL 318
Query: 230 P 230
P
Sbjct: 319 P 319
>sp|Q6P877|ADRM1_XENTR Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1
PE=2 SV=1
Length = 404
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 20 KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDC 79
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V+Q +GRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 80 EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 164 EAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLPL 221
+ S TS + P++L DLQ I + + ++ +GG + L +L P+++ P++ +
Sbjct: 249 DGASAATSPTQPIQLSDLQNILATM---NVPATGEGGQQVDLASVLTPEIMAPILANAEV 305
Query: 222 EQRLAPYLP 230
++RL PYLP
Sbjct: 306 QERLMPYLP 314
>sp|Q16186|ADRM1_HUMAN Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1
SV=2
Length = 407
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
A + L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP
Sbjct: 18 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 77
Query: 71 HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
+ F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 78 DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 163 GEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLP 220
G S S + P++L DLQ I + + ++ P GG + L +L P+++ P++
Sbjct: 249 GNGASTAASPTQPIQLSDLQSILATM---NVPAGPAGGQQVDLASVLTPEIMAPILANAD 305
Query: 221 LEQRLAPYLP 230
+++RL PYLP
Sbjct: 306 VQERLLPYLP 315
>sp|Q6GN67|ADM1A_XENLA Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a
PE=2 SV=2
Length = 404
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 20 KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDC 79
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V+Q +GRVY+LKF ++ F WMQEPK ++D + C +N ++N P
Sbjct: 80 EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 164 EAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLPL 221
+ S+ TS + P++L DLQ I + + ++ +GG + L +L P+++ P++ +
Sbjct: 249 DGASEATSPTQPIQLSDLQNILATM---NVPATGEGGQQVDLASVLTPEIMAPILANAEV 305
Query: 222 EQRLAPYLP 230
++RL PYLP
Sbjct: 306 QERLTPYLP 314
>sp|Q9JMB5|ADRM1_RAT Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1
PE=2 SV=2
Length = 407
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 21 KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDC 80
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN +N P
Sbjct: 81 EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 163 GEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLP 220
G S S + P++L DLQ I + + ++ P G + L +L P+++ P++
Sbjct: 249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANAD 305
Query: 221 LEQRLAPYLP 230
+++RL PYLP
Sbjct: 306 VQERLLPYLP 315
>sp|A1L5A6|ADRM1_BOVIN Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2
SV=1
Length = 407
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 21 KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 80
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 81 EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 163 GEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLP 220
G+ S S + P++L DLQ I + + + P GG + L +L P+++ P++
Sbjct: 249 GDGASTAASPAQPIQLSDLQSILATM---SVPAGPGGGQQVDLASVLTPEIMAPILANAD 305
Query: 221 LEQRLAPYLP 230
+++RL PYLP
Sbjct: 306 VQERLLPYLP 315
>sp|Q7ZXD6|ADM1B_XENLA Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b
PE=2 SV=1
Length = 404
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT V+DD I+FP +
Sbjct: 20 KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDC 79
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V+Q +GRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 80 EFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 164 EAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLPL 221
+ S TS + ++L DLQ I + + ++ +GG + L +L P+++ P++ +
Sbjct: 249 DGASAATSPTQAIQLSDLQNILATM---NVPATGEGGQQVDLASVLTPEIMAPILANAEV 305
Query: 222 EQRLAPYLP 230
++RL PYLP
Sbjct: 306 QERLMPYLP 314
>sp|Q9JKV1|ADRM1_MOUSE Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1
SV=2
Length = 407
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 21 KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDC 80
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN +N P
Sbjct: 81 EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 163 GEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGG--LGLGDILKPDLIMPLIETLP 220
G S S + P++L DLQ I + + ++ P G + L +L P+++ P++
Sbjct: 249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANAD 305
Query: 221 LEQRLAPYLP 230
+++RL PYLP
Sbjct: 306 VQERLLPYLP 315
>sp|Q98SH3|ADRM1_CHICK Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2
SV=1
Length = 406
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 21 KYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDC 80
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V Q +GRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 81 EFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 131
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 175 PVKLEDLQRIFSNIGPADITEDPDGGLG----LGDILKPDLIMPLIETLPLEQRLAPYLP 230
P++L DLQ I + + P G G L +L P+++ P++ +++RL PYLP
Sbjct: 261 PIQLSDLQNILATM------NVPSGAGGQQVDLATVLTPEIMAPILANAEVQERLMPYLP 314
>sp|Q7K2G1|ADRM1_DROME Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila
melanogaster GN=CG13349 PE=1 SV=1
Length = 389
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 17 LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE 76
+EFRAG+M GK V PD RKGLV + + + GL+HF W DRT VEDD IVFP + ++
Sbjct: 18 VEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYK 77
Query: 77 KVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
+V+Q +GRVY+LKF + R+ F WMQEPK ++D + C +N +N P
Sbjct: 78 RVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125
>sp|Q9Y7Y6|YOY4_SCHPO Uncharacterized protein C342.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC342.04 PE=3 SV=1
Length = 291
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 27/228 (11%)
Query: 16 LLEFRAGKMT-FDGKKVV-PDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHE 72
L+ F+AGK+ G K++ D KG + + R +GLIHFQW R EDD IVF E
Sbjct: 3 LITFKAGKLRRVPGTKLLRADPEKGYIVMNRDAYGLIHFQWAKRNDLENPEDDIIVFSSE 62
Query: 73 AVFEKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEE 131
FEKV + + GR Y+LK+ + F WMQE + D+ +N +I +++
Sbjct: 63 CTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIK------DQDL 116
Query: 132 LD-ASVPLQVSEDMVEDDVSSRAGNLVVPN--------LGGEAISDVTSSSGPVKLEDLQ 182
LD A + DM+E D ++ + P +G ++ SS L L
Sbjct: 117 LDPARSDVATVSDMMEVDTVEQSEPIAQPTESSKESSEIGAPNSDEINSSEAVRNL--LA 174
Query: 183 RIFSNIGPADITEDPDGGLGLGDILKPDLIMPLIETLPLEQRLAPYLP 230
I + G T D L +ILKP + L+ + RL PY+P
Sbjct: 175 TISAQAGFGGSTVD------LCEILKPSNLTDLLCQEGVIDRLMPYMP 216
>sp|Q09289|ADRM1_CAEEL Proteasomal ubiquitin receptor ADRM1 homolog OS=Caenorhabditis
elegans GN=C56G2.7 PE=3 SV=2
Length = 374
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LLEFRAGKMTFDG------KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVF 69
++EF+AG+ + +KVV + +KGLV I + LIHF W DR V DD I+F
Sbjct: 18 IVEFKAGRSRLEAGSGDTMRKVVAEPKKGLVFIKQSNDMLIHFCWKDRETGAVVDDLIIF 77
Query: 70 PHEAVFEKV-NQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
P +A F+ V G+VY+LKF + D K F W+Q+ + D L V +N+P
Sbjct: 78 PDDAEFKAVPGCPDGKVYMLKFKSGDMKLF-WIQDSTPDVDKDLVKKVTDALNKP 131
>sp|Q9USM1|ADRM1_SCHPO Probable proteasomal ubiquitin receptor ADRM1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC16A11.16c PE=3 SV=1
Length = 388
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 16 LLEFRAGKMTFD-GKKVV-PDSRKGLVRIARGEHGLIHFQWLDRTR--NVVEDDQIVFPH 71
L+ +AGK+ G ++ D RKG++ + L+HF W +R R VEDD I+FP
Sbjct: 20 LVSVKAGKLQRKPGTNILQADHRKGVIYMQMASDELLHFYWKERARVSREVEDDYIIFPE 79
Query: 72 EAVFEKVNQAS-GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPL 124
EA F K+++ + GRVY LKF + + F WMQE E+D + + +N I P+
Sbjct: 80 EAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPV 133
>sp|Q556N5|ADRM1_DICDI Proteasomal ubiquitin receptor ADRM1 homolog OS=Dictyostelium
discoideum GN=adrm1-1 PE=1 SV=1
Length = 287
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 17 LEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFE 76
+EF+AGK G V DSRKG ++ GL QW R + ED+ P E+ F
Sbjct: 8 VEFKAGKAKLTGTTVTSDSRKGYLKFGVTPEGLTCVQWRPRDSSAYEDEFYFAPGESKFI 67
Query: 77 KVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQL 112
KV +GR+Y L F+ D+K F W+QE E D+++
Sbjct: 68 KVPACKTGRMYYLNFSGSDQKEFYWLQEANVEGDAKI 104
>sp|O13563|RPN13_YEAST 26S proteasome regulatory subunit RPN13 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN13 PE=1 SV=1
Length = 156
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 11 AMQEILLEFRAGKMTF--DGKKVVPDSRKGLVRIARGEH---GLIHFQWLDRTRNVVED- 64
+M +++FRAG + D + P +G + I E G F+W + V +
Sbjct: 2 SMSSTVIKFRAGVCEYNEDSRLCTPIPVQGEIEIKPNEEEELGFWDFEWRPTEKPVGREL 61
Query: 65 ---DQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQE 103
I+ P E ++ + + SGR++ L F++++R +F W+QE
Sbjct: 62 DPISLILIPGETMWVPIKSSKSGRIFALVFSSNER-YFFWLQE 103
>sp|O02151|NHR14_CAEEL Nuclear hormone receptor family member nhr-14 OS=Caenorhabditis
elegans GN=nhr-14 PE=2 SV=3
Length = 435
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 201 LGLGDILKPDLIMPLIETLPLEQRLAPYLPE 231
GLGD++K D I P IET PLE + P +P+
Sbjct: 339 FGLGDVIKRDTISPKIETPPLEMK--PMMPK 367
>sp|P81171|Y174_RICPR Uncharacterized peptidase RP174 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP174 PE=3 SV=2
Length = 722
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 76 EKVNQASGRV--YILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEEL 132
++V+ GR+ Y+L N + + +FL ++ S L S NYFIN F N +L
Sbjct: 659 QRVHPWHGRIFEYVLAQNPNTKTYFLESRDSGHSSGSDLKESANYFINLYTFFANTLKL 717
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,441,136
Number of Sequences: 539616
Number of extensions: 3922747
Number of successful extensions: 10161
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10109
Number of HSP's gapped (non-prelim): 33
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)