Query 026728
Match_columns 234
No_of_seqs 151 out of 235
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3037 Cell membrane glycopro 100.0 1.9E-60 4.2E-65 429.7 17.4 225 6-233 2-255 (330)
2 PF04683 Proteasom_Rpn13: Prot 100.0 2E-40 4.3E-45 251.8 11.3 83 22-104 1-85 (85)
3 COG3128 PiuC Uncharacterized i 47.3 15 0.00032 32.5 2.3 34 63-106 150-184 (229)
4 PF06880 DUF1262: Protein of u 39.9 1.7E+02 0.0038 23.2 7.0 55 35-90 3-81 (104)
5 cd01230 PH_EFA6 EFA6 Pleckstri 38.4 2E+02 0.0044 22.8 9.6 46 74-122 68-113 (117)
6 PF13897 GOLD_2: Golgi-dynamic 36.7 31 0.00067 28.7 2.5 19 82-100 109-132 (136)
7 TIGR01204 bioW 6-carboxyhexano 36.2 1.1E+02 0.0024 27.6 6.1 18 22-39 105-125 (232)
8 COG1111 MPH1 ERCC4-like helica 33.9 18 0.0004 36.1 0.9 35 61-100 441-489 (542)
9 PF08410 DUF1737: Domain of un 33.4 31 0.00067 24.2 1.7 17 107-123 12-28 (54)
10 PTZ00283 serine/threonine prot 33.1 56 0.0012 31.7 4.1 36 83-121 455-490 (496)
11 PF14008 Metallophos_C: Iron/z 30.6 88 0.0019 21.7 3.7 34 32-65 28-61 (62)
12 PRK15195 fimbrial chaperone pr 27.7 4.3E+02 0.0093 23.3 9.7 78 21-102 25-110 (229)
13 PRK13284 flagellar assembly pr 27.1 76 0.0017 26.3 3.4 40 63-107 15-56 (145)
14 PF14913 DPCD: DPCD protein fa 25.7 2.1E+02 0.0046 25.1 5.9 44 47-101 93-136 (194)
15 PF12101 DUF3577: Protein of u 25.7 74 0.0016 26.5 3.0 51 8-59 73-123 (137)
16 PF02757 YLP: YLP motif; Inte 24.9 39 0.00085 15.6 0.7 7 227-233 3-9 (9)
17 PF11191 DUF2782: Protein of u 24.7 97 0.0021 23.9 3.4 43 63-108 38-82 (105)
18 PRK13285 flagellar assembly pr 24.6 92 0.002 25.9 3.4 39 62-106 14-53 (148)
19 PF14977 FAM194: FAM194 protei 24.0 1.6E+02 0.0034 26.1 4.9 41 66-108 18-58 (208)
20 PRK15188 fimbrial chaperone pr 23.9 5.1E+02 0.011 23.0 10.0 77 23-102 28-112 (228)
21 cd01253 PH_beta_spectrin Beta- 23.7 3.1E+02 0.0067 20.3 7.7 44 72-118 58-103 (104)
22 PF10504 DUF2452: Protein of u 23.2 78 0.0017 27.0 2.7 29 67-98 80-108 (159)
23 PF13919 ASXH: Asx homology do 21.7 25 0.00054 29.0 -0.5 32 199-232 31-62 (138)
24 PRK13662 hypothetical protein; 21.6 3.3E+02 0.0071 23.4 6.3 43 43-88 15-57 (177)
25 PF07933 DUF1681: Protein of u 21.1 2.1E+02 0.0046 24.4 4.9 59 37-99 39-100 (160)
26 PF00626 Gelsolin: Gelsolin re 20.4 2.6E+02 0.0057 19.1 4.7 32 81-115 16-47 (76)
27 KOG3132 m3G-cap-specific nucle 20.4 28 0.00061 32.0 -0.5 33 72-107 172-213 (325)
28 PHA00691 hypothetical protein 20.1 95 0.0021 22.3 2.2 11 81-91 11-21 (68)
No 1
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=100.00 E-value=1.9e-60 Score=429.69 Aligned_cols=225 Identities=40% Similarity=0.664 Sum_probs=169.3
Q ss_pred CCcCCCCCceeEEEeceeeEecC--CceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEecc-CC
Q 026728 6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS 82 (234)
Q Consensus 6 ~~~~~~~~~~li~FkAGk~~~~g--~~V~pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~-~t 82 (234)
.+.++.++.+|||||||||.+.| ++|+||+|||+|||.+++||||||||++|+++.||||+||||+|++|+||++ ||
T Consensus 2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t 81 (330)
T KOG3037|consen 2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT 81 (330)
T ss_pred ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence 34567899999999999999998 9999999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcCCccccc-----ccccccCCC----ccccc-----------
Q 026728 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVN-----EEELDASVP----LQVSE----------- 142 (234)
Q Consensus 83 GRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~kin~~l~~~~~~~~-----~~~~~~~~~----~~~~~----------- 142 (234)
||||+|||+|++|||||||||+++++|+++|+|||++||+|+.... ........+ +++..
T Consensus 82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~ 161 (330)
T KOG3037|consen 82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL 161 (330)
T ss_pred CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence 9999999999999999999999999999999999999999973321 000000000 00000
Q ss_pred ------ccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHhhcCCCCCCCCCCCCCCccccCCcCcchhhh
Q 026728 143 ------DMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLI 216 (234)
Q Consensus 143 ------~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lq~iLs~lg~~~~~~~~~~~~~L~dvLtpe~l~pll 216 (234)
.......++.++++..+++.+ ......++..+...+++++.++.+.++.+.+ ...++|++||+||++.++|
T Consensus 162 ~~e~l~~~~~s~~~s~~~~~~~~t~es-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--~~~vdLa~vL~~e~v~~vl 238 (330)
T KOG3037|consen 162 TVEQLNSLAESNESSLPGNSVPQTPES-SVSGPESPSEPNKEEDVSNSLSTLSPQIGFG--ASTVDLATVLKPEAVAPVL 238 (330)
T ss_pred hHhhhcccccCccccccccccccCccc-cccCCCCCCccccchhhcccccCCchhccCC--ccceehhhhcChHHHHHHh
Confidence 000000001111111111100 0111122244566788999999886533221 2369999999999999999
Q ss_pred cCcchHHhhccCCCCCC
Q 026728 217 ETLPLEQRLAPYLPERS 233 (234)
Q Consensus 217 ~~~~~~~~L~~~LP~~~ 233 (234)
+++.++++|++|||++|
T Consensus 239 ~~~~v~erL~phlP~d~ 255 (330)
T KOG3037|consen 239 ANPGVQERLMPHLPSDH 255 (330)
T ss_pred hCcchhhhhcccCCCCC
Confidence 99999999999999986
No 2
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=100.00 E-value=2e-40 Score=251.84 Aligned_cols=83 Identities=55% Similarity=1.058 Sum_probs=71.7
Q ss_pred eeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEE
Q 026728 22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL 99 (234)
Q Consensus 22 Gk~~~~g~~V~pd~rKG~l~l~~~~d~l~hf~W~~R~~-~~~Edd~ii~Pgd~~f~~V~~-~tGRVyvLkF~ss~~r~fF 99 (234)
|||+++|++|+||+|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|++||||
T Consensus 1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF 80 (85)
T PF04683_consen 1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF 80 (85)
T ss_dssp EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence 89999999999999999999999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred EccCC
Q 026728 100 WMQEP 104 (234)
Q Consensus 100 WmQe~ 104 (234)
|||||
T Consensus 81 WmQe~ 85 (85)
T PF04683_consen 81 WMQEP 85 (85)
T ss_dssp EE-SS
T ss_pred EecCC
Confidence 99996
No 3
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=47.29 E-value=15 Score=32.54 Aligned_cols=34 Identities=21% Similarity=0.583 Sum_probs=25.2
Q ss_pred ccceEeeCCceEEEEecc-CCCeEEEEEEcCCCceeEEEccCCCc
Q 026728 63 EDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (234)
Q Consensus 63 Edd~ii~Pgd~~f~~V~~-~tGRVyvLkF~ss~~r~fFWmQe~~~ 106 (234)
--|+|++|+.. ..+|.+ |-|+=|. .|||.|+---
T Consensus 150 AGdLVlypStS-lH~VtPVTRg~R~a---------sffW~qslir 184 (229)
T COG3128 150 AGDLVLYPSTS-LHEVTPVTRGERFA---------SFFWIQSLIR 184 (229)
T ss_pred CCCEEEccccc-ceeccccccCceEE---------EeeehHHHhh
Confidence 46999999954 788888 7675333 5999998653
No 4
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.
Probab=39.87 E-value=1.7e+02 Score=23.23 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCCcEEEEEeCCCCceE--EEEeeCCCCCc-------------------ccceEeeCCceEEEEec-c--CCCeEEEEEE
Q 026728 35 SRKGLVRIARGEHGLIH--FQWLDRTRNVV-------------------EDDQIVFPHEAVFEKVN-Q--ASGRVYILKF 90 (234)
Q Consensus 35 ~rKG~l~l~~~~d~l~h--f~W~~R~~~~~-------------------Edd~ii~Pgd~~f~~V~-~--~tGRVyvLkF 90 (234)
|--|+|.|. +|+.-.. .||.-.....+ .++-....+.+-|.+|. | .++|-|+++=
T Consensus 3 PnSG~LVIq-Dee~~~~~t~CfG~c~~~~v~~LPFPQN~~Ltv~~~~~~~~~~~t~~d~V~FIPVl~QPLSSnrYYvi~~ 81 (104)
T PF06880_consen 3 PNSGYLVIQ-DEEAETTETCCFGLCKDTRVRGLPFPQNKNLTVRYSSGHGENTTTYSDPVVFIPVLNQPLSSNRYYVIRR 81 (104)
T ss_pred CCceEEEEE-ccccCccccEEeeEcCCCccccCCCCCCCEEEEEEccCCCccceeecccEEEEEcCCCcCcCCcEEEEEe
Confidence 446888885 4555555 88866432111 12223336788899995 3 7899999985
No 5
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.37 E-value=2e+02 Score=22.84 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=28.3
Q ss_pred EEEEeccCCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhcC
Q 026728 74 VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (234)
Q Consensus 74 ~f~~V~~~tGRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~kin~~l~~ 122 (234)
+-.....+--.||.|+-. +++-|+| |-++.+.=..|+.+||...+.
T Consensus 68 ~ia~dy~Kr~~VF~L~~~-~g~~~lf--qA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 68 TRASDYSKKPHVFRLRTA-DWREFLF--QTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred EeeccccCCCcEEEEEcC-CCCEEEE--ECCCHHHHHHHHHHHHHHHHh
Confidence 333333344455555542 3455554 888888778999999987653
No 6
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=36.70 E-value=31 Score=28.69 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=13.4
Q ss_pred CCeEEEEEEcCC-----CceeEEE
Q 026728 82 SGRVYILKFNTD-----DRKFFLW 100 (234)
Q Consensus 82 tGRVyvLkF~ss-----~~r~fFW 100 (234)
.--||+|||.+| +++.+|.
T Consensus 109 ~~GvYvLkFDNSYS~~rsK~l~Y~ 132 (136)
T PF13897_consen 109 GPGVYVLKFDNSYSWFRSKKLYYR 132 (136)
T ss_pred CCeEEEEEeeCcceeEEeeEEEEE
Confidence 346999999775 4566665
No 7
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=36.16 E-value=1.1e+02 Score=27.63 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=14.1
Q ss_pred eeeEec---CCceeecCCCcE
Q 026728 22 GKMTFD---GKKVVPDSRKGL 39 (234)
Q Consensus 22 Gk~~~~---g~~V~pd~rKG~ 39 (234)
|-|.++ |.++.||..||.
T Consensus 105 GA~llda~tG~RLe~d~~RGV 125 (232)
T TIGR01204 105 GAVLMDIETGERLDEDKEKGV 125 (232)
T ss_pred ceEEEecCCCccccCCCCcce
Confidence 556666 889999999985
No 8
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=33.91 E-value=18 Score=36.14 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=24.4
Q ss_pred CcccceEeeCCceEEEEec--------------cCCCeEEEEEEcCCCceeEEE
Q 026728 61 VVEDDQIVFPHEAVFEKVN--------------QASGRVYILKFNTDDRKFFLW 100 (234)
Q Consensus 61 ~~Edd~ii~Pgd~~f~~V~--------------~~tGRVyvLkF~ss~~r~fFW 100 (234)
..|-|+||| +.+|+ +..||||+|-+..+..-..||
T Consensus 441 Ip~vDlVif-----YEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 441 IPEVDLVIF-----YEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred CCcccEEEE-----ecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHHHH
Confidence 357899999 66776 367999999996533333444
No 9
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=33.43 E-value=31 Score=24.24 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHhcCC
Q 026728 107 EEDSQLCNSVNYFINRP 123 (234)
Q Consensus 107 ~~D~~~~~kin~~l~~~ 123 (234)
..|.+||.||++.|+..
T Consensus 12 ~d~~~fc~rVt~aL~~G 28 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEG 28 (54)
T ss_pred CChHHHHHHHHHHHHcC
Confidence 45789999999999974
No 10
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=33.09 E-value=56 Score=31.68 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHHHhc
Q 026728 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (234)
Q Consensus 83 GRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~kin~~l~ 121 (234)
--||+|+|+. +++ ||.|..+.+.-+.|+.+|++.|.
T Consensus 455 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKT-GRR--LLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecC-CcE--EEEecCCchhHHHHHHHHHHhcC
Confidence 4799999964 554 68899999888899999999885
No 11
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=30.57 E-value=88 Score=21.71 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred eecCCCcEEEEEeCCCCceEEEEeeCCCCCcccc
Q 026728 32 VPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDD 65 (234)
Q Consensus 32 ~pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~Edd 65 (234)
.-+..-|+.+|..-....++|+|..-+++.+-|+
T Consensus 28 ~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~ 61 (62)
T PF14008_consen 28 FRDSEYGYGRLTVANATHLHWEFIRSDDGSVLDE 61 (62)
T ss_dssp EEE---EEEEEEE-SSSEEEEEEEETTS-T-CEE
T ss_pred eeccccCEEEEEEEcCCeEEEEEEECCCCcEecC
Confidence 3456789999976577899999988777766554
No 12
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=27.73 E-value=4.3e+02 Score=23.33 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=43.3
Q ss_pred ceeeEecCCceeecC-CC-cEEEEEeCC-C-CceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcC----
Q 026728 21 AGKMTFDGKKVVPDS-RK-GLVRIARGE-H-GLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT---- 92 (234)
Q Consensus 21 AGk~~~~g~~V~pd~-rK-G~l~l~~~~-d-~l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~~tGRVyvLkF~s---- 92 (234)
|| ..+++++|.=.. .| -.|.|...+ + -.+-..|.+...+..+.+||+.|- +-|++........+....
T Consensus 25 Ag-i~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPP---lfrl~p~~~q~lRIi~~~~~LP 100 (229)
T PRK15195 25 GG-IALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPP---LFVSEPKSENTLRIIYAGPPLA 100 (229)
T ss_pred ee-EEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 55 557777654333 33 344554433 3 255566997544434468999998 777876333222222222
Q ss_pred CCceeEEEcc
Q 026728 93 DDRKFFLWMQ 102 (234)
Q Consensus 93 s~~r~fFWmQ 102 (234)
.++-..|||=
T Consensus 101 ~DrESlf~Ln 110 (229)
T PRK15195 101 ADRESLFWMN 110 (229)
T ss_pred CCeeEEEEEE
Confidence 2466889973
No 13
>PRK13284 flagellar assembly protein FliW; Provisional
Probab=27.14 E-value=76 Score=26.34 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=23.9
Q ss_pred ccceEeeCCce-EEEEeccCCCeEEEEEEcCC-CceeEEEccCCCch
Q 026728 63 EDDQIVFPHEA-VFEKVNQASGRVYILKFNTD-DRKFFLWMQEPKAE 107 (234)
Q Consensus 63 Edd~ii~Pgd~-~f~~V~~~tGRVyvLkF~ss-~~r~fFWmQe~~~~ 107 (234)
|+++|-||.-. =|.. =|=|+|..... ...-|||||+-+..
T Consensus 15 e~~ii~Fp~Gi~GFe~-----~k~F~L~~~~~~~~~~f~~LQS~dd~ 56 (145)
T PRK13284 15 PEKVITFPAGLPGFED-----CKRFKLFHEEGPPEPTVFWLQSLDDP 56 (145)
T ss_pred ccceEECCCCCCCCCc-----ccEEEEEecccCCCCCEEEEEeCCCC
Confidence 56777776532 2332 34566665322 24679999998763
No 14
>PF14913 DPCD: DPCD protein family
Probab=25.73 E-value=2.1e+02 Score=25.15 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=28.5
Q ss_pred CCceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcCCCceeEEEc
Q 026728 47 HGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWM 101 (234)
Q Consensus 47 d~l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~~tGRVyvLkF~ss~~r~fFWm 101 (234)
|.-..|+||=|.-.. |-|+..+.|+. +.|..+++ .++++||==+
T Consensus 93 dTk~~fqWRIRNLPY--------P~dvYsVtvd~-~~r~ivvR--TtNKKYyKk~ 136 (194)
T PF14913_consen 93 DTKTSFQWRIRNLPY--------PKDVYSVTVDE-DERCIVVR--TTNKKYYKKF 136 (194)
T ss_pred cCccceEEEEccCCC--------CccceEEEEcC-CCcEEEEE--CcCccceeEe
Confidence 556679999998764 44455556655 45776666 4677777433
No 15
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=25.68 E-value=74 Score=26.47 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=39.6
Q ss_pred cCCCCCceeEEEeceeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC
Q 026728 8 ASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR 59 (234)
Q Consensus 8 ~~~~~~~~li~FkAGk~~~~g~~V~pd~rKG~l~l~~~~d~l~hf~W~~R~~ 59 (234)
+....++.||.||.|-+..+-.+.+--.++|.-.+.. ...|+++.|...+.
T Consensus 73 av~~~~KVli~FrlgDl~~d~f~~~~G~~~Ge~g~sL-KgRLl~i~~iKVdg 123 (137)
T PF12101_consen 73 AVDEDKKVLIGFRLGDLWADTFTYKKGERAGEPGASL-KGRLLKIKWIKVDG 123 (137)
T ss_pred hcccCCcEEEEEEecCCceeeEEeccCCcCCccceee-EEEEEEEEEEEECC
Confidence 4567889999999999988876666678888776644 35799999976554
No 16
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=24.85 E-value=39 Score=15.61 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=4.8
Q ss_pred cCCCCCC
Q 026728 227 PYLPERS 233 (234)
Q Consensus 227 ~~LP~~~ 233 (234)
+||||.+
T Consensus 3 eYLpP~~ 9 (9)
T PF02757_consen 3 EYLPPVE 9 (9)
T ss_pred cccCCCC
Confidence 5888753
No 17
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=24.74 E-value=97 Score=23.94 Aligned_cols=43 Identities=12% Similarity=0.400 Sum_probs=27.4
Q ss_pred ccceEeeCCceEEEEecc--CCCeEEEEEEcCCCceeEEEccCCCchh
Q 026728 63 EDDQIVFPHEAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEE 108 (234)
Q Consensus 63 Edd~ii~Pgd~~f~~V~~--~tGRVyvLkF~ss~~r~fFWmQe~~~~~ 108 (234)
|-+.+|..++. .+|.+ -+|++|.+|..-..- .=|+|.+++.++
T Consensus 38 ~pevti~~~~~--~~ieEyRv~G~l~~IkV~P~~G-~~Yyl~d~dg~g 82 (105)
T PF11191_consen 38 EPEVTIIEDGG--STIEEYRVNGQLYMIKVQPKAG-PPYYLVDPDGDG 82 (105)
T ss_pred CCCEEEEecCC--cEEEEEEECCeEeeEEEEeCCC-CCEEEECCCCCC
Confidence 34454444433 45544 589999999964322 778888887753
No 18
>PRK13285 flagellar assembly protein FliW; Provisional
Probab=24.60 E-value=92 Score=25.86 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=22.4
Q ss_pred cccceEeeCCce-EEEEeccCCCeEEEEEEcCCCceeEEEccCCCc
Q 026728 62 VEDDQIVFPHEA-VFEKVNQASGRVYILKFNTDDRKFFLWMQEPKA 106 (234)
Q Consensus 62 ~Edd~ii~Pgd~-~f~~V~~~tGRVyvLkF~ss~~r~fFWmQe~~~ 106 (234)
.|+++|-||.-. =|.. =|=|+|.- -....-|||||+-+.
T Consensus 14 ~e~~ii~Fp~Gi~GFe~-----~~~f~L~~-~~~~~pf~~LqS~dd 53 (148)
T PRK13285 14 DEEDIITFPEGIPGFED-----LKKFILLP-LEEDSPFLWLQSVED 53 (148)
T ss_pred ChhceEECCCCCCCCCc-----ccEEEEEe-cCCCCCEEEEEecCC
Confidence 356777776532 2332 24455553 224467999998765
No 19
>PF14977 FAM194: FAM194 protein
Probab=23.99 E-value=1.6e+02 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=33.4
Q ss_pred eEeeCCceEEEEeccCCCeEEEEEEcCCCceeEEEccCCCchh
Q 026728 66 QIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEE 108 (234)
Q Consensus 66 ~ii~Pgd~~f~~V~~~tGRVyvLkF~ss~~r~fFWmQe~~~~~ 108 (234)
.++||+-.-|.-++. |+|-++....-..++-||.||-+.+.
T Consensus 18 ~~~f~DGsg~i~YPS--GnlAi~~~~~~~~~~~~~v~eD~~~~ 58 (208)
T PF14977_consen 18 HYMFPDGSGQIFYPS--GNLAICISPTCRGGFTYIVYEDSPEN 58 (208)
T ss_pred EEEcCCCCEEEEeCC--CCEEEEEeccCCCceEEEEEecCCCC
Confidence 478999898988875 99999998765556889999887754
No 20
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=23.95 E-value=5.1e+02 Score=22.96 Aligned_cols=77 Identities=12% Similarity=0.317 Sum_probs=45.9
Q ss_pred eeEecCCce-eecC-CCcEEEEEeCC-CC-ceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEEEEcC----CC
Q 026728 23 KMTFDGKKV-VPDS-RKGLVRIARGE-HG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT----DD 94 (234)
Q Consensus 23 k~~~~g~~V-~pd~-rKG~l~l~~~~-d~-l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~~tGRVyvLkF~s----s~ 94 (234)
-..+++++| -+.. +-..|.|...+ +. .+--.|.+...+....+||+.|- ..|++...+++..+.+.. .+
T Consensus 28 gi~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPP---lfrl~~~~~~~lRI~~~~~~lP~D 104 (228)
T PRK15188 28 GIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP---LFVIQPKKENILRIMYVGPSLPTD 104 (228)
T ss_pred eEEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCCCC
Confidence 356777665 3333 33455665543 32 45567997554444467999998 778877445444444433 35
Q ss_pred ceeEEEcc
Q 026728 95 RKFFLWMQ 102 (234)
Q Consensus 95 ~r~fFWmQ 102 (234)
+-..||+=
T Consensus 105 RESlf~ln 112 (228)
T PRK15188 105 RESVFYLN 112 (228)
T ss_pred ceEEEEEE
Confidence 66889973
No 21
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.68 E-value=3.1e+02 Score=20.29 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHHHHH
Q 026728 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNY 118 (234)
Q Consensus 72 d~~f~~V~~--~tGRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~kin~ 118 (234)
.++...++. +.-.||.|+.. ..-.|++|-.+.+.=.+|+..|+.
T Consensus 58 ~~~i~~~~~~~k~~~~F~l~~~---~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 58 GAQCEVASDYTKKKHVFRLRLP---DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCEEEecCCcccCceEEEEEec---CCCEEEEECCCHHHHHHHHHHHhc
Confidence 444445433 22356666642 225568999988877788888763
No 22
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=23.24 E-value=78 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=21.8
Q ss_pred EeeCCceEEEEeccCCCeEEEEEEcCCCceeE
Q 026728 67 IVFPHEAVFEKVNQASGRVYILKFNTDDRKFF 98 (234)
Q Consensus 67 ii~Pgd~~f~~V~~~tGRVyvLkF~ss~~r~f 98 (234)
.|---.+.|++|+ |.+|.|=...++++||
T Consensus 80 ~l~~A~cnF~pip---G~iYhLY~r~~G~~yl 108 (159)
T PF10504_consen 80 ELHHAKCNFEPIP---GQIYHLYRRENGQDYL 108 (159)
T ss_pred HHhhcccCceecC---CCEEEEEECCCCCEEE
Confidence 3444567788886 8999999987777766
No 23
>PF13919 ASXH: Asx homology domain
Probab=21.73 E-value=25 Score=29.01 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred CCCCccccCCcCcchhhhcCcchHHhhccCCCCC
Q 026728 199 GGLGLGDILKPDLIMPLIETLPLEQRLAPYLPER 232 (234)
Q Consensus 199 ~~~~L~dvLtpe~l~pll~~~~~~~~L~~~LP~~ 232 (234)
..++|.+|+++++- .+| +++.+++|+.+||+-
T Consensus 31 ~~~dLr~L~N~~tw-~~L-~~eeq~eLl~LLP~~ 62 (138)
T PF13919_consen 31 VNADLRALLNPETW-SCL-PEEEQQELLKLLPEV 62 (138)
T ss_pred cccCHHHHhCHHHH-hcC-CHHHHHHHHHhCCCC
Confidence 34667777777666 444 344578888888874
No 24
>PRK13662 hypothetical protein; Provisional
Probab=21.57 E-value=3.3e+02 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=28.6
Q ss_pred EeCCCCceEEEEeeCCCCCcccceEeeCCceEEEEeccCCCeEEEE
Q 026728 43 ARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYIL 88 (234)
Q Consensus 43 ~~~~d~l~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~~tGRVyvL 88 (234)
++ =||-+|-+|..+.-....+.+++.-.+-++... .+||.++-
T Consensus 15 yK-~dG~lHr~w~~~~v~~~~~~~~v~~~~~t~v~e--~dG~~Wv~ 57 (177)
T PRK13662 15 YK-HDGSLHRTWRDTMVLKTTENAVIGGNDHTLVTE--SDGRRWVT 57 (177)
T ss_pred EE-eCCeEEEEEEcCEEEEccCCeEEEECCcEEEEe--CCCceEEe
Confidence 44 588999999988765555555555454555444 46888775
No 25
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=21.06 E-value=2.1e+02 Score=24.36 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=26.0
Q ss_pred CcEEEEEeCCCCc-eEEEEeeCCCCCcccceEeeCCceEEEEecc--CCCeEEEEEEcCCCceeEE
Q 026728 37 KGLVRIARGEHGL-IHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ--ASGRVYILKFNTDDRKFFL 99 (234)
Q Consensus 37 KG~l~l~~~~d~l-~hf~W~~R~~~~~Edd~ii~Pgd~~f~~V~~--~tGRVyvLkF~ss~~r~fF 99 (234)
.|-|+|....+.+ +.+.-.+..++.. |.-.|-+.. .-|++ .+.|-|||+..+.+-||-|
T Consensus 39 tGrlrV~~~g~~~~v~i~leD~~tgeL---FA~~P~~~~-~~VE~v~DSSRYFvlRv~d~~Gr~Af 100 (160)
T PF07933_consen 39 TGRLRVVEKGDKCKVDIRLEDPSTGEL---FAQCPYDDY-AAVEPVIDSSRYFVLRVQDPSGRHAF 100 (160)
T ss_dssp EEEEEEE--SSSE--EEEEE-SS--SS----EEEEE-SS---EEE-TT--S-EEEEEEETTTEEEE
T ss_pred eeEEEEEEcCCeeEEEEEecCCCCcce---EEECcccCC-CceEEeecccceEEEEEEcCCCcEEE
Confidence 4666666544443 3555566666532 222333322 44555 4689999999776445444
No 26
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=20.45 E-value=2.6e+02 Score=19.12 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=23.4
Q ss_pred CCCeEEEEEEcCCCceeEEEccCCCchhhHHHHHH
Q 026728 81 ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNS 115 (234)
Q Consensus 81 ~tGRVyvLkF~ss~~r~fFWmQe~~~~~D~~~~~k 115 (234)
.++.||+|.. +...|.|+=..........+..
T Consensus 16 ~s~~~yIld~---~~~i~vW~G~~~~~~e~~~a~~ 47 (76)
T PF00626_consen 16 NSDDCYILDC---GYEIFVWVGKKSSPEEKAFAAQ 47 (76)
T ss_dssp ETTSEEEEEE---SSEEEEEEHTTSHHHHHHHHHH
T ss_pred CCCCEEEEEe---CCCcEEEEeccCCHHHHHHHHH
Confidence 5789999998 4599999988865444444443
No 27
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=20.35 E-value=28 Score=32.04 Aligned_cols=33 Identities=27% Similarity=0.612 Sum_probs=22.3
Q ss_pred ceEEEEeccCCCeEEEEEE---------cCCCceeEEEccCCCch
Q 026728 72 EAVFEKVNQASGRVYILKF---------NTDDRKFFLWMQEPKAE 107 (234)
Q Consensus 72 d~~f~~V~~~tGRVyvLkF---------~ss~~r~fFWmQe~~~~ 107 (234)
||.|..++| --|||.. .+.....|||||++=.+
T Consensus 172 DCIy~esnQ---TYYVlD~~cWrgh~~yec~~dFRffwl~SKL~E 213 (325)
T KOG3132|consen 172 DCIYHESNQ---TYYVLDMVCWRGHSLYECTSDFRFFWLQSKLAE 213 (325)
T ss_pred eeeecccCc---eEEEEEEEeecCcccccCchHHHHHHHhhhccc
Confidence 566766665 3667763 33456789999998764
No 28
>PHA00691 hypothetical protein
Probab=20.09 E-value=95 Score=22.35 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=9.2
Q ss_pred CCCeEEEEEEc
Q 026728 81 ASGRVYILKFN 91 (234)
Q Consensus 81 ~tGRVyvLkF~ 91 (234)
.+|||+|||-+
T Consensus 11 ENGr~WVL~K~ 21 (68)
T PHA00691 11 ENGRVWVLKKS 21 (68)
T ss_pred cCCeEEEEEeC
Confidence 68999999943
Done!