BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026729
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/218 (87%), Positives = 202/218 (92%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCL 220
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++ L
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 220
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/218 (87%), Positives = 202/218 (92%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCL 220
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++ L
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 219
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/218 (86%), Positives = 202/218 (92%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+D+YASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCL 220
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWK++ L
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 219
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 149/215 (69%), Gaps = 4/215 (1%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
+ +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D++T+VL
Sbjct: 25 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 84
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIR 125
G ++SMPI + TAMQ+MAH +GE GT M LSSW+TSS+EEVA GP +R
Sbjct: 85 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 144
Query: 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185
+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L +KNF+
Sbjct: 145 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 204
Query: 186 GLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKNI 217
L E N DSGLAAYVA ID S+SW++I
Sbjct: 205 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDI 239
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 149/215 (69%), Gaps = 4/215 (1%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
+ +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D++T+VL
Sbjct: 30 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 89
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIR 125
G ++SMPI + TAMQ+MAH +GE GT M LSSW+TSS+EEVA GP +R
Sbjct: 90 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 149
Query: 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185
+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L +KNF+
Sbjct: 150 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 209
Query: 186 GLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKNI 217
L E N DSGLAAYVA ID S+SW++I
Sbjct: 210 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDI 244
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 149/215 (69%), Gaps = 4/215 (1%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
+ +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D++T+VL
Sbjct: 8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIR 125
G ++SMPI + TAMQ+MAH +GE GT M LSSW+TSS+EEVA GP +R
Sbjct: 68 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 127
Query: 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185
+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L +KNF+
Sbjct: 128 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 187
Query: 186 GLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKNI 217
L E N DSGLAAYVA ID S+SW++I
Sbjct: 188 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDI 222
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 131/212 (61%), Gaps = 1/212 (0%)
Query: 6 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTV 65
NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 66 LGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIR 125
LG + SMP++I PTA+ P+G+ G LS+ S S+E++A G
Sbjct: 67 LGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185
+FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKNF+
Sbjct: 127 WFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE 185
Query: 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
G+DLGKMD+AN AA ++ Q+D S +W+ +
Sbjct: 186 GIDLGKMDKANLEMQAALMSRQMDASFNWEAL 217
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 130/212 (61%), Gaps = 1/212 (0%)
Query: 6 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTV 65
NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 66 LGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIR 125
LG + SMP++I PT + P+G+ G LS+ S S+E++A G
Sbjct: 67 LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185
+FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKNF+
Sbjct: 127 WFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE 185
Query: 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
G+DLGKMD+AN AA ++ Q+D S +W+ +
Sbjct: 186 GIDLGKMDKANLEMQAALMSRQMDASFNWEAL 217
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 173 bits (439), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/96 (87%), Positives = 86/96 (89%)
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTG 121
TT+LGFKISMPIMIAPTAMQKMAHPEGEY GTIMTLSSW+TSSVEEVASTG
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157
PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV
Sbjct: 61 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 96
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 18 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 77
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I TL+S S +
Sbjct: 78 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 137
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG++E D+K +F+
Sbjct: 138 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKFS 197
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T F+ + ++E+ G + ++ ID SL+WK+I
Sbjct: 198 ----NTKAGFKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 234
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I TL+S S +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 299 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 335
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I TL+S S +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 299 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 335
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 114 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 173
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I TL+S S +
Sbjct: 174 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 233
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 234 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 293
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 294 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 330
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 139 bits (351), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 20 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 79
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I TL+S S +
Sbjct: 80 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 139
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 140 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 199
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 200 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 236
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + +Y+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I TL+S S +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 299 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 335
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P EGE T I T +S S +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 299 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 335
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 183 NFQGL 187
+ + L
Sbjct: 182 DLRAL 186
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 12/223 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSV 114
++T +LG + +P ++ T + K+ +P EGE T I T +S S +
Sbjct: 179 ISTDMLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNI 217
T + + ++E+ G + ++ ID SL+WK+I
Sbjct: 299 ----NTKAGPKAMKKTNVEESQ--GASRALSKFIDPSLTWKDI 335
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL 175
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNL 174
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 18 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 77
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVA-STG 121
T +LG KI P ++AP A +AH E GTIM++S++S ++ EE++
Sbjct: 78 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 137
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P
Sbjct: 138 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 18 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 77
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVA-STG 121
T +LG KI P ++AP A +AH E GTIM++S++S ++ EE++
Sbjct: 78 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 137
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P
Sbjct: 138 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVA-STG 121
T +LG KI P ++AP A +AH E GTIM++S++S ++ EE++
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 186
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184
R +V +++ R ER G+K +AL + P + + K+ + P F L +
Sbjct: 17 RGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKY 66
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 118 ASTGPGIRFFQLYVYKD---RNVVAQLVRRAERAGFKAIALTV 157
A TG R F L V D R +V ++VRR ER GFK +AL +
Sbjct: 16 ACTGAHERTF-LAVKPDGVQRRLVGEIVRRFERKGFKLVALKL 57
>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
Length = 261
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 150 FKAIALTVDTPRLGRREADIKNRF--TLPPFLTLKNFQGLDLGKMDE 194
K + +V T L R+ AD++N T PPF+T + D+ K++E
Sbjct: 47 LKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEE 93
>pdb|2AHE|A Chain A, Crystal Structure Of A Soluble Form Of Clic4.
Intercellular Chloride Ion Channel
Length = 267
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 150 FKAIALTVDTPRLGRREADIKNRF--TLPPFLTLKNFQGLDLGKMDE 194
K + +V T L R+ AD++N T PPF+T + D+ K++E
Sbjct: 47 LKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEE 93
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 111 TSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 170
TS++EE+A Q V + + + + + GF A+ + L EA++
Sbjct: 131 TSNIEEMAR--------QFIVGETTKEAVKNLEKLRKDGFAAVVDVLGEATLSEEEAEVY 182
Query: 171 NRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV 230
L LK QG G + D GL A +++ ++ + CL FE V
Sbjct: 183 TNTYLELLEALKKEQGSWKGLPGKGGDPGLDWGHAPKVNIAVKPTALFCLANPQDFEGSV 242
Query: 231 M 231
+
Sbjct: 243 V 243
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 149 GFKAIALTVDTPRL---GRREADIKNRFTLPP 177
G K T+D PR G EAD+K+ F +PP
Sbjct: 409 GAKVRLATIDRPRFTQWGETEADVKDGFVVPP 440
>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer
Length = 157
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+++ Q VY + A+L + G + + V + G+RE + N K
Sbjct: 18 VQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKA 77
Query: 184 FQGLDLGKMDEANDSGLAAYV 204
G + K+++AND Y+
Sbjct: 78 LFGKEADKLEQANDDDKTYYI 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,266,188
Number of Sequences: 62578
Number of extensions: 228942
Number of successful extensions: 691
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 30
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)