Query 026729
Match_columns 234
No_of_seqs 188 out of 1401
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 4.6E-76 1E-80 521.9 18.7 228 4-231 1-229 (363)
2 PLN02493 probable peroxisomal 100.0 5E-71 1.1E-75 508.5 21.7 229 3-231 2-230 (367)
3 PRK11197 lldD L-lactate dehydr 100.0 5.6E-69 1.2E-73 497.3 20.6 228 3-231 2-251 (381)
4 PLN02535 glycolate oxidase 100.0 2E-68 4.3E-73 491.5 21.4 227 2-231 3-229 (364)
5 cd04736 MDH_FMN Mandelate dehy 100.0 9.1E-68 2E-72 486.3 19.7 222 8-230 1-241 (361)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.2E-65 2.6E-70 475.7 21.1 227 4-231 18-259 (383)
7 TIGR02708 L_lactate_ox L-lacta 100.0 1.9E-65 4.1E-70 471.9 20.2 222 3-231 12-234 (367)
8 cd04737 LOX_like_FMN L-Lactate 100.0 6.1E-64 1.3E-68 460.4 19.4 223 3-231 4-227 (351)
9 cd02922 FCB2_FMN Flavocytochro 100.0 5.6E-61 1.2E-65 440.2 20.9 217 8-231 1-219 (344)
10 PF01070 FMN_dh: FMN-dependent 100.0 1.5E-58 3.3E-63 425.9 16.7 218 14-231 1-231 (356)
11 PLN02979 glycolate oxidase 100.0 8.1E-55 1.8E-59 399.2 17.2 187 45-231 43-229 (366)
12 COG1304 idi Isopentenyl diphos 100.0 4E-45 8.6E-50 336.5 13.5 219 7-230 1-223 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 9.9E-37 2.1E-41 274.8 19.0 178 8-231 1-178 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 99.4 1.5E-12 3.3E-17 119.1 9.8 120 38-160 17-151 (326)
15 PRK05437 isopentenyl pyrophosp 99.3 4.9E-12 1.1E-16 117.0 9.9 119 41-159 28-158 (352)
16 TIGR02151 IPP_isom_2 isopenten 99.2 1.2E-10 2.7E-15 106.9 10.8 116 42-160 22-152 (333)
17 TIGR01306 GMP_reduct_2 guanosi 98.5 2.1E-07 4.7E-12 85.2 7.1 106 42-160 3-117 (321)
18 PRK05458 guanosine 5'-monophos 98.1 3.7E-06 8E-11 77.3 6.1 122 42-174 6-139 (326)
19 PRK08649 inosine 5-monophospha 97.3 0.00085 1.8E-08 62.8 7.7 114 42-164 17-172 (368)
20 cd00381 IMPDH IMPDH: The catal 97.0 0.0031 6.8E-08 57.9 8.2 106 42-157 3-114 (325)
21 TIGR01304 IMP_DH_rel_2 IMP deh 96.3 0.028 6.1E-07 52.7 9.6 62 41-108 13-75 (369)
22 TIGR01037 pyrD_sub1_fam dihydr 95.7 0.13 2.7E-06 46.3 10.9 95 61-162 1-131 (300)
23 TIGR01305 GMP_reduct_1 guanosi 95.7 0.094 2E-06 48.7 9.9 110 42-160 9-130 (343)
24 PRK07259 dihydroorotate dehydr 95.3 0.23 5E-06 44.7 11.1 95 60-161 1-130 (301)
25 cd04740 DHOD_1B_like Dihydroor 95.0 0.32 7E-06 43.5 11.0 39 123-162 90-128 (296)
26 PLN02495 oxidoreductase, actin 94.2 0.51 1.1E-05 44.6 10.7 26 56-81 6-31 (385)
27 PRK06843 inosine 5-monophospha 92.9 0.7 1.5E-05 44.0 9.2 70 41-118 10-81 (404)
28 TIGR00737 nifR3_yhdG putative 91.9 1.2 2.6E-05 40.5 9.3 88 67-161 3-100 (319)
29 PRK07565 dihydroorotate dehydr 91.8 1.7 3.7E-05 39.9 10.2 23 60-82 2-24 (334)
30 cd02808 GltS_FMN Glutamate syn 90.8 2.5 5.4E-05 39.9 10.4 50 69-120 75-124 (392)
31 cd02940 DHPD_FMN Dihydropyrimi 90.2 3.6 7.7E-05 37.2 10.5 40 123-162 100-139 (299)
32 cd04739 DHOD_like Dihydroorota 90.1 2.7 5.8E-05 38.6 9.7 38 122-160 99-136 (325)
33 PF00478 IMPDH: IMP dehydrogen 90.1 1.9 4E-05 40.4 8.7 121 42-174 4-148 (352)
34 cd04738 DHOD_2_like Dihydrooro 90.1 5.7 0.00012 36.4 11.9 124 32-162 9-173 (327)
35 cd04722 TIM_phosphate_binding 89.9 1.8 3.8E-05 34.8 7.6 74 88-161 12-96 (200)
36 PRK08318 dihydropyrimidine deh 88.2 5.8 0.00013 37.5 10.8 39 123-161 100-138 (420)
37 cd02810 DHOD_DHPD_FMN Dihydroo 88.2 5.5 0.00012 35.4 10.1 41 123-164 99-139 (289)
38 PRK05286 dihydroorotate dehydr 88.1 13 0.00028 34.4 12.8 122 32-162 15-182 (344)
39 PRK05096 guanosine 5'-monophos 84.9 5.9 0.00013 37.0 8.6 69 42-118 10-85 (346)
40 PRK10550 tRNA-dihydrouridine s 84.1 5.7 0.00012 36.4 8.2 83 72-161 1-100 (312)
41 PTZ00314 inosine-5'-monophosph 82.8 6.2 0.00013 38.5 8.3 108 42-158 19-135 (495)
42 cd04728 ThiG Thiazole synthase 81.2 2.5 5.5E-05 37.7 4.5 85 122-230 89-180 (248)
43 cd04730 NPD_like 2-Nitropropan 81.1 7.1 0.00015 33.3 7.3 81 71-158 2-89 (236)
44 COG2070 Dioxygenases related t 80.6 16 0.00036 33.8 9.9 119 16-156 33-154 (336)
45 PRK10415 tRNA-dihydrouridine s 80.4 11 0.00024 34.4 8.7 88 67-161 5-102 (321)
46 PRK02506 dihydroorotate dehydr 79.7 20 0.00042 32.7 10.0 96 60-162 1-132 (310)
47 KOG2335 tRNA-dihydrouridine sy 77.8 17 0.00036 34.2 8.9 36 121-156 140-175 (358)
48 TIGR01858 tag_bisphos_ald clas 77.4 4.4 9.5E-05 36.8 5.0 73 86-164 25-108 (282)
49 PRK05567 inosine 5'-monophosph 76.6 6.8 0.00015 37.9 6.4 107 42-157 10-125 (486)
50 PRK00208 thiG thiazole synthas 76.3 4.2 9.1E-05 36.3 4.4 84 123-230 90-180 (250)
51 PF01207 Dus: Dihydrouridine s 75.9 9 0.00019 34.9 6.6 38 121-158 121-160 (309)
52 TIGR03151 enACPred_II putative 75.7 12 0.00027 34.0 7.5 86 63-159 5-97 (307)
53 PRK13397 3-deoxy-7-phosphohept 75.0 8.2 0.00018 34.5 5.9 69 76-150 55-123 (250)
54 cd00947 TBP_aldolase_IIB Tagat 74.5 6.7 0.00014 35.5 5.3 67 86-156 22-99 (276)
55 PRK12738 kbaY tagatose-bisphos 73.2 6.6 0.00014 35.7 5.0 73 86-164 27-110 (286)
56 PRK08673 3-deoxy-7-phosphohept 73.0 9.2 0.0002 35.6 6.0 60 88-153 144-204 (335)
57 PRK09195 gatY tagatose-bisphos 72.9 6.1 0.00013 35.9 4.7 67 86-156 27-104 (284)
58 PRK07807 inosine 5-monophospha 72.4 13 0.00028 36.2 7.1 105 42-157 14-127 (479)
59 PF01116 F_bP_aldolase: Fructo 72.4 3 6.5E-05 37.8 2.6 66 88-157 28-104 (287)
60 PRK11815 tRNA-dihydrouridine s 71.7 35 0.00077 31.3 9.6 89 67-162 6-103 (333)
61 TIGR03455 HisG_C-term ATP phos 71.7 19 0.00042 27.5 6.6 56 101-156 28-94 (100)
62 PRK12595 bifunctional 3-deoxy- 71.7 9.7 0.00021 35.7 5.9 67 81-153 163-229 (360)
63 PRK12857 fructose-1,6-bisphosp 71.7 7.4 0.00016 35.3 5.0 71 88-164 29-110 (284)
64 TIGR01361 DAHP_synth_Bsub phos 71.2 30 0.00064 30.8 8.6 45 91-156 122-166 (260)
65 TIGR01303 IMP_DH_rel_1 IMP deh 70.7 18 0.00039 35.2 7.7 102 42-156 13-125 (475)
66 PRK12737 gatY tagatose-bisphos 70.6 8.4 0.00018 34.9 5.1 71 86-162 27-108 (284)
67 cd00951 KDGDH 5-dehydro-4-deox 70.6 36 0.00078 30.5 9.2 85 72-158 5-103 (289)
68 TIGR00167 cbbA ketose-bisphosp 69.9 11 0.00024 34.3 5.6 73 86-164 27-113 (288)
69 PRK03620 5-dehydro-4-deoxygluc 69.8 38 0.00082 30.6 9.2 99 72-173 12-124 (303)
70 PRK06801 hypothetical protein; 69.0 12 0.00026 33.9 5.7 71 87-163 28-109 (286)
71 PLN02274 inosine-5'-monophosph 68.0 30 0.00066 33.9 8.6 109 41-158 22-139 (505)
72 PRK13398 3-deoxy-7-phosphohept 67.9 16 0.00035 32.7 6.3 66 78-150 69-135 (266)
73 PRK05835 fructose-bisphosphate 67.4 12 0.00026 34.4 5.4 67 86-156 26-104 (307)
74 PRK13396 3-deoxy-7-phosphohept 67.3 12 0.00027 35.0 5.6 65 79-150 144-209 (352)
75 PRK08227 autoinducer 2 aldolas 66.9 31 0.00067 31.0 7.8 64 93-156 163-226 (264)
76 PRK03170 dihydrodipicolinate s 66.4 47 0.001 29.6 9.0 85 72-157 6-104 (292)
77 PRK06806 fructose-bisphosphate 66.1 74 0.0016 28.7 10.2 130 93-230 66-205 (281)
78 PF08029 HisG_C: HisG, C-termi 65.6 6.8 0.00015 28.5 2.8 48 109-156 12-70 (75)
79 PRK08185 hypothetical protein; 65.3 13 0.00029 33.7 5.2 22 209-230 182-203 (283)
80 cd02810 DHOD_DHPD_FMN Dihydroo 65.3 49 0.0011 29.2 8.9 82 71-156 98-196 (289)
81 PF04028 DUF374: Domain of unk 65.1 32 0.0007 24.9 6.3 55 86-164 19-73 (74)
82 cd04724 Tryptophan_synthase_al 64.7 5.5 0.00012 34.9 2.6 74 133-233 11-84 (242)
83 COG0042 tRNA-dihydrouridine sy 64.5 27 0.00058 32.1 7.2 66 86-158 77-142 (323)
84 PF01645 Glu_synthase: Conserv 64.0 5.7 0.00012 37.4 2.7 73 69-145 63-135 (368)
85 PRK07998 gatY putative fructos 63.2 14 0.0003 33.6 4.9 69 88-162 29-108 (283)
86 cd08585 GDPD_like_3 Glyceropho 62.9 20 0.00043 31.2 5.7 71 91-161 119-221 (237)
87 TIGR01361 DAHP_synth_Bsub phos 61.8 24 0.00053 31.4 6.2 61 87-153 75-136 (260)
88 PRK06806 fructose-bisphosphate 61.7 17 0.00037 32.8 5.2 75 86-166 27-112 (281)
89 TIGR01302 IMP_dehydrog inosine 61.2 55 0.0012 31.4 8.9 109 42-159 3-120 (450)
90 cd04739 DHOD_like Dihydroorota 60.4 62 0.0013 29.6 8.8 82 71-158 99-197 (325)
91 TIGR03884 sel_bind_Methan sele 59.8 12 0.00026 27.3 3.2 27 134-160 26-54 (74)
92 TIGR00290 MJ0570_dom MJ0570-re 59.2 44 0.00096 29.2 7.2 128 24-162 5-147 (223)
93 TIGR00742 yjbN tRNA dihydrouri 59.1 59 0.0013 29.8 8.4 83 73-162 2-93 (318)
94 smart00481 POLIIIAc DNA polyme 59.1 13 0.00027 25.5 3.1 28 137-164 16-43 (67)
95 TIGR00683 nanA N-acetylneurami 58.4 80 0.0017 28.3 9.0 100 72-173 5-119 (290)
96 cd02940 DHPD_FMN Dihydropyrimi 58.2 35 0.00075 30.7 6.6 33 122-156 168-200 (299)
97 TIGR03151 enACPred_II putative 58.0 32 0.0007 31.3 6.4 59 91-157 77-137 (307)
98 PLN02826 dihydroorotate dehydr 58.0 24 0.00053 33.6 5.8 46 31-78 46-91 (409)
99 TIGR03249 KdgD 5-dehydro-4-deo 57.1 93 0.002 27.8 9.2 99 72-173 10-122 (296)
100 cd04741 DHOD_1A_like Dihydroor 57.1 82 0.0018 28.3 8.9 90 63-161 1-131 (294)
101 TIGR03679 arCOG00187 arCOG0018 57.0 26 0.00055 30.3 5.4 62 93-163 79-149 (218)
102 TIGR01521 FruBisAldo_II_B fruc 57.0 22 0.00048 33.3 5.2 67 86-156 25-103 (347)
103 PRK10550 tRNA-dihydrouridine s 56.1 67 0.0015 29.3 8.2 33 124-156 135-168 (312)
104 PRK13399 fructose-1,6-bisphosp 54.5 28 0.0006 32.6 5.4 67 86-156 27-105 (347)
105 PRK07709 fructose-bisphosphate 54.5 31 0.00066 31.4 5.6 67 86-156 27-107 (285)
106 cd08600 GDPD_EcGlpQ_like Glyce 54.2 58 0.0013 29.7 7.5 73 89-161 155-288 (318)
107 PRK11081 tRNA guanosine-2'-O-m 53.4 70 0.0015 28.0 7.6 74 82-158 25-99 (229)
108 PRK05286 dihydroorotate dehydr 53.3 64 0.0014 29.7 7.7 37 123-159 212-248 (344)
109 PRK11840 bifunctional sulfur c 53.3 13 0.00029 34.4 3.1 50 122-171 163-219 (326)
110 cd08205 RuBisCO_IV_RLP Ribulos 53.2 1.3E+02 0.0028 28.2 9.8 114 46-160 101-234 (367)
111 PF00701 DHDPS: Dihydrodipicol 52.6 1.3E+02 0.0028 26.6 9.4 84 73-157 7-104 (289)
112 PRK08610 fructose-bisphosphate 52.3 30 0.00066 31.4 5.2 67 86-156 27-107 (286)
113 cd00950 DHDPS Dihydrodipicolin 51.7 1.3E+02 0.0028 26.6 9.1 85 72-157 5-103 (284)
114 TIGR00742 yjbN tRNA dihydrouri 51.4 68 0.0015 29.4 7.4 38 122-159 123-164 (318)
115 TIGR01163 rpe ribulose-phospha 51.2 58 0.0013 27.0 6.5 30 132-161 7-37 (210)
116 PLN02417 dihydrodipicolinate s 51.0 1.4E+02 0.003 26.6 9.3 85 72-157 6-104 (280)
117 COG2185 Sbm Methylmalonyl-CoA 50.5 1.1E+02 0.0023 25.2 7.6 84 74-160 15-102 (143)
118 PRK01130 N-acetylmannosamine-6 50.4 50 0.0011 28.1 6.1 63 91-161 26-98 (221)
119 PRK09196 fructose-1,6-bisphosp 50.1 32 0.00069 32.2 5.1 66 87-156 28-105 (347)
120 cd04743 NPD_PKS 2-Nitropropane 50.0 58 0.0013 30.1 6.7 58 92-157 73-131 (320)
121 PRK11858 aksA trans-homoaconit 49.9 89 0.0019 29.2 8.2 65 88-152 52-132 (378)
122 cd00408 DHDPS-like Dihydrodipi 49.8 1.3E+02 0.0028 26.4 8.8 85 72-157 2-100 (281)
123 KOG1436 Dihydroorotate dehydro 49.6 8.8 0.00019 35.7 1.3 45 32-78 57-101 (398)
124 cd08573 GDPD_GDE1 Glycerophosp 49.4 42 0.00091 29.5 5.6 25 137-161 216-240 (258)
125 PF03060 NMO: Nitronate monoox 49.2 1.3E+02 0.0029 27.4 9.1 85 70-161 10-125 (330)
126 PRK00489 hisG ATP phosphoribos 49.2 54 0.0012 29.2 6.4 56 101-156 214-280 (287)
127 TIGR01036 pyrD_sub2 dihydrooro 48.2 93 0.002 28.7 7.9 36 123-158 211-246 (335)
128 cd08559 GDPD_periplasmic_GlpQ_ 47.7 80 0.0017 28.3 7.2 71 89-159 148-266 (296)
129 PRK07084 fructose-bisphosphate 47.4 33 0.00071 31.8 4.7 66 87-156 34-115 (321)
130 PRK01033 imidazole glycerol ph 46.9 79 0.0017 27.8 7.0 65 92-160 65-132 (258)
131 COG2876 AroA 3-deoxy-D-arabino 46.9 87 0.0019 28.5 7.1 67 77-149 86-152 (286)
132 cd08612 GDPD_GDE4 Glycerophosp 46.4 42 0.0009 30.2 5.2 24 137-160 249-272 (300)
133 PF00290 Trp_syntA: Tryptophan 45.7 88 0.0019 28.0 7.1 79 124-233 9-95 (259)
134 PF05690 ThiG: Thiazole biosyn 45.3 41 0.00088 30.0 4.7 85 122-230 89-180 (247)
135 cd08601 GDPD_SaGlpQ_like Glyce 45.3 82 0.0018 27.3 6.8 71 90-160 128-229 (256)
136 cd00945 Aldolase_Class_I Class 45.0 1.2E+02 0.0026 24.3 7.4 72 86-159 11-88 (201)
137 TIGR00674 dapA dihydrodipicoli 44.8 1.2E+02 0.0025 27.0 7.8 85 72-157 3-101 (285)
138 PRK07315 fructose-bisphosphate 44.1 67 0.0015 29.2 6.2 21 210-230 186-207 (293)
139 PRK05198 2-dehydro-3-deoxyphos 43.9 57 0.0012 29.4 5.5 45 77-121 57-101 (264)
140 COG1830 FbaB DhnA-type fructos 43.7 98 0.0021 28.0 7.0 89 67-155 139-236 (265)
141 COG0107 HisF Imidazoleglycerol 43.4 44 0.00095 29.8 4.6 65 93-161 66-133 (256)
142 cd07015 Clp_protease_NfeD Nodu 43.4 29 0.00062 29.1 3.4 28 135-162 15-42 (172)
143 cd04795 SIS SIS domain. SIS (S 43.2 1.1E+02 0.0024 21.1 6.7 35 122-156 47-81 (87)
144 PRK12855 hypothetical protein; 43.2 29 0.00063 26.8 3.1 26 136-161 60-86 (103)
145 cd01994 Alpha_ANH_like_IV This 43.2 36 0.00077 28.9 4.0 87 65-163 52-151 (194)
146 TIGR01362 KDO8P_synth 3-deoxy- 43.2 61 0.0013 29.2 5.6 45 77-121 49-93 (258)
147 PRK02227 hypothetical protein; 43.1 1.7E+02 0.0037 26.0 8.3 71 86-160 65-153 (238)
148 COG1606 ATP-utilizing enzymes 42.9 26 0.00057 31.5 3.2 29 141-169 33-62 (269)
149 cd07021 Clp_protease_NfeD_like 42.7 32 0.0007 28.8 3.6 27 136-162 16-42 (178)
150 cd02801 DUS_like_FMN Dihydrour 42.1 2.1E+02 0.0044 24.1 8.6 82 73-161 1-92 (231)
151 PRK13125 trpA tryptophan synth 42.0 78 0.0017 27.6 6.1 74 127-233 6-82 (244)
152 TIGR01859 fruc_bis_ald_ fructo 41.9 52 0.0011 29.7 5.1 22 209-230 184-205 (282)
153 TIGR02313 HpaI-NOT-DapA 2,4-di 41.9 1.9E+02 0.0041 26.0 8.7 100 72-173 5-118 (294)
154 cd08568 GDPD_TmGDE_like Glycer 41.9 73 0.0016 27.1 5.8 70 91-160 106-205 (226)
155 PRK02877 hypothetical protein; 41.9 31 0.00068 26.7 3.1 28 136-163 60-88 (106)
156 cd04740 DHOD_1B_like Dihydroor 41.8 2.1E+02 0.0046 25.3 9.0 79 71-155 89-185 (296)
157 PRK07119 2-ketoisovalerate fer 41.3 79 0.0017 29.4 6.3 68 88-158 8-80 (352)
158 cd08210 RLP_RrRLP Ribulose bis 41.1 2.5E+02 0.0054 26.4 9.6 114 43-160 94-229 (364)
159 PLN02775 Probable dihydrodipic 40.8 1.3E+02 0.0027 27.5 7.3 89 26-118 16-120 (286)
160 COG0329 DapA Dihydrodipicolina 40.8 2.1E+02 0.0046 25.8 8.9 88 71-159 8-109 (299)
161 PF01906 YbjQ_1: Putative heav 40.7 33 0.00072 26.1 3.1 25 136-160 60-85 (105)
162 PF01902 ATP_bind_4: ATP-bindi 40.2 32 0.00069 29.9 3.3 122 24-162 5-147 (218)
163 COG1030 NfeD Membrane-bound se 39.9 44 0.00095 32.3 4.4 33 136-170 43-75 (436)
164 PRK10415 tRNA-dihydrouridine s 39.3 1.2E+02 0.0026 27.7 7.1 20 137-156 150-169 (321)
165 TIGR00289 conserved hypothetic 38.9 1.9E+02 0.004 25.3 7.9 127 24-163 5-147 (222)
166 cd08583 PI-PLCc_GDPD_SF_unchar 38.6 46 0.001 28.5 4.1 24 137-160 193-216 (237)
167 cd00954 NAL N-Acetylneuraminic 38.5 2.3E+02 0.0051 25.1 8.8 85 72-157 5-104 (288)
168 TIGR00222 panB 3-methyl-2-oxob 38.4 1E+02 0.0022 27.8 6.3 26 132-157 153-181 (263)
169 PRK12856 hypothetical protein; 37.9 40 0.00086 26.1 3.1 26 136-161 60-86 (103)
170 cd07939 DRE_TIM_NifV Streptomy 37.8 1.9E+02 0.0041 25.3 7.9 71 89-159 47-133 (259)
171 PLN02858 fructose-bisphosphate 37.8 57 0.0012 36.0 5.4 62 91-156 1128-1199(1378)
172 PRK10076 pyruvate formate lyas 37.8 75 0.0016 27.4 5.3 95 76-170 42-148 (213)
173 TIGR02090 LEU1_arch isopropylm 37.7 1.5E+02 0.0031 27.6 7.5 17 136-152 141-157 (363)
174 PRK04147 N-acetylneuraminate l 37.6 2.4E+02 0.0053 25.1 8.8 85 72-157 8-107 (293)
175 COG3147 DedD Uncharacterized p 37.6 31 0.00067 30.3 2.7 38 125-163 152-189 (226)
176 PRK08366 vorA 2-ketoisovalerat 37.1 1.1E+02 0.0024 28.9 6.7 66 88-156 7-79 (390)
177 PF01068 DNA_ligase_A_M: ATP d 37.0 1.2E+02 0.0026 25.0 6.2 42 124-165 151-194 (202)
178 PRK01119 hypothetical protein; 36.8 42 0.00091 26.0 3.2 28 136-163 60-88 (106)
179 cd08555 PI-PLCc_GDPD_SF Cataly 36.6 49 0.0011 27.2 3.8 24 136-159 136-159 (179)
180 cd02801 DUS_like_FMN Dihydrour 36.5 2E+02 0.0044 24.1 7.7 20 137-156 139-158 (231)
181 PRK07565 dihydroorotate dehydr 36.4 2.5E+02 0.0054 25.6 8.8 81 70-156 100-197 (334)
182 TIGR00262 trpA tryptophan synt 36.3 36 0.00079 30.2 3.1 33 125-157 10-45 (256)
183 PRK12457 2-dehydro-3-deoxyphos 36.2 86 0.0019 28.6 5.5 80 65-149 51-130 (281)
184 PRK07259 dihydroorotate dehydr 35.7 2.9E+02 0.0064 24.5 9.0 81 70-156 90-189 (301)
185 TIGR03470 HpnH hopanoid biosyn 35.6 2.5E+02 0.0054 25.5 8.6 78 76-154 76-167 (318)
186 COG2121 Uncharacterized protei 35.4 1.8E+02 0.0039 25.5 7.1 23 86-109 77-99 (214)
187 cd05013 SIS_RpiR RpiR-like pro 35.4 1.9E+02 0.004 21.5 6.9 66 94-159 32-97 (139)
188 PRK09627 oorA 2-oxoglutarate-a 35.3 1.1E+02 0.0024 28.8 6.3 66 88-156 7-77 (375)
189 PRK13585 1-(5-phosphoribosyl)- 35.2 61 0.0013 27.8 4.3 20 211-230 179-198 (241)
190 COG0107 HisF Imidazoleglycerol 35.2 55 0.0012 29.2 4.0 61 92-157 112-176 (256)
191 PLN03033 2-dehydro-3-deoxyphos 34.8 1.2E+02 0.0026 27.7 6.2 45 77-121 63-107 (290)
192 PRK00311 panB 3-methyl-2-oxobu 34.8 1.3E+02 0.0028 27.0 6.4 25 132-156 154-181 (264)
193 PRK00967 hypothetical protein; 34.5 48 0.001 25.6 3.2 28 136-163 60-88 (105)
194 PLN02495 oxidoreductase, actin 34.5 2.6E+02 0.0057 26.5 8.7 82 71-157 113-215 (385)
195 COG0393 Uncharacterized conser 34.4 47 0.001 26.0 3.1 28 136-163 60-88 (108)
196 TIGR02494 PFLE_PFLC glycyl-rad 34.3 2.6E+02 0.0057 24.6 8.4 80 77-156 130-221 (295)
197 CHL00200 trpA tryptophan synth 34.2 1.3E+02 0.0029 26.8 6.4 80 124-234 14-100 (263)
198 PF01180 DHO_dh: Dihydroorotat 34.0 40 0.00086 30.1 3.0 18 61-78 2-19 (295)
199 COG1180 PflA Pyruvate-formate 34.0 2.9E+02 0.0062 24.5 8.5 90 80-170 91-193 (260)
200 PF06506 PrpR_N: Propionate ca 33.9 77 0.0017 26.1 4.6 82 66-155 48-131 (176)
201 cd08580 GDPD_Rv2277c_like Glyc 33.8 51 0.0011 29.4 3.6 24 137-160 217-241 (263)
202 PF05036 SPOR: Sporulation rel 33.8 64 0.0014 21.8 3.5 32 123-154 3-34 (76)
203 COG0040 HisG ATP phosphoribosy 32.8 69 0.0015 29.3 4.3 62 95-156 211-283 (290)
204 TIGR00284 dihydropteroate synt 32.5 1.3E+02 0.0028 29.6 6.5 90 91-185 218-322 (499)
205 cd08604 GDPD_SHV3_repeat_2 Gly 32.4 1.5E+02 0.0033 26.7 6.5 21 140-160 241-261 (300)
206 PRK01217 hypothetical protein; 32.0 55 0.0012 25.7 3.2 28 136-163 67-95 (114)
207 cd00946 FBP_aldolase_IIA Class 31.8 79 0.0017 29.6 4.7 24 86-109 25-48 (345)
208 COG2022 ThiG Uncharacterized e 31.5 1.3E+02 0.0028 27.0 5.6 110 97-230 65-187 (262)
209 PF02811 PHP: PHP domain; Int 31.5 46 0.001 26.2 2.8 27 137-163 17-43 (175)
210 cd07896 Adenylation_kDNA_ligas 31.4 1.7E+02 0.0036 23.8 6.1 39 127-165 126-165 (174)
211 PLN02591 tryptophan synthase 31.3 1.6E+02 0.0035 26.1 6.4 71 133-234 13-87 (250)
212 TIGR02660 nifV_homocitr homoci 31.1 2.7E+02 0.0058 25.8 8.1 12 140-151 117-128 (365)
213 TIGR01036 pyrD_sub2 dihydrooro 30.9 73 0.0016 29.4 4.3 39 61-106 46-84 (335)
214 cd02911 arch_FMN Archeal FMN-b 30.8 3.3E+02 0.0071 23.6 8.2 39 122-162 72-110 (233)
215 PRK06361 hypothetical protein; 30.4 53 0.0012 27.6 3.1 25 137-161 11-35 (212)
216 COG0167 PyrD Dihydroorotate de 30.4 1.2E+02 0.0026 28.0 5.5 77 78-156 98-193 (310)
217 TIGR01037 pyrD_sub1_fam dihydr 30.4 1.1E+02 0.0024 27.3 5.3 37 118-156 153-189 (300)
218 PRK05562 precorrin-2 dehydroge 30.4 3.7E+02 0.008 23.5 8.6 91 69-162 14-121 (223)
219 cd08574 GDPD_GDE_2_3_6 Glycero 30.0 1.1E+02 0.0023 26.8 5.0 24 137-160 211-234 (252)
220 PF02593 dTMP_synthase: Thymid 29.8 70 0.0015 28.0 3.7 33 134-166 61-93 (217)
221 cd06557 KPHMT-like Ketopantoat 29.7 1E+02 0.0022 27.5 4.9 25 133-157 152-179 (254)
222 PLN02245 ATP phosphoribosyl tr 29.7 2.6E+02 0.0056 26.9 7.7 60 97-156 298-381 (403)
223 cd08605 GDPD_GDE5_like_1_plant 29.7 1.5E+02 0.0032 26.1 6.0 68 93-160 160-263 (282)
224 PRK08659 2-oxoglutarate ferred 29.6 1.6E+02 0.0035 27.6 6.4 64 88-155 8-77 (376)
225 cd04738 DHOD_2_like Dihydrooro 29.5 99 0.0022 28.2 4.9 35 123-157 203-237 (327)
226 TIGR00007 phosphoribosylformim 29.4 81 0.0018 26.8 4.1 16 213-228 177-192 (230)
227 PF03060 NMO: Nitronate monoox 29.4 1.4E+02 0.0031 27.3 5.9 46 104-156 116-163 (330)
228 cd08606 GDPD_YPL110cp_fungi Gl 29.3 1.5E+02 0.0033 26.1 6.0 23 138-160 234-258 (286)
229 PLN02424 ketopantoate hydroxym 28.9 1.2E+02 0.0026 28.4 5.2 25 133-157 176-203 (332)
230 cd03174 DRE_TIM_metallolyase D 28.7 2.7E+02 0.0058 23.8 7.3 68 90-160 53-139 (265)
231 cd06345 PBP1_ABC_ligand_bindin 28.6 2.4E+02 0.0053 24.9 7.2 74 91-165 81-159 (344)
232 PRK03732 hypothetical protein; 28.4 70 0.0015 25.2 3.2 25 136-160 67-92 (114)
233 cd08563 GDPD_TtGDE_like Glycer 28.2 1.9E+02 0.0041 24.5 6.2 24 137-160 188-211 (230)
234 PRK09197 fructose-bisphosphate 27.9 91 0.002 29.3 4.4 24 86-109 30-53 (350)
235 PRK11815 tRNA-dihydrouridine s 27.8 3E+02 0.0065 25.2 7.8 21 136-156 151-171 (333)
236 TIGR00737 nifR3_yhdG putative 27.8 2.5E+02 0.0054 25.4 7.2 20 137-156 148-167 (319)
237 COG1879 RbsB ABC-type sugar tr 27.6 2.9E+02 0.0064 24.3 7.6 86 72-160 34-127 (322)
238 COG2927 HolC DNA polymerase II 26.9 1.3E+02 0.0029 24.7 4.6 34 127-160 4-40 (144)
239 COG0042 tRNA-dihydrouridine sy 26.7 3.4E+02 0.0074 24.9 7.9 89 66-161 5-104 (323)
240 COG1737 RpiR Transcriptional r 26.7 2.3E+02 0.0049 25.2 6.6 76 93-168 148-223 (281)
241 PRK08367 porA pyruvate ferredo 26.6 2.5E+02 0.0053 26.6 7.1 66 88-156 8-80 (394)
242 cd00453 FTBP_aldolase_II Fruct 26.3 1.2E+02 0.0026 28.4 4.8 65 88-156 24-128 (340)
243 PF03102 NeuB: NeuB family; I 26.3 62 0.0014 28.6 2.9 56 90-146 102-168 (241)
244 PRK05395 3-dehydroquinate dehy 26.3 1.3E+02 0.0029 24.7 4.6 64 109-176 23-95 (146)
245 PF11590 DNAPolymera_Pol: DNA 26.2 28 0.00062 22.4 0.5 30 15-44 4-38 (41)
246 PRK09622 porA pyruvate flavodo 26.0 2.1E+02 0.0045 27.1 6.5 66 88-156 14-86 (407)
247 cd08571 GDPD_SHV3_plant Glycer 25.6 2.5E+02 0.0053 25.4 6.7 74 88-161 150-263 (302)
248 cd08564 GDPD_GsGDE_like Glycer 25.4 3.5E+02 0.0076 23.5 7.5 22 136-157 210-231 (265)
249 TIGR00035 asp_race aspartate r 25.4 79 0.0017 27.1 3.3 39 136-176 62-100 (229)
250 COG0159 TrpA Tryptophan syntha 25.2 2.7E+02 0.0059 25.1 6.7 71 133-234 28-103 (265)
251 PRK15408 autoinducer 2-binding 25.1 4.6E+02 0.01 23.7 8.5 82 74-158 26-114 (336)
252 cd06346 PBP1_ABC_ligand_bindin 25.0 2.5E+02 0.0053 24.6 6.5 66 91-160 81-148 (312)
253 cd05014 SIS_Kpsf KpsF-like pro 25.0 2.6E+02 0.0055 21.0 5.9 35 125-159 50-84 (128)
254 KOG1541 Predicted protein carb 24.9 79 0.0017 28.3 3.1 38 123-162 154-191 (270)
255 PF10903 DUF2691: Protein of u 24.7 1.6E+02 0.0035 24.4 4.8 33 125-158 111-143 (153)
256 cd08579 GDPD_memb_like Glycero 24.7 1.8E+02 0.0039 24.4 5.4 70 91-160 115-201 (220)
257 PF09413 DUF2007: Domain of un 24.6 84 0.0018 21.4 2.7 53 90-145 11-65 (67)
258 cd08581 GDPD_like_1 Glyceropho 24.4 1.8E+02 0.0039 25.0 5.4 22 140-161 190-211 (229)
259 cd04734 OYE_like_3_FMN Old yel 24.4 4E+02 0.0088 24.4 8.0 22 135-156 227-249 (343)
260 cd02072 Glm_B12_BD B12 binding 24.4 2.8E+02 0.0061 22.1 6.1 26 92-117 41-67 (128)
261 PRK10864 putative methyltransf 24.3 1.6E+02 0.0035 27.5 5.3 57 100-156 173-230 (346)
262 cd08567 GDPD_SpGDE_like Glycer 24.3 2.1E+02 0.0046 24.5 5.9 24 137-160 219-242 (263)
263 PRK11633 cell division protein 24.2 1.7E+02 0.0036 25.8 5.1 37 124-160 149-185 (226)
264 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.1 1E+02 0.0022 23.2 3.4 33 126-158 50-82 (126)
265 cd04729 NanE N-acetylmannosami 24.1 2.9E+02 0.0063 23.3 6.6 64 91-156 30-99 (219)
266 COG0036 Rpe Pentose-5-phosphat 24.0 2.2E+02 0.0048 25.0 5.8 57 132-232 12-68 (220)
267 PRK08318 dihydropyrimidine deh 24.0 1.3E+02 0.0029 28.3 4.8 33 122-156 168-200 (420)
268 cd03319 L-Ala-DL-Glu_epimerase 24.0 2E+02 0.0042 25.8 5.8 91 114-228 139-231 (316)
269 TIGR00736 nifR3_rel_arch TIM-b 24.0 2.2E+02 0.0047 25.0 5.8 33 123-155 135-167 (231)
270 cd07020 Clp_protease_NfeD_1 No 23.9 1E+02 0.0022 25.7 3.6 27 135-161 15-41 (187)
271 PF06414 Zeta_toxin: Zeta toxi 23.6 76 0.0017 26.4 2.8 31 131-161 101-131 (199)
272 PF07338 DUF1471: Protein of u 23.5 1.4E+02 0.003 20.2 3.6 21 136-156 19-39 (56)
273 PRK13111 trpA tryptophan synth 23.4 2.7E+02 0.0059 24.7 6.4 32 125-156 12-46 (258)
274 TIGR00735 hisF imidazoleglycer 23.3 2.7E+02 0.0059 24.2 6.4 63 93-159 66-131 (254)
275 TIGR03569 NeuB_NnaB N-acetylne 23.2 86 0.0019 29.1 3.3 30 90-120 122-151 (329)
276 COG1832 Predicted CoA-binding 23.2 52 0.0011 26.9 1.6 24 122-150 98-121 (140)
277 cd05710 SIS_1 A subgroup of th 23.1 1.4E+02 0.0031 22.7 4.1 37 123-159 48-84 (120)
278 cd04742 NPD_FabD 2-Nitropropan 23.1 5.1E+02 0.011 24.9 8.5 84 64-155 8-101 (418)
279 TIGR02493 PFLA pyruvate format 23.0 4.6E+02 0.0099 22.0 8.2 76 79-154 72-161 (235)
280 COG4464 CapC Capsular polysacc 23.0 96 0.0021 27.5 3.3 27 132-158 16-42 (254)
281 PF03599 CdhD: CO dehydrogenas 22.9 3.1E+02 0.0068 26.1 7.0 84 70-165 97-185 (386)
282 PRK14582 pgaB outer membrane N 22.7 3.4E+02 0.0074 27.8 7.6 67 91-157 257-355 (671)
283 cd08570 GDPD_YPL206cp_fungi Gl 22.6 2.6E+02 0.0056 23.8 6.0 24 137-160 192-215 (234)
284 cd07901 Adenylation_DNA_ligase 22.4 2.8E+02 0.006 23.3 6.1 35 132-166 162-198 (207)
285 TIGR01501 MthylAspMutase methy 22.4 3.2E+02 0.0068 21.9 6.0 68 85-153 13-84 (134)
286 cd07372 2A5CPDO_B The beta sub 22.2 2.5E+02 0.0053 25.5 6.0 66 92-157 41-120 (294)
287 KOG3111 D-ribulose-5-phosphate 22.1 92 0.002 27.2 3.0 77 85-161 93-178 (224)
288 PRK09140 2-dehydro-3-deoxy-6-p 22.0 1.9E+02 0.004 24.8 4.9 56 93-155 75-130 (206)
289 PRK09248 putative hydrolase; V 21.4 88 0.0019 27.0 2.8 24 137-160 20-43 (246)
290 cd00466 DHQase_II Dehydroquina 21.2 2.2E+02 0.0049 23.2 4.9 64 109-176 21-93 (140)
291 COG2085 Predicted dinucleotide 21.1 2.7E+02 0.0058 24.3 5.7 68 87-154 109-177 (211)
292 cd06332 PBP1_aromatic_compound 21.1 5.4E+02 0.012 22.2 8.5 80 90-173 78-158 (333)
293 PLN02826 dihydroorotate dehydr 20.9 1.9E+02 0.0042 27.6 5.2 35 123-157 263-297 (409)
294 TIGR03863 PQQ_ABC_bind ABC tra 20.9 5.4E+02 0.012 23.5 8.1 23 90-112 72-94 (347)
295 TIGR01520 FruBisAldo_II_A fruc 20.8 1.7E+02 0.0037 27.5 4.8 23 86-108 36-58 (357)
296 PF05226 CHASE2: CHASE2 domain 20.8 1.3E+02 0.0027 26.8 3.8 32 131-162 59-90 (310)
297 TIGR00381 cdhD CO dehydrogenas 20.7 3.8E+02 0.0082 25.6 7.0 92 67-165 184-283 (389)
298 PRK09250 fructose-bisphosphate 20.5 1.5E+02 0.0032 27.9 4.2 20 140-159 150-169 (348)
299 COG2069 CdhD CO dehydrogenase/ 20.5 1.8E+02 0.004 27.1 4.7 91 68-165 196-294 (403)
300 TIGR02109 PQQ_syn_pqqE coenzym 20.4 2.3E+02 0.0049 25.8 5.5 80 79-159 60-155 (358)
301 PRK09454 ugpQ cytoplasmic glyc 20.4 1.3E+02 0.0029 26.0 3.8 24 137-160 197-220 (249)
302 PLN02706 glucosamine 6-phospha 20.2 2.3E+02 0.0049 21.7 4.8 34 137-173 106-139 (150)
303 TIGR03586 PseI pseudaminic aci 20.2 97 0.0021 28.7 3.0 24 132-155 13-36 (327)
304 PF01188 MR_MLE: Mandelate rac 20.2 88 0.0019 21.4 2.1 19 211-229 47-65 (67)
305 cd01994 Alpha_ANH_like_IV This 20.2 4.7E+02 0.01 21.9 7.0 26 84-109 41-66 (194)
306 cd00953 KDG_aldolase KDG (2-ke 20.1 6.1E+02 0.013 22.4 9.4 80 75-157 8-99 (279)
307 cd00452 KDPG_aldolase KDPG and 20.1 2E+02 0.0043 23.9 4.6 16 140-155 108-123 (190)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=4.6e-76 Score=521.91 Aligned_cols=228 Identities=71% Similarity=1.042 Sum_probs=219.4
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEeccccccc
Q 026729 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (234)
Q Consensus 4 ~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~ 83 (234)
++|++|||+.|+++||+.+||||.|||+|+.|+++|++||+||+||||+|+||+++|+||++||+++++||+|||||+|+
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 84 l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
|+|||||.++||||+++|++|++||+|++|+|||++++| +.+|||||+++||+++++|++|||++||+|||||||+|++
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999998875 8999999999999999999999999999999999999999
Q ss_pred CchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 163 G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
|+|+.|+||+|.+|.+++++|+......++.+.+.+++..+...++||+++|+||+|||++|+|||+|.
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvK 229 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVK 229 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEE
Confidence 999999999999999999999988766666666778889999999999999999999999999999873
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=5e-71 Score=508.55 Aligned_cols=229 Identities=87% Similarity=1.262 Sum_probs=209.6
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccc
Q 026729 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (234)
Q Consensus 3 ~~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~ 82 (234)
.++|++|||+.||++||+.+|+||+|||+||.|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 83 ~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
+|+||+||+++||||+++|++|++||+||+|+|||+++.+++.|||||+++|+++++++|+|||++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987677899999999999999999999999999999999999999
Q ss_pred CchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 163 G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
|+||+|+||+|.+|.+++++++......+.......+...+...++++++||+||+|||+.|++||.|.
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivK 230 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVK 230 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEee
Confidence 999999999999998887776533211111112233556677778899999999999999999999874
No 3
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-69 Score=497.33 Aligned_cols=228 Identities=32% Similarity=0.520 Sum_probs=204.9
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccc
Q 026729 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (234)
Q Consensus 3 ~~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~ 82 (234)
+++|++|||++||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 83 ~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
+|+||+||+++||||+++|++|++||.|++|+|||+++.+++.|||||+++|+++++++|+||+++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred CchhhHhhccCCCCCcCcccccccc-----------------ccCCCcc-----cCcccHHHHhhhcCCCCCChHHHHHH
Q 026729 163 GRREADIKNRFTLPPFLTLKNFQGL-----------------DLGKMDE-----ANDSGLAAYVAGQIDRSLSWKNILCL 220 (234)
Q Consensus 163 G~Re~d~r~~f~~p~~~~~~~~~~~-----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~tW~di~wl 220 (234)
|+||+|+||+|.+|.. +++++... .+.|... .+...+..+...++++++||+||+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999853 54443210 1122211 11223445677788999999999999
Q ss_pred HHhCCCccccc
Q 026729 221 YQDFSFECDVM 231 (234)
Q Consensus 221 r~~w~l~~~~~ 231 (234)
|++|++||+|-
T Consensus 241 r~~~~~pvivK 251 (381)
T PRK11197 241 RDFWDGPMVIK 251 (381)
T ss_pred HHhCCCCEEEE
Confidence 99999999873
No 4
>PLN02535 glycolate oxidase
Probab=100.00 E-value=2e-68 Score=491.46 Aligned_cols=227 Identities=59% Similarity=0.881 Sum_probs=205.2
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEeccccc
Q 026729 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (234)
Q Consensus 2 ~~~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~ 81 (234)
++++|++|||+.||++||+.+|+||+||++||.|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 82 ~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
++|+||+||+++||||+++|+||++||.|++|+|||+++.+++.|||||+++|+++++++|+|||++||+|||||||+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998767889999999999999999999999999999999999999
Q ss_pred CCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 162 ~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
.|+||+|+||+|.+|. .+++......+.......+...+....+++++||+||+|||+.|++||.|-
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivK 229 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIK 229 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEe
Confidence 9999999999999883 333322100011111234556677788899999999999999999999874
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=9.1e-68 Score=486.33 Aligned_cols=222 Identities=38% Similarity=0.580 Sum_probs=200.8
Q ss_pred HHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccccccCc
Q 026729 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (234)
Q Consensus 8 ~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p 87 (234)
+|||+.||++||+.+|+||+|||+||.|+++|++||++|+|+||+|+||+++||+||+||+++++||+|||+|+++|+||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhh
Q 026729 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~ 167 (234)
+||+++||||+++|+||++||+|++|+|||+++.+++.|||||++ |++++++||+||+++||+|||||||+|+.|+||+
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999996 6999999999999999999999999999999999
Q ss_pred HhhccCCCCCcCccccccccc----------------cCCCccc---CcccHHHHhhhcCCCCCChHHHHHHHHhCCCcc
Q 026729 168 DIKNRFTLPPFLTLKNFQGLD----------------LGKMDEA---NDSGLAAYVAGQIDRSLSWKNILCLYQDFSFEC 228 (234)
Q Consensus 168 d~r~~f~~p~~~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~ 228 (234)
|+||+|.+|++++++++.+.. +.+.... ...+...+...+.+++++|++|+|||+.|++|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999999888877754311 1111111 112345566667899999999999999999999
Q ss_pred cc
Q 026729 229 DV 230 (234)
Q Consensus 229 ~~ 230 (234)
+|
T Consensus 240 ii 241 (361)
T cd04736 240 LV 241 (361)
T ss_pred EE
Confidence 76
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.2e-65 Score=475.71 Aligned_cols=227 Identities=33% Similarity=0.520 Sum_probs=198.9
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEeccccccc
Q 026729 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (234)
Q Consensus 4 ~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~ 83 (234)
++|++|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC-CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 84 l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
|+||+||+++||||+++|++|++||.|++|+|||+++. +++.|||||+++|+++++++|+|||++||+|||||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999874 47899999999999999999999999999999999999999
Q ss_pred CchhhHhhccCCCCCc--Ccccccccc-----ccCCCccc-------CcccHHHHhhhcCCCCCChHHHHHHHHhCCCcc
Q 026729 163 GRREADIKNRFTLPPF--LTLKNFQGL-----DLGKMDEA-------NDSGLAAYVAGQIDRSLSWKNILCLYQDFSFEC 228 (234)
Q Consensus 163 G~Re~d~r~~f~~p~~--~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~ 228 (234)
|+||+|+||+| .|.. .+..++... .+.+.... .......+...++++++||++|+|||+.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999999 4532 222221100 00000000 112344455666899999999999999999999
Q ss_pred ccc
Q 026729 229 DVM 231 (234)
Q Consensus 229 ~~~ 231 (234)
+|-
T Consensus 257 ivK 259 (383)
T cd03332 257 VLK 259 (383)
T ss_pred EEe
Confidence 874
No 7
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.9e-65 Score=471.86 Aligned_cols=222 Identities=32% Similarity=0.474 Sum_probs=197.5
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccc
Q 026729 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (234)
Q Consensus 3 ~~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~ 82 (234)
+++|++|||+.||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC-CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 83 ~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
+|+||+||+++||||+++|++|++||.|++|+|||+++. +++.|||||+++|+++++++|+||+++||+|||||||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999874 5789999999999999999999999999999999999999
Q ss_pred CCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 162 ~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
.|+||+|+||+|.+|..+...+- ........... ......+++++|++|+|||+.|++||.|.
T Consensus 172 ~g~R~~d~r~~~~~p~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~w~~i~~l~~~~~~PvivK 234 (367)
T TIGR02708 172 GGNREVDVRNGFVFPVGMPIVQE------YLPTGAGKSMD-NVYKSAKQKLSPRDIEEIAGYSGLPVYVK 234 (367)
T ss_pred CCcchhhhhcCCCCCCccchhhh------hcccCCccchh-hhccccCCCCCHHHHHHHHHhcCCCEEEe
Confidence 99999999999999854432221 00000000011 12233468999999999999999999873
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=6.1e-64 Score=460.40 Aligned_cols=223 Identities=37% Similarity=0.565 Sum_probs=200.0
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccc
Q 026729 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (234)
Q Consensus 3 ~~~~i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~ 82 (234)
+++|++|||++||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC-CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 83 ~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
+|+||+||+++||||+++|++|++|+.|++|+|||+++. +++.|||||+++|+++++++|+||+++||++|+||||+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 5789999999999999999999999999999999999999
Q ss_pred CCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 162 ~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
.|+|++|+||+|.+|.+++..+...... ....+... ....+++.+||++|+|||+.|++||.|.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~~lr~~~~~PvivK 227 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-----GKGKGISE-IYAAAKQKLSPADIEFIAKISGLPVIVK 227 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-----ccCcchhh-hhhhccCCCCHHHHHHHHHHhCCcEEEe
Confidence 9999999999999997655443221100 00111111 2234678899999999999999999875
No 9
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=5.6e-61 Score=440.21 Aligned_cols=217 Identities=42% Similarity=0.641 Sum_probs=198.0
Q ss_pred HHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccccccCc
Q 026729 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (234)
Q Consensus 8 ~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p 87 (234)
+|||++||++||+.+|+||+|||+||+|+++|++||++|+|+||+|+|++++||+|++||+++++||+|||||+++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhc-CC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCch
Q 026729 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~-~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~R 165 (234)
+||+++||||+++|++|++||++++|+|||+++ .+ ++.|||||+++|++.++++++|||++||+|||||||+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999999876 44 7899999999999999999999999999999999999999999
Q ss_pred hhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 166 e~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
++|+||+|..|.+++.++.... ....+...+....+++.++|++|+|||+.|++||.|.
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivK 219 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLK 219 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEE
Confidence 9999999999977665542211 1112334455567789999999999999999999874
No 10
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.5e-58 Score=425.92 Aligned_cols=218 Identities=44% Similarity=0.675 Sum_probs=193.2
Q ss_pred HHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccccccCchhHHHH
Q 026729 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (234)
Q Consensus 14 Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~ 93 (234)
||++||+.+|+||+||+++|.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||++++.||+||.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccC
Q 026729 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (234)
Q Consensus 94 AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f 173 (234)
||||+++|++|++||++++++|||+++.+++.|||||+++|++.+.++|+|||++||+||+||||+|+.|+|++|.||+|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccccccccccCC---------C---c-ccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 174 TLPPFLTLKNFQGLDLGK---------M---D-EANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~---------~---~-~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
.+|++++++++....... . . .........+.....++.++|++|+|||++|++||+|.
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivK 231 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVK 231 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEE
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEE
Confidence 999999888876432110 0 0 11233455677777899999999999999999999873
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=8.1e-55 Score=399.18 Aligned_cols=187 Identities=85% Similarity=1.205 Sum_probs=168.1
Q ss_pred cccccccccCCCCCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCc
Q 026729 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (234)
Q Consensus 45 r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~ 124 (234)
-|+|+||+|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+|++|+|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876788
Q ss_pred cEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHh
Q 026729 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (234)
Q Consensus 125 ~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (234)
.|||||+++|+++++++|+||+++||+|||||||+|+.|+||+|+||+|.+|++++.+++......+.......+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887777643211111112233556677
Q ss_pred hhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 205 AGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 205 ~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
...+++++||+||+|||++|++||.|.
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivK 229 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVK 229 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEee
Confidence 778899999999999999999999874
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=4e-45 Score=336.46 Aligned_cols=219 Identities=38% Similarity=0.540 Sum_probs=199.6
Q ss_pred hHHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccccccC
Q 026729 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (234)
Q Consensus 7 i~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~ 86 (234)
+.|+++.|++++| +.|+|+.+|+++|+|+++|+++|+++.|+||+|++++++|++|++||+++++||+||||++++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchh
Q 026729 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (234)
Q Consensus 87 p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re 166 (234)
++||.+.+++|+.+|+++++|+++|+++|++.+..+ ||+|+.+||+.+.++++||+++||++|++|||+|+.|+|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999987655 9999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCCcCccccccccccCCCcc----cCcccHHHHhhhcCCCCCChHHHHHHHHhCCCcccc
Q 026729 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDE----ANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 167 ~d~r~~f~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~ 230 (234)
+|.++++..|+.....|+......+-.+ .....+..+.....+|.++|+|++||++.|.+|+++
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~ 223 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVL 223 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHH
Confidence 9999999999887777776532221111 111245778888899999999999999999999985
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=9.9e-37 Score=274.79 Aligned_cols=178 Identities=54% Similarity=0.835 Sum_probs=168.3
Q ss_pred HHHHHHHHHhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccccccCc
Q 026729 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (234)
Q Consensus 8 ~D~e~~Ar~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p 87 (234)
.|||+.|+++||+.+|+|+.+|+++|.|+++|+.+|++|+|+||+|++++++||+|++||++++.||+|+||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhh
Q 026729 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~ 167 (234)
++|.++|++|+++|+++++|++++.++|++.+..+++.|+|||...|.+.+.++++++++.|+++|.+++|+|+.|.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999999999999977778899999998899999999999999999999999999975544
Q ss_pred HhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCccccc
Q 026729 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDVM 231 (234)
Q Consensus 168 d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~~ 231 (234)
.+|+.|+|||+.|++||.+-
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK 178 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILK 178 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEe
Confidence 46889999999999998753
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.39 E-value=1.5e-12 Score=119.12 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=84.6
Q ss_pred HHHHhhccccccccccC--CCCCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCC----
Q 026729 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST---- 111 (234)
Q Consensus 38 ~N~~af~r~~l~prvL~--dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss---- 111 (234)
.+...|++++|+|+.|. +++++||+|+|||++++.||+++||++....-.+-...+|++|.++|++|+++|.+.
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35667999999999999 889999999999999999999999986421111224689999999999999999863
Q ss_pred ----CCHHHHHhcCC-CccEEEEeeeC----CHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 112 ----SSVEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 112 ----~sle~ia~~~~-~~~wfQlY~~~----d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+++.+.+..+ .+..--+.... +.+. +.+..+.++++|+-|+++.+
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~---~~~~i~~~~adalel~l~~~ 151 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEE---ARRAVEMIEADALAIHLNPL 151 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHH---HHHHHHhcCCCcEEEeCcch
Confidence 23444554444 44333332222 3332 33333556888998887643
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.34 E-value=4.9e-12 Score=117.00 Aligned_cols=119 Identities=24% Similarity=0.287 Sum_probs=84.1
Q ss_pred HhhccccccccccC--CCCCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCC-------
Q 026729 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST------- 111 (234)
Q Consensus 41 ~af~r~~l~prvL~--dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss------- 111 (234)
..|++++|.|+.|. +++++||+|+|||+++++||+|+||++..---.+-..++|++|.++|++++++|++.
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 45999999999999 778999999999999999999999986531111234689999999999999999872
Q ss_pred -CCHHHHHhcCC-CccEEEEeeeCCHHH-HHHHHHHHHHcCCcEEEEeeCC
Q 026729 112 -SSVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 112 -~sle~ia~~~~-~~~wfQlY~~~d~~~-~~~li~rA~~aG~~AlvvTvD~ 159 (234)
.+++.+.+..| .+.+.-|........ ..++.+.++..++.|+-|.+..
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~ 158 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNP 158 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcc
Confidence 23344444444 444444433322222 2334444566788898888753
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.19 E-value=1.2e-10 Score=106.88 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=79.3
Q ss_pred hhccccccccccCC--CCCCccceeecCcccCcceEecccccccccCchh---HHHHHHHHHhcCCceEeCCCCC----C
Q 026729 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAAGTIMTLSSWST----S 112 (234)
Q Consensus 42 af~r~~l~prvL~d--v~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~g---E~a~AraA~~~gi~~~lSs~ss----~ 112 (234)
.|++++|.|..|.. ++++||+|+|||++++.||+++||++.. +.+ ...+|++|+++|++++++|.+. .
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~---~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 98 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGS---EEAGKINRNLARAARELGIPMGVGSQRAALKDP 98 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCc---hhHHHHHHHHHHHHHHcCCCeEEcCchhhccCh
Confidence 39999999999984 5789999999999999999999988653 333 4579999999999999999872 1
Q ss_pred ----CHHHHHhcCC-CccEEEEeeeCCHH-HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 113 ----SVEEVASTGP-GIRFFQLYVYKDRN-VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 113 ----sle~ia~~~~-~~~wfQlY~~~d~~-~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
+.+.+.+..+ .+..-.+-...... ...+..+..+..++.|+-+.+..+
T Consensus 99 ~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~ 152 (333)
T TIGR02151 99 ETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVL 152 (333)
T ss_pred hhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccc
Confidence 2333444333 33333222111101 123344444556788888877543
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.52 E-value=2.1e-07 Score=85.21 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=76.2
Q ss_pred hhccccccccccCCC--CCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHh
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~ 119 (234)
.|++++|+|+.|... +++|++|+++|.++++||+|+.|. -..+..+|++|++.|...++-- .++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK---~~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHR---FDEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 599999999999866 589999999999999999999993 2788999999999999999965 36776442
Q ss_pred ----cCCCccEEEEeeeCCHHH---HHHHHHHHHHcCCcEEEEeeCCC
Q 026729 120 ----TGPGIRFFQLYVYKDRNV---VAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 120 ----~~~~~~wfQlY~~~d~~~---~~~li~rA~~aG~~AlvvTvD~p 160 (234)
..+. ||+..-.-+. -.+.++...++|..+=+|.+|+.
T Consensus 74 fvrk~k~~----~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~a 117 (321)
T TIGR01306 74 FIKDMQER----GLFASISVGVKACEYEFVTQLAEEALTPEYITIDIA 117 (321)
T ss_pred HHHhcccc----ccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCc
Confidence 2222 2333222112 23444444567865566667765
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.14 E-value=3.7e-06 Score=77.30 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=79.9
Q ss_pred hhccccccccccCCC--CCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHh
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~ 119 (234)
.|++++|+|..|... +++|++|+++|.++++||+|++|. -..+..+|++|++.|...++-- +++|+..+
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 399999999999865 589999999999999999999993 2778899999999999998864 36777542
Q ss_pred ----cCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCc--h----hhHhhccCC
Q 026729 120 ----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR--R----EADIKNRFT 174 (234)
Q Consensus 120 ----~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~--R----e~d~r~~f~ 174 (234)
..+.....-+-+..+.+ ..+.++...++|+.+=+|.+|+.. |. . -+.+|..++
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~-gh~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAH-GHSDSVINMIQHIKKHLP 139 (326)
T ss_pred HHHhccccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCC-CchHHHHHHHHHHHhhCC
Confidence 22321122222222222 223344445676633344555554 32 1 245666553
No 19
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.28 E-value=0.00085 Score=62.79 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=78.9
Q ss_pred hhccccccccccCCC--CCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCC----CCCHH
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS----TSSVE 115 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~s----s~sle 115 (234)
.|+++.|+|. +..+ +++|+++.+-+..+..||+++||..- .+..++++.+++|-.-++.+.+ ..+.|
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 5999999999 6654 67899998989999999999998642 4668999999999876666322 23455
Q ss_pred HHHhcC----C------------Cc-----------------cEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe---eCC
Q 026729 116 EVASTG----P------------GI-----------------RFFQLYVYKDRNVVAQLVRRAERAGFKAIALT---VDT 159 (234)
Q Consensus 116 ~ia~~~----~------------~~-----------------~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT---vD~ 159 (234)
++.+.. + .| ..+-+.. +.....++++.++++|+++|+++ +|.
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~--~~~~~~e~a~~l~eaGvd~I~vhgrt~~~ 167 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSL--SPQRAQELAPTVVEAGVDLFVIQGTVVSA 167 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEec--CCcCHHHHHHHHHHCCCCEEEEeccchhh
Confidence 544310 0 00 1122222 23345688888899999999994 476
Q ss_pred CCCCc
Q 026729 160 PRLGR 164 (234)
Q Consensus 160 pv~G~ 164 (234)
...+.
T Consensus 168 ~h~~~ 172 (368)
T PRK08649 168 EHVSK 172 (368)
T ss_pred hccCC
Confidence 65444
No 20
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.98 E-value=0.0031 Score=57.93 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=72.5
Q ss_pred hhccccccccccC-CCCCCccceeecC-cccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHh
Q 026729 42 AFSRILFRPRILI-DVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (234)
Q Consensus 42 af~r~~l~prvL~-dv~~~d~sttl~G-~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~ 119 (234)
.|+++.|+|..-. +.+++|++|.|.+ ..+..||+.|||... .|..+|.+.+++|-.-++.. +.++|+..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 4899999998632 4478999999998 899999999999753 35677888888887666653 345666543
Q ss_pred c---CC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 120 T---GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 120 ~---~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
. .. .....+. +..+ ....+.++.+.++|++.|+|+.
T Consensus 75 ~i~~vk~~l~v~~~-~~~~-~~~~~~~~~l~eagv~~I~vd~ 114 (325)
T cd00381 75 EVRKVKGRLLVGAA-VGTR-EDDKERAEALVEAGVDVIVIDS 114 (325)
T ss_pred HHHHhccCceEEEe-cCCC-hhHHHHHHHHHhcCCCEEEEEC
Confidence 2 12 2223343 2222 2345677777789999888765
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.30 E-value=0.028 Score=52.72 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=49.9
Q ss_pred Hhhccccccccc-cCCCCCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCC
Q 026729 41 NAFSRILFRPRI-LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS 108 (234)
Q Consensus 41 ~af~r~~l~prv-L~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs 108 (234)
-.|++|.|+|.. =+|-+.+||+.++=+.++..||+.|||++- .+..++.++.++|-+-++|.
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagV------td~~fr~~~~~~Galgvvsa 75 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDAL------VSPEFAIELGELGGLGVLNL 75 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCcc------cCHHHHHHHHHcCCcccccc
Confidence 468999999974 346677888888777889999999999853 36689999999999766764
No 22
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.74 E-value=0.13 Score=46.34 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=58.3
Q ss_pred cceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeC-C--------------------------CCCCC
Q 026729 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-S--------------------------WSTSS 113 (234)
Q Consensus 61 ~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lS-s--------------------------~ss~s 113 (234)
++|+++|.++..||++||.... ...|. .+...+.|.-+++. | +.+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~----~~~~~--~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG----SGVES--LRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC----CCHHH--HHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999994321 12222 22333446665555 1 11223
Q ss_pred HHH----HHhc---CCCccEEEEeeeCCHHHHHHHHHHHHHcC--CcEEEEeeCCCCC
Q 026729 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRL 162 (234)
Q Consensus 114 le~----ia~~---~~~~~wfQlY~~~d~~~~~~li~rA~~aG--~~AlvvTvD~pv~ 162 (234)
++. +... .+.+...||.- .+.+...+..++.++++ +++|-|.+=+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~ 131 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV 131 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCC
Confidence 333 3221 22467899863 45666677888887764 8888888888863
No 23
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.69 E-value=0.094 Score=48.66 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=69.4
Q ss_pred hhccccccccccC--CCCCCccceeecCc-----ccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCH
Q 026729 42 AFSRILFRPRILI--DVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (234)
Q Consensus 42 af~r~~l~prvL~--dv~~~d~sttl~G~-----~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sl 114 (234)
.|+++.|+|+--. .=+++|++++|-.+ .+..||+-|.|-- -+|..+|.+-++.|-.+++- -.+++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt------v~~~~mA~~la~~g~~~~iH--k~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT------VGTFEMAAALSQHSIFTAIH--KHYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc------ccCHHHHHHHHHCCCeEEEe--eCCCH
Confidence 5899999998422 22678999998644 7899999877542 37889999999999999996 34577
Q ss_pred HHHHh----cCCCccEEEEee-eCCHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 115 EEVAS----TGPGIRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 115 e~ia~----~~~~~~wfQlY~-~~d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
|+-++ ..+.. --++.+ -.-.+...+.++...++|-..=+|+||+.
T Consensus 81 e~~~~~v~~~~~~~-~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~A 130 (343)
T TIGR01305 81 DEWKAFATNSSPDC-LQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVA 130 (343)
T ss_pred HHHHHHHHhhcccc-cceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 76432 12211 112222 12222334555555566634444556655
No 24
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.34 E-value=0.23 Score=44.69 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEe-CCCC--------------------------CC
Q 026729 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS--------------------------TS 112 (234)
Q Consensus 60 d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~l-Ss~s--------------------------s~ 112 (234)
|++|+++|.++.-||++|.-.+ ...+| .++.+.+.|.-+++ .|.+ +.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~----~~~~~--~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF----GFGGE--YARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC----CCCHH--HHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 6899999999999999986322 22233 34444455544433 2222 12
Q ss_pred CHH----HHHhc---CCCccEEEEeeeCCHHHHHHHHHHHHHcC-CcEEEEeeCCCC
Q 026729 113 SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPR 161 (234)
Q Consensus 113 sle----~ia~~---~~~~~wfQlY~~~d~~~~~~li~rA~~aG-~~AlvvTvD~pv 161 (234)
.++ ++... ...+...|+-- .+.+...+..++++++| +++|-|.+=+|.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~ 130 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPN 130 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCC
Confidence 222 22211 12345666632 34455566666777776 777777665553
No 25
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.01 E-value=0.32 Score=43.52 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
.+...||.- .+.+...+..++++++|+++|-|++-+|..
T Consensus 90 ~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~ 128 (296)
T cd04740 90 TPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNV 128 (296)
T ss_pred CcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 567888853 355666788889999999999999888764
No 26
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=94.22 E-value=0.51 Score=44.60 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCCCccceeecCcccCcceEeccccc
Q 026729 56 VSKIDMNTTVLGFKISMPIMIAPTAM 81 (234)
Q Consensus 56 v~~~d~sttl~G~~~~~Pi~iaP~g~ 81 (234)
.+..|++|+++|.++..||++|.-..
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~ 31 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPP 31 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccC
Confidence 35679999999999999999987443
No 27
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.88 E-value=0.7 Score=43.97 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=52.7
Q ss_pred HhhccccccccccC-CCCCCccceeec-CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 41 ~af~r~~l~prvL~-dv~~~d~sttl~-G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
-.|+++.|+|..-. ..+++|++|.|. ...+..||+-|||... .+..+|.|.+++|-.-++.. +.++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 35899999998532 235678888876 4567999999999743 35678888999988888873 57787764
No 28
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.93 E-value=1.2 Score=40.51 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=61.1
Q ss_pred CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCC-CCCC-------HHHHHhcC--CCccEEEEeeeCCHH
Q 026729 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-STSS-------VEEVASTG--PGIRFFQLYVYKDRN 136 (234)
Q Consensus 67 G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~-ss~s-------le~ia~~~--~~~~wfQlY~~~d~~ 136 (234)
|.++..|+++|||... .+.+.-+.+++.|.-++.+-+ +..+ ..++.... +.+...||. -.|.+
T Consensus 3 ~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 4578899999998854 456667777777765554432 2222 22222222 246779994 46777
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
...+..++++++||++|=|..-+|.
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCH
Confidence 8888999999999999999999885
No 29
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.82 E-value=1.7 Score=39.88 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=19.6
Q ss_pred ccceeecCcccCcceEecccccc
Q 026729 60 DMNTTVLGFKISMPIMIAPTAMQ 82 (234)
Q Consensus 60 d~sttl~G~~~~~Pi~iaP~g~~ 82 (234)
|++|+++|.++.-||++|.-++.
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~ 24 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS 24 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC
Confidence 68999999999999998775553
No 30
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=90.81 E-value=2.5 Score=39.88 Aligned_cols=50 Identities=24% Similarity=0.208 Sum_probs=39.9
Q ss_pred ccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhc
Q 026729 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120 (234)
Q Consensus 69 ~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~ 120 (234)
.+..||++|||++..+ -.+.-.++|.||+.+|....++.. ..+.|++...
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~ 124 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGG 124 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhh
Confidence 4489999999997765 456778999999999999988864 4677777633
No 31
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.22 E-value=3.6 Score=37.16 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.6
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
.+...|+.-..+.+...+.+++++++|+++|-|.+.+|..
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 4678998654477778888999998999999999999985
No 32
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=90.10 E-value=2.7 Score=38.56 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
+.+.+.|+.- .+.+...+..++++++|+++|-|.+-+|
T Consensus 99 ~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 99 SIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred CCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 3567888843 4556678999999999999999999874
No 33
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.09 E-value=1.9 Score=40.41 Aligned_cols=121 Identities=23% Similarity=0.283 Sum_probs=67.6
Q ss_pred hhccccccccccC-CC--CCCccceee-cCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHH
Q 026729 42 AFSRILFRPRILI-DV--SKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (234)
Q Consensus 42 af~r~~l~prvL~-dv--~~~d~sttl-~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~i 117 (234)
.|+++.|+|..-. +- .++|+++.+ =+.++..||+-|||--. .|..+|.+-++.|-..++-- +.++|+-
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 4999999999743 33 445555445 47899999999997532 57788989899998888865 4565533
Q ss_pred H-------hcC-------CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchh------hHhhccCC
Q 026729 118 A-------STG-------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE------ADIKNRFT 174 (234)
Q Consensus 118 a-------~~~-------~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re------~d~r~~f~ 174 (234)
+ ... .+....=..+.... ...+.++...++|++.||| |+.. |.-+ +.+|..|.
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivI--D~a~-g~s~~~~~~ik~ik~~~~ 148 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVI--DSAH-GHSEHVIDMIKKIKKKFP 148 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEE--E-SS-TTSHHHHHHHHHHHHHST
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEc--cccC-ccHHHHHHHHHHHHHhCC
Confidence 2 111 11222222222111 1234555555689988765 4444 4433 55666663
No 34
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=90.08 E-value=5.7 Score=36.39 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=71.2
Q ss_pred chHHHHHHHHhhcccccccccc-CCCCCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeC-CC
Q 026729 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW 109 (234)
Q Consensus 32 de~t~~~N~~af~r~~l~prvL-~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lS-s~ 109 (234)
-|.+.+-...+++.+...|=.+ ......|++|+++|.++..||++|. |. ..++|. .+...+.|..+++- |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~----~~~~~~--~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF----DKNAEA--IDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC----CCCHHH--HHHHHHCCCcEEEEecc
Confidence 4667777777777766666321 3456789999999999999998854 32 233433 22222444433321 22
Q ss_pred C----------------------------CCC----HHHHHhcC--CCccEEEEeeeCC---HHHHHHHHHHHHHc--CC
Q 026729 110 S----------------------------TSS----VEEVASTG--PGIRFFQLYVYKD---RNVVAQLVRRAERA--GF 150 (234)
Q Consensus 110 s----------------------------s~s----le~ia~~~--~~~~wfQlY~~~d---~~~~~~li~rA~~a--G~ 150 (234)
+ +.. ++++.+.. ..+...|+.-... .+...+..+.++.+ ++
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~a 161 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYA 161 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhC
Confidence 1 112 34444322 3567888854321 12234444444443 39
Q ss_pred cEEEEeeCCCCC
Q 026729 151 KAIALTVDTPRL 162 (234)
Q Consensus 151 ~AlvvTvD~pv~ 162 (234)
++|-+.+=+|..
T Consensus 162 d~ielN~scP~~ 173 (327)
T cd04738 162 DYLVVNVSSPNT 173 (327)
T ss_pred CEEEEECCCCCC
Confidence 999999988875
No 35
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.92 E-value=1.8 Score=34.83 Aligned_cols=74 Identities=20% Similarity=0.113 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCCceEeCCC-C-----C--CC---HHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLSSW-S-----T--SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~-s-----s--~s---le~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+.....++.+.+.|+-++.... . . .. ++++....+.+...|+|.....+......++++++|+++|.|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 3456788888888765543322 1 1 11 4445555556789999876655544444679999999999999
Q ss_pred eCCCC
Q 026729 157 VDTPR 161 (234)
Q Consensus 157 vD~pv 161 (234)
...+.
T Consensus 92 ~~~~~ 96 (200)
T cd04722 92 GAVGY 96 (200)
T ss_pred ccCCc
Confidence 98864
No 36
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.20 E-value=5.8 Score=37.46 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=32.7
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
.+...|+.-..+.+...+..+.++++|+++|-|.+-+|.
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 456899865446777889999999999999999999997
No 37
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.20 E-value=5.5 Score=35.36 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=32.8
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCc
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~ 164 (234)
.+...|+.- .+.+...+.+++++++|+++|-|++-+|..+.
T Consensus 99 ~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~ 139 (289)
T cd02810 99 QPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGG 139 (289)
T ss_pred CeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC
Confidence 566788854 36667788899999999999999999997543
No 38
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.10 E-value=13 Score=34.37 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=67.6
Q ss_pred chHHHHHHHHhhccccc---c---ccccCCCCCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceE
Q 026729 32 DQWTLQENRNAFSRILF---R---PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT 105 (234)
Q Consensus 32 de~t~~~N~~af~r~~l---~---prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~ 105 (234)
-|.+.+--..+.+.+.. . .+.| -..+++++|+++|.++..||++|. |.. .++| ..+...+.|...+
T Consensus 15 ~e~~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~--~~~~~~~~G~Gav 86 (344)
T PRK05286 15 PETAHELTIRALKRASRTPLLSLLRQRL-TYTDPRLPVTVMGLTFPNPVGLAA-GFD----KNGE--AIDALGALGFGFV 86 (344)
T ss_pred HHHHHHHHHHHHHHhccCCchhhhhhcc-CCCCCCCceEECCEECCCCCEECC-CCC----CChH--HHHHHHHcCCCEE
Confidence 35566555666665442 1 2222 235778999999999999998855 322 3444 3344555555444
Q ss_pred eC-CCC----------------------------CCCH----HHHHhc-CCCccEEEEeeeC------CHHHHHHHHHHH
Q 026729 106 LS-SWS----------------------------TSSV----EEVAST-GPGIRFFQLYVYK------DRNVVAQLVRRA 145 (234)
Q Consensus 106 lS-s~s----------------------------s~sl----e~ia~~-~~~~~wfQlY~~~------d~~~~~~li~rA 145 (234)
+- |.+ +..+ +++.+. ..-|.+.++.-.+ ..+...++++++
T Consensus 87 v~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~ 166 (344)
T PRK05286 87 EVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKL 166 (344)
T ss_pred EeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHH
Confidence 32 222 1112 333322 1234677774321 223344555555
Q ss_pred HHcCCcEEEEeeCCCCC
Q 026729 146 ERAGFKAIALTVDTPRL 162 (234)
Q Consensus 146 ~~aG~~AlvvTvD~pv~ 162 (234)
+. ++++|.+.+=+|..
T Consensus 167 ~~-~ad~lelN~scP~~ 182 (344)
T PRK05286 167 YP-YADYFTVNISSPNT 182 (344)
T ss_pred Hh-hCCEEEEEccCCCC
Confidence 43 59999999999876
No 39
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.85 E-value=5.9 Score=36.97 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=52.2
Q ss_pred hhccccccccccCCC--CCCccceeec-----CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCH
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~-----G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sl 114 (234)
.|+++.|+|+--.=. +++|++.+|- .+.+..||+-|+|-- -+|..+|.+-++.|..+++- -.+++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT------V~~~~mA~~la~~g~~~~iH--k~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT------VGTFEMAKALASFDILTAVH--KHYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCc------cccHHHHHHHHHCCCeEEEe--cCCCH
Confidence 589999999954322 4788877664 355779999888653 37889999999999999995 34677
Q ss_pred HHHH
Q 026729 115 EEVA 118 (234)
Q Consensus 115 e~ia 118 (234)
|+-+
T Consensus 82 e~~~ 85 (346)
T PRK05096 82 EEWA 85 (346)
T ss_pred HHHH
Confidence 7744
No 40
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.09 E-value=5.7 Score=36.37 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=54.9
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcC-CceEeCCC-C-------CCCHHHHHh------c--CCCccEEEEeeeCC
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSW-S-------TSSVEEVAS------T--GPGIRFFQLYVYKD 134 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~g-i~~~lSs~-s-------s~sle~ia~------~--~~~~~wfQlY~~~d 134 (234)
||+++|||++- .+...=+.+.+.| .-++.+-+ | +....++.. . ...+.-.||. -.|
T Consensus 1 ~~~~lAPMag~------td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGV------LDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 69999998854 3455556666666 33333322 1 112222221 1 1257889996 567
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 135 RNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 135 ~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
.+...+..++++++||+.|=|..-+|+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 777888889999999999999999986
No 41
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.82 E-value=6.2 Score=38.48 Aligned_cols=108 Identities=24% Similarity=0.418 Sum_probs=70.9
Q ss_pred hhccccccccccCCC--CCCccceeec-CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~-G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
.|+++.|.|..- ++ +++|++|.+- ...+..||+-|||.-. .|..+|.|-+++|=.-++. .+.|+|+.+
T Consensus 19 t~ddv~l~p~~~-~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~--~~~~~e~~~ 89 (495)
T PTZ00314 19 TYDDVILLPGYI-DFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIH--NNCSIEEQV 89 (495)
T ss_pred CccceEeccccc-ccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEec--CCCCHHHHH
Confidence 489999999853 44 4678888776 3488899999987742 4677888888888777775 368888876
Q ss_pred hcCC------CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 119 STGP------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 119 ~~~~------~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
+... ..............-..+.++..++.++..+.|+-|
T Consensus 90 ~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~ 135 (495)
T PTZ00314 90 EEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD 135 (495)
T ss_pred HHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence 5321 111111111122223455666667789988888754
No 42
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=81.16 E-value=2.5 Score=37.66 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCccEEEEeeeCCHH----HHHHHHHHHHHc---CCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcc
Q 026729 122 PGIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~----~~~~li~rA~~a---G~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~ 194 (234)
.+..|++|-+..|.. ...+.+++|+.. |+..+-++.|.++..+|-.+..-.+-+|.+ ...
T Consensus 89 ~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg----~pI--------- 155 (248)
T cd04728 89 LGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG----SPI--------- 155 (248)
T ss_pred hCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----cCC---------
Confidence 356799999988765 456889999998 999999999999999999888433322210 000
Q ss_pred cCcccHHHHhhhcCCCCCChHHHHHHHHhCCCcccc
Q 026729 195 ANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~ 230 (234)
+++ ..-.+++-|+.|++..+.||.+
T Consensus 156 --Gsg---------~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 156 --GSG---------QGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred --CCC---------CCCCCHHHHHHHHHhCCCcEEE
Confidence 000 0122578899999988888754
No 43
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.06 E-value=7.1 Score=33.33 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=48.1
Q ss_pred CcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHH
Q 026729 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVR 143 (234)
Q Consensus 71 ~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~ 143 (234)
..||+.|||.+- . +...++++.+.|-.-.+|... .+.+++ .+....+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~--~----~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGV--S----TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCC--C----CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 469999997744 2 445667777777544443322 233333 22221233467654322134678899
Q ss_pred HHHHcCCcEEEEeeC
Q 026729 144 RAERAGFKAIALTVD 158 (234)
Q Consensus 144 rA~~aG~~AlvvTvD 158 (234)
.++++|++.|.+.-.
T Consensus 75 ~~~~~g~d~v~l~~~ 89 (236)
T cd04730 75 VALEEGVPVVSFSFG 89 (236)
T ss_pred HHHhCCCCEEEEcCC
Confidence 999999999998644
No 44
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=80.63 E-value=16 Score=33.79 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=78.7
Q ss_pred HhCChhhhhhhcCCCCchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecccccccccC--chhHHHH
Q 026729 16 EKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH--PEGEYAT 93 (234)
Q Consensus 16 ~~Lp~~~~~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~--p~gE~a~ 93 (234)
.+--......+.++....-.++++.+.+....-+|-+. +.||... .|++...+.| ..-+...
T Consensus 33 Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~----------~~f~~~~------~~v~~~~l~~~~~~~~~~~ 96 (336)
T COG2070 33 AVSNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVA----------NNFGSAP------APVNVNILVARRNAAEAGV 96 (336)
T ss_pred HHhccCCccccccccCCHHHHHHHHHHHHHhcCCcchh----------ccccccc------ccchhheecccccchHHhh
Confidence 33334555677777777778888888777666666442 2233222 5666666666 3445556
Q ss_pred HHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 94 ARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 94 AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
--.+..+|++.+..++...+-+.|+.... +...+... .+....++++++|+.+||.-
T Consensus 97 ~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v------~~~~~A~~~~~~G~d~vI~~ 154 (336)
T COG2070 97 DAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSV------ITVREALKAERAGADAVIAQ 154 (336)
T ss_pred hhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEe------CCHHHHHHHHhCCCCEEEec
Confidence 66666779999999999777777764322 43444443 46778889999999988763
No 45
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=80.42 E-value=11 Score=34.44 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=60.3
Q ss_pred CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCC-CCCCH--------HHHHh-cCCCccEEEEeeeCCHH
Q 026729 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-STSSV--------EEVAS-TGPGIRFFQLYVYKDRN 136 (234)
Q Consensus 67 G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~-ss~sl--------e~ia~-~~~~~~wfQlY~~~d~~ 136 (234)
+..+..|+++|||++. .+...-+.|.+.|..++.+-+ +..++ ..+.. ..+.+.-+||. -.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CCCHH
Confidence 3467789999999754 467777888888866654433 22221 11111 11245569994 56777
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
...+..+++++.||+.|=+..=+|+
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 7788888888899999999999996
No 46
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=79.69 E-value=20 Score=32.69 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=58.1
Q ss_pred ccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeC-CC--------------------------CCC
Q 026729 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW--------------------------STS 112 (234)
Q Consensus 60 d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lS-s~--------------------------ss~ 112 (234)
|++|+++|.++.-||++|.-... ..+|. .+...+.|...++- |. ++.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~----~~~e~--~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC----MTKEE--LEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC----CCHHH--HHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67999999999999999874431 12332 22244444443321 21 122
Q ss_pred CHH----HHHh---cCC-CccEEEEeeeCCHHHHHHHHHHHHHcC-CcEEEEeeCCCCC
Q 026729 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRL 162 (234)
Q Consensus 113 sle----~ia~---~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG-~~AlvvTvD~pv~ 162 (234)
.++ ++.+ ..+ .+...++. -.+.+...++.++++++| +++|-|.+=+|..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~ 132 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNV 132 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence 333 3321 111 34455653 345566778888899998 8999999999843
No 47
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=77.80 E-value=17 Score=34.20 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=29.1
Q ss_pred CCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 121 ~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.+.+.-..+-...|.+.+.++.+..++||++-|-|+
T Consensus 140 l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH 175 (358)
T KOG2335|consen 140 LNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH 175 (358)
T ss_pred cCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe
Confidence 345567777778899999999999999999887766
No 48
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=77.42 E-value=4.4 Score=36.76 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+.+-=.++.+||.+.+.|.++...-. ..++.+. +...-|..++| |.....+.+.+|-++||+-++
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHL----DHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEe
Confidence 33445689999999999999975432 2444432 23334666776 777778999999999999977
Q ss_pred EeeCCCCCCc
Q 026729 155 LTVDTPRLGR 164 (234)
Q Consensus 155 vTvD~pv~G~ 164 (234)
+. ...+..
T Consensus 101 ~D--gS~lp~ 108 (282)
T TIGR01858 101 ID--GSHFPF 108 (282)
T ss_pred ec--CCCCCH
Confidence 64 444443
No 49
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=76.60 E-value=6.8 Score=37.94 Aligned_cols=107 Identities=19% Similarity=0.285 Sum_probs=62.2
Q ss_pred hhccccccccccCCC--CCCccceeec-CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~-G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
.|+++.|+|..- ++ +++|++|.+- +..+..||+-|||... .+.|++.+= |+.-|+. ++. .+.+.|+..
T Consensus 10 t~ddv~l~p~~~-~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~v----T~~ela~av-a~~GglG-~i~--~~~~~e~~~ 80 (486)
T PRK05567 10 TFDDVLLVPAHS-EVLPNDVDLSTQLTKNIRLNIPLLSAAMDTV----TEARMAIAM-AREGGIG-VIH--KNMSIEEQA 80 (486)
T ss_pred CccceEeccccc-CcCcccccccchhhhhcCcCcCEEeCCCCCc----CHHHHHHHH-HhCCCCC-Eec--CCCCHHHHH
Confidence 489999999953 44 4678888775 4577899999999853 344554443 3333444 444 245666653
Q ss_pred hc------CCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 119 ST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 119 ~~------~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
+. ......-++.......-..+.++...+.++..+.|+=
T Consensus 81 ~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd 125 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVD 125 (486)
T ss_pred HHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc
Confidence 21 1111112222222333445666777777888877753
No 50
>PRK00208 thiG thiazole synthase; Reviewed
Probab=76.29 E-value=4.2 Score=36.31 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=59.2
Q ss_pred CccEEEEeeeCCHH----HHHHHHHHHHHc---CCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCccc
Q 026729 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (234)
Q Consensus 123 ~~~wfQlY~~~d~~----~~~~li~rA~~a---G~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~ 195 (234)
+..|++|-+..|.. ...+.+++|+.. |+..+-++.|.++..+|-.+..-.+-+|.+ ...
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg----~pI---------- 155 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG----API---------- 155 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----cCC----------
Confidence 56799999988765 457899999998 999999999999999999888433322210 000
Q ss_pred CcccHHHHhhhcCCCCCChHHHHHHHHhCCCcccc
Q 026729 196 NDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 196 ~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~ 230 (234)
+++ ..-.+++-|+-|++..+.||.+
T Consensus 156 -Gsg---------~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 156 -GSG---------LGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred -CCC---------CCCCCHHHHHHHHHhcCCeEEE
Confidence 000 0122477799999988888754
No 51
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=75.90 E-value=9 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=23.4
Q ss_pred CCCccEEEEeeeCC--HHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 121 GPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 121 ~~~~~wfQlY~~~d--~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
.+.+....+-..-| .+.+.+++++.+++|+++|.|+-=
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 34455566555444 566788888888888888777643
No 52
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=75.68 E-value=12 Score=34.01 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=51.5
Q ss_pred eeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH-------hcCCCccEEEEeeeCCH
Q 026729 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDR 135 (234)
Q Consensus 63 ttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia-------~~~~~~~wfQlY~~~d~ 135 (234)
|++|| +..||+.+||++. . ...++.|+.++|-.-+++... .+.|++. +..+.|.=.-+....
T Consensus 5 ~~~lg--i~~Pii~apM~~~--s----~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-- 73 (307)
T TIGR03151 5 CDLLG--IEYPIFQGGMAWV--A----TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-- 73 (307)
T ss_pred hHHhC--CCCCEEcCCCCCC--C----CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC--
Confidence 34454 4589999999852 2 356888899999888887543 4554442 222223212221111
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 136 NVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
....+.++-+.+.|++.+.++.-.
T Consensus 74 ~~~~~~~~~~~~~~v~~v~~~~g~ 97 (307)
T TIGR03151 74 PFVDELVDLVIEEKVPVVTTGAGN 97 (307)
T ss_pred CCHHHHHHHHHhCCCCEEEEcCCC
Confidence 123567777778899988875433
No 53
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=75.03 E-value=8.2 Score=34.48 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=48.2
Q ss_pred ecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCC
Q 026729 76 IAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGF 150 (234)
Q Consensus 76 iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~ 150 (234)
-||-+++++.. +|=..+.+.|++.|++++.+-+...+++.+++. .-++|+= .-.-.+.+|++.+.+.|-
T Consensus 55 ts~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~---vdilqIg--s~~~~n~~LL~~va~tgk 123 (250)
T PRK13397 55 TSAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY---LDVIQVG--ARNMQNFEFLKTLSHIDK 123 (250)
T ss_pred CCCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc---CCEEEEC--cccccCHHHHHHHHccCC
Confidence 35777777754 688889999999999999998888888888763 2366661 111223566666665553
No 54
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=74.48 E-value=6.7 Score=35.46 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+.+-=.++.+||++.+.|.++...-. .+++.++ +...-|...+| |.....+.+.+|-++||+.++
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEE
Confidence 33445689999999999999986532 3444432 22344667776 777677888999999999987
Q ss_pred Ee
Q 026729 155 LT 156 (234)
Q Consensus 155 vT 156 (234)
+.
T Consensus 98 iD 99 (276)
T cd00947 98 ID 99 (276)
T ss_pred eC
Confidence 65
No 55
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.21 E-value=6.6 Score=35.71 Aligned_cols=73 Identities=19% Similarity=0.172 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+.+-=.++.+||++.+.|.++...-. ..++.+ ++...-|..++| |.....+.+++|-++||+-++
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEe
Confidence 33445689999999999999964321 344443 223344567776 888888999999999999877
Q ss_pred EeeCCCCCCc
Q 026729 155 LTVDTPRLGR 164 (234)
Q Consensus 155 vTvD~pv~G~ 164 (234)
+ |......
T Consensus 103 ~--DgS~lp~ 110 (286)
T PRK12738 103 I--DGSHFPF 110 (286)
T ss_pred e--cCCCCCH
Confidence 6 4444443
No 56
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=73.01 E-value=9.2 Score=35.55 Aligned_cols=60 Identities=22% Similarity=0.209 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHH-HHHHHHHHHHHcCCcEE
Q 026729 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN-VVAQLVRRAERAGFKAI 153 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~-~~~~li~rA~~aG~~Al 153 (234)
+|-..+.+++.+.|++++..-+...+++.+.+.. -|+|+ .-+. .+..|++.+-+.|-..+
T Consensus 144 ~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~v---d~lqI---gAr~~~N~~LL~~va~~~kPVi 204 (335)
T PRK08673 144 EGLKLLAEAREETGLPIVTEVMDPRDVELVAEYV---DILQI---GARNMQNFDLLKEVGKTNKPVL 204 (335)
T ss_pred HHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhC---CeEEE---CcccccCHHHHHHHHcCCCcEE
Confidence 4445688999999999999988888888887653 38887 2332 34678888777665433
No 57
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=72.90 E-value=6.1 Score=35.86 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+.+.=.++.+||++.+.|.++...-. ..++.+ ++...-|...+| |.....+.+++|-++||+-++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHL----DHg~~~e~i~~Ai~~GftSVM 102 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHL----DHHEKFDDIAQKVRSGVRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEE
Confidence 34455689999999999999975431 344443 223334556665 777778999999999999877
Q ss_pred Ee
Q 026729 155 LT 156 (234)
Q Consensus 155 vT 156 (234)
+.
T Consensus 103 ~D 104 (284)
T PRK09195 103 ID 104 (284)
T ss_pred eC
Confidence 64
No 58
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.40 E-value=13 Score=36.16 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=64.1
Q ss_pred hhccccccccccCCC---CCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 42 AFSRILFRPRILIDV---SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 42 af~r~~l~prvL~dv---~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
.|+++.|.|..- ++ +++|++|+ ++..+..||+-|||-.. .|..+|.+-++.|-.-++- -+.+.++.+
T Consensus 14 tfddvll~p~~~-~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih--~nl~~~~q~ 83 (479)
T PRK07807 14 TYDDVFLVPSRS-DVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLP--QDIPIDVVA 83 (479)
T ss_pred CccceEeccccc-CccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEee--CCCCHHHHH
Confidence 499999999874 44 36789987 58899999999998643 3677777777777444443 234555444
Q ss_pred hcC---C-CccE-EEE-eeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 119 STG---P-GIRF-FQL-YVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 119 ~~~---~-~~~w-fQl-Y~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
+.. . .... -.. .+..+ .-..+.+++..+.++..++|+-
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d-~tv~eA~~~m~~~~~s~l~VVD 127 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPD-DTVGDALALLPKRAHGAVVVVD 127 (479)
T ss_pred HHHhhcccccccccCCeEECCC-CCHHHHHHHHHhcCCceEEEEC
Confidence 321 1 1001 011 11222 2345566666777888887753
No 59
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=72.36 E-value=3 Score=37.83 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+-=.++.+||.+.+.|.++...-+ .+++.+ ++...-|.+++| |.....+.+++|-++||+-+++.
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCccccccc
Confidence 344689999999999999975432 223333 223456788888 77777899999999999998764
Q ss_pred e
Q 026729 157 V 157 (234)
Q Consensus 157 v 157 (234)
-
T Consensus 104 g 104 (287)
T PF01116_consen 104 G 104 (287)
T ss_dssp -
T ss_pred C
Confidence 3
No 60
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=71.74 E-value=35 Score=31.34 Aligned_cols=89 Identities=18% Similarity=0.088 Sum_probs=57.8
Q ss_pred CcccCcceEecccccccccCchhHHHHHHHHHhcCC-ceEeCCC-CC-----CCHHHHHhcC--CCccEEEEeeeCCHHH
Q 026729 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSW-ST-----SSVEEVASTG--PGIRFFQLYVYKDRNV 137 (234)
Q Consensus 67 G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi-~~~lSs~-ss-----~sle~ia~~~--~~~~wfQlY~~~d~~~ 137 (234)
+.....|+++|||++. .+...=+-|.+.|. ..+.+-+ +. ....+..... ..+...||. -.|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~------td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDW------TDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCC------cCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 4566779999998854 24444455666664 2332222 11 1122222222 257889995 467777
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 138 VAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
..+..++++++||+.|=|...+|..
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~ 103 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSD 103 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHH
Confidence 8888899999999999999999875
No 61
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=71.72 E-value=19 Score=27.47 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=42.1
Q ss_pred CCceEeCCCCCCCHHHHHhcCC-----------CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 101 GTIMTLSSWSTSSVEEVASTGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 101 gi~~~lSs~ss~sle~ia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+-.++.=......+|++.+..| ...|+-+...-+++...+++++.+++|++.|+++
T Consensus 28 ~~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 28 GKVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred heeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 4444544555667777765322 1369888888899999999999999999999885
No 62
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=71.71 E-value=9.7 Score=35.65 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=44.8
Q ss_pred cccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 026729 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAI 153 (234)
Q Consensus 81 ~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Al 153 (234)
++++.. +|-..+.+.|.+.|++++.+-+...+++.+.+.. -++|+= .-.-.+.+|++.+.+.|-..+
T Consensus 163 f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~v---d~lkI~--s~~~~n~~LL~~~a~~gkPVi 229 (360)
T PRK12595 163 FQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYV---DVIQIG--ARNMQNFELLKAAGRVNKPVL 229 (360)
T ss_pred ccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhC---CeEEEC--cccccCHHHHHHHHccCCcEE
Confidence 344433 6667889999999999999888888888887653 366662 111123577777777665433
No 63
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.69 E-value=7.4 Score=35.30 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+-=.++.+||++.+.|.++...-. ..++.++ +...-|..++| |.....+.+.+|-++||+.+++.
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM~D 104 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHL----DHGTDFEQVMKCIRNGFTSVMID 104 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEEe
Confidence 444578999999999999975432 3444442 23334566666 77777788999999999987764
Q ss_pred eCCCCCCc
Q 026729 157 VDTPRLGR 164 (234)
Q Consensus 157 vD~pv~G~ 164 (234)
...+..
T Consensus 105 --gS~lp~ 110 (284)
T PRK12857 105 --GSKLPL 110 (284)
T ss_pred --CCCCCH
Confidence 444443
No 64
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=71.20 E-value=30 Score=30.85 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
..+.+++++.|.|+++|+.-..+++|+..+ ++...+.|.+-|+|+
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~A---------------------ve~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYA---------------------AEYILSSGNGNVILC 166 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHH---------------------HHHHHHcCCCcEEEE
Confidence 357888888888888888877788888655 455567788777763
No 65
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=70.73 E-value=18 Score=35.17 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=67.8
Q ss_pred hhccccccccccCCC---CCCccceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 42 AFSRILFRPRILIDV---SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 42 af~r~~l~prvL~dv---~~~d~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
.|+++.|+|..- ++ +++|++|. +..++..||+-|||-- =-|..+|.|-++.|-.-++-. +.++|+-+
T Consensus 13 tfddvll~p~~~-~~~~~~~v~~~t~-~~~~l~~P~vsa~mdt------vTe~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 13 TYNDVFMVPSRS-EVGSRFDVDLSTA-DGTGTTIPLVVANMTA------VAGRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CccceEEccCcc-CccCCCceeeccc-ccCccccceeeccchh------hHHHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 599999999864 55 36788888 6689999999999752 358888888888888888765 57787765
Q ss_pred hcCC----C----ccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 119 STGP----G----IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 119 ~~~~----~----~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+... . ..-..+ ..+. -..+.++...+.+...++|+
T Consensus 83 e~v~~VKv~eim~~~pvtv--~p~~-tI~eA~~lm~~~~~~~~vVv 125 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITL--APHD-TVSDAMALIHKRAHGAAVVI 125 (475)
T ss_pred HHHhhcchhhccccCCeEE--CCCC-CHHHHHHHHHhcCCeEEEEE
Confidence 4211 1 111122 2232 23455555566777666654
No 66
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.63 E-value=8.4 Score=34.95 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=47.2
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+.+-=.++.+||.+.+.|.++...-. ..++.+ ++...-|..++| |.....+.+.+|-++||+.++
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHL----DHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEE
Confidence 33444688999999999999975431 234433 222334556665 777777899999999999766
Q ss_pred EeeCCCCC
Q 026729 155 LTVDTPRL 162 (234)
Q Consensus 155 vTvD~pv~ 162 (234)
+ |...+
T Consensus 103 i--DgS~l 108 (284)
T PRK12737 103 I--DGSHL 108 (284)
T ss_pred e--cCCCC
Confidence 5 44443
No 67
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=70.59 E-value=36 Score=30.48 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=58.4
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHHH-------hcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~ia-------~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|..+.|+.-.+-.+.++=..+++-..+.|+--+ .+|.+ +.|.||-. +... -+...++- . +-..
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 4566778776665677777788888888887544 44443 34555532 2222 35577774 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEeeC
Q 026729 138 VAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTvD 158 (234)
+.++.++|+++|++++++.--
T Consensus 83 ~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 889999999999999999653
No 68
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=69.95 E-value=11 Score=34.28 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC-----CCHHHHHh-------cC--CCccEEEEeeeCCHHHHHHHHHHHHHcCCc
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST-----SSVEEVAS-------TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss-----~sle~ia~-------~~--~~~~wfQlY~~~d~~~~~~li~rA~~aG~~ 151 (234)
+.+-=.++.+||++.+.|.++..... ..++.++. .. .-|..++| |.....+.+++|-++||+
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~Gft 102 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHL----DHGASEEDCAQAVKAGFS 102 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEEC----CCCCCHHHHHHHHHcCCC
Confidence 33445689999999999999975442 24555432 23 23455655 888788999999999999
Q ss_pred EEEEeeCCCCCCc
Q 026729 152 AIALTVDTPRLGR 164 (234)
Q Consensus 152 AlvvTvD~pv~G~ 164 (234)
.+++. ...+..
T Consensus 103 SVMiD--gS~lp~ 113 (288)
T TIGR00167 103 SVMID--GSHEPF 113 (288)
T ss_pred EEEec--CCCCCH
Confidence 98764 444443
No 69
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.83 E-value=38 Score=30.59 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=63.7
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|.++.|+.-.+=.+.++=..+++-..+.|+--+ .+|.+ +.|.||- .+... -+...++- .+-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHH
Confidence 5677888876665677777788888888887544 44433 3455542 22222 34567773 36677
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccC
Q 026729 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f 173 (234)
+.+++++|+++|++++++.--.-. .-.+..+..-|
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP~y~-~~~~~~i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPPYLT-EAPQEGLAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHH
Confidence 889999999999999998654322 22345555444
No 70
>PRK06801 hypothetical protein; Provisional
Probab=68.97 E-value=12 Score=33.93 Aligned_cols=71 Identities=23% Similarity=0.176 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 026729 87 PEGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 87 p~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alvv 155 (234)
.+-=.++.+||.+.+.|.++....+ .+++.+ ++...-|.-.+| |.....+.+++|-++||+.+.+
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHl----DH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNL----DHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCcEEEE
Confidence 3444578888888888888865432 233333 222233444444 6666677788888888888777
Q ss_pred eeCCCCCC
Q 026729 156 TVDTPRLG 163 (234)
Q Consensus 156 TvD~pv~G 163 (234)
|.....
T Consensus 104 --D~S~l~ 109 (286)
T PRK06801 104 --DGSTLE 109 (286)
T ss_pred --cCCCCC
Confidence 554444
No 71
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=68.02 E-value=30 Score=33.87 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=64.9
Q ss_pred HhhccccccccccCCC--CCCccceeec-CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHH
Q 026729 41 NAFSRILFRPRILIDV--SKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (234)
Q Consensus 41 ~af~r~~l~prvL~dv--~~~d~sttl~-G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~i 117 (234)
-.|+++.|.|..- ++ +++|++|.+- ...+..||+-|||.... |..+|.|-+++|-.-++.. +.+.|+.
T Consensus 22 ltfddv~l~p~~~-~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q 92 (505)
T PLN02274 22 YTYDDVIFHPGYI-DFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQ 92 (505)
T ss_pred CCccceEeccccc-CcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHH
Confidence 3599999999853 33 5667776664 34677899999986432 5566677777765545653 4566665
Q ss_pred HhcC------CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 118 ASTG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 118 a~~~------~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
.+.. .....-.........-..+.++...+.+++.++|+-|
T Consensus 93 ~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~ 139 (505)
T PLN02274 93 AAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTET 139 (505)
T ss_pred HHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeC
Confidence 4321 1000111111122233455566667889999888744
No 72
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.95 E-value=16 Score=32.68 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=46.1
Q ss_pred ccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHH-HHHHHHHHHHcCC
Q 026729 78 PTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV-VAQLVRRAERAGF 150 (234)
Q Consensus 78 P~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~-~~~li~rA~~aG~ 150 (234)
|-+..++. .+|-..+.+.+++.|++++..-+...+++.+.+.. -|+|+ .-+.. ..++++.+.+.|.
T Consensus 69 ~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v---d~~kI---ga~~~~n~~LL~~~a~~gk 135 (266)
T PRK13398 69 PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA---DMLQI---GSRNMQNFELLKEVGKTKK 135 (266)
T ss_pred CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC---CEEEE---CcccccCHHHHHHHhcCCC
Confidence 44555553 56777899999999999999988888888887653 38887 33332 3467777765554
No 73
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=67.40 E-value=12 Score=34.43 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=46.2
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAI 153 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~Al 153 (234)
+.+-=.++.+||.+.+.|.++..... ..++.+ ++..+ -|..+.| |.....+.+++|-++||+-+
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHL----DHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEEC----CCCCCHHHHHHHHHcCCCEE
Confidence 33445689999999999999975442 233322 22233 3455555 87778899999999999998
Q ss_pred EEe
Q 026729 154 ALT 156 (234)
Q Consensus 154 vvT 156 (234)
++.
T Consensus 102 M~D 104 (307)
T PRK05835 102 MID 104 (307)
T ss_pred EEe
Confidence 765
No 74
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.33 E-value=12 Score=34.96 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=45.7
Q ss_pred cccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHH-HHHHHHHHHHHcCC
Q 026729 79 TAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN-VVAQLVRRAERAGF 150 (234)
Q Consensus 79 ~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~-~~~~li~rA~~aG~ 150 (234)
-+++++. .+|=..+.+++.+.|++++..-+....++.+.+.. -++|+ ..+. .+.+|++.+.+.|-
T Consensus 144 ~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~---d~lqI---ga~~~~n~~LL~~va~t~k 209 (352)
T PRK13396 144 YAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVA---DVIQV---GARNMQNFSLLKKVGAQDK 209 (352)
T ss_pred cccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhC---CeEEE---CcccccCHHHHHHHHccCC
Confidence 4455554 55666789999999999998888888888887653 37776 2222 23678888777764
No 75
>PRK08227 autoinducer 2 aldolase; Validated
Probab=66.91 E-value=31 Score=31.01 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 93 TARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.||.|++.|.=++=-.+...++++|.++++-|.-+.==...+.+...++++.|-++|+..+++.
T Consensus 163 aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 163 ATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred HHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 5566666665444444433466666665543322211111123334566666667777776553
No 76
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=66.40 E-value=47 Score=29.57 Aligned_cols=85 Identities=14% Similarity=0.016 Sum_probs=57.8
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|.++.|+.-.+-.+.++=....+-..+.|+--+ .+|.+ +.|.||- .+..+ -+.+.++-- .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 4667788876666677777888888888887544 34443 4455542 22223 245666532 35567
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026729 138 VAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTv 157 (234)
+.++.+.|+++|++++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 88999999999999999974
No 77
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=66.06 E-value=74 Score=28.72 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=70.2
Q ss_pred HHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeee-----CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchh
Q 026729 93 TARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY-----KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~-----~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re 166 (234)
+..+|+++.+|++|---=..++|.+..+.. |..++|+=-. .+-+.++++.+.|++.|+. |-.|.-..|.-+
T Consensus 66 ~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~---veaE~ghlG~~d 142 (281)
T PRK06806 66 MVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT---VEAEIGRVGGSE 142 (281)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe---EEEEeeeECCcc
Confidence 445677788998887555568888876533 6778987432 1224567788888888865 455555556444
Q ss_pred hHhhccCCCCCcCcccccccc-ccCCCcccCcccH--HHHhh-hcCCCCCChHHHHHHHHhCCCcccc
Q 026729 167 ADIKNRFTLPPFLTLKNFQGL-DLGKMDEANDSGL--AAYVA-GQIDRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 167 ~d~r~~f~~p~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~~~~~tW~di~wlr~~w~l~~~~ 230 (234)
.+... .+.+..+.... .+.........++ +...+ ....|.++++-|+.|++..++|++.
T Consensus 143 ~~~~~-----~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~ 205 (281)
T PRK06806 143 DGSED-----IEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVL 205 (281)
T ss_pred CCccc-----ccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEE
Confidence 22110 01111111100 0000000000000 00000 0124789999999999999999875
No 78
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=65.62 E-value=6.8 Score=28.48 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=35.3
Q ss_pred CCCCCHHHHHhcCC-----------CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 109 WSTSSVEEVASTGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 109 ~ss~sle~ia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
....++|++.+..| +..|+=+...=+++...++|++.+++|++.|+++
T Consensus 12 vp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 12 VPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred CCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 34567788776432 2468777776677788999999999999999885
No 79
>PRK08185 hypothetical protein; Provisional
Probab=65.31 E-value=13 Score=33.68 Aligned_cols=22 Identities=5% Similarity=-0.005 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHhCCCcccc
Q 026729 209 DRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 209 ~~~~tW~di~wlr~~w~l~~~~ 230 (234)
.|.++|+-|+.|++..+.|++.
T Consensus 182 kp~L~~e~l~~I~~~~~iPLVl 203 (283)
T PRK08185 182 KPELQMDLLKEINERVDIPLVL 203 (283)
T ss_pred CCCcCHHHHHHHHHhhCCCEEE
Confidence 5789999999999999999875
No 80
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=65.30 E-value=49 Score=29.20 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=50.2
Q ss_pred CcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCC-------------CC----HHHHHhcCCCccEEEEeeeC
Q 026729 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-------------SS----VEEVASTGPGIRFFQLYVYK 133 (234)
Q Consensus 71 ~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss-------------~s----le~ia~~~~~~~wfQlY~~~ 133 (234)
..||+++=.+ . .++.=...|+.+.++|+-++-=+.+. .. +++|++...-+.+..+=..-
T Consensus 98 ~~pvi~si~g-~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVGG-S---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEecc-C---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676664322 2 23333457777777777655322221 01 23333333445677776555
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 026729 134 DRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 134 d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+.+...++++.++++|+++|+++
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 66678899999999999999987
No 81
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=65.09 E-value=32 Score=24.86 Aligned_cols=55 Identities=29% Similarity=0.368 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCc
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~ 164 (234)
|.|||+ +++.++.+|+-.+-+|.+ .......+++++..+ .|+ -+++|.|.|-...
T Consensus 19 s~DGe~-ia~~~~~~G~~~iRGSs~---------------------rgg~~Alr~~~~~lk-~G~-~~~itpDGPrGP~ 73 (74)
T PF04028_consen 19 SRDGEL-IARVLERFGFRTIRGSSS---------------------RGGARALREMLRALK-EGY-SIAITPDGPRGPR 73 (74)
T ss_pred CcCHHH-HHHHHHHcCCCeEEeCCC---------------------CcHHHHHHHHHHHHH-CCC-eEEEeCCCCCCCC
Confidence 778887 577888888888887611 011234567777666 676 6799999996443
No 82
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=64.69 E-value=5.5 Score=34.90 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCC
Q 026729 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (234)
Q Consensus 133 ~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
.|.+...+.+++.+++|+++|=+.+ | |+-|- ..+...++ ...+.+..-.+-..
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--P------------fsdPv------~DG~~I~~-------a~~~al~~g~~~~~ 63 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--P------------FSDPV------ADGPVIQA-------ASERALANGVTLKD 63 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--C------------CCCCC------CCCHHHHH-------HHHHHHHcCCCHHH
Confidence 4667788999999999999876654 4 33331 00000000 00011111122234
Q ss_pred ChHHHHHHHHhCCCccccccc
Q 026729 213 SWKNILCLYQDFSFECDVMLY 233 (234)
Q Consensus 213 tW~di~wlr~~w~l~~~~~~~ 233 (234)
..+.++.+|+..+.|+.+|.|
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y 84 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGY 84 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEe
Confidence 567899999999999999988
No 83
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=64.54 E-value=27 Score=32.13 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
.|+.-...|+-+.+.| .-++=-.--||...|...+.|-.++ +|+++..++++..+++.- -+-|||=
T Consensus 77 dp~~l~eaA~~~~~~g-~~~IdlN~GCP~~~V~~~g~Ga~Ll-----~~p~lv~~iv~a~~~av~-~iPVTVK 142 (323)
T COG0042 77 DPELLAEAAKIAEELG-ADIIDLNCGCPSPKVVKGGAGAALL-----KNPELLAEIVKAMVEAVG-DIPVTVK 142 (323)
T ss_pred CHHHHHHHHHHHHhcC-CCEEeeeCCCChHHhcCCCcchhhc-----CCHHHHHHHHHHHHHhhC-CCCeEEE
Confidence 4555667888888888 4444444557777777654443333 477777777777765532 3444443
No 84
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=64.03 E-value=5.7 Score=37.41 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred ccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHH
Q 026729 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRA 145 (234)
Q Consensus 69 ~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA 145 (234)
.+++||+||.|++..| -+++-.++|+||+.+|+.+..+-.. .+.|+.... .....+|+ -...-+.+.+.+++|
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~-~sg~fGv~~~~l~~a 135 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQI-ASGRFGVRPEYLKQA 135 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHCC-
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEc-CCCCCCCCHHHhcCC
Confidence 4789999999999876 5578899999999999888887654 444444322 22237784 445556666666554
No 85
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.16 E-value=14 Score=33.56 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+-=.++.+||.+.+.|.++...-. ..++.+. +...-|..+.| |.....+.+++|-++||+.+++
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHL----DH~~~~e~i~~Ai~~GftSVM~- 103 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHL----DHGKTFEDVKQAVRAGFTSVMI- 103 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----cCCCCHHHHHHHHHcCCCEEEE-
Confidence 444578899999999999875322 2333332 22223444544 7777778888888999998888
Q ss_pred eCCCCC
Q 026729 157 VDTPRL 162 (234)
Q Consensus 157 vD~pv~ 162 (234)
|....
T Consensus 104 -DgS~l 108 (283)
T PRK07998 104 -DGAAL 108 (283)
T ss_pred -eCCCC
Confidence 55443
No 86
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=62.92 E-value=20 Score=31.23 Aligned_cols=71 Identities=23% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEE-------------------------------eeeCCHHHHH
Q 026729 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQL-------------------------------YVYKDRNVVA 139 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQl-------------------------------Y~~~d~~~~~ 139 (234)
..+.+.-.+.+-..++||++...++.+.+..|...--.| |.......+.
T Consensus 119 ~~v~~~l~~~~~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (237)
T cd08585 119 RRVLAALKDYKGPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRPDFIAYHLDDLPN 198 (237)
T ss_pred HHHHHHHHhcCCCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCCCEEEeChhhCcC
Confidence 345555555566778888887777777765442211111 1111123456
Q ss_pred HHHHHHHHc-CCcEEEEeeCCCC
Q 026729 140 QLVRRAERA-GFKAIALTVDTPR 161 (234)
Q Consensus 140 ~li~rA~~a-G~~AlvvTvD~pv 161 (234)
+++++++++ |.+..+.|||.+.
T Consensus 199 ~~v~~~~~~~G~~v~vWTVnd~~ 221 (237)
T cd08585 199 PFVTLARALLGMPVIVWTVRTEE 221 (237)
T ss_pred HHHHHHHHhcCCcEEEEeCCCHH
Confidence 789999999 9999999999863
No 87
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=61.76 E-value=24 Score=31.39 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHH-HHHHHHHHHHHcCCcEE
Q 026729 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN-VVAQLVRRAERAGFKAI 153 (234)
Q Consensus 87 p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~-~~~~li~rA~~aG~~Al 153 (234)
.+|=..+.+.|++.|++++.+-+...+++.+.+.. -|+|+ ..+. ...+|++.+.+.|-..+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~---d~lkI---~s~~~~n~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA---DILQI---GARNMQNFELLKEVGKQGKPVL 136 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC---CEEEE---CcccccCHHHHHHHhcCCCcEE
Confidence 45666799999999999999999999999887653 38887 2222 33578888887776443
No 88
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=61.71 E-value=17 Score=32.85 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=50.4
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHH-------HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~i-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+.+-=.++.+||++.+.|.++....+ .+++.+ ++...-|..++| |.....+.+++|-++|++.+.
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHl----DH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHF----DHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEE
Confidence 34455689999999999999986543 234432 222334556665 777778899999999998766
Q ss_pred EeeCCCCCCchh
Q 026729 155 LTVDTPRLGRRE 166 (234)
Q Consensus 155 vTvD~pv~G~Re 166 (234)
+ |......+|
T Consensus 103 ~--d~s~~~~~e 112 (281)
T PRK06806 103 F--DGSHLPLEE 112 (281)
T ss_pred E--cCCCCCHHH
Confidence 5 444444443
No 89
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=61.24 E-value=55 Score=31.37 Aligned_cols=109 Identities=25% Similarity=0.381 Sum_probs=63.1
Q ss_pred hhccccccccccCCC--CCCccceeec-CcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 42 AFSRILFRPRILIDV--SKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 42 af~r~~l~prvL~dv--~~~d~sttl~-G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
.|+++.|.|..- ++ +++|++|.+= +.++..||+-|||... -+.|++.+ -|...|+.. +- -+.|+|+-+
T Consensus 3 t~ddv~l~p~~~-~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtv----Te~ema~~-ma~~gg~Gv-I~--~n~~~e~q~ 73 (450)
T TIGR01302 3 TFDDVLLLPGFI-DVEPDDVDLSTRITRNIKLNIPILSSPMDTV----TESRMAIA-MAREGGIGV-IH--RNMSIEEQA 73 (450)
T ss_pred CccceEeccccc-ccCccccccccccccccCcCCCeeecCCCcc----CHHHHHHH-HHhcCCCce-ee--cCCCHHHHH
Confidence 489999999853 33 5678888887 7899999999998742 34454433 222223333 32 145565543
Q ss_pred hcC------CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 119 STG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 119 ~~~------~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
+.. ....--++.......-..+.++...+.+++.+.|+-+.
T Consensus 74 ~~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~ 120 (450)
T TIGR01302 74 EQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDG 120 (450)
T ss_pred HHHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC
Confidence 211 11111122222222334566777778899998887553
No 90
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=60.37 E-value=62 Score=29.60 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=49.4
Q ss_pred CcceEecccccccccCchhHHHHHHHHHhcCCceE---eCCCCCC------C--------HHHHHhcCCCccEEEEeeeC
Q 026729 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWSTS------S--------VEEVASTGPGIRFFQLYVYK 133 (234)
Q Consensus 71 ~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~---lSs~ss~------s--------le~ia~~~~~~~wfQlY~~~ 133 (234)
..|++++=.| . .++.-...|+.+.++|.-++ +|..... . ++.|.++..-|.+..|-+
T Consensus 99 ~~pvi~si~g-~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLNG-V---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeCC-C---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 5688776433 1 23333567888888775544 3321111 1 233333334578888743
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 134 DRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 134 d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
+-....++++.++++|+++|+++==
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcC
Confidence 3335678999999999999998543
No 91
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=59.85 E-value=12 Score=27.28 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=21.0
Q ss_pred CH-HHHHHHHHHHHHcCCcEEE-EeeCCC
Q 026729 134 DR-NVVAQLVRRAERAGFKAIA-LTVDTP 160 (234)
Q Consensus 134 d~-~~~~~li~rA~~aG~~Alv-vTvD~p 160 (234)
|. +..++|.++|++.|+.|+| +.+|+.
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 54 4568999999999999975 666665
No 92
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=59.20 E-value=44 Score=29.22 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=69.2
Q ss_pred hhhcCCCCchHHHHHHHHhhccccc---cccccCCC--CCCccc-eeecCcccCcceEecccccccccCchhHHHHHHHH
Q 026729 24 DYYASGAEDQWTLQENRNAFSRILF---RPRILIDV--SKIDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAA 97 (234)
Q Consensus 24 ~Yi~gGa~de~t~~~N~~af~r~~l---~prvL~dv--~~~d~s-ttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA 97 (234)
.-++||-+.-.++..-...++=+.| .|.--... ..+..+ +......+..|+..-|+... ..+-+..+.++.
T Consensus 5 ~l~SGGKDS~~al~~a~~~~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---~e~~~e~l~~~l 81 (223)
T TIGR00290 5 ALISGGKDSCLALYHALKEHEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---EEDEVEELKGIL 81 (223)
T ss_pred EEecCcHHHHHHHHHHHHhCeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC---ccHHHHHHHHHH
Confidence 4568888888887664433332222 22110000 011111 22334555667665443322 223334577777
Q ss_pred HhcCCceEeCCC-CC----CCHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 98 SAAGTIMTLSSW-ST----SSVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 98 ~~~gi~~~lSs~-ss----~sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
.+.|+-.+++-. .+ .-+|.+++..+ .|.|- .|+ .+++++..++|++++++.|++..+
T Consensus 82 ~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~-----~~~---~~ll~e~i~~G~~aiIv~v~a~gL 147 (223)
T TIGR00290 82 HTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLWH-----RDP---EKLMEEFVEEKFEARIIAVAAEGL 147 (223)
T ss_pred HHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEeccccC-----CCH---HHHHHHHHHcCCeEEEEEEecCCC
Confidence 888876666422 22 23456665443 34552 343 468888889999999999998654
No 93
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.15 E-value=59 Score=29.81 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=55.3
Q ss_pred ceEecccccccccCchhHHHHHHHHHhcCC-ceEeCCC-CC-----CCHHHHHhcC--CCccEEEEeeeCCHHHHHHHHH
Q 026729 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSW-ST-----SSVEEVASTG--PGIRFFQLYVYKDRNVVAQLVR 143 (234)
Q Consensus 73 Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi-~~~lSs~-ss-----~sle~ia~~~--~~~~wfQlY~~~d~~~~~~li~ 143 (234)
||++|||++. .+...=+.+++.|. -++.+-+ +. ....+..... ..+.-+||. -.|.+...+..+
T Consensus 2 ~~~lAPM~g~------Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDW------TDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 7889998754 34555666777776 2333322 11 1122232222 257889996 577788888899
Q ss_pred HHHHcCCcEEEEeeCCCCC
Q 026729 144 RAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 144 rA~~aG~~AlvvTvD~pv~ 162 (234)
.+++.||+.|=|..-+|+.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD 93 (318)
T ss_pred HHHhCCCCEEEEECCCCHH
Confidence 9999999999999999964
No 94
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=59.12 E-value=13 Score=25.53 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCc
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPRLGR 164 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv~G~ 164 (234)
...+++++|++.|++++++|==..+.|.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~~ 43 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFGA 43 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccCH
Confidence 3679999999999999999855444443
No 95
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=58.44 E-value=80 Score=28.31 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=61.7
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcC-Cc--eEeCCCC---CCCHHHHH-------hcCC--CccEEEEeeeCCHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TI--MTLSSWS---TSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~g-i~--~~lSs~s---s~sle~ia-------~~~~--~~~wfQlY~~~d~~ 136 (234)
.|..+.|+--.+-.+.++=....+-..+.| +- ++.+|.+ +.|.||-. +... -+..+++-- .+-.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHH
Confidence 356777877666567777778888888887 43 4444433 45666532 2222 244666642 3456
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f 173 (234)
.+.++.+.|+++|++++++.. ......-+.++..-|
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~-P~y~~~~~~~i~~yf 119 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT-PFYYKFSFPEIKHYY 119 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC-CcCCCCCHHHHHHHH
Confidence 678999999999999999954 222232344454444
No 96
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=58.18 E-value=35 Score=30.73 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=25.7
Q ss_pred CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.-|.+..|- .|-....++++.++++|+++|+++
T Consensus 168 ~~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 168 KIPVIAKLT--PNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred CCCeEEECC--CCchhHHHHHHHHHHcCCCEEEEe
Confidence 356788874 455567899999999999998864
No 97
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=58.03 E-value=32 Score=31.31 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCceEeCCCCCCC--HHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 91 YATARAASAAGTIMTLSSWSTSS--VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~s--le~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
....+.+.++|++++..+..... ++++.+. +...+-|+ -+.+..++|+++|++.|+++-
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~-g~~v~~~v-------~s~~~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKEN-GVKVIPVV-------ASVALAKRMEKAGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHc-CCEEEEEc-------CCHHHHHHHHHcCCCEEEEEC
Confidence 34667777889998876654321 2333333 22334443 234567899999999999854
No 98
>PLN02826 dihydroorotate dehydrogenase
Probab=58.02 E-value=24 Score=33.64 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=34.4
Q ss_pred CchHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecc
Q 026729 31 EDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAP 78 (234)
Q Consensus 31 ~de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP 78 (234)
+-|...+--..+++.. +.|+. .....++++++++|.+++-||++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAA 91 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAA 91 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECc
Confidence 6677777778877743 44532 2245678999999999999999975
No 99
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=57.13 E-value=93 Score=27.85 Aligned_cols=99 Identities=11% Similarity=0.036 Sum_probs=63.4
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|.++.|+--.+-.+.++=..+++-..+.|+--+ .+|.+ +.|.||- .+... -+.+.++- .+-..
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 4667778766665677777888888888886554 44544 3455543 22222 35678874 35667
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccC
Q 026729 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f 173 (234)
+.++.+.|+++|++++++.--. .....+..+..-|
T Consensus 88 ai~~a~~a~~~Gadav~~~pP~-y~~~s~~~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLPPY-LINGEQEGLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEECCCC-CCCCCHHHHHHHH
Confidence 7888999999999999885532 2333455555444
No 100
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=57.08 E-value=82 Score=28.33 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=0.0
Q ss_pred eeecCcccCcceEecccccccccCc-hhHHHHHHHHHhcCCceEeCCCCCCC----------------------------
Q 026729 63 TTVLGFKISMPIMIAPTAMQKMAHP-EGEYATARAASAAGTIMTLSSWSTSS---------------------------- 113 (234)
Q Consensus 63 ttl~G~~~~~Pi~iaP~g~~~l~~p-~gE~a~AraA~~~gi~~~lSs~ss~s---------------------------- 113 (234)
++++|.++.-||++|. .+ +......+.+.+.|..+++--.-+..
T Consensus 1 ~~~~Gl~l~nPi~~As-------g~~~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~ 73 (294)
T cd04741 1 VTPPGLTISPPLMNAA-------GPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGL 73 (294)
T ss_pred CccCCeeCCCCCEECC-------CCCCCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCH
Q ss_pred ---HHHHHhc------CCCccEEEEeeeCCHHHHHHHHHHHHHc---CCcEEEEeeCCCC
Q 026729 114 ---VEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPR 161 (234)
Q Consensus 114 ---le~ia~~------~~~~~wfQlY~~~d~~~~~~li~rA~~a---G~~AlvvTvD~pv 161 (234)
++++.+. ...+...|+.-. .+...+.+++.++. |+++|-|.+=+|.
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn 131 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPN 131 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCC
No 101
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=57.04 E-value=26 Score=30.25 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred HHHHHHhcCCceEeC-CCCC----CCHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 026729 93 TARAASAAGTIMTLS-SWST----SSVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (234)
Q Consensus 93 ~AraA~~~gi~~~lS-s~ss----~sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G 163 (234)
+.+++.+ |+..++. +..+ ..+|.++...+ .|.|. .| ..++++.+.+.|++++++.|++..++
T Consensus 79 l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~PLw~-----~~---~~el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 79 LKELKRE-GVEGIVTGAIASRYQKSRIERICEELGLKVFAPLWG-----RD---QEEYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHc-CCCEEEECCcccHhHHHHHHHHHHhCCCeEEeehhc-----CC---HHHHHHHHHHCCCEEEEEEEecCCCC
Confidence 3444343 8875554 3332 34556664433 24443 34 34688999999999999999986544
No 102
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=56.99 E-value=22 Score=33.29 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAI 153 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~Al 153 (234)
+.+-=.++.+||.+.+.|.+|....+ ..++.+. +..+ -|..+.| |.....+.+.+|-++||+.+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHL----DHg~~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSV 100 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEE
Confidence 33445688999999999999875432 2333332 2233 3455555 77777888999999999988
Q ss_pred EEe
Q 026729 154 ALT 156 (234)
Q Consensus 154 vvT 156 (234)
++.
T Consensus 101 MiD 103 (347)
T TIGR01521 101 MMD 103 (347)
T ss_pred eec
Confidence 765
No 103
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=56.11 E-value=67 Score=29.34 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=23.4
Q ss_pred ccEEEEeee-CCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 124 IRFFQLYVY-KDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 124 ~~wfQlY~~-~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
|.+..+-.. .+.+...++++.++++|+++|.|+
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 566765432 222446789999999999998876
No 104
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=54.52 E-value=28 Score=32.62 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAI 153 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~Al 153 (234)
+.+-=.++.+||++.+.|.+|..... ..++.+. +..+ -|..+.| |.....+.+++|-++||+.+
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHL----DHg~~~e~i~~Ai~~GFtSV 102 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQ----DHGNSPATCQSAIRSGFTSV 102 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEC----CCCCCHHHHHHHHhcCCCEE
Confidence 34445678999999999999875432 2333322 2232 3444544 77777888999999999987
Q ss_pred EEe
Q 026729 154 ALT 156 (234)
Q Consensus 154 vvT 156 (234)
++.
T Consensus 103 MiD 105 (347)
T PRK13399 103 MMD 105 (347)
T ss_pred EEe
Confidence 765
No 105
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=54.46 E-value=31 Score=31.37 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC-----CCHHHH-------HhcCC--CccEEEEeeeCCHHHHHHHHHHHHHcCCc
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST-----SSVEEV-------ASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss-----~sle~i-------a~~~~--~~~wfQlY~~~d~~~~~~li~rA~~aG~~ 151 (234)
+.+.=.++.+||++.+.|.++...-. .+++.+ ++... -|..+.| |.....+.+.+|-++||+
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~Gft 102 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHL----DHGSSFEKCKEAIDAGFT 102 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcCCC
Confidence 33444678899999999998875432 233332 22222 2445554 777777888888888998
Q ss_pred EEEEe
Q 026729 152 AIALT 156 (234)
Q Consensus 152 AlvvT 156 (234)
-+++.
T Consensus 103 SVM~D 107 (285)
T PRK07709 103 SVMID 107 (285)
T ss_pred EEEEe
Confidence 87765
No 106
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=54.24 E-value=58 Score=29.73 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhcCC-----ceEeCCCCCCCHHHHHh-cCC----CccEEEEeeeCC------------------------
Q 026729 89 GEYATARAASAAGT-----IMTLSSWSTSSVEEVAS-TGP----GIRFFQLYVYKD------------------------ 134 (234)
Q Consensus 89 gE~a~AraA~~~gi-----~~~lSs~ss~sle~ia~-~~~----~~~wfQlY~~~d------------------------ 134 (234)
-+..+.+...+.|. ..+++|+...+|+.+.+ ..| ...-.+|+...+
T Consensus 155 ~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
T cd08600 155 IAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMFTKG 234 (318)
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhcCHH
Confidence 34566777777776 57888888888888875 455 445555543110
Q ss_pred --HH-------------------------HHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 135 --RN-------------------------VVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 135 --~~-------------------------~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
.+ .+.+++++|.++|....+-||+.+.
T Consensus 235 ~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~ 288 (318)
T cd08600 235 GLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDA 288 (318)
T ss_pred HHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCc
Confidence 01 1137899999999999999999874
No 107
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=53.37 E-value=70 Score=28.05 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=47.5
Q ss_pred ccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHH-hcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 82 ~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia-~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
.++-.|.-=-++.|.|.++|+.-+...........+. .+.+...|..++...| ..+.++..++.|+.-+..+..
T Consensus 25 d~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~---~~~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 25 EQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRT---IGDAVAHLKGQGMQILATHLS 99 (229)
T ss_pred eCCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCC---HHHHHHHHHhCCCEEEEEeCC
Confidence 3443443334799999999997663333333344333 2344568999887776 456777778889987777653
No 108
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=53.34 E-value=64 Score=29.73 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.8
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
-|.+..|-+.-+.+...++.+.++++|+++|+++--.
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 4788888654444567889999999999999987644
No 109
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=53.27 E-value=13 Score=34.42 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=42.4
Q ss_pred CCccEEEEeeeCCHHH----HHHHHHHHHHc---CCcEEEEeeCCCCCCchhhHhhc
Q 026729 122 PGIRFFQLYVYKDRNV----VAQLVRRAERA---GFKAIALTVDTPRLGRREADIKN 171 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~----~~~li~rA~~a---G~~AlvvTvD~pv~G~Re~d~r~ 171 (234)
.+..|++|-+..|+.. ..+.+++|+.. |+..++++.|.|+..+|-.++.-
T Consensus 163 ~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 163 GGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGA 219 (326)
T ss_pred cCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCC
Confidence 4567999999877653 46889999998 99999999999999999888843
No 110
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=53.20 E-value=1.3e+02 Score=28.17 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=61.9
Q ss_pred ccccccccCCCCCCcc----ceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceE-----eCCCCCCCHHH
Q 026729 46 ILFRPRILIDVSKIDM----NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-----LSSWSTSSVEE 116 (234)
Q Consensus 46 ~~l~prvL~dv~~~d~----sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~-----lSs~ss~sle~ 116 (234)
+.|-|..+.....+.. --.++|. ..-|++.+|+--..=..++.=..++....+.|+-.+ ++.+...+.||
T Consensus 101 ~~~P~~~~~~f~GP~fGi~g~R~~~gv-~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eE 179 (367)
T cd08205 101 LELPDSLLAAFPGPRFGIEGLRRLLGV-HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEE 179 (367)
T ss_pred cCCCHHHHhhCCCCCCCchhHHHHhCC-CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHH
Confidence 3444444444433322 2334553 367888877654322244555567777777887665 33344556655
Q ss_pred HHh--------cC---CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 117 VAS--------TG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 117 ia~--------~~---~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
=.+ +. +....+-.=...+.+.+.++.+.|+++|+++++|..-..
T Consensus 180 R~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 180 RVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred HHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 321 11 233333333345556666777777889999877765543
No 111
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=52.64 E-value=1.3e+02 Score=26.62 Aligned_cols=84 Identities=18% Similarity=0.103 Sum_probs=50.0
Q ss_pred ceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHHH
Q 026729 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNVV 138 (234)
Q Consensus 73 Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~~ 138 (234)
|..+.|+.-.+-.+.++=...++-..+.|+.-+ .+|.+ +.|.+|- .+..+ -+...++= ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 556667665555566666778888888887543 34433 3344432 22222 34566652 2366778
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 026729 139 AQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 139 ~~li~rA~~aG~~AlvvTv 157 (234)
.++.+.|+++|+++++++-
T Consensus 86 i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHhhcCceEEEEec
Confidence 8999999999999999976
No 112
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=52.35 E-value=30 Score=31.42 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=44.6
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCC----CC-HHHHH-------hcCC--CccEEEEeeeCCHHHHHHHHHHHHHcCCc
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWST----SS-VEEVA-------STGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss----~s-le~ia-------~~~~--~~~wfQlY~~~d~~~~~~li~rA~~aG~~ 151 (234)
+.+-=.++.+||.+.+.|.+|..... .. ++.++ +... -|..+.| |.....+.+++|-++||+
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHL----DHg~~~e~i~~ai~~Gft 102 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHL----DHGSSFEKCKEAIDAGFT 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEEC----CCCCCHHHHHHHHHcCCC
Confidence 33444678999999999999976442 12 44332 1222 2445554 777778888899999998
Q ss_pred EEEEe
Q 026729 152 AIALT 156 (234)
Q Consensus 152 AlvvT 156 (234)
-+++.
T Consensus 103 SVM~D 107 (286)
T PRK08610 103 SVMID 107 (286)
T ss_pred EEEEe
Confidence 87765
No 113
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=51.69 E-value=1.3e+02 Score=26.57 Aligned_cols=85 Identities=16% Similarity=0.042 Sum_probs=55.9
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|..+.|+.-.+-.+.++=....+-..+.|+--+ .+|.+ +.|.||- ++... -+.+.++-- .+-..
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 3566777766666677777788888888887443 33433 3455442 22222 245666532 35567
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026729 138 VAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTv 157 (234)
+.++.+.|+++|++++++.-
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc
Confidence 78999999999999999983
No 114
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=51.36 E-value=68 Score=29.43 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=24.3
Q ss_pred CCccEEEEeeeCCH----HHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 122 PGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 122 ~~~~wfQlY~~~d~----~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
+-|....+-..-|. +.+.++++.++++|+++|.|+-=+
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34566666442221 355678888889999887776433
No 115
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=51.19 E-value=58 Score=26.98 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=23.7
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEe-eCCCC
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIALT-VDTPR 161 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~AlvvT-vD~pv 161 (234)
..|...+.+.++.+.++|++.|-+. .|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~ 37 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHF 37 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3577788999999999999998886 44443
No 116
>PLN02417 dihydrodipicolinate synthase
Probab=51.05 E-value=1.4e+02 Score=26.59 Aligned_cols=85 Identities=9% Similarity=-0.089 Sum_probs=52.7
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCCC--ccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGPG--IRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~~--~~wfQlY~~~d~~~ 137 (234)
.|-.+.|+.-.+-.+.++=..+.+-..+.|+.-+ .+|.+ +.|.||- .+..++ +...++- ..+-..
T Consensus 6 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~ 84 (280)
T PLN02417 6 ITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTRE 84 (280)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHH
Confidence 3556677765555677776777777777776654 34433 3455543 222232 3344442 124456
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026729 138 VAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTv 157 (234)
+.++.+.|+++|+++++++-
T Consensus 85 ~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 85 AIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 78888999999999999864
No 117
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=50.50 E-value=1.1e+02 Score=25.16 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=59.0
Q ss_pred eEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC--C--CccEEEEeeeCCHHHHHHHHHHHHHcC
Q 026729 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG--P--GIRFFQLYVYKDRNVVAQLVRRAERAG 149 (234)
Q Consensus 74 i~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~--~--~~~wfQlY~~~d~~~~~~li~rA~~aG 149 (234)
|+++++|.. .|--|-.-++++-+..|.-.+....-+++ ||++.++ . +..-.=.+--.-.....++++..+++|
T Consensus 15 vlvak~GlD--gHd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 15 VLVAKLGLD--GHDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred EEEeccCcc--ccccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 678888844 57778889999999999999988766555 6665322 2 222222222234567789999999999
Q ss_pred CcEEEEeeCCC
Q 026729 150 FKAIALTVDTP 160 (234)
Q Consensus 150 ~~AlvvTvD~p 160 (234)
.+.|.|-+=..
T Consensus 92 ~~~i~v~~GGv 102 (143)
T COG2185 92 VEDILVVVGGV 102 (143)
T ss_pred CcceEEeecCc
Confidence 99998665544
No 118
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=50.45 E-value=50 Score=28.08 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCceEeCCCCCCCHHHHHh---cCCCccEEEEeeeCCH---HH----HHHHHHHHHHcCCcEEEEeeCCC
Q 026729 91 YATARAASAAGTIMTLSSWSTSSVEEVAS---TGPGIRFFQLYVYKDR---NV----VAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~sle~ia~---~~~~~~wfQlY~~~d~---~~----~~~li~rA~~aG~~AlvvTvD~p 160 (234)
..+|+++.+.|+..+.-. +++++.+ ...-|.-..+| +|. .+ ..+.++.|.++|+++ |.+|.+
T Consensus 26 ~~~a~a~~~~G~~~~~~~----~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~--I~~d~~ 97 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN----GVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADI--IALDAT 97 (221)
T ss_pred HHHHHHHHHCCCeEEEcC----CHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCE--EEEeCC
Confidence 579999999998655532 2555543 33333322333 120 01 235679999999994 444655
Q ss_pred C
Q 026729 161 R 161 (234)
Q Consensus 161 v 161 (234)
.
T Consensus 98 ~ 98 (221)
T PRK01130 98 L 98 (221)
T ss_pred C
Confidence 4
No 119
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=50.14 E-value=32 Score=32.21 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHhcCCceEeCCCCC----CCHHHHH-------hcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 87 PEGEYATARAASAAGTIMTLSSWST----SSVEEVA-------STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 87 p~gE~a~AraA~~~gi~~~lSs~ss----~sle~ia-------~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
.+-=.++.+||++.+.|.++...-. ..++.+. +..+ -|..+.| |.....+.+.+|-++||+.++
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEE
Confidence 3444678999999999999975432 2233322 1222 2444544 777778889999999999877
Q ss_pred Ee
Q 026729 155 LT 156 (234)
Q Consensus 155 vT 156 (234)
+.
T Consensus 104 iD 105 (347)
T PRK09196 104 MD 105 (347)
T ss_pred ec
Confidence 65
No 120
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.00 E-value=58 Score=30.14 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCceEeCCCCCCC-HHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 92 ATARAASAAGTIMTLSSWSTSS-VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 92 a~AraA~~~gi~~~lSs~ss~s-le~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
...+.+.+.++++++.+..... ++.+.+ .+-..|.|+ -+.+..++++++|+++||+.=
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~~~~lk~-~Gi~v~~~v-------~s~~~A~~a~~~GaD~vVaqG 131 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQARALEA-IGISTYLHV-------PSPGLLKQFLENGARKFIFEG 131 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHHHHHHHH-CCCEEEEEe-------CCHHHHHHHHHcCCCEEEEec
Confidence 4677788899999988766432 233322 233345554 234556889999999999853
No 121
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.89 E-value=89 Score=29.22 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCH---------------HHHHHHHHHHHHcCCc
Q 026729 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDR---------------NVVAQLVRRAERAGFK 151 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~---------------~~~~~li~rA~~aG~~ 151 (234)
+.|....+...+.+....+...+....++|..+.. +..++.++.+.++ +...+.++.|++.|+.
T Consensus 52 ~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~ 131 (378)
T PRK11858 52 EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLY 131 (378)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 34444444444455554454444444555543322 4456666665443 3344556666666655
Q ss_pred E
Q 026729 152 A 152 (234)
Q Consensus 152 A 152 (234)
.
T Consensus 132 v 132 (378)
T PRK11858 132 V 132 (378)
T ss_pred E
Confidence 3
No 122
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=49.80 E-value=1.3e+02 Score=26.41 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=54.5
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|..+.|+.-.+-.+.++=....+-..+.|+--+ .+|.+ +.|.||- .+..+ -+...++-- .+-..
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHH
Confidence 3566778776666677777788888888776544 44433 3455442 22222 344555522 24455
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026729 138 VAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTv 157 (234)
+.++.+.|+++|++++++.-
T Consensus 81 ~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 81 AIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 78899999999999999954
No 123
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=49.60 E-value=8.8 Score=35.75 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=33.7
Q ss_pred chHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceEecc
Q 026729 32 DQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAP 78 (234)
Q Consensus 32 de~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~iaP 78 (234)
-|.+.|--.. +..|.|.||-=. -...++.|.+||++++-||++|.
T Consensus 57 ~E~sHrlAv~-aas~gl~Pr~~~-~d~~~L~~k~~g~~f~NPiglAA 101 (398)
T KOG1436|consen 57 PEFSHRLAVL-AASWGLLPRDRV-ADDASLETKVLGRKFSNPIGLAA 101 (398)
T ss_pred HHHHHHHHHH-HHHhCCCchhcc-CCccchhhHHhhhhccCchhhhh
Confidence 3556665555 467899998733 34567889999999999999964
No 124
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=49.35 E-value=42 Score=29.50 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
.+.+++++++++|.+..+.|||.+.
T Consensus 216 ~~~~~v~~~~~~G~~v~vWTVn~~~ 240 (258)
T cd08573 216 ISSAYVRYWRARGIRVIAWTVNTPT 240 (258)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHH
Confidence 4678999999999999999999864
No 125
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=49.21 E-value=1.3e+02 Score=27.38 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred cCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHH-------HhcCCCccEEEEeeeCCHHHHH---
Q 026729 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVA--- 139 (234)
Q Consensus 70 ~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~i-------a~~~~~~~wfQlY~~~d~~~~~--- 139 (234)
+..||+-+||+. ...| .+|-|..++|-.=++++. ..+.|++ .+..+.+.=..+.++.......
T Consensus 10 i~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 10 IKYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp -SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HH
T ss_pred CCcCEEcCCCCC--CChH----HHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccchhhhh
Confidence 467999999986 4343 577888888888888854 3454444 3333444445555543332222
Q ss_pred -------HHHHHHHHcC--------------CcEEEEeeCCCC
Q 026729 140 -------QLVRRAERAG--------------FKAIALTVDTPR 161 (234)
Q Consensus 140 -------~li~rA~~aG--------------~~AlvvTvD~pv 161 (234)
..++-..+.| .+.++++...|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~ 125 (330)
T PF03060_consen 83 WPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP 125 (330)
T ss_dssp HHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-
T ss_pred hhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch
Confidence 2233333444 449999888773
No 126
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=49.19 E-value=54 Score=29.25 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=43.6
Q ss_pred CCceEeCCCCCCCHHHHHhcCC-----------CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 101 GTIMTLSSWSTSSVEEVASTGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 101 gi~~~lSs~ss~sle~ia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+--++--......+++|.+..| ...|+.+...-+++...+++.+.+++|++.|+|+
T Consensus 214 ~~k~~~~~~~~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~ 280 (287)
T PRK00489 214 ESKYLMMNAPKEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWELMDKLKALGARGILVL 280 (287)
T ss_pred ceEEEEEeCCHHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEe
Confidence 3444444556678898876432 1269999998999999999999999999999886
No 127
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=48.20 E-value=93 Score=28.68 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=29.7
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
-|.|..|.+.-+.+...++++.++++|+++|+++=-
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 478999987666667889999999999999988643
No 128
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=47.67 E-value=80 Score=28.29 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCC-----ceEeCCCCCCCHHHHHhcCCCccEEEEeee-------------------------------
Q 026729 89 GEYATARAASAAGT-----IMTLSSWSTSSVEEVASTGPGIRFFQLYVY------------------------------- 132 (234)
Q Consensus 89 gE~a~AraA~~~gi-----~~~lSs~ss~sle~ia~~~~~~~wfQlY~~------------------------------- 132 (234)
-+..+.+..++.|. ..+++|+....|..+.+..|...-..|+..
T Consensus 148 ~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 227 (296)
T cd08559 148 IEEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGI 227 (296)
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhh
Confidence 34556666667664 378888888888888765553222222110
Q ss_pred -CC-HHHH----------HHHHHHHHHcCCcEEEEeeCC
Q 026729 133 -KD-RNVV----------AQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 133 -~d-~~~~----------~~li~rA~~aG~~AlvvTvD~ 159 (234)
.+ .-.+ .+++++|+++|.+..+-|||.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 228 GPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred CCCHHhccccccccccCchHHHHHHHHcCCEEEEEEecC
Confidence 01 1112 688999999999999999997
No 129
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=47.43 E-value=33 Score=31.80 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHhcCCceEeCCCCC----CC---HHHHH-------hcC--CCccEEEEeeeCCHHHHHHHHHHHHHcCC
Q 026729 87 PEGEYATARAASAAGTIMTLSSWST----SS---VEEVA-------STG--PGIRFFQLYVYKDRNVVAQLVRRAERAGF 150 (234)
Q Consensus 87 p~gE~a~AraA~~~gi~~~lSs~ss----~s---le~ia-------~~~--~~~~wfQlY~~~d~~~~~~li~rA~~aG~ 150 (234)
.+-=.++.+||++.+.|.++...-+ .. ++.++ +.. .-|..++| |.....+.+.+|-++||
T Consensus 34 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHL----DHg~~~e~i~~ai~~Gf 109 (321)
T PRK07084 34 MEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHL----DHGDSFELCKDCIDSGF 109 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcCC
Confidence 3444689999999999999975421 12 33332 111 23455665 77777788999999999
Q ss_pred cEEEEe
Q 026729 151 KAIALT 156 (234)
Q Consensus 151 ~AlvvT 156 (234)
+.+++.
T Consensus 110 tSVMiD 115 (321)
T PRK07084 110 SSVMID 115 (321)
T ss_pred CEEEee
Confidence 887765
No 130
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.95 E-value=79 Score=27.83 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEE--eeeCCHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQL--YVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 92 a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQl--Y~~~d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+.+.+++.++|++++. .-.++|++.+... +...+-+ ....|.+...+++++. |-..+++.+|..
T Consensus 65 ~i~~i~~~~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~---~~~~i~vsiD~k 132 (258)
T PRK01033 65 LIENLASECFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF---GSQSVVVSIDVK 132 (258)
T ss_pred HHHHHHHhCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh---CCCcEEEEEEEe
Confidence 45666666788888876 5578888764321 2222211 1234555555554443 545689999975
No 131
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=46.93 E-value=87 Score=28.51 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=38.7
Q ss_pred cccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcC
Q 026729 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG 149 (234)
Q Consensus 77 aP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG 149 (234)
||-.+|++ ..+|=.-+.+++.++|.|.+.=-+...-+|.+++..+ .+|+ -.-.-.+.+|++.+-+.+
T Consensus 86 SPYsFQGl-ge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y~D---ilqv--GARNMQNF~LLke~G~~~ 152 (286)
T COG2876 86 SPYSFQGL-GEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEYAD---ILQV--GARNMQNFALLKEVGRQN 152 (286)
T ss_pred Cccccccc-CHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhhhh---HHHh--cccchhhhHHHHHhcccC
Confidence 46666666 3356666888888888888776666556665554432 3343 111112456666655544
No 132
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=46.37 E-value=42 Score=30.19 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+.+++++++++|.+..+-|||.+
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~ 272 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDE 272 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCH
Confidence 467999999999999999999976
No 133
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=45.69 E-value=88 Score=28.00 Aligned_cols=79 Identities=16% Similarity=0.313 Sum_probs=48.1
Q ss_pred ccEEEEee---eCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccH
Q 026729 124 IRFFQLYV---YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (234)
Q Consensus 124 ~~wfQlY~---~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (234)
...|=.|+ ..|.+.+.++++...++|++.|=|.+ | |+.|- ..+.-+
T Consensus 9 ~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGi--P------------fSDP~-----------------ADGpvI 57 (259)
T PF00290_consen 9 RKALIPYITAGYPDLETTLEILKALEEAGADIIEIGI--P------------FSDPV-----------------ADGPVI 57 (259)
T ss_dssp BTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----------------SSSCT-----------------TSSHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--C------------CCCCC-----------------CCCHHH
Confidence 35677777 36788999999999999998865543 1 22220 011222
Q ss_pred HHHhhhcCCCCCChH----HHHHHH-HhCCCccccccc
Q 026729 201 AAYVAGQIDRSLSWK----NILCLY-QDFSFECDVMLY 233 (234)
Q Consensus 201 ~~~~~~~~~~~~tW~----di~wlr-~~w~l~~~~~~~ 233 (234)
.......+...++.+ -++.+| +..+.|+++|.|
T Consensus 58 q~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y 95 (259)
T PF00290_consen 58 QKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTY 95 (259)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEee
Confidence 222222233445544 478889 889999999998
No 134
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=45.33 E-value=41 Score=30.02 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=48.7
Q ss_pred CCccEEEEeeeCCHHH----HHHHHHHHH---HcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcc
Q 026729 122 PGIRFFQLYVYKDRNV----VAQLVRRAE---RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~----~~~li~rA~---~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~ 194 (234)
.+..|++|-+..|... ..++++-|| +-||..+-.+-|-|+.-+|-.|.=-...+|..- ..
T Consensus 89 ~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgs-----------PI-- 155 (247)
T PF05690_consen 89 FGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGS-----------PI-- 155 (247)
T ss_dssp TS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSS-----------ST--
T ss_pred cCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEeccc-----------cc--
Confidence 3557998877666542 345555554 669999999999999988887764433343210 00
Q ss_pred cCcccHHHHhhhcCCCCCChHHHHHHHHhCCCcccc
Q 026729 195 ANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~ 230 (234)
+.+. .-.+..-|+-|+++.+.||+|
T Consensus 156 GSg~-----------Gi~n~~~l~~i~~~~~vPvIv 180 (247)
T PF05690_consen 156 GSGR-----------GIQNPYNLRIIIERADVPVIV 180 (247)
T ss_dssp TT--------------SSTHHHHHHHHHHGSSSBEE
T ss_pred ccCc-----------CCCCHHHHHHHHHhcCCcEEE
Confidence 0010 113456799999999999987
No 135
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=45.26 E-value=82 Score=27.27 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCc--------eEeCCCCCCCHHHHHhcCCCccEEEEeee-----------------------CCHHHH
Q 026729 90 EYATARAASAAGTI--------MTLSSWSTSSVEEVASTGPGIRFFQLYVY-----------------------KDRNVV 138 (234)
Q Consensus 90 E~a~AraA~~~gi~--------~~lSs~ss~sle~ia~~~~~~~wfQlY~~-----------------------~d~~~~ 138 (234)
+..+++.-.+.|.. .+++|+...++..+.+..|.....++... ......
T Consensus 128 ~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (256)
T cd08601 128 EEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPSIADAD 207 (256)
T ss_pred HHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCchhhcC
Confidence 34455555666543 67777777777777765543222222211 112233
Q ss_pred HHHHHHHHHcCCcEEEEeeCCC
Q 026729 139 AQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 139 ~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+++++++++|.+..+.|||.+
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCH
Confidence 5778888888888888888763
No 136
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.04 E-value=1.2e+02 Score=24.32 Aligned_cols=72 Identities=14% Similarity=-0.035 Sum_probs=46.3
Q ss_pred CchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC---CccEEEEeeeC---CHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 86 HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~---~~~wfQlY~~~---d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
..+.-..+++.+.+.|+.-+.-.. .-++.+.+..+ -+...++-... .-+.+.+++++|+++|++++.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 445556788888888886665443 33454544332 23455654322 03567888999999999999998654
No 137
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.78 E-value=1.2e+02 Score=26.97 Aligned_cols=85 Identities=14% Similarity=-0.002 Sum_probs=54.1
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCceE--eCCCC---CCCHHHH-------HhcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSWS---TSSVEEV-------ASTGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~--lSs~s---s~sle~i-------a~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|.++.|+--.+-.+.++=....+-..+.|+--+ .+|.+ +.|.||- .+... -+.+.++-- .+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 3566778766665677776777777777776544 34443 3344442 22222 345666522 24456
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 026729 138 VAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTv 157 (234)
+.++.+.|+++|+++++++-
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 78899999999999999976
No 138
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=44.11 E-value=67 Score=29.17 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHhC-CCcccc
Q 026729 210 RSLSWKNILCLYQDF-SFECDV 230 (234)
Q Consensus 210 ~~~tW~di~wlr~~w-~l~~~~ 230 (234)
+.++|+-|+.|++.. +.|+|.
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVl 207 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVL 207 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEE
Confidence 569999999999999 599875
No 139
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=43.89 E-value=57 Score=29.42 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=34.8
Q ss_pred cccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC
Q 026729 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121 (234)
Q Consensus 77 aP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~ 121 (234)
||-+++++.-.+|=.-++++..+.|+|.+.=-.....+|.+++..
T Consensus 57 Sp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~~ 101 (264)
T PRK05198 57 SIHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEVV 101 (264)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhhC
Confidence 577788886578888899999999999887666666666666543
No 140
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=43.67 E-value=98 Score=27.96 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=56.8
Q ss_pred CcccCcceEeccccccccc----CchhHH--HHHHHHHhcCCceEeCCCCC--CCHHHHHhcCCCccEEEEeee-CCHHH
Q 026729 67 GFKISMPIMIAPTAMQKMA----HPEGEY--ATARAASAAGTIMTLSSWST--SSVEEVASTGPGIRFFQLYVY-KDRNV 137 (234)
Q Consensus 67 G~~~~~Pi~iaP~g~~~l~----~p~gE~--a~AraA~~~gi~~~lSs~ss--~sle~ia~~~~~~~wfQlY~~-~d~~~ 137 (234)
.+++-||+++=+.....-. |.+.+. -.+|.|++.|.=++=-.+.. .+++++.+.++.|.-.===.. .+...
T Consensus 139 a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~~~~~~ 218 (265)
T COG1830 139 AHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKTETERE 218 (265)
T ss_pred HHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCCCChHH
Confidence 3567788887555544433 555554 37889999998887766654 788888876552211100001 14456
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 026729 138 VAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 138 ~~~li~rA~~aG~~Alvv 155 (234)
..+++..|-++|+..+++
T Consensus 219 ~l~~~~~ai~aGa~G~~~ 236 (265)
T COG1830 219 FLEMVTAAIEAGAMGVAV 236 (265)
T ss_pred HHHHHHHHHHccCcchhh
Confidence 778888888889887655
No 141
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=43.37 E-value=44 Score=29.84 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=43.5
Q ss_pred HHHHHHhcCCceEeCCCCCCCHHHHHhc--CCCccEEEEeeeCCHHHHHHHHHHH-HHcCCcEEEEeeCCCC
Q 026729 93 TARAASAAGTIMTLSSWSTSSVEEVAST--GPGIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPR 161 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~sle~ia~~--~~~~~wfQlY~~~d~~~~~~li~rA-~~aG~~AlvvTvD~pv 161 (234)
+.|.|.+.-||++++ .+..|+||+... .+.- .+.+...-=..-+||.++ ++-|.+.|||.+|+-.
T Consensus 66 v~r~A~~vfiPltVG-GGI~s~eD~~~ll~aGAD---KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 66 VERVAEQVFIPLTVG-GGIRSVEDARKLLRAGAD---KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred HHHHHhhceeeeEec-CCcCCHHHHHHHHHcCCC---eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeee
Confidence 788999999999998 456899999752 1111 111111111223577776 5669999999999853
No 142
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=43.36 E-value=29 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 135 RNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 135 ~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
.+...+.+++|++.++++|+|.+|+|-.
T Consensus 15 ~~~l~~~l~~A~~~~~~~i~l~inSPGG 42 (172)
T cd07015 15 YDQFDRYITIAEQDNAEAIIIELDTPGG 42 (172)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCC
Confidence 3466788899998999999999999963
No 143
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.21 E-value=1.1e+02 Score=21.14 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=25.9
Q ss_pred CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
++...+=+-..+....+.++++.|++.|++.+++|
T Consensus 47 ~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 33344444445555668899999999999999999
No 144
>PRK12855 hypothetical protein; Provisional
Probab=43.18 E-value=29 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPR 161 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv 161 (234)
+..++|.++|++.|+.||| +.+|+..
T Consensus 60 ~A~~rm~~~A~~lGAnAVVgvr~d~~~ 86 (103)
T PRK12855 60 IAMEEMKTLARQKNANAIVGIDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 3567899999999999975 6666554
No 145
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=43.17 E-value=36 Score=28.87 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=49.2
Q ss_pred ecCcccCcceEecccccccccCchhHHH----HHHHHHhcCCceEeC-CCCC----CCHHHHHhcCC----CccEEEEee
Q 026729 65 VLGFKISMPIMIAPTAMQKMAHPEGEYA----TARAASAAGTIMTLS-SWST----SSVEEVASTGP----GIRFFQLYV 131 (234)
Q Consensus 65 l~G~~~~~Pi~iaP~g~~~l~~p~gE~a----~AraA~~~gi~~~lS-s~ss----~sle~ia~~~~----~~~wfQlY~ 131 (234)
.....+..|+.+-.+.. ..++-... +-+.+++ |+..++. +..+ .-+|.+++..+ .|.|-
T Consensus 52 ~~A~~lgipl~~i~~~~---~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~---- 123 (194)
T cd01994 52 LQAEAMGIPLIRIEISG---EEEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWG---- 123 (194)
T ss_pred HHHHHcCCcEEEEeCCC---CchHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCEEEecccC----
Confidence 34556667776666532 12222222 3333334 6765543 2222 23566765543 34452
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G 163 (234)
+|+ +++++...+.|++++++.|++..++
T Consensus 124 -~~~---~~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 124 -RDQ---EELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred -CCH---HHHHHHHHHcCCeEEEEEeccCCCC
Confidence 343 4688888899999999999987544
No 146
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=43.17 E-value=61 Score=29.17 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=33.9
Q ss_pred cccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC
Q 026729 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121 (234)
Q Consensus 77 aP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~ 121 (234)
||-+++++.-.+|=.-+.++.++.|+|.+.=-....-+|.+++..
T Consensus 49 sp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~v 93 (258)
T TIGR01362 49 SIHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEVV 93 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhhC
Confidence 577788886567888899999999999887655555666665543
No 147
>PRK02227 hypothetical protein; Provisional
Probab=43.11 E-value=1.7e+02 Score=25.99 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=42.6
Q ss_pred CchhHHH-HHHHHHhcCCceE-eCCCCCCCHH----HH---H----hcCCCccEEEEeeeCCHH-----HHHHHHHHHHH
Q 026729 86 HPEGEYA-TARAASAAGTIMT-LSSWSTSSVE----EV---A----STGPGIRFFQLYVYKDRN-----VVAQLVRRAER 147 (234)
Q Consensus 86 ~p~gE~a-~AraA~~~gi~~~-lSs~ss~sle----~i---a----~~~~~~~wfQlY~~~d~~-----~~~~li~rA~~ 147 (234)
+| |+.+ .+.+++..|+-|+ ++-+.....+ .+ . ...++..+.=..+ .|.. --.++++.|.+
T Consensus 65 ~p-~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~y-aD~~r~~~~~~~~l~~~a~~ 142 (238)
T PRK02227 65 KP-GTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGY-ADAHRVGSVSPLSLPAIAAD 142 (238)
T ss_pred Cc-hHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEe-cccccccCCChHHHHHHHHH
Confidence 45 5544 5677778899887 5555433332 22 1 1223445554432 3433 33588999999
Q ss_pred cCCcEEEEeeCCC
Q 026729 148 AGFKAIALTVDTP 160 (234)
Q Consensus 148 aG~~AlvvTvD~p 160 (234)
+||..++| |+.
T Consensus 143 aGf~g~Ml--DTa 153 (238)
T PRK02227 143 AGFDGAML--DTA 153 (238)
T ss_pred cCCCEEEE--ecc
Confidence 99999887 665
No 148
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=42.94 E-value=26 Score=31.54 Aligned_cols=29 Identities=41% Similarity=0.580 Sum_probs=23.2
Q ss_pred HHHHH-HHcCCcEEEEeeCCCCCCchhhHh
Q 026729 141 LVRRA-ERAGFKAIALTVDTPRLGRREADI 169 (234)
Q Consensus 141 li~rA-~~aG~~AlvvTvD~pv~G~Re~d~ 169 (234)
|..-| +++|=.++.||||+|+..+|+.+.
T Consensus 33 La~la~~~lG~~v~AvTv~sP~~p~~e~e~ 62 (269)
T COG1606 33 LAKLAKEALGDNVVAVTVDSPYIPRREIEE 62 (269)
T ss_pred HHHHHHHHhccceEEEEEecCCCChhhhhH
Confidence 33444 678999999999999999987653
No 149
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=42.67 E-value=32 Score=28.80 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
+...+.+++|++.++++|+|.+|+|..
T Consensus 16 ~~l~~~l~~a~~~~~~~ivl~inspGG 42 (178)
T cd07021 16 AFVERALKEAKEEGADAVVLDIDTPGG 42 (178)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEECcCC
Confidence 456778889999999999999999963
No 150
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=42.09 E-value=2.1e+02 Score=24.05 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=50.6
Q ss_pred ceEecccccccccCchhHHHHHHHHHhcCCce-----EeCCCCC-CCHH--HHHhcC--CCccEEEEeeeCCHHHHHHHH
Q 026729 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIM-----TLSSWST-SSVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (234)
Q Consensus 73 Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~-----~lSs~ss-~sle--~ia~~~--~~~~wfQlY~~~d~~~~~~li 142 (234)
|+++|||-.. .+++.=+.+.+.|.-. +.+..-. ..-+ ...... +.+...||. -.+.+...+..
T Consensus 1 ~~~~aPm~~~------~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV------TDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC------cCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 5788887643 4556666666666332 3322111 1111 111122 256789996 34667778888
Q ss_pred HHHHHcCCcEEEEeeCCCC
Q 026729 143 RRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 143 ~rA~~aG~~AlvvTvD~pv 161 (234)
++++++||++|=|.+-+|.
T Consensus 74 ~~~~~aG~d~ieln~g~p~ 92 (231)
T cd02801 74 KIVEELGADGIDLNMGCPS 92 (231)
T ss_pred HHHHhcCCCEEEEeCCCCH
Confidence 9999999999999998875
No 151
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.99 E-value=78 Score=27.57 Aligned_cols=74 Identities=12% Similarity=0.226 Sum_probs=43.6
Q ss_pred EEEeee---CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHH
Q 026729 127 FQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (234)
Q Consensus 127 fQlY~~---~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (234)
|=.|+. .|.+.+.++++..+++ +++|=|.+ | |+-|.. .+..+...
T Consensus 6 ~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgi--p------------~sdp~a-----------------dG~~i~~~ 53 (244)
T PRK13125 6 LVVYLTAGYPNVESFKEFIIGLVEL-VDILELGI--P------------PKYPKY-----------------DGPVIRKS 53 (244)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECC--C------------CCCCCC-----------------CCHHHHHH
Confidence 344553 4667778888888877 88876665 3 222210 11111111
Q ss_pred hhhcCCCCCChHHHHHHHHhCCCccccccc
Q 026729 204 VAGQIDRSLSWKNILCLYQDFSFECDVMLY 233 (234)
Q Consensus 204 ~~~~~~~~~tW~di~wlr~~w~l~~~~~~~ 233 (234)
........+ ++.++.+|+.++.|+.+|.|
T Consensus 54 ~~~a~~~g~-~~~v~~vr~~~~~Pl~lM~y 82 (244)
T PRK13125 54 HRKVKGLDI-WPLLEEVRKDVSVPIILMTY 82 (244)
T ss_pred HHHHHHcCc-HHHHHHHhccCCCCEEEEEe
Confidence 111122222 78999999999999988876
No 152
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=41.92 E-value=52 Score=29.68 Aligned_cols=22 Identities=5% Similarity=0.070 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHhCCCcccc
Q 026729 209 DRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 209 ~~~~tW~di~wlr~~w~l~~~~ 230 (234)
.|.++++-|+.|++..+.|++.
T Consensus 184 ~~~l~~e~L~~i~~~~~iPlv~ 205 (282)
T TIGR01859 184 EPGLDFERLKEIKELTNIPLVL 205 (282)
T ss_pred CCccCHHHHHHHHHHhCCCEEE
Confidence 3789999999999999999875
No 153
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=41.90 E-value=1.9e+02 Score=25.97 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=61.8
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCCce--EeCCCC---CCCHHHHH-------hcCC--CccEEEEeeeCCHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIM--TLSSWS---TSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~--~lSs~s---s~sle~ia-------~~~~--~~~wfQlY~~~d~~~ 137 (234)
.|.++.|+.-.+-.+.++=..+.+-..+.|+-- +.+|.+ +.|.||-. +... -+.+.++-- .+-..
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 467788887666667777777888777888653 444444 44555532 2222 244555532 34456
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccC
Q 026729 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f 173 (234)
+.++.+.|+++|++++++.-=. ...-.+..+.+-|
T Consensus 84 ai~~a~~A~~~Gad~v~v~pP~-y~~~~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIVPY-YNKPNQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcCcc-CCCCCHHHHHHHH
Confidence 7889999999999999988622 2233445554444
No 154
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=41.87 E-value=73 Score=27.10 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHHHHHHhcC--CceEeCCCCCCCHHHHHhcCCCccEEEEe--------------------eeCCHH--------HHHH
Q 026729 91 YATARAASAAG--TIMTLSSWSTSSVEEVASTGPGIRFFQLY--------------------VYKDRN--------VVAQ 140 (234)
Q Consensus 91 ~a~AraA~~~g--i~~~lSs~ss~sle~ia~~~~~~~wfQlY--------------------~~~d~~--------~~~~ 140 (234)
..+++...+.+ -..++||+....++.+.+..|...--.++ +.-+.. .+.+
T Consensus 106 ~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (226)
T cd08568 106 EPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVE 185 (226)
T ss_pred HHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHH
Confidence 34555555555 35678888777777777655532111111 001111 1368
Q ss_pred HHHHHHHcCCcEEEEeeCCC
Q 026729 141 LVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 141 li~rA~~aG~~AlvvTvD~p 160 (234)
++++++++|.+..+.|||.+
T Consensus 186 ~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 186 LLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHCCCEEEEEcCCCH
Confidence 89999999999999999976
No 155
>PRK02877 hypothetical protein; Provisional
Probab=41.86 E-value=31 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPRLG 163 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv~G 163 (234)
+...+|.++|++.|+.||| +.+|....|
T Consensus 60 ~A~~rm~~~A~~lGAnAVIgvr~d~~~i~ 88 (106)
T PRK02877 60 IAFEELGEQARALGADAVVGIDIDYETVG 88 (106)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEehhcc
Confidence 4567899999999999976 667766543
No 156
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.82 E-value=2.1e+02 Score=25.31 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=46.8
Q ss_pred CcceEecccccccccCchhHHHHHHHHHhcCCceE-e--CCCCC--------CC-------HHHHHhcCCCccEEEEeee
Q 026729 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-L--SSWST--------SS-------VEEVASTGPGIRFFQLYVY 132 (234)
Q Consensus 71 ~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~-l--Ss~ss--------~s-------le~ia~~~~~~~wfQlY~~ 132 (234)
..|++++=.+. .++.=...|+.+.++|.-++ + |+-.+ .+ ++.|.+...-|.+.++-
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-- 162 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-- 162 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC--
Confidence 46777654432 23444567788888876555 2 21100 11 22333333456788873
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE
Q 026729 133 KDRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 133 ~d~~~~~~li~rA~~aG~~Alvv 155 (234)
.+.+...++++.++++|+++|.+
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEE
Confidence 34445778899999999999866
No 157
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=41.27 E-value=79 Score=29.37 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhcCCceEeC---CCCCCCHHHHHhcCC--CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 88 EGEYATARAASAAGTIMTLS---SWSTSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lS---s~ss~sle~ia~~~~--~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
+|..|+|+||.++|+-++.+ |-||.=+|.+++..+ +..|+| ..|.....+..-=|--+|++++..|-|
T Consensus 8 ~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~taTSg 80 (352)
T PRK07119 8 KGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ---AESEVAAINMVYGAAATGKRVMTSSSS 80 (352)
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe---eCcHHHHHHHHHHHHhhCCCEEeecCc
Confidence 79999999999999997765 222222344443222 345788 467777778887888899999999943
No 158
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=41.10 E-value=2.5e+02 Score=26.38 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=63.8
Q ss_pred hccccccccccCCCCCCccc----eeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceE-----eCCCCCCC
Q 026729 43 FSRILFRPRILIDVSKIDMN----TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-----LSSWSTSS 113 (234)
Q Consensus 43 f~r~~l~prvL~dv~~~d~s----ttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~-----lSs~ss~s 113 (234)
+.++.|-|..++....+... -.++|.. .-|++.+-+=-.+| .|+.=..++..+...|+-++ ++++...+
T Consensus 94 L~D~~~p~~~~~~f~GP~~Gi~g~R~~lgv~-~rPl~~tiiKP~GL-~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p 171 (364)
T cd08210 94 LVDFELPPSLLRRFPGPRFGIAGLRALLGIP-ERPLLCSALKPQGL-SAAELAELAYAFALGGIDIIKDDHGLADQPFAP 171 (364)
T ss_pred EEEecCCHHHHhcCCCCCCChHHHHHHhCCC-CCceEEEEeccccC-CHHHHHHHHHHHHhcCCCeeecCccccCccCCC
Confidence 45566667666665555433 3344532 55554432111133 33433457777778898887 66777778
Q ss_pred HHHHHh--------cC---CCc--cEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 114 VEEVAS--------TG---PGI--RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 114 le~ia~--------~~---~~~--~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
+||=.+ +. ++. ..+.+ ..+.....+..++|+++|+.+++|..-+.
T Consensus 172 ~~eRv~~v~~av~~a~~eTG~~~~y~~Ni--ta~~~em~~ra~~a~~~Ga~~vMv~~~~~ 229 (364)
T cd08210 172 FEERVKACQEAVAEANAETGGRTLYAPNV--TGPPTQLLERARFAKEAGAGGVLIAPGLT 229 (364)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEec--CCCHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 776421 11 122 22333 35555666777777889998877655443
No 159
>PLN02775 Probable dihydrodipicolinate reductase
Probab=40.79 E-value=1.3e+02 Score=27.51 Aligned_cols=89 Identities=9% Similarity=0.171 Sum_probs=61.3
Q ss_pred hcCCCCc-hHHHHHHHHhhccccccccccCCCCCCccceeecCcccCcceE--------e------ccc-ccccccCchh
Q 026729 26 YASGAED-QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIM--------I------APT-AMQKMAHPEG 89 (234)
Q Consensus 26 i~gGa~d-e~t~~~N~~af~r~~l~prvL~dv~~~d~sttl~G~~~~~Pi~--------i------aP~-g~~~l~~p~g 89 (234)
+.|..|. +.+..+-..+ +.+.|.|-+.+.-..-|..+++.|. ..|+. + -|- -.--.-||++
T Consensus 16 V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a 92 (286)
T PLN02775 16 VNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDA 92 (286)
T ss_pred EECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEEECCChHH
Confidence 3444444 6677777777 9999999877655445666678886 44443 1 133 2335668999
Q ss_pred HHHHHHHHHhcCCceEeCCCCCCCHHHHH
Q 026729 90 EYATARAASAAGTIMTLSSWSTSSVEEVA 118 (234)
Q Consensus 90 E~a~AraA~~~gi~~~lSs~ss~sle~ia 118 (234)
=....+.|.+.|++.+++|-+ .+-|++.
T Consensus 93 ~~~~~~~~~~~g~~~VvGTTG-~~~e~l~ 120 (286)
T PLN02775 93 VNDNAELYCKNGLPFVMGTTG-GDRDRLL 120 (286)
T ss_pred HHHHHHHHHHCCCCEEEECCC-CCHHHHH
Confidence 999999999999999999877 3444543
No 160
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.77 E-value=2.1e+02 Score=25.83 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=57.6
Q ss_pred CcceEecccccccccCchhHHHHHHHHHhcCCc--eEeCCCC---CCCHHHHH-------hcCC--CccEEEEeeeCCHH
Q 026729 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI--MTLSSWS---TSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (234)
Q Consensus 71 ~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~--~~lSs~s---s~sle~ia-------~~~~--~~~wfQlY~~~d~~ 136 (234)
..|.++.|+.-.+-.+.++=..+++-.-+.|+- ++++|.+ +.|.||-. +... -+...+.- ..+-+
T Consensus 8 vi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~ 86 (299)
T COG0329 8 VIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTA 86 (299)
T ss_pred ceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHH
Confidence 357778888765556777777888888888865 4444443 45666532 2222 23455553 23345
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
.+.++.+.|++.|+++|++..=.
T Consensus 87 eai~lak~a~~~Gad~il~v~Py 109 (299)
T COG0329 87 EAIELAKHAEKLGADGILVVPPY 109 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCC
Confidence 67899999999999999987533
No 161
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=40.70 E-value=33 Score=26.13 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTP 160 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~p 160 (234)
+..++|.++|++.|+.||+ +.+|..
T Consensus 60 ~A~~~L~~~A~~~GAnAVIgv~~~~~ 85 (105)
T PF01906_consen 60 EALERLKEEAKELGANAVIGVRFDYS 85 (105)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEEEEEEee
Confidence 4568999999999999976 455543
No 162
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=40.24 E-value=32 Score=29.93 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=59.1
Q ss_pred hhhcCCCCchHHHHHHHHhhccccccccccCCCC---C-------Cccc-eeecCcccCcceEecccccccccCchhHHH
Q 026729 24 DYYASGAEDQWTLQENRNAFSRILFRPRILIDVS---K-------IDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEYA 92 (234)
Q Consensus 24 ~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv~---~-------~d~s-ttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a 92 (234)
..++||-+.-.++..-...++ + .+|..+- . +..+ +..-..-+..|+...++.+. ..+-+..
T Consensus 5 ~l~SGGKDS~lAl~~a~~~~~-v----~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~---~~~~~~~ 76 (218)
T PF01902_consen 5 ALWSGGKDSCLALYRALRQHE-V----VCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD---EEDYVED 76 (218)
T ss_dssp EE--SSHHHHHHHHHHHHT-E-E----EEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE------CCCHHHH
T ss_pred EEEcCcHHHHHHHHHHHHhCC-c----cEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc---cchhhHH
Confidence 346788888888765554422 2 2222110 0 0111 11122445568888777533 2233456
Q ss_pred HHHHHHhcCCceEeCCCCCC------CHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 93 TARAASAAGTIMTLSSWSTS------SVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~------sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
+.++.++.++-.+++- .-. =+|.+++..+ .|.|- .|+ ++++++.-+.|++++++.||+..+
T Consensus 77 l~~~l~~~~v~~vv~G-dI~~~~~r~~~e~vc~~lGl~~~~PLW~-----~d~---~~ll~e~i~~Gf~aiIv~V~~~~L 147 (218)
T PF01902_consen 77 LKEALKELKVEAVVFG-DIDSEYQRNWVERVCERLGLEAVFPLWG-----RDR---EELLREFIESGFEAIIVKVDADGL 147 (218)
T ss_dssp HHHHHCTC--SEEE---TTS-HHHHHHHHHHHHHCT-EEE-TTTT-------H---HHHHHHHHHTT-EEEEEEEESTT-
T ss_pred HHHHHHHcCCCEEEEC-cCCcHHHHHHHHHHHHHcCCEEEecccC-----CCH---HHHHHHHHHCCCeEEEEEEeccCC
Confidence 7788888886666642 221 2355554433 34453 243 467777778999999999999764
No 163
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=39.89 E-value=44 Score=32.27 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhh
Q 026729 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 170 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r 170 (234)
+...+-+++|++.|+.++|+..|+| |-+-..+|
T Consensus 43 ~~l~r~l~~A~~~~a~~vvl~ldTP--GGl~~sm~ 75 (436)
T COG1030 43 DYLQRALQSAEEENAAAVVLELDTP--GGLLDSMR 75 (436)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCC--CchHHHHH
Confidence 3556778889999999999999999 55655555
No 164
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.27 E-value=1.2e+02 Score=27.68 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 026729 137 VVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvT 156 (234)
...+++++++++|+++|.|+
T Consensus 150 ~~~~~a~~le~~G~d~i~vh 169 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIH 169 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEe
Confidence 35566677777777777665
No 165
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=38.91 E-value=1.9e+02 Score=25.28 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=64.4
Q ss_pred hhhcCCCCchHHHHHHHHhhccccccccccCCC-----CCCccc-eeecCcccCcceEecccccccccCchhHH-HHHHH
Q 026729 24 DYYASGAEDQWTLQENRNAFSRILFRPRILIDV-----SKIDMN-TTVLGFKISMPIMIAPTAMQKMAHPEGEY-ATARA 96 (234)
Q Consensus 24 ~Yi~gGa~de~t~~~N~~af~r~~l~prvL~dv-----~~~d~s-ttl~G~~~~~Pi~iaP~g~~~l~~p~gE~-a~Ara 96 (234)
.-++||-+.-.++..=.+.|+-..|..-+-.+- ..++.+ +..-...+..|+..-++... .+.|. .+.+.
T Consensus 5 vl~SGGKDS~lAl~~~~~~~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----~e~~~~~l~~~ 80 (222)
T TIGR00289 5 VLYSGGKDSILALYKALEEHEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----EEKEVEDLAGQ 80 (222)
T ss_pred EEecCcHHHHHHHHHHHHcCeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc----hhHHHHHHHHH
Confidence 346788888877765444343222222111110 001111 11223344556554443321 23343 46677
Q ss_pred HHhcCCceEeCCC-CC----CCHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 026729 97 ASAAGTIMTLSSW-ST----SSVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (234)
Q Consensus 97 A~~~gi~~~lSs~-ss----~sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G 163 (234)
..+.|+-.+++-. .+ .=+|.+++..+ .|.| .+|+.. ++ +-.+.|++++++.||+..++
T Consensus 81 l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW-----~~d~~~---l~-e~i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 81 LGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIAPLW-----HADPEK---LM-YEVAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEecccc-----CCCHHH---HH-HHHHcCCeEEEEEEccCCCC
Confidence 7777876665422 11 23566665543 3445 356643 33 33489999999999986544
No 166
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=38.58 E-value=46 Score=28.55 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+.++++++.++|.+..+.|||.+
T Consensus 193 ~~~~~v~~~~~~Gl~v~vwTVn~~ 216 (237)
T cd08583 193 VNDKLIEKLNKAGIYVYVYTINDL 216 (237)
T ss_pred cCHHHHHHHHHCCCEEEEEeCCCH
Confidence 456888888888888888888875
No 167
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=38.52 E-value=2.3e+02 Score=25.11 Aligned_cols=85 Identities=18% Similarity=0.122 Sum_probs=51.6
Q ss_pred cceEecccccccccCchhHHHHHHHHHhc-CCce--EeCCCC---CCCHHHHH-------hcCCC--ccEEEEeeeCCHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAA-GTIM--TLSSWS---TSSVEEVA-------STGPG--IRFFQLYVYKDRN 136 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~-gi~~--~lSs~s---s~sle~ia-------~~~~~--~~wfQlY~~~d~~ 136 (234)
.|..+.|+.-.+-.+.++=..+++-..+. |+.- +.+|.+ +.|.||-. +...+ +...++- ..+-.
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 35566777655556666666777777666 7544 334433 34554422 22222 3455552 23455
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 026729 137 VVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTv 157 (234)
.+.++.+.|+++|++++++.-
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 84 ESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 678888999999999999874
No 168
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=38.40 E-value=1e+02 Score=27.77 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=20.1
Q ss_pred eCCHHHHHHHHHHHH---HcCCcEEEEee
Q 026729 132 YKDRNVVAQLVRRAE---RAGFKAIALTV 157 (234)
Q Consensus 132 ~~d~~~~~~li~rA~---~aG~~AlvvTv 157 (234)
-++.+...++|+||+ +||+.+|++-.
T Consensus 153 grt~~~a~~~i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 153 GKDEEAAKKLLEDALALEEAGAQLLVLEC 181 (263)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 355666788888885 78999999864
No 169
>PRK12856 hypothetical protein; Provisional
Probab=37.87 E-value=40 Score=26.08 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPR 161 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv 161 (234)
+..++|.++|++.|+.||+ +.+|+..
T Consensus 60 ~A~~rm~~~A~~lGAnAVvgvr~d~~~ 86 (103)
T PRK12856 60 IAMDEMKELAKQKGANAIVGVDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 4567899999999999976 6666654
No 170
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=37.83 E-value=1.9e+02 Score=25.28 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHH---------------HHHHHHHHHHHcCCcE
Q 026729 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRN---------------VVAQLVRRAERAGFKA 152 (234)
Q Consensus 89 gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~---------------~~~~li~rA~~aG~~A 152 (234)
.|....+...+.+....+........++|..+.. +..++.++.+.+.. ...+.++.|++.|+..
T Consensus 47 ~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 126 (259)
T cd07939 47 EEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV 126 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 4444556666554444455555566778864432 56789998876543 3457888899999865
Q ss_pred EEEeeCC
Q 026729 153 IALTVDT 159 (234)
Q Consensus 153 lvvTvD~ 159 (234)
-+-..|.
T Consensus 127 ~~~~~~~ 133 (259)
T cd07939 127 SVGAEDA 133 (259)
T ss_pred EEeeccC
Confidence 4433343
No 171
>PLN02858 fructose-bisphosphate aldolase
Probab=37.82 E-value=57 Score=35.99 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCceEeCCCCC----CCHH------HHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 91 YATARAASAAGTIMTLSSWST----SSVE------EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss----~sle------~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.++.+||++.+.|.|+...-. ..++ ..++...-|....| |.....+.+.+|-++||+-+++.
T Consensus 1128 ~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHL----DHg~~~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1128 EAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHF----DHGTSKHELLEALELGFDSVMVD 1199 (1378)
T ss_pred HHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEEEe
Confidence 367888888888888865432 1222 22222233444444 77767778888888888887654
No 172
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=37.82 E-value=75 Score=27.38 Aligned_cols=95 Identities=8% Similarity=-0.005 Sum_probs=59.8
Q ss_pred ecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCC------------ccEEEEeeeCCHHHHHHHHH
Q 026729 76 IAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG------------IRFFQLYVYKDRNVVAQLVR 143 (234)
Q Consensus 76 iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~------------~~wfQlY~~~d~~~~~~li~ 143 (234)
|.=+|+-.+.+++-=..+.++|++.|+..++=|.+..+.+.+.+..+. +..++-|.-.+.+.+.+-++
T Consensus 42 Vt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~ 121 (213)
T PRK10076 42 VTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLR 121 (213)
T ss_pred EEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHH
Confidence 333445556777666789999999999999998887776555432221 11112222334456667788
Q ss_pred HHHHcCCcEEEEeeCCCCCCchhhHhh
Q 026729 144 RAERAGFKAIALTVDTPRLGRREADIK 170 (234)
Q Consensus 144 rA~~aG~~AlvvTvD~pv~G~Re~d~r 170 (234)
.+.+.|..-.+-|+=.|-.-.-+.+++
T Consensus 122 ~l~~~g~~v~iR~~vIPg~nd~~e~i~ 148 (213)
T PRK10076 122 LLVSEGVNVIPRLPLIPGFTLSRENMQ 148 (213)
T ss_pred HHHhCCCcEEEEEEEECCCCCCHHHHH
Confidence 888899877766665554333444444
No 173
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.67 E-value=1.5e+02 Score=27.65 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHcCCcE
Q 026729 136 NVVAQLVRRAERAGFKA 152 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~A 152 (234)
+...++++++.++|++.
T Consensus 141 ~~l~~~~~~~~~~g~~~ 157 (363)
T TIGR02090 141 DFLIKVFKRAEEAGADR 157 (363)
T ss_pred HHHHHHHHHHHhCCCCE
Confidence 44555555555555554
No 174
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=37.59 E-value=2.4e+02 Score=25.05 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=57.1
Q ss_pred cceEecccccccccCchhHHHHHHHHHh-cCCc--eEeCCCC---CCCHHHHH-------hcCC--CccEEEEeeeCCHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTI--MTLSSWS---TSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~-~gi~--~~lSs~s---s~sle~ia-------~~~~--~~~wfQlY~~~d~~ 136 (234)
.|..+.|+.-.+-.+.++=..+.+-.-+ .|+- ++.+|.+ +.|.||-. +..+ -+...++- ..+-.
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4667778776666777887888888887 7764 3455544 44555532 2223 24567662 23456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 026729 137 VVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTv 157 (234)
.+.++.+.|+++|++++++.-
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 678899999999999999884
No 175
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.58 E-value=31 Score=30.28 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=33.4
Q ss_pred cEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 026729 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (234)
Q Consensus 125 ~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G 163 (234)
.-.||=-.++.+...+++.+.+.+||.+.+-.. +|+.|
T Consensus 152 ~~VQLgAl~n~dranel~~~Lr~~G~~ayi~~~-~p~qg 189 (226)
T COG3147 152 FVVQLGALKNADRANELVAKLRGAGYRAYIEPS-TPVQG 189 (226)
T ss_pred eeehhhhhhhHHHHHHHHHHHHhCCCceeeccc-CCCCC
Confidence 348998899999999999999999999999888 67654
No 176
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=37.12 E-value=1.1e+02 Score=28.89 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCCceEeC---CCCCCCHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLS---SWSTSSVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lS---s~ss~sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.|..|+|.||..+|+-++.+ |-+|.=+|.+++..+ +..|.|. .|.--..+..-=|-.+|++++.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~---E~E~aA~~~aiGAs~aGaRa~TaT 79 (390)
T PRK08366 7 SGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPV---ESEHSAMAACIGASAAGARAFTAT 79 (390)
T ss_pred eHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 69999999999999988765 333333455554322 4567885 666666777777778888876544
No 177
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=36.97 E-value=1.2e+02 Score=24.96 Aligned_cols=42 Identities=31% Similarity=0.585 Sum_probs=34.0
Q ss_pred ccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEE-eeCCCCC-Cch
Q 026729 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL-TVDTPRL-GRR 165 (234)
Q Consensus 124 ~~wfQlY~~~d~~~~~~li~rA~~aG~~Alvv-TvD~pv~-G~R 165 (234)
....+.+...+.+...++.+++.+.|+..+|+ ..|++.. |+|
T Consensus 151 i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkr 194 (202)
T PF01068_consen 151 IRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKR 194 (202)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEE
T ss_pred eeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCc
Confidence 34556666788889999999999999999999 6798864 665
No 178
>PRK01119 hypothetical protein; Provisional
Probab=36.82 E-value=42 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPRLG 163 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv~G 163 (234)
+...+|.++|++.|+.||| +.+|+...|
T Consensus 60 ~A~~rm~~~A~~lGAnAVIgvr~d~~~ig 88 (106)
T PRK01119 60 EAIREMEQRAKDIGANAVIGVDIDYEVLG 88 (106)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 3567899999999999987 677776543
No 179
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=36.64 E-value=49 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 136 NVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
-.+.+++++|.++|.+..+.|||.
T Consensus 136 ~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 136 IKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred hcCHHHHHHHHHCCCEEEEEeeCC
Confidence 356799999999999999999997
No 180
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=36.48 E-value=2e+02 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 026729 137 VVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvT 156 (234)
...+++++.+++|++.|.|+
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 139 ETLELAKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHHHHHHhCCCEEEEC
Confidence 55667777777777766553
No 181
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=36.37 E-value=2.5e+02 Score=25.58 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=47.4
Q ss_pred cCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCC---------CCC----H----HHHHhcCCCccEEEEeee
Q 026729 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TSS----V----EEVASTGPGIRFFQLYVY 132 (234)
Q Consensus 70 ~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~s---------s~s----l----e~ia~~~~~~~wfQlY~~ 132 (234)
+..|++++=.+. .++.-..+|+.+.++|.-++-=..+ ... + ++|++...-|.|..+..
T Consensus 100 ~~~pvi~sI~g~----~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p- 174 (334)
T PRK07565 100 VDIPVIASLNGS----SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP- 174 (334)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC-
Confidence 356776654332 2333356777887777544311111 011 2 33444444567888743
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 133 KDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 133 ~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+-....++.+.++++|+++|+++
T Consensus 175 -~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 175 -YFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred -CchhHHHHHHHHHHcCCCeEEEE
Confidence 33346788899999999999886
No 182
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.32 E-value=36 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred cEEEEeee---CCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 125 RFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 125 ~wfQlY~~---~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
..|=.|+. .|.+.+.++++...++|++.|=+.+
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi 45 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGV 45 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 45666764 5777889999999999999876654
No 183
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=36.18 E-value=86 Score=28.57 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=50.3
Q ss_pred ecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHH
Q 026729 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRR 144 (234)
Q Consensus 65 l~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~r 144 (234)
+|+-.+.-|==-||-+++++.-.+|=.-++++.++.|+|.+.=-..+.-.|.+++... .+|+=-. --.+.+|++.
T Consensus 51 ~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~vD---ilQIgAr--~~rntdLL~a 125 (281)
T PRK12457 51 VFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEVAD---VLQVPAF--LARQTDLVVA 125 (281)
T ss_pred EeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhhCe---EEeeCch--hhchHHHHHH
Confidence 5555555444457888888865788888999999999998875555555555555432 5555111 1122466666
Q ss_pred HHHcC
Q 026729 145 AERAG 149 (234)
Q Consensus 145 A~~aG 149 (234)
|.+.|
T Consensus 126 ~~~t~ 130 (281)
T PRK12457 126 IAKTG 130 (281)
T ss_pred HhccC
Confidence 55554
No 184
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=35.73 E-value=2.9e+02 Score=24.52 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=46.1
Q ss_pred cCcceEecccccccccCchhHHHHHHHHHhcC-CceE-e--CC----C-CC------CCHHH----HHhcCCCccEEEEe
Q 026729 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMT-L--SS----W-ST------SSVEE----VASTGPGIRFFQLY 130 (234)
Q Consensus 70 ~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~g-i~~~-l--Ss----~-ss------~sle~----ia~~~~~~~wfQlY 130 (234)
+..|++++=.|. .++.=...|+-++++| .-++ + |. . +. .-+.+ |.+...-+.+..+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 356777755442 3444456777777777 4333 1 11 0 00 01233 33333446677763
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 131 VYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 131 ~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.+-+...++.++++++|+++|+++
T Consensus 166 --~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 166 --PNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred --CCchhHHHHHHHHHHcCCCEEEEE
Confidence 344456788899999999998764
No 185
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=35.58 E-value=2.5e+02 Score=25.46 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=50.3
Q ss_pred ecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCC-------------HHHHHHH
Q 026729 76 IAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKD-------------RNVVAQL 141 (234)
Q Consensus 76 iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d-------------~~~~~~l 141 (234)
|.=+|+--|.||+- ..+.+.+.+.|....+.|.++.--+++.+-.+ +...+++.+... -+.+.+-
T Consensus 76 V~i~GGEPLL~pdl-~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~ 154 (318)
T TIGR03470 76 VSIPGGEPLLHPEI-DEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEA 154 (318)
T ss_pred EEEeCccccccccH-HHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHH
Confidence 33457667899985 56777888889888888888654344433222 334577766432 1355677
Q ss_pred HHHHHHcCCcEEE
Q 026729 142 VRRAERAGFKAIA 154 (234)
Q Consensus 142 i~rA~~aG~~Alv 154 (234)
|+.+.++|+..-+
T Consensus 155 I~~l~~~G~~v~v 167 (318)
T TIGR03470 155 IREAKARGFRVTT 167 (318)
T ss_pred HHHHHHCCCcEEE
Confidence 8888889986444
No 186
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.40 E-value=1.8e+02 Score=25.47 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=19.5
Q ss_pred CchhHHHHHHHHHhcCCceEeCCC
Q 026729 86 HPEGEYATARAASAAGTIMTLSSW 109 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ 109 (234)
|.|||+ +|+-.+++|...+.+|.
T Consensus 77 s~DGEl-iA~~l~kfG~~~IRGSs 99 (214)
T COG2121 77 SRDGEL-IARLLEKFGLRVIRGSS 99 (214)
T ss_pred CcCHHH-HHHHHHHcCceEEeccC
Confidence 678887 57889999999999875
No 187
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.36 E-value=1.9e+02 Score=21.54 Aligned_cols=66 Identities=20% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 94 AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
+......|.+....+.............++..++=+-..++...+.++++.|++.|++.+++|-+.
T Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 32 AYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 334445555544433222222222222334455555555666677889999999999999999764
No 188
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=35.34 E-value=1.1e+02 Score=28.81 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhcCCceEeC---CCCCCCHHHHHhcCC--CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLS---SWSTSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lS---s~ss~sle~ia~~~~--~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.|..|+|+||..+|.-++.+ |-||.=+|.+++..+ +...+|. .|.-....+.-=|-.+|++++.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~---E~E~aA~~~a~GAs~aG~Ra~taT 77 (375)
T PRK09627 7 TGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM---EDEISGISVALGASMSGVKSMTAS 77 (375)
T ss_pred chHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc---CCHHHHHHHHHHHHhhCCCEEeec
Confidence 68999999999999987765 222222455554332 4456775 566666777777788899998877
No 189
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.24 E-value=61 Score=27.77 Aligned_cols=20 Identities=5% Similarity=-0.004 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHhCCCcccc
Q 026729 211 SLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 211 ~~tW~di~wlr~~w~l~~~~ 230 (234)
..+|+-++.+++..++||.+
T Consensus 179 g~~~~~i~~i~~~~~iPvia 198 (241)
T PRK13585 179 GVNTEPVKELVDSVDIPVIA 198 (241)
T ss_pred CCCHHHHHHHHHhCCCCEEE
Confidence 35788888888888888754
No 190
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=35.24 E-value=55 Score=29.22 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHH----HHHHHHHHHHcCCcEEEEee
Q 026729 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV----VAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 92 a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~----~~~li~rA~~aG~~AlvvTv 157 (234)
-+.++|.++|.-.++-+-- .-....+...||++|...-++. ..+..+++++.|+--|+||.
T Consensus 112 lI~~~a~~FGsQciVvaID-----akr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts 176 (256)
T COG0107 112 LITEAADRFGSQCIVVAID-----AKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS 176 (256)
T ss_pred HHHHHHHHhCCceEEEEEE-----eeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee
Confidence 5778888888877764321 1111111356999999876654 45778888999999999985
No 191
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=34.85 E-value=1.2e+02 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=34.1
Q ss_pred cccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC
Q 026729 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121 (234)
Q Consensus 77 aP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~ 121 (234)
||-+++++.-.+|=.-++++..+.|+|.+.=-..+.-+|.+++..
T Consensus 63 Sp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~~ 107 (290)
T PLN03033 63 SSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVA 107 (290)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhhC
Confidence 677888886578888899999999999887655555556555543
No 192
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=34.81 E-value=1.3e+02 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=19.3
Q ss_pred eCCHHHHHHHHHHHH---HcCCcEEEEe
Q 026729 132 YKDRNVVAQLVRRAE---RAGFKAIALT 156 (234)
Q Consensus 132 ~~d~~~~~~li~rA~---~aG~~AlvvT 156 (234)
-++.+...++++||+ +||+.+|++-
T Consensus 154 grt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 154 GRDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 355555788888885 7899999985
No 193
>PRK00967 hypothetical protein; Provisional
Probab=34.53 E-value=48 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPRLG 163 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv~G 163 (234)
+...+|.++|++.|+.||+ |.+|+...+
T Consensus 60 eA~~rm~~~A~~~GAnAIIgvr~d~~~~~ 88 (105)
T PRK00967 60 IAIDRMKEEAKQKGANAIVGMRFDSSSIR 88 (105)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 4567899999999999987 788877553
No 194
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=34.47 E-value=2.6e+02 Score=26.48 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=49.9
Q ss_pred CcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCC---C-----------CC---HHHHH----hcCCCccEEEE
Q 026729 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---T-----------SS---VEEVA----STGPGIRFFQL 129 (234)
Q Consensus 71 ~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~s---s-----------~s---le~ia----~~~~~~~wfQl 129 (234)
..|++.|=++.. .++.=..+++-..+.|+-++-=+.| . .. +++|. +...-|.|..|
T Consensus 113 ~~pvIaSi~~~~---s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEY---NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCC---CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 458888744422 2233345888888877544422222 1 11 33332 22335789998
Q ss_pred eeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 130 YVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 130 Y~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
-+ |-....++.+.|+++|+++|+++=
T Consensus 190 sP--n~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 190 TP--NITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred CC--ChhhHHHHHHHHHHhCCCEEEEec
Confidence 54 444578899999999999998853
No 195
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=34.43 E-value=47 Score=25.97 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPRLG 163 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv~G 163 (234)
....+|.++|++.|+.|+| |-+|+...|
T Consensus 60 ~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 60 EALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 3567899999999999975 566655443
No 196
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=34.27 E-value=2.6e+02 Score=24.59 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=48.3
Q ss_pred cccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEE--EEeeeC----------CHHHHHHHHHH
Q 026729 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFF--QLYVYK----------DRNVVAQLVRR 144 (234)
Q Consensus 77 aP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wf--QlY~~~----------d~~~~~~li~r 144 (234)
.=+|+--+.|++.-..+++.+++.|+...+.|.+...-+.+.+..+...++ ++-... +.+.+.+-|+.
T Consensus 130 ~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~~~~vl~~i~~ 209 (295)
T TIGR02494 130 TLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGVDNEPILENLEA 209 (295)
T ss_pred EeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCCChHHHHHHHHH
Confidence 334555567876656788899999999999888876655554433322233 332221 22344556677
Q ss_pred HHHcCCcEEEEe
Q 026729 145 AERAGFKAIALT 156 (234)
Q Consensus 145 A~~aG~~AlvvT 156 (234)
+.+.|.+..+-+
T Consensus 210 l~~~~~~~~i~~ 221 (295)
T TIGR02494 210 LAAAGKNVVIRI 221 (295)
T ss_pred HHhCCCcEEEEe
Confidence 777786654444
No 197
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.17 E-value=1.3e+02 Score=26.83 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=49.1
Q ss_pred ccEEEEeee---CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccH
Q 026729 124 IRFFQLYVY---KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (234)
Q Consensus 124 ~~wfQlY~~---~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (234)
...|=.|+. .|.+.+.++++...++|++.|=|.+ | |+.|. . .+..+
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--P------------fSDP~---------------a--DGpvI 62 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGI--P------------YSDPL---------------A--DGPII 62 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--C------------CCCCC---------------c--cCHHH
Confidence 346667763 5778889999999999998865543 1 22221 0 11112
Q ss_pred HHH----hhhcCCCCCChHHHHHHHHhCCCcccccccC
Q 026729 201 AAY----VAGQIDRSLSWKNILCLYQDFSFECDVMLYE 234 (234)
Q Consensus 201 ~~~----~~~~~~~~~tW~di~wlr~~w~l~~~~~~~~ 234 (234)
.+. +..-.+..-.|+.++.+|+.-+.|+++|.|.
T Consensus 63 q~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~ 100 (263)
T CHL00200 63 QEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYY 100 (263)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecc
Confidence 111 1211222234677888998889999999983
No 198
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=33.97 E-value=40 Score=30.12 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.0
Q ss_pred cceeecCcccCcceEecc
Q 026729 61 MNTTVLGFKISMPIMIAP 78 (234)
Q Consensus 61 ~sttl~G~~~~~Pi~iaP 78 (234)
++|+++|.++.-||++|.
T Consensus 2 L~~~~~Gl~l~nPi~~as 19 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS 19 (295)
T ss_dssp G-EEETTEEESSSEEE-T
T ss_pred ccEEECCEEcCCCcEECC
Confidence 789999999999999974
No 199
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=33.95 E-value=2.9e+02 Score=24.48 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred ccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHH---HhcCCCccEE----------EEeeeCCHHHHHHHHHHHH
Q 026729 80 AMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV---ASTGPGIRFF----------QLYVYKDRNVVAQLVRRAE 146 (234)
Q Consensus 80 g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~i---a~~~~~~~wf----------QlY~~~d~~~~~~li~rA~ 146 (234)
|+--+.+++.-..++++|++.|+..++-|.+..+-+.+ .+.. +...+ +-+...+.+.+.+-++.+.
T Consensus 91 GGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~-D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~ 169 (260)
T COG1180 91 GGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLL-DAVLLDLKAFDDELYRKLTGADNEPVLENLELLA 169 (260)
T ss_pred CCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhc-CeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHH
Confidence 33345566777889999999999999999997765554 2222 11222 2222333356667777777
Q ss_pred HcCCcEEEEeeCCCCCCchhhHhh
Q 026729 147 RAGFKAIALTVDTPRLGRREADIK 170 (234)
Q Consensus 147 ~aG~~AlvvTvD~pv~G~Re~d~r 170 (234)
+.|...-+-|+=.|-....+.|++
T Consensus 170 ~~g~~ve~r~lviPg~~d~~e~i~ 193 (260)
T COG1180 170 DLGVHVEIRTLVIPGYNDDEEEIR 193 (260)
T ss_pred cCCCeEEEEEEEECCCCCCHHHHH
Confidence 888877777777775555666665
No 200
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.90 E-value=77 Score=26.06 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=44.7
Q ss_pred cCcccCcceEecccccccccCchhHHHHHHHHHhcCCc-eEeCCCC-CCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHH
Q 026729 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWS-TSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVR 143 (234)
Q Consensus 66 ~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~-~~lSs~s-s~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~ 143 (234)
+-+.++.|+.-=|++.. |==.++.+|- +.+-. -+++..+ ...++.+....+ .=+..|...+.+.....++
T Consensus 48 lr~~~~iPVV~I~~s~~-----Dil~al~~a~-~~~~~Iavv~~~~~~~~~~~~~~ll~--~~i~~~~~~~~~e~~~~i~ 119 (176)
T PF06506_consen 48 LRKHVSIPVVEIPISGF-----DILRALAKAK-KYGPKIAVVGYPNIIPGLESIEELLG--VDIKIYPYDSEEEIEAAIK 119 (176)
T ss_dssp HHCC-SS-EEEE---HH-----HHHHHHHHCC-CCTSEEEEEEESS-SCCHHHHHHHHT---EEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCCEEEECCCHh-----HHHHHHHHHH-hcCCcEEEEecccccHHHHHHHHHhC--CceEEEEECCHHHHHHHHH
Confidence 33445677776665544 2233444433 33322 2333222 334677766543 2466677789999999999
Q ss_pred HHHHcCCcEEEE
Q 026729 144 RAERAGFKAIAL 155 (234)
Q Consensus 144 rA~~aG~~Alvv 155 (234)
++++.|++++|=
T Consensus 120 ~~~~~G~~viVG 131 (176)
T PF06506_consen 120 QAKAEGVDVIVG 131 (176)
T ss_dssp HHHHTT--EEEE
T ss_pred HHHHcCCcEEEC
Confidence 999999988773
No 201
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=33.81 E-value=51 Score=29.38 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHc-CCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERA-GFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~a-G~~AlvvTvD~p 160 (234)
.+.+++++|.++ |.+..+.|||.+
T Consensus 217 ~t~~~V~~~h~~~gl~V~~WTVN~~ 241 (263)
T cd08580 217 WTPAAVDCFRRNSKVKIVLFGINTA 241 (263)
T ss_pred CCHHHHHHHHhcCCcEEEEEEeCCH
Confidence 458899999999 999999999876
No 202
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=33.81 E-value=64 Score=21.78 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=22.5
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
+..++|+.-.++++...+++++.+..|.++.+
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~ 34 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYV 34 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcce
Confidence 34679999999999999999999999988764
No 203
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=32.77 E-value=69 Score=29.30 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHhcCCceEeCCCCCCCHHHHHhcCC-----------CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 95 RAASAAGTIMTLSSWSTSSVEEVASTGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 95 raA~~~gi~~~lSs~ss~sle~ia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.+-+..+..|+.=..-...++++.+..| ...|.+++..-++....+++++.++.|++.|+|.
T Consensus 211 gvi~a~~~~~i~~n~p~~~ld~v~~llpg~~~pTi~~l~~~~~vav~~vv~~~~~~~~~~~lk~~GA~~Ilv~ 283 (290)
T COG0040 211 GVIEARGSKYIMLNAPRERLDEVTALLPGMEGPTILPLADPGWVAVHAVVDESLVWETMEKLKALGASDILVL 283 (290)
T ss_pred HHHhhcceeEEEeeCCHHHHHHHHHhccCCCCCcccccCCCCeEEEEEEecchhHHHHHHHHHhcCcceeEEe
Confidence 3444556777776666667777765322 2579999999999999999999999999999874
No 204
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=32.53 E-value=1.3e+02 Score=29.59 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCceEeCCCCCCCHHHHHh---cCCCccEEEEeee--CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCc-
Q 026729 91 YATARAASAAGTIMTLSSWSTSSVEEVAS---TGPGIRFFQLYVY--KDRNVVAQLVRRAERAGFKAIALTVDTPRLGR- 164 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~sle~ia~---~~~~~~wfQlY~~--~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~- 164 (234)
..++++|-++|..++.|-.+ ..++++.. .. +....-+... .+-+...+.+++|+++|++.|++ | |.+|-
T Consensus 218 ~~v~eaAL~aGAdiINsVs~-~~~d~~~~l~a~~-g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIl--D-Pglg~~ 292 (499)
T TIGR00284 218 LDELYEALKAGASGVIMPDV-ENAVELASEKKLP-EDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAA--D-PSLSPP 292 (499)
T ss_pred HHHHHHHHHcCCCEEEECCc-cchhHHHHHHHHc-CCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEE--e-CCCCcc
Confidence 35677777889999887544 34666532 22 2233333322 12267789999999999976554 4 33342
Q ss_pred ---------hhhHhhccCCCCCcCcccccc
Q 026729 165 ---------READIKNRFTLPPFLTLKNFQ 185 (234)
Q Consensus 165 ---------Re~d~r~~f~~p~~~~~~~~~ 185 (234)
|.+..|..+..|.-+...|+.
T Consensus 293 ~~~l~~sL~~l~~~r~~~~~Pil~GvSNvt 322 (499)
T TIGR00284 293 LLGLLESIIRFRRASRLLNVPLVFGAANVT 322 (499)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEeecccc
Confidence 344444445555444444553
No 205
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=32.43 E-value=1.5e+02 Score=26.74 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCcEEEEeeCCC
Q 026729 140 QLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 140 ~li~rA~~aG~~AlvvTvD~p 160 (234)
+++++|+++|.+..+-|||.+
T Consensus 241 ~~v~~a~~~Gl~v~vwTvn~~ 261 (300)
T cd08604 241 NVVEKLQSANLTVYVEVLRNE 261 (300)
T ss_pred HHHHHHHHCCCEEEEEEecCC
Confidence 789999999999999999876
No 206
>PRK01217 hypothetical protein; Provisional
Probab=31.98 E-value=55 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTPRLG 163 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~pv~G 163 (234)
+...+|.++|++.|+.||+ |.+|+...|
T Consensus 67 eA~~rm~~~A~~lGAnAVVgvrfd~s~i~ 95 (114)
T PRK01217 67 QALERMIDHAKELGANAVINVRFDSNEIS 95 (114)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEHHHhc
Confidence 3567899999999999976 677766544
No 207
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.85 E-value=79 Score=29.61 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCC
Q 026729 86 HPEGEYATARAASAAGTIMTLSSW 109 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ 109 (234)
+.+.=.++.+||++.+.|.++...
T Consensus 25 n~e~~~avi~AAee~~sPvIiq~s 48 (345)
T cd00946 25 SSSTINAVLEAARDAKSPIIIQFS 48 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECC
Confidence 344556888999999999988653
No 208
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=31.51 E-value=1.3e+02 Score=26.98 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=65.5
Q ss_pred HHhcCCceEeCCCCCCCHHHH------HhcCCCccEEEEeeeCCHHH----HHHHHHHHH---HcCCcEEEEeeCCCCCC
Q 026729 97 ASAAGTIMTLSSWSTSSVEEV------ASTGPGIRFFQLYVYKDRNV----VAQLVRRAE---RAGFKAIALTVDTPRLG 163 (234)
Q Consensus 97 A~~~gi~~~lSs~ss~sle~i------a~~~~~~~wfQlY~~~d~~~----~~~li~rA~---~aG~~AlvvTvD~pv~G 163 (234)
-...|+.+.=-|.+-++-||- +....+..|.+|-+..|... ..++++-|| +-||..+..|-|-|+.-
T Consensus 65 l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~a 144 (262)
T COG2022 65 LIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLA 144 (262)
T ss_pred hhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHH
Confidence 334444444344444555442 22223457999877766542 346666665 56999999999999999
Q ss_pred chhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCcccc
Q 026729 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFECDV 230 (234)
Q Consensus 164 ~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~~~ 230 (234)
+|-.|.=-.-.+|..-.. +.+.+ -.+-.-|+-|+++-+.||+|
T Consensus 145 rrLee~GcaavMPl~aPI-------------GSg~G-----------~~n~~~l~iiie~a~VPviV 187 (262)
T COG2022 145 RRLEEAGCAAVMPLGAPI-------------GSGLG-----------LQNPYNLEIIIEEADVPVIV 187 (262)
T ss_pred HHHHhcCceEeccccccc-------------cCCcC-----------cCCHHHHHHHHHhCCCCEEE
Confidence 998886544445521100 00000 12345688888888888876
No 209
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=31.45 E-value=46 Score=26.24 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPRLG 163 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv~G 163 (234)
-..+++++|++.|++.|++|==....|
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~ 43 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNFAG 43 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTTTT
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccccc
Confidence 457899999999999999985544444
No 210
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=31.38 E-value=1.7e+02 Score=23.80 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=30.2
Q ss_pred EEEeeeCCHHHHHHHHHHHHHcCCcEEEEe-eCCCCCCch
Q 026729 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRR 165 (234)
Q Consensus 127 fQlY~~~d~~~~~~li~rA~~aG~~AlvvT-vD~pv~G~R 165 (234)
...+.-.+.+...++++++.+.|+..||+- .|++..+.|
T Consensus 126 ~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR 165 (174)
T cd07896 126 VPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPDAPYETGR 165 (174)
T ss_pred EeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCCCcccCCc
Confidence 344445677888999999999999999999 577764444
No 211
>PLN02591 tryptophan synthase
Probab=31.32 E-value=1.6e+02 Score=26.12 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCC-
Q 026729 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS- 211 (234)
Q Consensus 133 ~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (234)
.|.+.+.++++...++|++.|=|.+ | |+.|. . .+..+.......+...
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGi--P------------fSDP~---------------a--DGpvIq~a~~rAL~~G~ 61 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGV--P------------YSDPL---------------A--DGPVIQAAATRALEKGT 61 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--C------------CCCCc---------------c--cCHHHHHHHHHHHHcCC
Confidence 5677889999999999998865533 1 22221 0 1111111111112222
Q ss_pred ---CChHHHHHHHHhCCCcccccccC
Q 026729 212 ---LSWKNILCLYQDFSFECDVMLYE 234 (234)
Q Consensus 212 ---~tW~di~wlr~~w~l~~~~~~~~ 234 (234)
-.++.++.+|+..+.|+++|.|.
T Consensus 62 ~~~~~~~~~~~~r~~~~~p~ilm~Y~ 87 (250)
T PLN02591 62 TLDSVISMLKEVAPQLSCPIVLFTYY 87 (250)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEecc
Confidence 23667888888889999999984
No 212
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.07 E-value=2.7e+02 Score=25.82 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.3
Q ss_pred HHHHHHHHcCCc
Q 026729 140 QLVRRAERAGFK 151 (234)
Q Consensus 140 ~li~rA~~aG~~ 151 (234)
+.++.|++.|.+
T Consensus 117 ~~i~~ak~~g~~ 128 (365)
T TIGR02660 117 RLVSFARDRGLF 128 (365)
T ss_pred HHHHHHHhCCCE
Confidence 344444444443
No 213
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=30.86 E-value=73 Score=29.40 Aligned_cols=39 Identities=31% Similarity=0.448 Sum_probs=26.1
Q ss_pred cceeecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEe
Q 026729 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL 106 (234)
Q Consensus 61 ~sttl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~l 106 (234)
++|+++|.++..||++| .|. ...+| ..+...+.|..+++
T Consensus 46 L~~~~~Gl~l~NPi~lA-sG~----~~~~~--~~~~~~~~G~Gavv 84 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLA-AGF----DKDGE--AIDALGAMGFGFLE 84 (335)
T ss_pred CcEEECCEECCCCcEeC-Ccc----CCCHH--HHHHHHhcCCCEEE
Confidence 89999999999999993 332 23455 34444455655544
No 214
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=30.81 E-value=3.3e+02 Score=23.63 Aligned_cols=39 Identities=0% Similarity=-0.089 Sum_probs=29.0
Q ss_pred CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
+.+.-.|++ -.|.+...+..+++++ +++.|=+..-+|+.
T Consensus 72 ~~p~~vqi~-g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~ 110 (233)
T cd02911 72 NVLVGVNVR-SSSLEPLLNAAALVAK-NAAILEINAHCRQP 110 (233)
T ss_pred CCeEEEEec-CCCHHHHHHHHHHHhh-cCCEEEEECCCCcH
Confidence 346789996 4567777888888877 45888888888864
No 215
>PRK06361 hypothetical protein; Provisional
Probab=30.44 E-value=53 Score=27.60 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
...+++++|.+.|+++|++|==.+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~ 35 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADA 35 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCC
Confidence 4689999999999999999966554
No 216
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=30.43 E-value=1.2e+02 Score=27.97 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=47.1
Q ss_pred cccccccc-CchhHHHHHHHHHhcC-CceEe---CCCCCCC----------HHHHH----hcCCCccEEEEeeeCCHHHH
Q 026729 78 PTAMQKMA-HPEGEYATARAASAAG-TIMTL---SSWSTSS----------VEEVA----STGPGIRFFQLYVYKDRNVV 138 (234)
Q Consensus 78 P~g~~~l~-~p~gE~a~AraA~~~g-i~~~l---Ss~ss~s----------le~ia----~~~~~~~wfQlY~~~d~~~~ 138 (234)
+++..... .+++....++...+++ .-++- |+--+.. ++++. +...-|.+..|-+ +.+..
T Consensus 98 ~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di 175 (310)
T COG0167 98 NIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDI 175 (310)
T ss_pred ceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHH
Confidence 44444333 2445556777777766 33332 3322222 22222 2233567888854 88889
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 026729 139 AQLVRRAERAGFKAIALT 156 (234)
Q Consensus 139 ~~li~rA~~aG~~AlvvT 156 (234)
.++.+.|+++|+++|+++
T Consensus 176 ~~iA~~~~~~g~Dgl~~~ 193 (310)
T COG0167 176 DEIAKAAEEAGADGLIAI 193 (310)
T ss_pred HHHHHHHHHcCCcEEEEE
Confidence 999999999999999986
No 217
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=30.41 E-value=1.1e+02 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=26.6
Q ss_pred HhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 118 ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 118 a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.+..+-+.+..+ ..+.+...++.++++++|+++|+|+
T Consensus 153 r~~~~~pv~vKi--~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 153 KDKTDVPVFAKL--SPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHhcCCCEEEEC--CCChhhHHHHHHHHHHcCCCEEEEE
Confidence 333344667776 3354567889999999999999885
No 218
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.39 E-value=3.7e+02 Score=23.47 Aligned_cols=91 Identities=10% Similarity=0.161 Sum_probs=56.9
Q ss_pred ccCcceEecccccccccCchhHHHHHHHHH--hcCCceE-eCCCCCCCHHHHHhcCCCccEEE-------------Eee-
Q 026729 69 KISMPIMIAPTAMQKMAHPEGEYATARAAS--AAGTIMT-LSSWSTSSVEEVASTGPGIRFFQ-------------LYV- 131 (234)
Q Consensus 69 ~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~--~~gi~~~-lSs~ss~sle~ia~~~~~~~wfQ-------------lY~- 131 (234)
.=.+||++---+..-|+=-.|++|.-|+.. ++|.-.. +|-.-+..++++++. +...|.| ++.
T Consensus 14 ~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~-~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 14 NKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY-GNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC-CCEEEEeCCCChHHhCCCcEEEEC
Confidence 345788887667666766689998777655 5554443 333334456665432 1233333 333
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
..|++.+..+.+.|++.| .+|..+|.|..
T Consensus 93 TdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 93 TDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 368888888888888876 46777887753
No 219
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=29.97 E-value=1.1e+02 Score=26.82 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+.+++++++++|.+..+.|||.+
T Consensus 211 ~~~~~v~~~~~~g~~v~~WTVn~~ 234 (252)
T cd08574 211 LSAQEIREYSKANISVNLYVVNEP 234 (252)
T ss_pred CCHHHHHHHHHCCCEEEEEccCCH
Confidence 467899999999999999999986
No 220
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=29.82 E-value=70 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchh
Q 026729 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (234)
Q Consensus 134 d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re 166 (234)
.++++.+|.+.|+++|+++|++-.-.|-.|-|+
T Consensus 61 HPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~ 93 (217)
T PF02593_consen 61 HPDLTYELPEIAKEAGVKAVIVPSESPKPGLRR 93 (217)
T ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCccchHH
Confidence 557999999999999999999999988755553
No 221
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=29.74 E-value=1e+02 Score=27.47 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHH---HcCCcEEEEee
Q 026729 133 KDRNVVAQLVRRAE---RAGFKAIALTV 157 (234)
Q Consensus 133 ~d~~~~~~li~rA~---~aG~~AlvvTv 157 (234)
++.+..+++++||+ +||+.+|++-.
T Consensus 152 rt~~~a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 152 KTEEEAERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 34555688888885 78999999843
No 222
>PLN02245 ATP phosphoribosyl transferase
Probab=29.71 E-value=2.6e+02 Score=26.86 Aligned_cols=60 Identities=20% Similarity=0.395 Sum_probs=45.6
Q ss_pred HHhcCCceEeCCCCCCCHHHHHhc-----------CC-------------CccEEEEeeeCCHHHHHHHHHHHHHcCCcE
Q 026729 97 ASAAGTIMTLSSWSTSSVEEVAST-----------GP-------------GIRFFQLYVYKDRNVVAQLVRRAERAGFKA 152 (234)
Q Consensus 97 A~~~gi~~~lSs~ss~sle~ia~~-----------~~-------------~~~wfQlY~~~d~~~~~~li~rA~~aG~~A 152 (234)
-.+.+-.|+.-.....++|++.+. +| ...|+-+...-+++...++|++.+++|++.
T Consensus 298 l~A~~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~ 377 (403)
T PLN02245 298 LRAEGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSG 377 (403)
T ss_pred HhhhcEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCe
Confidence 444566677767777888888755 11 125877877778899999999999999999
Q ss_pred EEEe
Q 026729 153 IALT 156 (234)
Q Consensus 153 lvvT 156 (234)
|.|+
T Consensus 378 IlV~ 381 (403)
T PLN02245 378 VLVS 381 (403)
T ss_pred EEEE
Confidence 9886
No 223
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=29.70 E-value=1.5e+02 Score=26.14 Aligned_cols=68 Identities=7% Similarity=0.004 Sum_probs=40.7
Q ss_pred HHHHHHhcCC--ceEeCCCCCCCHHHHHhcCCCccEEEEee-----------------------------eCCHH---HH
Q 026729 93 TARAASAAGT--IMTLSSWSTSSVEEVASTGPGIRFFQLYV-----------------------------YKDRN---VV 138 (234)
Q Consensus 93 ~AraA~~~gi--~~~lSs~ss~sle~ia~~~~~~~wfQlY~-----------------------------~~d~~---~~ 138 (234)
+.....+.+. ..++||+...+++.+.+..|...-..|+- ..+.. .+
T Consensus 160 v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (282)
T cd08605 160 ILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRN 239 (282)
T ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhhcC
Confidence 4444444443 57889998888888876555322222221 00111 24
Q ss_pred HHHHHHHHHcCCcEEEEee--CCC
Q 026729 139 AQLVRRAERAGFKAIALTV--DTP 160 (234)
Q Consensus 139 ~~li~rA~~aG~~AlvvTv--D~p 160 (234)
.+++++|+++|.+..+.|| |.+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n~~ 263 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNNDA 263 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCCCH
Confidence 5788888888888888887 654
No 224
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=29.62 E-value=1.6e+02 Score=27.60 Aligned_cols=64 Identities=31% Similarity=0.331 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCCCC----HHHHHhcCC--CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 026729 88 EGEYATARAASAAGTIMTLSSWSTSS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss~s----le~ia~~~~--~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alvv 155 (234)
.|..|+|+||..+|+-++.+ +--|| +|-+++..+ +..++|. .|.--..++.-=|-.+|++++.-
T Consensus 8 ~GNeAiA~ga~~ag~~~~a~-YPITPsTei~e~la~~~~~~~~~~vq~---E~E~aA~~~a~GAs~aG~Ra~Ta 77 (376)
T PRK08659 8 QGNEACAEGAIAAGCRFFAG-YPITPSTEIAEVMARELPKVGGVFIQM---EDEIASMAAVIGASWAGAKAMTA 77 (376)
T ss_pred ehHHHHHHHHHHhCCCEEEE-cCCCChHHHHHHHHHhhhhhCCEEEEe---CchHHHHHHHHhHHhhCCCeEee
Confidence 79999999999999987765 33333 344444333 3356664 56666667776777778777654
No 225
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=29.51 E-value=99 Score=28.21 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=27.6
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
-|.+..|-..-+.+...++.+.++++|+++|+++-
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 46889986544445678899999999999998874
No 226
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=29.43 E-value=81 Score=26.78 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=8.1
Q ss_pred ChHHHHHHHHhCCCcc
Q 026729 213 SWKNILCLYQDFSFEC 228 (234)
Q Consensus 213 tW~di~wlr~~w~l~~ 228 (234)
+|+-++.+++..+.||
T Consensus 177 ~~~~i~~i~~~~~ipv 192 (230)
T TIGR00007 177 NFELTKELVKAVNVPV 192 (230)
T ss_pred CHHHHHHHHHhCCCCE
Confidence 4555555555554444
No 227
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=29.38 E-value=1.4e+02 Score=27.25 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=27.3
Q ss_pred eEeCCCCCCCHHHHHh--cCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 104 MTLSSWSTSSVEEVAS--TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 104 ~~lSs~ss~sle~ia~--~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
++..+++..+-+-|.. ..+-..|.|+ -+.+..++|.++|+++||+.
T Consensus 116 ~v~~~~G~p~~~~i~~l~~~gi~v~~~v-------~s~~~A~~a~~~G~D~iv~q 163 (330)
T PF03060_consen 116 VVSFGFGLPPPEVIERLHAAGIKVIPQV-------TSVREARKAAKAGADAIVAQ 163 (330)
T ss_dssp EEEEESSSC-HHHHHHHHHTT-EEEEEE-------SSHHHHHHHHHTT-SEEEEE
T ss_pred EEEeecccchHHHHHHHHHcCCcccccc-------CCHHHHHHhhhcCCCEEEEe
Confidence 7777777554333332 2233445565 24455678999999999987
No 228
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=29.29 E-value=1.5e+02 Score=26.07 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCcEEEEee--CCC
Q 026729 138 VAQLVRRAERAGFKAIALTV--DTP 160 (234)
Q Consensus 138 ~~~li~rA~~aG~~AlvvTv--D~p 160 (234)
+.+++++++++|.+-.+.|| |.+
T Consensus 234 ~~~~v~~~~~~Gl~v~~WTv~~n~~ 258 (286)
T cd08606 234 CPRLIQVVKRSGLVCVSYGVLNNDP 258 (286)
T ss_pred ChHHHHHHHHCCcEEEEECCccCCH
Confidence 45788888889999888888 544
No 229
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=28.90 E-value=1.2e+02 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHH---HHcCCcEEEEee
Q 026729 133 KDRNVVAQLVRRA---ERAGFKAIALTV 157 (234)
Q Consensus 133 ~d~~~~~~li~rA---~~aG~~AlvvTv 157 (234)
++.+...+++++| ++||+.+||+-.
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLEC 203 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 4556677888888 478999999864
No 230
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.74 E-value=2.7e+02 Score=23.81 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcC--Cce-EeCCCCCCCHHHHHhcCC-CccEEEEeeeCC---------------HHHHHHHHHHHHHcCC
Q 026729 90 EYATARAASAAG--TIM-TLSSWSTSSVEEVASTGP-GIRFFQLYVYKD---------------RNVVAQLVRRAERAGF 150 (234)
Q Consensus 90 E~a~AraA~~~g--i~~-~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d---------------~~~~~~li~rA~~aG~ 150 (234)
+....+.+.+.+ +.+ ++... ..+++..+.. +..+++++...+ .+...+.++.|++.|+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 334444444444 555 44432 2555553322 467899988765 3566788888899998
Q ss_pred cEEEEeeCCC
Q 026729 151 KAIALTVDTP 160 (234)
Q Consensus 151 ~AlvvTvD~p 160 (234)
+..+-..|+.
T Consensus 130 ~v~~~~~~~~ 139 (265)
T cd03174 130 EVEGSLEDAF 139 (265)
T ss_pred eEEEEEEeec
Confidence 7666555654
No 231
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.62 E-value=2.4e+02 Score=24.93 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHH-----cCCcEEEEeeCCCCCCch
Q 026729 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER-----AGFKAIALTVDTPRLGRR 165 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~-----aG~~AlvvTvD~pv~G~R 165 (234)
.+++..+.+.|+|++.++.++.++.+.......+.+|++.. .+......+++-++. .|.+.+.+-.+.-..|..
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g~~ 159 (344)
T cd06345 81 LALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGP-TNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWGKG 159 (344)
T ss_pred HHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCC-CcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhhhH
Confidence 46788899999999876544443332111112334455532 333344445544443 455555554444444433
No 232
>PRK03732 hypothetical protein; Provisional
Probab=28.45 E-value=70 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeCCC
Q 026729 136 NVVAQLVRRAERAGFKAIA-LTVDTP 160 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~Alv-vTvD~p 160 (234)
+...+|.++|++.|+.||| |.+|+.
T Consensus 67 ~A~~rm~~~A~~lGAnAVVgvr~d~s 92 (114)
T PRK03732 67 EALRRMALHAKELGANAVVNFRFATS 92 (114)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEeh
Confidence 3567889999999999987 455544
No 233
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=28.21 E-value=1.9e+02 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
...+++++++++|.+..+.||+.+
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wtvn~~ 211 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWTVNEE 211 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 356888999999999999998865
No 234
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=27.90 E-value=91 Score=29.27 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHhcCCceEeCCC
Q 026729 86 HPEGEYATARAASAAGTIMTLSSW 109 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs~ 109 (234)
+.+-=.++.+||++.++|.++...
T Consensus 30 n~e~~~avi~AAee~~sPVIlq~s 53 (350)
T PRK09197 30 GTDSINAVLEGAAEAKSPVIIQFS 53 (350)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcC
Confidence 445556899999999999999753
No 235
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=27.79 E-value=3e+02 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 026729 136 NVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvT 156 (234)
..+.+++++++++|+++|.||
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEc
Confidence 345678888889999998877
No 236
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.78 E-value=2.5e+02 Score=25.35 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 026729 137 VVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvT 156 (234)
...+++++++++|+++|.|+
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEE
Confidence 35688888899999988876
No 237
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.62 E-value=2.9e+02 Score=24.27 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=47.2
Q ss_pred cceEecccccccccCchhHHHHHHHHHhcCC--ceEeCCCCCC---C---HHHHHhcCCCccEEEEeeeCCHHHHHHHHH
Q 026729 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGT--IMTLSSWSTS---S---VEEVASTGPGIRFFQLYVYKDRNVVAQLVR 143 (234)
Q Consensus 72 ~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi--~~~lSs~ss~---s---le~ia~~~~~~~wfQlY~~~d~~~~~~li~ 143 (234)
..|+++......-++..-..++-++|++.|. .......... - +|+..+...+-..+ .+.|.......++
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv---~~~d~~~~~~~v~ 110 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIII---NPVDPDALTPAVK 110 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEE---cCCChhhhHHHHH
Confidence 4455555444333333345567788888895 3333332221 1 23332222322222 2578899999999
Q ss_pred HHHHcCCcEEEEeeCCC
Q 026729 144 RAERAGFKAIALTVDTP 160 (234)
Q Consensus 144 rA~~aG~~AlvvTvD~p 160 (234)
+|.++|...+.+..+.+
T Consensus 111 ~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 111 KAKAAGIPVVTVDSDIP 127 (322)
T ss_pred HHHHCCCcEEEEecCCC
Confidence 99999976555444444
No 238
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=26.93 E-value=1.3e+02 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=25.7
Q ss_pred EEEeeeCCHH---HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 127 FQLYVYKDRN---VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 127 fQlY~~~d~~---~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
+++|...+.. .+-.|++++-..|-+.+|.|.|-.
T Consensus 4 ~~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~ 40 (144)
T COG2927 4 ATFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEA 40 (144)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3556544432 456899999999999999999964
No 239
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.72 E-value=3.4e+02 Score=24.88 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=59.8
Q ss_pred cCcccCcceEecccccccccCchhHHHHHHHHHhcCC-ceEeCCCCC-C--------CHHHHHhc-CCCccEEEEeeeCC
Q 026729 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWST-S--------SVEEVAST-GPGIRFFQLYVYKD 134 (234)
Q Consensus 66 ~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi-~~~lSs~ss-~--------sle~ia~~-~~~~~wfQlY~~~d 134 (234)
-...+..++++|||++. .|...-+-+.+.|. -.+.|-+-+ . ++..+... ...+.-.||. -.|
T Consensus 5 ~~~~~~~~~~lAPM~gv------td~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gsd 77 (323)
T COG0042 5 GLIELRNRVILAPMAGV------TDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GSD 77 (323)
T ss_pred ccccccCcEEEecCCCC------ccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CCC
Confidence 34567889999998854 35555566666666 444443321 1 22222222 1356899995 567
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 135 RNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 135 ~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
++...+-.+.+++.|++.|=|..=+|+
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~ 104 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPS 104 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCCh
Confidence 788889999999999999888888886
No 240
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.67 E-value=2.3e+02 Score=25.22 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=51.7
Q ss_pred HHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhH
Q 026729 93 TARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d 168 (234)
++..-...|.+..+.+-.......+....++...+=+-..+....+.+.++.|++.|++.|.+|--....--+..|
T Consensus 148 ~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 148 LAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred HHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhc
Confidence 4555566777777766554444333344556667777777877888999999999999999999764433333333
No 241
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=26.56 E-value=2.5e+02 Score=26.64 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCCceEeC---CCCCCCHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLS---SWSTSSVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lS---s~ss~sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+|..|+|+||..+|.-++.+ |-+|.=+|.+++-.+ +..|.|. .|..-....+-=|-.+|+++...|
T Consensus 8 ~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~---EsE~aA~~~~~GAs~aGaRa~TaT 80 (394)
T PRK08367 8 KANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKV---ESEHSAISACVGASAAGVRTFTAT 80 (394)
T ss_pred cHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 79999999999999887654 223333455554322 3467875 666666777777778888876544
No 242
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.33 E-value=1.2e+02 Score=28.39 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCceEeCCCCC-----CC---------------HHHHH-------hcCCCccEEEEeeeCCHHH--H
Q 026729 88 EGEYATARAASAAGTIMTLSSWST-----SS---------------VEEVA-------STGPGIRFFQLYVYKDRNV--V 138 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lSs~ss-----~s---------------le~ia-------~~~~~~~wfQlY~~~d~~~--~ 138 (234)
+.=.++.+||++.+.|.++..... .. ++.++ +...-|..+.| |... .
T Consensus 24 e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHL----DH~~~~~ 99 (340)
T cd00453 24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHT----DHCAKKL 99 (340)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEc----CCCCCCC
Confidence 444578899999999998865431 12 33332 12223445554 6665 5
Q ss_pred HHHHHHHHHcC-----------CcEEEEe
Q 026729 139 AQLVRRAERAG-----------FKAIALT 156 (234)
Q Consensus 139 ~~li~rA~~aG-----------~~AlvvT 156 (234)
.+.+++|-++| |+.+++.
T Consensus 100 ~e~i~~ai~~G~~~~~~~~~~~FsSVMiD 128 (340)
T cd00453 100 LPWIDGLLDAGEKHFAATGKPLFSSHMID 128 (340)
T ss_pred HHHHHHHHHcCCccccccCCCCceeEEec
Confidence 68888888888 8877654
No 243
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.27 E-value=62 Score=28.59 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC-------C-Cc---cEEEEeeeCCHHHHHHHHHHHH
Q 026729 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTG-------P-GI---RFFQLYVYKDRNVVAQLVRRAE 146 (234)
Q Consensus 90 E~a~AraA~~~gi~~~lSs~ss~sle~ia~~~-------~-~~---~wfQlY~~~d~~~~~~li~rA~ 146 (234)
...+-+.+++.|.|++|||.. .+++||..+. . .. +-.+-|+.+..+.+...|..-+
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~-stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~ 168 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGM-STLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLK 168 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCC-CCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHH
Confidence 457999999999999999977 6788876431 1 21 2345676666666666666554
No 244
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=26.26 E-value=1.3e+02 Score=24.69 Aligned_cols=64 Identities=13% Similarity=0.274 Sum_probs=39.2
Q ss_pred CCCCCHHHHHhc----C---C-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC-CCchhhHhhccCCCC
Q 026729 109 WSTSSVEEVAST----G---P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLP 176 (234)
Q Consensus 109 ~ss~sle~ia~~----~---~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv-~G~Re~d~r~~f~~p 176 (234)
+++.+++||.+. + + ...+|| ....+...+.|++|.. ++++||+.-=+-. .+..-+|-=..+..|
T Consensus 23 YG~~tl~~i~~~~~~~a~~~g~~v~~~Q---SN~EGelId~I~~a~~-~~dgiiINpga~THtSiAl~DAl~~~~~P 95 (146)
T PRK05395 23 YGSTTLADIEALLEEEAAELGVELEFFQ---SNHEGELIDRIHEARD-GADGIIINPGAYTHTSVALRDALAAVSIP 95 (146)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHhccc-CCcEEEECchHHHHHHHHHHHHHHcCCCC
Confidence 567888888532 1 1 345677 4666777788887754 6888888644432 444555554445444
No 245
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=26.22 E-value=28 Score=22.42 Aligned_cols=30 Identities=40% Similarity=0.453 Sum_probs=24.5
Q ss_pred HHhCChhhhhhhcCCC-----CchHHHHHHHHhhc
Q 026729 15 KEKLPKMVFDYYASGA-----EDQWTLQENRNAFS 44 (234)
Q Consensus 15 r~~Lp~~~~~Yi~gGa-----~de~t~~~N~~af~ 44 (234)
..+|+...|+-+-.|+ ..|.|.+.=+.||+
T Consensus 4 a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 4 AERLRSAGFATIGSGAGLPSSEEEETRQKLRRAFD 38 (41)
T ss_dssp HHHHHHTT-EEECTTS------HHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccCccccchhhHHHHHHHHHHHH
Confidence 4678889999999999 88999999999986
No 246
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=26.03 E-value=2.1e+02 Score=27.14 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCCceEeC---CCCCCCHHHHHhcCC----CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 88 EGEYATARAASAAGTIMTLS---SWSTSSVEEVASTGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 88 ~gE~a~AraA~~~gi~~~lS---s~ss~sle~ia~~~~----~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
+|..|+|.||..+|+-++.+ |-+|.=+|.+++..+ +-.|+|. .|.--..+.+-=|-.+|+++...|
T Consensus 14 ~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~---E~E~~A~~~~~GAs~aGaRa~TaT 86 (407)
T PRK09622 14 DGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMV---ESEHAAMSACVGAAAAGGRVATAT 86 (407)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEee---ccHHHHHHHHHHHHhhCcCEEeec
Confidence 79999999999999987765 223323355544322 2346774 576666777777888898886554
No 247
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=25.62 E-value=2.5e+02 Score=25.40 Aligned_cols=74 Identities=15% Similarity=0.007 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCC-----ceEeCCCCCCCHHHHHhcC--CCccEEEEeee--C-------------------CHHH-H
Q 026729 88 EGEYATARAASAAGT-----IMTLSSWSTSSVEEVASTG--PGIRFFQLYVY--K-------------------DRNV-V 138 (234)
Q Consensus 88 ~gE~a~AraA~~~gi-----~~~lSs~ss~sle~ia~~~--~~~~wfQlY~~--~-------------------d~~~-~ 138 (234)
+-+..+++...+.|. ..+++|+...+|+.+.+.. |...-.-++-. . +... .
T Consensus 150 ~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~ 229 (302)
T cd08571 150 LSVDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIW 229 (302)
T ss_pred cHHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHee
Confidence 345567777778775 6789999988888888766 42111101000 0 0000 1
Q ss_pred -----------HHHHHHHHHcCCcEEEEeeCCCC
Q 026729 139 -----------AQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 139 -----------~~li~rA~~aG~~AlvvTvD~pv 161 (234)
.+++++|.++|.+..+-||+.+.
T Consensus 230 ~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~ 263 (302)
T cd08571 230 PVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEF 263 (302)
T ss_pred ecCCCCcccCccHHHHHHHHcCCEEEEEEEecCc
Confidence 27789999999999999998754
No 248
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.38 E-value=3.5e+02 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEee
Q 026729 136 NVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvTv 157 (234)
-.+.++++.++++|.+..+.|+
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~ 231 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD 231 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC
Confidence 3467888888888998888883
No 249
>TIGR00035 asp_race aspartate racemase.
Probab=25.38 E-value=79 Score=27.15 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCC
Q 026729 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p 176 (234)
..+.+.+++.+++|+++||+...++..- ..+++..+.+|
T Consensus 62 ~~l~~~~~~L~~~g~d~iviaCNTah~~--~~~l~~~~~iP 100 (229)
T TIGR00035 62 PILIDIAVKLENAGADFIIMPCNTAHKF--AEDIQKAIGIP 100 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccHHHH--HHHHHHhCCCC
Confidence 3577888899999999999999987643 46788777665
No 250
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.24 E-value=2.7e+02 Score=25.13 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHH----hhhcC
Q 026729 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY----VAGQI 208 (234)
Q Consensus 133 ~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 208 (234)
.|-+.+.++++...++|+++|=|.+= |+-|. . .+..+... +..-.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvP--------------fSDPv---------------A--DGP~Iq~A~~rAL~~g~ 76 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVP--------------FSDPV---------------A--DGPTIQAAHLRALAAGV 76 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCC--------------CCCcC---------------c--cCHHHHHHHHHHHHCCC
Confidence 46678899999999999999766441 22221 0 11122221 22222
Q ss_pred CCCCChHHHHHHHHh-CCCcccccccC
Q 026729 209 DRSLSWKNILCLYQD-FSFECDVMLYE 234 (234)
Q Consensus 209 ~~~~tW~di~wlr~~-w~l~~~~~~~~ 234 (234)
+..-+++-++.+|+. .+.|+++|.|.
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~ 103 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYY 103 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 233356678888844 89999999984
No 251
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=25.13 E-value=4.6e+02 Score=23.74 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=47.2
Q ss_pred eEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCC-------HHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHH
Q 026729 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-------VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAE 146 (234)
Q Consensus 74 i~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~s-------le~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~ 146 (234)
|.+.|-....-++..-..++-++|+++|+-..+...+..+ ++++.+....-..+ .+.|.......+++|.
T Consensus 26 i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv---~~~d~~al~~~l~~a~ 102 (336)
T PRK15408 26 IAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIV---SAVSPDGLCPALKRAM 102 (336)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEE---ecCCHHHHHHHHHHHH
Confidence 4444433332234455667889999999888872222222 22333332221222 2557777789999999
Q ss_pred HcCCcEEEEeeC
Q 026729 147 RAGFKAIALTVD 158 (234)
Q Consensus 147 ~aG~~AlvvTvD 158 (234)
++|...+.+.-|
T Consensus 103 ~~gIpVV~~d~~ 114 (336)
T PRK15408 103 QRGVKVLTWDSD 114 (336)
T ss_pred HCCCeEEEeCCC
Confidence 999776555544
No 252
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.04 E-value=2.5e+02 Score=24.59 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHH-HHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEE-eeCCC
Q 026729 91 YAT-ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL-TVDTP 160 (234)
Q Consensus 91 ~a~-AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alvv-TvD~p 160 (234)
.++ +..+.+.|+|++..+.++..+.+ ....+.+|+... .+......+.+.+++.|.+.+++ +.|.+
T Consensus 81 ~a~~~~~~~~~~vp~i~~~~~~~~l~~---~~~~~~~fr~~~-~~~~~~~~l~~~~~~~~~~~vail~~~~~ 148 (312)
T cd06346 81 IAALTSVAVPNGVVMISPSSTSPTLTT---LDDNGLFFRTAP-SDALQGQALAQLAAERGYKSVATTYINND 148 (312)
T ss_pred HhhhhhhhccCCcEEEecCCCCcccee---cCCCceEEEecC-CcHHHHHHHHHHHHHcCCCeEEEEEccCc
Confidence 455 67888899999976655544432 122345777643 45555666777777777665554 44444
No 253
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.02 E-value=2.6e+02 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.5
Q ss_pred cEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 125 ~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
.-+=+-..+.-..+.+.+++|++.|++.|++|=+.
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 33434445566678899999999999999999753
No 254
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=24.86 E-value=79 Score=28.31 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=28.6
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
+..-||+|+ ++.+..+.+++.|..|||.. .|-||-|-.
T Consensus 154 ~raV~QfYp-en~~q~d~i~~~a~~aGF~G-GlvVd~Pes 191 (270)
T KOG1541|consen 154 ARAVLQFYP-ENEAQIDMIMQQAMKAGFGG-GLVVDWPES 191 (270)
T ss_pred ceeEEEecc-cchHHHHHHHHHHHhhccCC-ceeeecccc
Confidence 345799995 67777788889999999865 455787754
No 255
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=24.75 E-value=1.6e+02 Score=24.42 Aligned_cols=33 Identities=24% Similarity=0.628 Sum_probs=27.5
Q ss_pred cEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 125 ~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
..+++|. +|.+.+..|-+.|+..||.-+-.-.|
T Consensus 111 ~yv~Iyc-Kd~~~i~~lyqna~~~gy~~i~yITd 143 (153)
T PF10903_consen 111 SYVSIYC-KDQEIIESLYQNAQNQGYENIEYITD 143 (153)
T ss_pred cEEEEEE-cCHHHHHHHHHHHHHCCceEEEEEec
Confidence 5889985 99999999999999999995554444
No 256
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=24.67 E-value=1.8e+02 Score=24.42 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCC--ceEeCCCCCCCHHHHHhcCCCccEE---------------EEeeeCCHHHHHHHHHHHHHcCCcEE
Q 026729 91 YATARAASAAGT--IMTLSSWSTSSVEEVASTGPGIRFF---------------QLYVYKDRNVVAQLVRRAERAGFKAI 153 (234)
Q Consensus 91 ~a~AraA~~~gi--~~~lSs~ss~sle~ia~~~~~~~wf---------------QlY~~~d~~~~~~li~rA~~aG~~Al 153 (234)
..+++.-.+.|. ..+++|+....+..+.+..|..... ..|-..-...+.+++++++++|.+..
T Consensus 115 ~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~ 194 (220)
T cd08579 115 EKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGKKVY 194 (220)
T ss_pred HHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCCEEE
Confidence 345555555543 4567777777777776544422110 11111122345789999999999999
Q ss_pred EEeeCCC
Q 026729 154 ALTVDTP 160 (234)
Q Consensus 154 vvTvD~p 160 (234)
+-|||.+
T Consensus 195 ~wtvn~~ 201 (220)
T cd08579 195 VWTVNDP 201 (220)
T ss_pred EEcCCCH
Confidence 9999865
No 257
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=24.58 E-value=84 Score=21.36 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=25.8
Q ss_pred HHHHHH-HHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCC-HHHHHHHHHHH
Q 026729 90 EYATAR-AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-RNVVAQLVRRA 145 (234)
Q Consensus 90 E~a~Ar-aA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d-~~~~~~li~rA 145 (234)
|..+.+ .-.+.||++.+-+....++ +-..+...|.+||++.+ .+..+++|+..
T Consensus 11 ea~~i~~~L~~~gI~~~v~~~~~~~~---~g~~g~~~~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 11 EAELIKGLLEENGIPAFVKNEHMSGY---AGEPGTGGQVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp HHHHHHHHHHHTT--EE--S----SS------S--SSSEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcEEEECCccchh---hcccCccCceEEEECHHHHHHHHHHHHHh
Confidence 444443 4466899999987665555 21134445699999864 35667777653
No 258
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.44 E-value=1.8e+02 Score=24.96 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCcEEEEeeCCCC
Q 026729 140 QLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 140 ~li~rA~~aG~~AlvvTvD~pv 161 (234)
+.+++++++|.+..+.|||.+.
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~ 211 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPA 211 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHH
Confidence 3467788889999999988763
No 259
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.43 E-value=4e+02 Score=24.43 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcC-CcEEEEe
Q 026729 135 RNVVAQLVRRAERAG-FKAIALT 156 (234)
Q Consensus 135 ~~~~~~li~rA~~aG-~~AlvvT 156 (234)
.+.+.+++++.+++| ++.|-|+
T Consensus 227 ~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 227 PDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeC
Confidence 355678888889998 6776664
No 260
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.40 E-value=2.8e+02 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=13.4
Q ss_pred HHHHHHHhcCC-ceEeCCCCCCCHHHH
Q 026729 92 ATARAASAAGT-IMTLSSWSTSSVEEV 117 (234)
Q Consensus 92 a~AraA~~~gi-~~~lSs~ss~sle~i 117 (234)
.++++|.+.+. ..++|+..+++++.+
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~~~~ 67 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGEIDC 67 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCHHHH
Confidence 34555555555 344555555554443
No 261
>PRK10864 putative methyltransferase; Provisional
Probab=24.33 E-value=1.6e+02 Score=27.50 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=40.5
Q ss_pred cCCceEeCCCCCCCHHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 100 AGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 100 ~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
-||...+......+++++.+..+ ...++=|.-..|+.-+-.+++-|+..|+++|+++
T Consensus 173 qGV~A~v~~~~~~~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~ 230 (346)
T PRK10864 173 GGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQ 230 (346)
T ss_pred CeEEEEEeCCCCCCHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEC
Confidence 46666666555567777654322 2345555556788888899999999999999996
No 262
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.33 E-value=2.1e+02 Score=24.47 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
...+++++++++|.+..+.|||.+
T Consensus 219 ~~~~~i~~~~~~G~~v~vwtvn~~ 242 (263)
T cd08567 219 VTKELVDEAHALGLKVVPWTVNDP 242 (263)
T ss_pred cCHHHHHHHHHCCCEEEEecCCCH
Confidence 346788888888988888888754
No 263
>PRK11633 cell division protein DedD; Provisional
Probab=24.18 E-value=1.7e+02 Score=25.79 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.9
Q ss_pred ccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 124 ~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.++.||=-++|.+...+|..+...+||+|-+..+++.
T Consensus 149 ~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~ 185 (226)
T PRK11633 149 AYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPV 185 (226)
T ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecC
Confidence 3569999999999999999999999999999887644
No 264
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.10 E-value=1e+02 Score=23.16 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=25.8
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 126 wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
.+=+-..+.-..+.+.++.|++.|++.|.+|=+
T Consensus 50 ~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 50 VIAISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 343444566667889999999999999999975
No 265
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=24.09 E-value=2.9e+02 Score=23.28 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEe--eeCCHH----HHHHHHHHHHHcCCcEEEEe
Q 026729 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLY--VYKDRN----VVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY--~~~d~~----~~~~li~rA~~aG~~AlvvT 156 (234)
..+|+++.+.|+.. +|-.+..-++.|.+.. +...+=+| -..+.+ ...+.++.|.++|++.|++.
T Consensus 30 ~~~a~~~~~~G~~~-~~~~~~~~~~~i~~~~-~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 30 AAMALAAVQGGAVG-IRANGVEDIRAIRARV-DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHCCCeE-EEcCCHHHHHHHHHhC-CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEe
Confidence 57999999999976 4422222334444432 22221111 111101 12457899999999965553
No 266
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=24.05 E-value=2.2e+02 Score=24.99 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=38.5
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCCCcccCcccHHHHhhhcCCCC
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (234)
..|.....+.+++.+++|++- +++|.= -..| .| +-+
T Consensus 12 saD~~~l~~el~~~~~agad~--iH~DVM---------DghF-VP--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADL--IHIDVM---------DGHF-VP--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCE--EEEecc---------CCCc-CC--------------------------------Ccc
Confidence 356777888999999999875 455531 2223 11 012
Q ss_pred CChHHHHHHHHhCCCcccccc
Q 026729 212 LSWKNILCLYQDFSFECDVML 232 (234)
Q Consensus 212 ~tW~di~wlr~~w~l~~~~~~ 232 (234)
+.-+-+++||+.+.+|+||-|
T Consensus 48 fGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEE
Confidence 344679999999999999865
No 267
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=24.04 E-value=1.3e+02 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
.-|.|..|-+ |-....++.+.++++|+++|+++
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe
Confidence 3578999853 44447789999999999999854
No 268
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.03 E-value=2e+02 Score=25.79 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHhcCC-CccEEEEeeeCCHHHHHHHHHHHHHc-CCcEEEEeeCCCCCCchhhHhhccCCCCCcCccccccccccCC
Q 026729 114 VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (234)
Q Consensus 114 le~ia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~a-G~~AlvvTvD~pv~G~Re~d~r~~f~~p~~~~~~~~~~~~~~~ 191 (234)
.+.+.+... |...|++.+..+.+...++++...++ | .+-|.+|. ..|+...+.+.-...-....+.-++++
T Consensus 139 ~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~~g--~~~l~vD~-n~~~~~~~A~~~~~~l~~~~l~~iEeP---- 211 (316)
T cd03319 139 AAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREAAP--DARLRVDA-NQGWTPEEAVELLRELAELGVELIEQP---- 211 (316)
T ss_pred HHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHhCC--CCeEEEeC-CCCcCHHHHHHHHHHHHhcCCCEEECC----
Q ss_pred CcccCcccHHHHhhhcCCCCCChHHHHHHHHhCCCcc
Q 026729 192 MDEANDSGLAAYVAGQIDRSLSWKNILCLYQDFSFEC 228 (234)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~l~~ 228 (234)
-+.-+|+.+++|++.++.||
T Consensus 212 -----------------~~~~d~~~~~~L~~~~~ipI 231 (316)
T cd03319 212 -----------------VPAGDDDGLAYLRDKSPLPI 231 (316)
T ss_pred -----------------CCCCCHHHHHHHHhcCCCCE
No 269
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.95 E-value=2.2e+02 Score=25.04 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=25.1
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alvv 155 (234)
-|.+..+-+..+...+.++.++++++|+++|.|
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE
Confidence 466777765445456779999999999999955
No 270
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=23.91 E-value=1e+02 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 135 RNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 135 ~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
.....+.+++|++-++++|+|-+|+|-
T Consensus 15 ~~~l~~~l~~a~~~~~~~vvl~InSpG 41 (187)
T cd07020 15 ADYLERAIDQAEEGGADALIIELDTPG 41 (187)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 456678888888888999999999996
No 271
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=23.55 E-value=76 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=21.6
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC
Q 026729 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (234)
Q Consensus 131 ~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv 161 (234)
...+.+...+++++++++||+..++-|.++.
T Consensus 101 tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~ 131 (199)
T PF06414_consen 101 TLSNPSKLRKLIREAKAAGYKVELYYVAVPP 131 (199)
T ss_dssp -TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred CCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence 3456777888999999999999998888863
No 272
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=23.50 E-value=1.4e+02 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 026729 136 NVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 136 ~~~~~li~rA~~aG~~AlvvT 156 (234)
+...+|-++|.+.|++...||
T Consensus 19 d~~~~la~kAd~~GA~~y~I~ 39 (56)
T PF07338_consen 19 DAEEALAKKADEKGAKYYRIT 39 (56)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 456788899999999988776
No 273
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.37 E-value=2.7e+02 Score=24.69 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=24.4
Q ss_pred cEEEEee---eCCHHHHHHHHHHHHHcCCcEEEEe
Q 026729 125 RFFQLYV---YKDRNVVAQLVRRAERAGFKAIALT 156 (234)
Q Consensus 125 ~wfQlY~---~~d~~~~~~li~rA~~aG~~AlvvT 156 (234)
..|=.|+ ..|.+.+.++++...+.|++.|=|.
T Consensus 12 ~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElG 46 (258)
T PRK13111 12 KALIPYITAGDPDLETSLEIIKALVEAGADIIELG 46 (258)
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 3566666 3577888999999999999886554
No 274
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.33 E-value=2.7e+02 Score=24.23 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHHHhcCCceEeCCCCCCCHHHHHhcCC-CccEEEEee--eCCHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 93 TARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYV--YKDRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~sle~ia~~~~-~~~wfQlY~--~~d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
+.+.+++.++|++++ .+-.|+|++.+... +....++=. ..|.+..+++.++ -|-+.+++.+|.
T Consensus 66 i~~i~~~~~~pv~~~-GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~---~~~~~iv~slD~ 131 (254)
T TIGR00735 66 VERTAETVFIPLTVG-GGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADR---FGSQCIVVAIDA 131 (254)
T ss_pred HHHHHHhcCCCEEEE-CCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHH---cCCCCEEEEEEe
Confidence 345555667777775 34567777764321 223344321 1344444443333 255678888885
No 275
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.16 E-value=86 Score=29.05 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCceEeCCCCCCCHHHHHhc
Q 026729 90 EYATARAASAAGTIMTLSSWSTSSVEEVAST 120 (234)
Q Consensus 90 E~a~AraA~~~gi~~~lSs~ss~sle~ia~~ 120 (234)
+..+.+.+++.|-|+++||..+ +++||..+
T Consensus 122 n~pLL~~~A~~gkPvilStGma-tl~Ei~~A 151 (329)
T TIGR03569 122 NAPLLKKIARFGKPVILSTGMA-TLEEIEAA 151 (329)
T ss_pred CHHHHHHHHhcCCcEEEECCCC-CHHHHHHH
No 276
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.16 E-value=52 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=14.2
Q ss_pred CCccEEEEeeeCCHHHHHHHHHHHHHcCC
Q 026729 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGF 150 (234)
Q Consensus 122 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~ 150 (234)
....|+|+-... .+..++++++|.
T Consensus 98 ~kv~W~QlGi~n-----~ea~~~~~~aG~ 121 (140)
T COG1832 98 AKVVWLQLGIRN-----EEAAEKARDAGL 121 (140)
T ss_pred CCeEEEecCcCC-----HHHHHHHHHhCc
Confidence 345688876532 334566667775
No 277
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.14 E-value=1.4e+02 Score=22.73 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=28.8
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCC
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~ 159 (234)
+...+=+-..+.-..+.+.++.|++.|++.|.+|=..
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 3455555556777788999999999999999999653
No 278
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.06 E-value=5.1e+02 Score=24.91 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=54.5
Q ss_pred eecCcccCcceEecccccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHh-------c-C-CCccEEEEeeeC-
Q 026729 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS-------T-G-PGIRFFQLYVYK- 133 (234)
Q Consensus 64 tl~G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~-------~-~-~~~~wfQlY~~~- 133 (234)
++||. ..||+-+||+. +.. ...++.|..++|..=++++.+ .++|+|.+ . . +.|.=+.|....
T Consensus 8 ~~lgi--ryPii~gpMa~-Gis----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMAR-GIA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccC-CCC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 44544 67999999972 222 346888889999887887654 46666542 2 2 235446665533
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 026729 134 DRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 134 d~~~~~~li~rA~~aG~~Alvv 155 (234)
+.....++++-..+.|++.+..
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~ 101 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEA 101 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEe
Confidence 4444567888888999976554
No 279
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=23.01 E-value=4.6e+02 Score=22.04 Aligned_cols=76 Identities=8% Similarity=0.038 Sum_probs=45.0
Q ss_pred cccccccCchhHHHHHHHHHhcCCceEeCCCCCCC--HHHHHhcCC--CccEEEEeeeC----------CHHHHHHHHHH
Q 026729 79 TAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS--VEEVASTGP--GIRFFQLYVYK----------DRNVVAQLVRR 144 (234)
Q Consensus 79 ~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~s--le~ia~~~~--~~~wfQlY~~~----------d~~~~~~li~r 144 (234)
+|+--+.|++-...+.+.+++.|+...+.|.++.. -+.+.+... +..++.+.-.. +-+.+.+.++.
T Consensus 72 ~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~~~~~v~~~i~~ 151 (235)
T TIGR02493 72 SGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGVSLQPTLDFAKY 151 (235)
T ss_pred eCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 45555778877778999999999988888888543 233322111 11222222111 22345667778
Q ss_pred HHHcCCcEEE
Q 026729 145 AERAGFKAIA 154 (234)
Q Consensus 145 A~~aG~~Alv 154 (234)
+++.|....+
T Consensus 152 l~~~g~~~~v 161 (235)
T TIGR02493 152 LAKRNKPIWI 161 (235)
T ss_pred HHhCCCcEEE
Confidence 8888887533
No 280
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.98 E-value=96 Score=27.54 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.8
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeC
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIALTVD 158 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~AlvvTvD 158 (234)
+++.+.+.+|++.|.++|...||.|--
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeeccc
Confidence 367888999999999999999999854
No 281
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.91 E-value=3.1e+02 Score=26.12 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=48.0
Q ss_pred cCcceEecccccccccCchhHH--HHHHHHHhcCCceEeCCCCCCCHHHHHhc---CCCccEEEEeeeCCHHHHHHHHHH
Q 026729 70 ISMPIMIAPTAMQKMAHPEGEY--ATARAASAAGTIMTLSSWSTSSVEEVAST---GPGIRFFQLYVYKDRNVVAQLVRR 144 (234)
Q Consensus 70 ~~~Pi~iaP~g~~~l~~p~gE~--a~AraA~~~gi~~~lSs~ss~sle~ia~~---~~~~~wfQlY~~~d~~~~~~li~r 144 (234)
...|+++.-+ |.|. +.+++|+..+-...-.+ .-..+++++. .+.+.-.+ -+.|-+..++|.+.
T Consensus 97 ~~~PLIL~~~--------D~evl~aale~~~~~kpLL~aAt--~eNyk~m~~lA~~y~~pl~v~--sp~Dln~lk~Ln~~ 164 (386)
T PF03599_consen 97 VDVPLILCGC--------DPEVLKAALEACAGKKPLLYAAT--EENYKAMAALAKEYGHPLIVS--SPIDLNLLKQLNIK 164 (386)
T ss_dssp -SSEEEEESS--------HHHHHHHHHHHTTTS--EEEEEB--TTTHHHHHHHHHHCT-EEEEE---SSCHHHHHHHHHH
T ss_pred cCCCEEEEeC--------CHHHHHHHHHHhCcCCcEEeEcC--HHHHHHHHHHHHHcCCeEEEE--ecccHHHHHHHHHH
Confidence 5678877544 4443 44444444444333333 3367777643 33333332 35788999999999
Q ss_pred HHHcCCcEEEEeeCCCCCCch
Q 026729 145 AERAGFKAIALTVDTPRLGRR 165 (234)
Q Consensus 145 A~~aG~~AlvvTvD~pv~G~R 165 (234)
..++|++-||+..=+..+|.-
T Consensus 165 l~~~Gv~dIVlDpgt~~lGyG 185 (386)
T PF03599_consen 165 LTELGVKDIVLDPGTRALGYG 185 (386)
T ss_dssp HHTTT-GGEEEE---SSTTTT
T ss_pred HHhcCcccEEecCCcccchhH
Confidence 999999999998877766654
No 282
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=22.71 E-value=3.4e+02 Score=27.79 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCceEeCCC------------------CCCCHHHHHhc-----CC-CccEEEE---eee-CCHH----HH
Q 026729 91 YATARAASAAGTIMTLSSW------------------STSSVEEVAST-----GP-GIRFFQL---YVY-KDRN----VV 138 (234)
Q Consensus 91 ~a~AraA~~~gi~~~lSs~------------------ss~sle~ia~~-----~~-~~~wfQl---Y~~-~d~~----~~ 138 (234)
..+.+.++++|..+++++. ...++++++.. .+ ..+.+++ |+. .|+. ..
T Consensus 257 ~~~~~iakeaGY~~afT~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~v~~~~~~~~~r~~h~dld~vyd~dp~qq~~~L 336 (671)
T PRK14582 257 GIALEELKKLGYDMAFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRVMHIDLDYVYDENPQQQDRNI 336 (671)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCCCcCccceEEecCCCCHHHHHHHHhcccCCCCEEEEEeccccccCCCHHHHHHHH
Confidence 3577788889998888742 13566777632 12 3478888 444 4553 44
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 026729 139 AQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 139 ~~li~rA~~aG~~AlvvTv 157 (234)
..+|+|.++.|..++++-+
T Consensus 337 ~~lLdrlk~~G~ntV~lqa 355 (671)
T PRK14582 337 DVLIQRVKDMQISTVYLQA 355 (671)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 6889999999999999999
No 283
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=22.57 E-value=2.6e+02 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
.+.++++++++.|.+-.+.|||.+
T Consensus 192 ~~~~~v~~~~~~gl~v~~wTvn~~ 215 (234)
T cd08570 192 FGQAFLPELKKNGKKVFVWTVNTE 215 (234)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 468999999999999999999976
No 284
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=22.42 E-value=2.8e+02 Score=23.31 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=28.8
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEe-eCCCC-CCchh
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIALT-VDTPR-LGRRE 166 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~AlvvT-vD~pv-~G~Re 166 (234)
..+.+...++++++.+.|...||+- .|++. .|+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~g~EGiv~K~~~s~Y~~g~Rs 198 (207)
T cd07901 162 TDDPEEAEEFFEEALEAGHEGVMVKSLDSPYQAGRRG 198 (207)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCCC
Confidence 4577888999999999999999997 78886 45554
No 285
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.37 E-value=3.2e+02 Score=21.95 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=37.2
Q ss_pred cCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC--CccEE--EEeeeCCHHHHHHHHHHHHHcCCcEE
Q 026729 85 AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFF--QLYVYKDRNVVAQLVRRAERAGFKAI 153 (234)
Q Consensus 85 ~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~--~~~wf--QlY~~~d~~~~~~li~rA~~aG~~Al 153 (234)
.|--|=.-++...+.+|.-.+-- ....|.|++.+++- ++... =-..-......++++++.++.|...+
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 35555556677777777655432 33467777764321 22221 11123444556778888888876443
No 286
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=22.20 E-value=2.5e+02 Score=25.49 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=40.0
Q ss_pred HHHHHHHhc--CCceEeCCCCCCCHH-------HHHhcCCCccEEEEee-----eCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 92 ATARAASAA--GTIMTLSSWSTSSVE-------EVASTGPGIRFFQLYV-----YKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 92 a~AraA~~~--gi~~~lSs~ss~sle-------~ia~~~~~~~wfQlY~-----~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
.+++.+++. .+..++|+...+... .+.....+..|.|+|- ..|+++...+.+.++++|+.+..++.
T Consensus 41 ~~~~~i~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~~~~~~ 120 (294)
T cd07372 41 RARESIEALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVTKMMRN 120 (294)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCeeeccC
Confidence 455555554 778888877433221 1111112222444533 46999999999999999998875433
No 287
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.11 E-value=92 Score=27.17 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=51.0
Q ss_pred cCchh---HHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCC---CccEEEEee-eCCHHHHHHHHHHHH--HcCCcEEEE
Q 026729 85 AHPEG---EYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYV-YKDRNVVAQLVRRAE--RAGFKAIAL 155 (234)
Q Consensus 85 ~~p~g---E~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~---~~~wfQlY~-~~d~~~~~~li~rA~--~aG~~Alvv 155 (234)
+|.+. -..+++-.++.|....++----+++|++....+ -...+-+-+ .+-..+..+++.+.+ +..|..+.+
T Consensus 93 fH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~i 172 (224)
T KOG3111|consen 93 FHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDI 172 (224)
T ss_pred EEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceE
Confidence 46554 257899999999999999888899999875432 112222211 244556677777765 345777777
Q ss_pred eeCCCC
Q 026729 156 TVDTPR 161 (234)
Q Consensus 156 TvD~pv 161 (234)
-||.-+
T Consensus 173 evDGGv 178 (224)
T KOG3111|consen 173 EVDGGV 178 (224)
T ss_pred EecCCc
Confidence 777654
No 288
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.95 E-value=1.9e+02 Score=24.76 Aligned_cols=56 Identities=18% Similarity=0.068 Sum_probs=35.5
Q ss_pred HHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 026729 93 TARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 93 ~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alvv 155 (234)
-++.|.++|.-|++|...+..+.+.+...+-+... . ..+.+-+.+|.++|++-|.+
T Consensus 75 ~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~-----G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 75 QVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMP-----G--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEc-----c--cCCHHHHHHHHHcCCCEEEE
Confidence 56778888888888877666665555433322122 2 23345567888888888876
No 289
>PRK09248 putative hydrolase; Validated
Probab=21.37 E-value=88 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
...+++++|.+.|+++|++|=-.|
T Consensus 20 ~~~e~v~~A~~~G~~~i~iTdH~~ 43 (246)
T PRK09248 20 TLHENAAEAKQKGLKLFAITDHGP 43 (246)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCC
Confidence 578999999999999999995444
No 290
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.17 E-value=2.2e+02 Score=23.22 Aligned_cols=64 Identities=14% Similarity=0.286 Sum_probs=38.9
Q ss_pred CCCCCHHHHHhc----C---C-CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCC-CCchhhHhhccCCCC
Q 026729 109 WSTSSVEEVAST----G---P-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLP 176 (234)
Q Consensus 109 ~ss~sle~ia~~----~---~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv-~G~Re~d~r~~f~~p 176 (234)
+++.+++||.+. + + ...+|| ....+...+.|++|.. ++++||+.-=+-. .+..-+|-=..+..|
T Consensus 21 YG~~tl~~i~~~l~~~a~~~g~~v~~~Q---SN~Egelid~I~~a~~-~~dgiIINpga~THtSvAi~DAl~~~~~P 93 (140)
T cd00466 21 YGTTTLADIEALLRELAAELGVEVEFFQ---SNHEGELIDWIHEARD-GADGIIINPGAYTHTSIALRDALAAVSIP 93 (140)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHHhhc-cCcEEEEcchHHHHHHHHHHHHHHcCCCC
Confidence 567788888532 1 1 345677 4666777888888854 6888888644332 444455544445444
No 291
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=21.10 E-value=2.7e+02 Score=24.33 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhcC-CCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 026729 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIA 154 (234)
Q Consensus 87 p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~Alv 154 (234)
|++--+....+....-..+++.+.+.+-+.+.... ++..|-=+|...|.+-.+..++-+++.|+.+|-
T Consensus 109 ~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld 177 (211)
T COG2085 109 PSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLD 177 (211)
T ss_pred CCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceee
Confidence 44444555555666666888889888888777432 234566666666666667777888899998853
No 292
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=21.10 E-value=5.4e+02 Score=22.18 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCceEeCCCCCCCHHHHHhcCCCccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCCCch-hhH
Q 026729 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR-EAD 168 (234)
Q Consensus 90 E~a~AraA~~~gi~~~lSs~ss~sle~ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~G~R-e~d 168 (234)
..+++..+.+.|+|++..+.++..+.+ ....+..|++-. .+......+++.+.+.|.+.+++-.+....|+. ...
T Consensus 78 ~~~~~~~~~~~~ip~v~~~~~~~~~~~---~~~~~~~f~~~~-~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~ 153 (333)
T cd06332 78 ALAVVPSLTESGTFLISPNAGPSDLAG---KLCSPNFFRTSW-QNDQVHEAMGKYAADKGYKKVVIIAPDYAAGKDAVAG 153 (333)
T ss_pred HHHHHHHHhhcCCeEEecCCCCccccc---cCCCCcEEEeeC-ChHHhHHHHHHHHHHhCCceEEEEecCcchhHHHHHH
Confidence 346677888899999876544443321 111345677643 566677888888888898766654443334432 334
Q ss_pred hhccC
Q 026729 169 IKNRF 173 (234)
Q Consensus 169 ~r~~f 173 (234)
.+..+
T Consensus 154 ~~~~~ 158 (333)
T cd06332 154 FKRTF 158 (333)
T ss_pred HHHhh
Confidence 44444
No 293
>PLN02826 dihydroorotate dehydrogenase
Probab=20.92 E-value=1.9e+02 Score=27.59 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=28.5
Q ss_pred CccEEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 026729 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (234)
Q Consensus 123 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~AlvvTv 157 (234)
-|.+..|-+.-+.+...++++.|+++|+++|+++=
T Consensus 263 ~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 263 PPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISN 297 (409)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 46788886555556788999999999999999973
No 294
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=20.85 E-value=5.4e+02 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCceEeCCCCCC
Q 026729 90 EYATARAASAAGTIMTLSSWSTS 112 (234)
Q Consensus 90 E~a~AraA~~~gi~~~lSs~ss~ 112 (234)
=++++..+++.++|++.++.++.
T Consensus 72 ~~Av~~~a~~~~vp~i~~~a~~~ 94 (347)
T TIGR03863 72 LLALADAAKAKGALLFNAGAPDD 94 (347)
T ss_pred HHHHHHHHHhCCcEEEeCCCCCh
Confidence 45677888899999998755443
No 295
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=20.80 E-value=1.7e+02 Score=27.54 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHhcCCceEeCC
Q 026729 86 HPEGEYATARAASAAGTIMTLSS 108 (234)
Q Consensus 86 ~p~gE~a~AraA~~~gi~~~lSs 108 (234)
+.+-=.++.+||++.+.|.||..
T Consensus 36 n~e~~~Avi~AAEe~~sPvIlq~ 58 (357)
T TIGR01520 36 SSSTINAALEAAADVKSPIIIQF 58 (357)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc
Confidence 33445688999999999999865
No 296
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=20.75 E-value=1.3e+02 Score=26.79 Aligned_cols=32 Identities=31% Similarity=0.245 Sum_probs=27.6
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 026729 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (234)
Q Consensus 131 ~~~d~~~~~~li~rA~~aG~~AlvvTvD~pv~ 162 (234)
++-+|+...+++++..++|+++|++.+.-.-.
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~ 90 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEP 90 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCC
Confidence 45688899999999999999999999977654
No 297
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=20.73 E-value=3.8e+02 Score=25.64 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=56.5
Q ss_pred CcccCcceEecccccccccCchhHHHHHHHHHh-c-CCceEeCCCCCC-CHHHHHhcC---CCccEEEEeeeCCHHHHHH
Q 026729 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASA-A-GTIMTLSSWSTS-SVEEVASTG---PGIRFFQLYVYKDRNVVAQ 140 (234)
Q Consensus 67 G~~~~~Pi~iaP~g~~~l~~p~gE~a~AraA~~-~-gi~~~lSs~ss~-sle~ia~~~---~~~~wfQlY~~~d~~~~~~ 140 (234)
-+....|++|.-+| +|+-|..+.++|.+ + |=.-+|.+.+-- .++++++.+ +.+.-.+ -+.|.+..+.
T Consensus 184 ~~av~vPLIL~gsg-----~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~--s~~Din~ak~ 256 (389)
T TIGR00381 184 LQAVDVPIVIGGSG-----NPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGHVVLSW--TIMDINMQKT 256 (389)
T ss_pred HHhCCCCEEEeCCC-----CCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCCeEEEE--cCCcHHHHHH
Confidence 45678899887776 55555554444433 2 323444444434 566776532 2222222 2467788889
Q ss_pred HHHHHHHcCCc--EEEEeeCCCCCCch
Q 026729 141 LVRRAERAGFK--AIALTVDTPRLGRR 165 (234)
Q Consensus 141 li~rA~~aG~~--AlvvTvD~pv~G~R 165 (234)
+-+++.+.|++ -||+..-+-..|.-
T Consensus 257 Ln~kL~~~Gv~~eDIVlDP~t~alG~G 283 (389)
T TIGR00381 257 LNRYLLKRGLMPRDIVMDPTTCALGYG 283 (389)
T ss_pred HHHHHHHcCCCHHHEEEcCCCccccCC
Confidence 99999999999 99988777655543
No 298
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.54 E-value=1.5e+02 Score=27.90 Aligned_cols=20 Identities=30% Similarity=0.207 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCcEEEEeeCC
Q 026729 140 QLVRRAERAGFKAIALTVDT 159 (234)
Q Consensus 140 ~li~rA~~aG~~AlvvTvD~ 159 (234)
.-++.|-+.|+.|+.+||..
T Consensus 150 ~sVedAlrLGAdAV~~tvy~ 169 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYF 169 (348)
T ss_pred ecHHHHHHCCCCEEEEEEec
Confidence 33788999999999999974
No 299
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.51 E-value=1.8e+02 Score=27.06 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=57.2
Q ss_pred cccCcceEecccccccccCchhHHH-HHHHHHh-cCCceEeCCCC-CCCHHHHHhcCC--C---ccEEEEeeeCCHHHHH
Q 026729 68 FKISMPIMIAPTAMQKMAHPEGEYA-TARAASA-AGTIMTLSSWS-TSSVEEVASTGP--G---IRFFQLYVYKDRNVVA 139 (234)
Q Consensus 68 ~~~~~Pi~iaP~g~~~l~~p~gE~a-~AraA~~-~gi~~~lSs~s-s~sle~ia~~~~--~---~~wfQlY~~~d~~~~~ 139 (234)
|-+..||.|.-.| +|+-+.. +.+||.- .|=...|+|.+ ....|.|++++- + ..|-|+=+.--+.+++
T Consensus 196 qAVdvPiiiGGSG-----npeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~N~qk~LNr 270 (403)
T COG2069 196 QAVDVPIIIGGSG-----NPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYDHVVLSWTQMDVNMQKTLNR 270 (403)
T ss_pred HhcCcCEEecCCC-----CCccCHHHHHHHHHhhcCceEEeeccccccCHHHHHHHHHhcCceEEEeeccChHHHHHHHH
Confidence 5678899886544 6766654 4444443 47777777665 567789986532 2 3699986666666777
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCch
Q 026729 140 QLVRRAERAGFKAIALTVDTPRLGRR 165 (234)
Q Consensus 140 ~li~rA~~aG~~AlvvTvD~pv~G~R 165 (234)
.+++|. .--.-||..=-+..+|+-
T Consensus 271 kllk~g--l~r~~IVMDPTTcALGYG 294 (403)
T COG2069 271 KLLKRG--LPRDRIVMDPTTCALGYG 294 (403)
T ss_pred HHHHcc--CChhheeeccchhhhccc
Confidence 777765 334456665555555543
No 300
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.44 E-value=2.3e+02 Score=25.81 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=45.9
Q ss_pred cccccccCchhHHHHHHHHHhcCCceEeCCCCCCCHHHHHhc-CC-CccEEEEeeeCC--------------HHHHHHHH
Q 026729 79 TAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKD--------------RNVVAQLV 142 (234)
Q Consensus 79 ~g~~~l~~p~gE~a~AraA~~~gi~~~lSs~ss~sle~ia~~-~~-~~~wfQlY~~~d--------------~~~~~~li 142 (234)
+|+--+.||+-. .+.+.+.+.|+...+.|.++.=-++.++. .. +...+|+-+..- -+.+.+.+
T Consensus 60 ~GGEPll~~~~~-~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i 138 (358)
T TIGR02109 60 SGGEPLARPDLV-ELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMA 138 (358)
T ss_pred eCccccccccHH-HHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHH
Confidence 455557788643 56778888898877777664211333321 11 344667665431 12334556
Q ss_pred HHHHHcCCcEEEEeeCC
Q 026729 143 RRAERAGFKAIALTVDT 159 (234)
Q Consensus 143 ~rA~~aG~~AlvvTvD~ 159 (234)
+++++.|.+..+.++-+
T Consensus 139 ~~l~~~g~~v~v~~vv~ 155 (358)
T TIGR02109 139 RAVKAAGLPLTLNFVIH 155 (358)
T ss_pred HHHHhCCCceEEEEEec
Confidence 67778888765555543
No 301
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.41 E-value=1.3e+02 Score=26.00 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTP 160 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~p 160 (234)
...+++++++++|.+..+-|||.+
T Consensus 197 ~~~~~v~~~~~~g~~v~~WTvn~~ 220 (249)
T PRK09454 197 LDEARVAALKAAGLRILVYTVNDP 220 (249)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH
Confidence 467899999999999999999875
No 302
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=20.24 E-value=2.3e+02 Score=21.73 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCchhhHhhccC
Q 026729 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (234)
Q Consensus 137 ~~~~li~rA~~aG~~AlvvTvD~pv~G~Re~d~r~~f 173 (234)
+...+++.|++.|++.|.+++... |..--.|+||
T Consensus 106 ll~~~~~~a~~~g~~~i~l~~~~~---N~~~y~k~GF 139 (150)
T PLN02706 106 IIEALTEHARSAGCYKVILDCSEE---NKAFYEKCGY 139 (150)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccc---cHHHHHHCcC
Confidence 456777788888999999999854 3333345666
No 303
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.22 E-value=97 Score=28.69 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.5
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEE
Q 026729 132 YKDRNVVAQLVRRAERAGFKAIAL 155 (234)
Q Consensus 132 ~~d~~~~~~li~rA~~aG~~Alvv 155 (234)
.+|.+..++||+.|+++|++|+=+
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKF 36 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKL 36 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEe
Confidence 468899999999999999997543
No 304
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=20.19 E-value=88 Score=21.42 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHhCCCccc
Q 026729 211 SLSWKNILCLYQDFSFECD 229 (234)
Q Consensus 211 ~~tW~di~wlr~~w~l~~~ 229 (234)
.-+|+.+++|+++++.||-
T Consensus 47 ~~d~~~~~~l~~~~~~pia 65 (67)
T PF01188_consen 47 PDDLDGLAELRQQTSVPIA 65 (67)
T ss_dssp TTSHHHHHHHHHHCSSEEE
T ss_pred CCCHHHHHHHHHhCCCCEE
Confidence 3468999999999999974
No 305
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.17 E-value=4.7e+02 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=16.0
Q ss_pred ccCchhHHHHHHHHHhcCCceEeCCC
Q 026729 84 MAHPEGEYATARAASAAGTIMTLSSW 109 (234)
Q Consensus 84 l~~p~gE~a~AraA~~~gi~~~lSs~ 109 (234)
+.|...-..+-+.|++.|+|..+-..
T Consensus 41 ~~h~~~~e~~~~~A~~lgipl~~i~~ 66 (194)
T cd01994 41 MYHTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeC
Confidence 34544333455677889999776543
No 306
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.12 E-value=6.1e+02 Score=22.39 Aligned_cols=80 Identities=19% Similarity=0.092 Sum_probs=49.6
Q ss_pred EecccccccccCchhHHHHHHHHHhcCCce--EeCCCC---CCCHHHHH-------hcCCCccEEEEeeeCCHHHHHHHH
Q 026729 75 MIAPTAMQKMAHPEGEYATARAASAAGTIM--TLSSWS---TSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLV 142 (234)
Q Consensus 75 ~iaP~g~~~l~~p~gE~a~AraA~~~gi~~--~lSs~s---s~sle~ia-------~~~~~~~wfQlY~~~d~~~~~~li 142 (234)
++.|+-- +-.+.++=..+++-..+.|+-- +.+|.+ +.|.||-. +.. +...+++- ..+-..+.++.
T Consensus 8 ~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~vi~gvg-~~~~~~ai~~a 84 (279)
T cd00953 8 VITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKVIFQVG-SLNLEESIELA 84 (279)
T ss_pred eecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCEEEEeC-cCCHHHHHHHH
Confidence 3566654 4456666666777777777544 444443 34555432 222 33455542 23556778899
Q ss_pred HHHHHcCCcEEEEee
Q 026729 143 RRAERAGFKAIALTV 157 (234)
Q Consensus 143 ~rA~~aG~~AlvvTv 157 (234)
+.|+++|+++++++.
T Consensus 85 ~~a~~~Gad~v~v~~ 99 (279)
T cd00953 85 RAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHcCCCEEEEeC
Confidence 999999999999876
No 307
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=20.06 E-value=2e+02 Score=23.85 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCcEEEE
Q 026729 140 QLVRRAERAGFKAIAL 155 (234)
Q Consensus 140 ~li~rA~~aG~~Alvv 155 (234)
+-+.+|.++|++.|.+
T Consensus 108 ~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 108 TEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 3344555555555554
Done!