Query 026730
Match_columns 234
No_of_seqs 130 out of 188
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 11:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2997 F-box protein FBX9 [Ge 100.0 2.5E-51 5.3E-56 377.0 9.7 190 13-222 158-366 (366)
2 KOG2997 F-box protein FBX9 [Ge 83.2 1.5 3.4E-05 41.9 4.1 18 68-85 254-271 (366)
3 PHA02123 hypothetical protein 61.4 6.6 0.00014 32.6 2.3 63 12-95 75-139 (146)
4 PF13924 Lipocalin_5: Lipocali 53.0 1.2E+02 0.0027 24.6 8.7 52 79-130 30-89 (140)
5 PF11794 HpaB_N: 4-hydroxyphen 33.1 20 0.00044 33.0 1.0 8 209-216 255-262 (264)
6 TIGR03067 Planc_TIGR03067 Plan 32.5 1E+02 0.0022 24.3 4.8 61 79-140 40-106 (107)
7 COG2826 Tra8 Transposase and i 25.3 20 0.00044 34.1 -0.4 28 81-108 270-297 (318)
8 PF07151 DUF1391: Protein of u 24.1 24 0.00051 24.8 -0.2 15 3-17 31-45 (49)
9 PF07661 MORN_2: MORN repeat v 23.5 90 0.002 16.9 2.2 14 79-92 5-18 (22)
10 cd06537 CIDE_N_B CIDE_N domain 20.8 41 0.00088 26.2 0.5 19 78-96 55-73 (81)
11 TIGR02310 HpaB-2 4-hydroxyphen 20.2 31 0.00068 34.7 -0.3 8 209-216 271-278 (519)
No 1
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=100.00 E-value=2.5e-51 Score=377.03 Aligned_cols=190 Identities=34% Similarity=0.535 Sum_probs=174.2
Q ss_pred cceeecChhhhhHhhhccccccHHHHHHhCCccccCcEEEEeeeeEecCcccc-cccCceEEEEEeeeEEEecCCeEEEe
Q 026730 13 SFVKLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEW-KITNPVHIVCYYRYMRFFPSGRFIYK 91 (234)
Q Consensus 13 ~~~~l~~~~~~~~l~~~~y~~sWr~Mf~~RPrIRfdG~YIS~~tYiR~Ge~e~-s~~~Pvh~VtYYRYLRFfpDGtvl~l 91 (234)
--||.+++..+.++++++|.+|||+||++||||||||||||+|||||+|++++ +|++|||+|||||||||||||+|||+
T Consensus 158 KvW~~s~~~ln~~~~~sky~~SWR~Mfl~RpRvrFdG~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRFyP~G~~l~~ 237 (366)
T KOG2997|consen 158 KVWQRSCIKLNPKILQSKYYTSWREMFLERPRVRFDGVYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRFYPDGHVLML 237 (366)
T ss_pred HHHHHhhhccchhhhhhHHHhHHHHHHhhCcceeecceEEEEEeEeecCchhhhhhcCcceeeEEEEEEEecCCCcEEEE
Confidence 35889999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccccHHHHhhhccccccCCCcEEEEEEEEeCCEEEEEEecCC------------------CcceEEEEEEEEecCCCCc
Q 026730 92 NSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPG------------------LRPTVLRIRLRLRGTTAGA 153 (234)
Q Consensus 92 lS~~~P~~VV~~l~~~~~~~~~~~~G~~~L~~d~v~i~v~~pg------------------~~~~~f~~~L~lrs~~~g~ 153 (234)
+|+++|++||++|+.++.+...++.|+|+++++.|++++..++ ...++|.++|+|++++..+
T Consensus 238 ~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~dv~~al~~~~~~~ps~~~~~r~~~~~v~~~s~tfl~~l~l~~~g~rr 317 (366)
T KOG2997|consen 238 TSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSDVFAALTKSKERTPSDYKYRRGRRVPVQEASQTFLVELQLCGSGHRR 317 (366)
T ss_pred eCCcChHHHHHhhhhccCcchhhhcccccccCCchhhhhccCcccCchhhhhhcccccccccccceeEEEEEEecccchh
Confidence 9999999999999999988899999999999988877776321 1346799999999999999
Q ss_pred cceeEEeeeEEEecCCCCCCCCCCcccccccccccCCCCCCCCCcccccCCCcceEeeecccccccccc
Q 026730 154 NNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLN 222 (234)
Q Consensus 154 nnkL~w~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rgl~~~~fvp~e~v~~~~ln 222 (234)
.|+|+|.++. +++|++.|++.++.|++.|+++ .-|++||+++++.+.||
T Consensus 318 ~~~L~W~~~~-------------------~~~~~d~et~~se~~l~~~k~~-~~FsrV~Sy~~d~e~l~ 366 (366)
T KOG2997|consen 318 FNKLKWIHHS-------------------ITYKSDKETAVSEFPLTKMKTP-LFFSRVKSYTADSERLL 366 (366)
T ss_pred hhhheeeeee-------------------eeEeecccccccCCccccccCc-ceEEEeeeeeccccccC
Confidence 9999988765 2468888999999999999999 88999999999988875
No 2
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=83.16 E-value=1.5 Score=41.95 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=10.3
Q ss_pred cCceEEEEEeeeEEEecC
Q 026730 68 TNPVHIVCYYRYMRFFPS 85 (234)
Q Consensus 68 ~~Pvh~VtYYRYLRFfpD 85 (234)
+++-|-.--++|.-|--|
T Consensus 254 Nt~~~s~~~g~y~ls~~d 271 (366)
T KOG2997|consen 254 NTRRDSILLGHYRLSQSD 271 (366)
T ss_pred cCcchhhhcccccccCCc
Confidence 455565556666655444
No 3
>PHA02123 hypothetical protein
Probab=61.45 E-value=6.6 Score=32.59 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=44.4
Q ss_pred ecceeecChhhhhHhhhccccccHHHHHHhCCccccCcEEEEeeeeEecCccc--ccccCceEEEEEeeeEEEecCCeEE
Q 026730 12 VSFVKLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAE--WKITNPVHIVCYYRYMRFFPSGRFI 89 (234)
Q Consensus 12 ~~~~~l~~~~~~~~l~~~~y~~sWr~Mf~~RPrIRfdG~YIS~~tYiR~Ge~e--~s~~~Pvh~VtYYRYLRFfpDGtvl 89 (234)
+..|-..|..++..++.. .+|--|-|||+ +-.+.|+|.|.+- |..-|| -|-|=|.|+
T Consensus 75 sdyw~id~ar~d~~il~~----------servmis~~gi-vqnv~yirsgsaivi~r~dnp----------~fnp~g~v~ 133 (146)
T PHA02123 75 SDYWLIDGARDDKNILVG----------TERVMISLNGI-VQNVDYIRSGSAIVIRRMDNP----------TFNPIGDVL 133 (146)
T ss_pred CceEEEecccCCCceeec----------ceEEEEEecce-EeeeEEEecCcEEEEEecCCC----------CCCcccceE
Confidence 455666676666665432 24566788997 5568999999763 344577 478899999
Q ss_pred Eeeccc
Q 026730 90 YKNSSQ 95 (234)
Q Consensus 90 ~llS~~ 95 (234)
+.+|+.
T Consensus 134 sitt~~ 139 (146)
T PHA02123 134 SITTSS 139 (146)
T ss_pred EEecCC
Confidence 999875
No 4
>PF13924 Lipocalin_5: Lipocalin-like domain
Probab=53.05 E-value=1.2e+02 Score=24.57 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=28.4
Q ss_pred eEEEecCCeEEEeeccccHHHHhhhcccc--------ccCCCcEEEEEEEEeCCEEEEEE
Q 026730 79 YMRFFPSGRFIYKNSSQKIKDVAKIMNFR--------AAKADCVFTGHYTLSEEKVEAAV 130 (234)
Q Consensus 79 YLRFfpDGtvl~llS~~~P~~VV~~l~~~--------~~~~~~~~~G~~~L~~d~v~i~v 130 (234)
+|=|-|||.+...++...+......-... ..+.--.+.|+|+++++.|+-.+
T Consensus 30 ~l~Yt~dG~ms~~i~~~~r~~~~~~~~~~~t~~e~~~~~~~~~aY~G~y~v~~~~v~h~v 89 (140)
T PF13924_consen 30 LLIYTPDGYMSAQIMRPDRPPFASPDKWNATDAEWAAAARGYLAYSGRYEVDEDTVTHHV 89 (140)
T ss_pred EEEECCCCeEEEEEecCCCCCcCcCccccCCHHHHHHHhhhheEEEEEEEEcCcEEEEEE
Confidence 45568999885555444332211111000 11234678999999999554443
No 5
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=33.08 E-value=20 Score=32.99 Aligned_cols=8 Identities=75% Similarity=1.348 Sum_probs=7.3
Q ss_pred Eeeecccc
Q 026730 209 VFVPFEEV 216 (234)
Q Consensus 209 ~fvp~e~v 216 (234)
||||||-|
T Consensus 255 VfVPWeRV 262 (264)
T PF11794_consen 255 VFVPWERV 262 (264)
T ss_dssp EEEEGGGE
T ss_pred cccchhhc
Confidence 89999987
No 6
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=32.51 E-value=1e+02 Score=24.29 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=34.3
Q ss_pred eEEEecCCeE----EEeeccccHHHHhhhccccccCCCcEEEEEEEEeCCEEEEEEecCCC--cceEE
Q 026730 79 YMRFFPSGRF----IYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGL--RPTVL 140 (234)
Q Consensus 79 YLRFfpDGtv----l~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~L~~d~v~i~v~~pg~--~~~~f 140 (234)
|---.++|+. +.|-++.+|+.+==. ....+.....+.|-|+|++|+..+-...+|. +|+.|
T Consensus 40 ~~~~~~~~~~~~~~~~Ld~~~~Pk~id~~-~~~g~~~g~~~~gIY~l~gd~L~vC~~~~g~~~RPt~F 106 (107)
T TIGR03067 40 LTVKDGEGDQGKGTFKLDPAANPKTIDLT-SPDGPDKGKTIKGIYKLDGDTLTVCFSGGGDKPRPTEF 106 (107)
T ss_pred EEEEcCCCcceeEEEEECCCCCccEEEEE-ccCCCCCCCEEEEEEEEcCCEEEEEECCCCCCCCCCCC
Confidence 3334456642 333355566543211 1111223458999999999987776655554 67665
No 7
>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
Probab=25.30 E-value=20 Score=34.09 Aligned_cols=28 Identities=25% Similarity=0.575 Sum_probs=25.8
Q ss_pred EEecCCeEEEeeccccHHHHhhhccccc
Q 026730 81 RFFPSGRFIYKNSSQKIKDVAKIMNFRA 108 (234)
Q Consensus 81 RFfpDGtvl~llS~~~P~~VV~~l~~~~ 108 (234)
||||-||.|...|+++...|...|+.+.
T Consensus 270 rf~PKgTdla~vt~~el~~i~~~lN~rP 297 (318)
T COG2826 270 RFLPKGTDLAAVTQEELAAIADLLNHRP 297 (318)
T ss_pred HhCCCCCchhhCCHHHHHHHHHHHhcCc
Confidence 7999999999999999999999998753
No 8
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=24.12 E-value=24 Score=24.76 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=13.3
Q ss_pred ccceeeeeeecceee
Q 026730 3 SKSFKLETGVSFVKL 17 (234)
Q Consensus 3 ~~~~~~~~~~~~~~l 17 (234)
||.||-|+|..+|-.
T Consensus 31 sktfkte~garrwl~ 45 (49)
T PF07151_consen 31 SKTFKTESGARRWLA 45 (49)
T ss_pred cceeecchhhhHHHh
Confidence 799999999999953
No 9
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=23.49 E-value=90 Score=16.90 Aligned_cols=14 Identities=7% Similarity=0.453 Sum_probs=10.3
Q ss_pred eEEEecCCeEEEee
Q 026730 79 YMRFFPSGRFIYKN 92 (234)
Q Consensus 79 YLRFfpDGtvl~ll 92 (234)
+.+|++||+.....
T Consensus 5 ~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 5 WKFYYENGKLKSEG 18 (22)
T ss_pred EEEEeCCCCEEEEE
Confidence 56789999876644
No 10
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=20.83 E-value=41 Score=26.15 Aligned_cols=19 Identities=0% Similarity=0.155 Sum_probs=16.4
Q ss_pred eeEEEecCCeEEEeecccc
Q 026730 78 RYMRFFPSGRFIYKNSSQK 96 (234)
Q Consensus 78 RYLRFfpDGtvl~llS~~~ 96 (234)
-||...||.+++++|.+.+
T Consensus 55 eyF~tLpdnT~lm~L~~gq 73 (81)
T cd06537 55 DFFELLEDDTCLMVLEQGQ 73 (81)
T ss_pred HHHhhCCCCCEEEEECCCC
Confidence 5899999999999998764
No 11
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=20.17 E-value=31 Score=34.74 Aligned_cols=8 Identities=63% Similarity=1.356 Sum_probs=7.4
Q ss_pred Eeeecccc
Q 026730 209 VFVPFEEV 216 (234)
Q Consensus 209 ~fvp~e~v 216 (234)
||||||.|
T Consensus 271 VfVPWErV 278 (519)
T TIGR02310 271 VFIPWENV 278 (519)
T ss_pred cccchHHc
Confidence 79999988
Done!