BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026730
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XI00|SKI32_ARATH F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1
Length = 328
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/221 (78%), Positives = 202/221 (91%), Gaps = 2/221 (0%)
Query: 16 KLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVC 75
+ +GV+ENYKILQS+Y+GSWRKMWLLR R+R DGLYVSRNTYIRAG+AEWKITNPVHIVC
Sbjct: 108 QTAGVIENYKILQSKYDGSWRKMWLLRSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVC 167
Query: 76 YYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLS--EEKVEAAVLYP 133
YYRY+RF+PSGRF+YKNSSQK+KDVAK MNF+A+K++ ++ G YTLS ++K+EAAVLYP
Sbjct: 168 YYRYIRFYPSGRFLYKNSSQKLKDVAKYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYP 227
Query: 134 GLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHN 193
G RPTVLRIRLRLRGT GANNRMDLLSLVTSG+ND E++ +EDILG+VEGW+DDETHN
Sbjct: 228 GTRPTVLRIRLRLRGTAIGANNRMDLLSLVTSGVNDEEISSTEEDILGLVEGWEDDETHN 287
Query: 194 PDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG 234
PD+PAVSHKRG+T FVFVPFEEV+ SVLNLP EKMDYYV G
Sbjct: 288 PDIPAVSHKRGMTAFVFVPFEEVDESVLNLPPEKMDYYVTG 328
>sp|Q8BK06|FBX9_MOUSE F-box only protein 9 OS=Mus musculus GN=Fbxo9 PE=2 SV=1
Length = 437
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 33 GSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYK 91
SWR+M+L RPR+R DG+Y+S+ TYIR G H V YYRYMRFFP G +
Sbjct: 242 ASWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYMRFFPDGHVMML 301
Query: 92 NSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 124
+ ++ + + R + D + GHY LS++
Sbjct: 302 TTPEEPPSIVPRLRTRNTRTDAILLGHYRLSQD 334
>sp|Q9UK97|FBX9_HUMAN F-box only protein 9 OS=Homo sapiens GN=FBXO9 PE=1 SV=1
Length = 447
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 34 SWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKN 92
SWR+M+L RPR+R DG+Y+S+ TYIR G H V YYRY+RFFP G +
Sbjct: 253 SWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLT 312
Query: 93 SSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 124
+ ++ + + + R + D + GHY LS++
Sbjct: 313 TPEEPQSIVPRLRTRNTRTDAILLGHYRLSQD 344
>sp|Q3ZBT2|FBX9_BOVIN F-box only protein 9 OS=Bos taurus GN=FBXO9 PE=2 SV=2
Length = 437
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 34 SWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKN 92
SWR+M+L RPR+R DG+Y+S+ TYIR G H V YYRY+RFFP G +
Sbjct: 243 SWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYVRFFPDGHVMMLT 302
Query: 93 SSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 124
+ ++ + + + R + D + GHY LS++
Sbjct: 303 TPEEPQSIVPRLRTRNTRTDAILLGHYRLSQD 334
>sp|Q5U2X1|FBX9_RAT F-box only protein 9 OS=Rattus norvegicus GN=Fbxo9 PE=2 SV=1
Length = 435
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 33 GSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYK 91
SWR+M+L RPR+R DG+Y+S+ TYIR G H V YYRY+RFFP G +
Sbjct: 240 SSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMML 299
Query: 92 NSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 124
+ ++ + + R + D + GHY LS++
Sbjct: 300 TTPEEPPSIVPRLRTRNTRTDAILLGHYRLSQD 332
>sp|F6Y9J3|FBX9_XENTR F-box only protein 9 OS=Xenopus tropicalis GN=fbxo9 PE=3 SV=1
Length = 431
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 34 SWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKN 92
+WR+M+L RPR+R DG+Y+S+ TYIR G H V YYRY+RFFP G +
Sbjct: 236 TWRQMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYLRFFPDGHVMMLT 295
Query: 93 SSQKIKDVAKIMNFRAAKADCVFTGHYTLSEE 124
+ + + + + + A+ D + GHY LS++
Sbjct: 296 TPEDPQTIVPRLRTKNARTDAMLLGHYRLSQD 327
>sp|Q6P3K3|FBX9_DANRE F-box only protein 9 OS=Danio rerio GN=fbxo9 PE=2 SV=1
Length = 421
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 33 GSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYK 91
SWR+M+L RPR+R DG+Y+S+ +YIR G H V YYRY+RFFP G+ +
Sbjct: 225 SSWREMFLERPRVRFDGVYISKTSYIRQGEESLDGFYRAWHQVEYYRYLRFFPDGQVMML 284
Query: 92 NSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLY 132
+ + + + ++ D + GHY LS++ +Y
Sbjct: 285 TTPEDPLVTVPRLRSKNSRMDSIMFGHYRLSQDTDNQTKVY 325
>sp|O74531|POF7_SCHPO F-box protein pof7 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=pof7 PE=1 SV=2
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 27 LQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSG 86
L +Y+ SW+ ++L +PR R DG Y+S Y R G ++ P+H++ YYRY+R +P+
Sbjct: 181 LVEKYQQSWKTLFLKKPRSRFDGCYISVCRYFRPGTSDTSWNQPIHLITYYRYLRLYPNS 240
Query: 87 RFIYKNSSQKIKDVAKIMNFR-------------AAKADCVFTGHYTLSEEKVEAAVLYP 133
I SS + DV + + + + + TG ++++ E ++YP
Sbjct: 241 TCIVYQSSNEPNDVVRNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSG-EMLIVYP 299
Query: 134 GLRPTVLRIRLRLRG 148
+ +L++RG
Sbjct: 300 ASQTYTYVQKLQVRG 314
>sp|Q12347|HRT3_YEAST F-box protein HRT3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=HRT3 PE=1 SV=1
Length = 344
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 15 VKLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGV---AEWKITNPV 71
+ L+G+ + + + G +M RP I+ +G+Y+S Y+R G + + PV
Sbjct: 162 MDLNGITDINTFEKEIWRGDDYRMLRERPYIKFEGVYISVVNYVRYGSNAESSLSLLKPV 221
Query: 72 HIVCYYRYMRFFPSGRFI 89
H++ YYRY RF+ +G+ +
Sbjct: 222 HMITYYRYFRFYENGQCL 239
>sp|Q43845|SPSA_SOLTU Probable sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS
PE=2 SV=1
Length = 1053
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 131 LYPGLRPTVLR-IRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDD 189
LY G P + R +R R++ + M ++++ GM + + H+ D+ G EG +D
Sbjct: 394 LYDGFDPILERKLRARIKRNVSCYGRFMPRMAVIPPGMEFHHIVPHEGDMDGETEGSEDG 453
Query: 190 ETHNPDV 196
+T +P +
Sbjct: 454 KTPDPPI 460
>sp|Q11RH5|MURG_CYTH3 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Cytophaga hutchinsonii (strain ATCC 33406
/ NCIMB 9469) GN=murG PE=3 SV=1
Length = 369
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 5 SFKLETGVSFVKLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDG---LYVSRNTYIRAG 61
+F L+ S+ K +V +K + G + W L G L +N+Y AG
Sbjct: 78 AFPLKVIASYFKAKKIVSTFKPDIAIGVGGYAS-WPLLQAANASGVATLIQEQNSY--AG 134
Query: 62 VAEWKITNPVHIVC--YYRYMRFFPSGRFIY 90
VA ++ V +C Y R RFFP + +Y
Sbjct: 135 VANKALSKKVKAICVAYERMERFFPGDKIVY 165
>sp|Q87NE7|RIBA_VIBPA GTP cyclohydrolase-2 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ribA PE=3 SV=1
Length = 198
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 106 FRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTS 165
F +++ DC E++E + G V+ + LR G G N++D L +
Sbjct: 63 FHSSRCDC---------GEQLEETIQRMGESGGVI-LYLRQEGRGIGLYNKIDAYRLQSQ 112
Query: 166 GMNDNEVNGH---DEDILGVVEGWQ 187
GMN E N H D+D+ E Q
Sbjct: 113 GMNTYEANNHLGFDDDLRDFTEAAQ 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,737,219
Number of Sequences: 539616
Number of extensions: 3687071
Number of successful extensions: 7180
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7163
Number of HSP's gapped (non-prelim): 18
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)