Query 026730
Match_columns 234
No_of_seqs 130 out of 188
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 51.5 31 0.0011 28.2 6.0 77 82-175 41-122 (142)
2 3ol0_A De novo designed monome 24.7 31 0.0011 23.2 1.5 22 79-100 18-39 (48)
3 1flt_X FLT-1, VGR1, FMS-like t 22.9 15 0.00051 27.4 -0.4 26 30-56 54-79 (95)
4 2k3u_B C5AR(P7-28S) peptide, c 21.1 33 0.0011 20.2 0.9 16 213-228 9-24 (26)
5 2yfu_A Carbohydrate binding fa 17.6 42 0.0014 27.1 1.2 10 77-86 116-125 (155)
6 3e0r_A C3-degrading proteinase 17.4 96 0.0033 27.2 3.5 40 184-231 128-167 (244)
7 4i95_A Putative uncharacterize 14.9 3.7E+02 0.013 21.8 6.1 87 83-192 42-133 (142)
8 3bdr_A YCF58 protein; X-RAY, N 13.8 2E+02 0.0068 24.2 4.4 54 115-169 116-175 (190)
9 3vej_A Ubiquitin-like protein 11.4 30 0.001 22.8 -1.1 9 211-219 6-14 (41)
10 2eel_A Cell death activator CI 11.0 33 0.0011 25.9 -1.1 27 70-96 47-81 (91)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=51.54 E-value=31 Score=28.18 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=45.3
Q ss_pred EecCCeEEEeeccccHHHHhhhccccccCCCcEEEEEEEEeCCEEEEEEe-----cCCCcceEEEEEEEEecCCCCccce
Q 026730 82 FFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNR 156 (234)
Q Consensus 82 FfpDGtvl~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~L~~d~v~i~v~-----~pg~~~~~f~~~L~lrs~~~g~nnk 156 (234)
..+|||+..++....... -=...|+|.+..|....+-+ .|-...+.-.+++.+... |.
T Consensus 41 lS~DgtF~N~~m~~~~~a------------iIt~yGtY~l~SD~~Y~E~i~kni~~p~~~g~~n~L~fe~~~d-----n~ 103 (142)
T 4gzv_A 41 LSDDGRIVNFTIIPGADA------------IITGYGTYKQLTDDSYKESIEKNIHLPMLDNQDNILEFEIKDN-----DY 103 (142)
T ss_dssp ECTTSEEEEEECCTTSCC------------EEEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEEETT-----TE
T ss_pred ECCCCcEEEEEEeCCCCc------------EEEEeEEEEecCCCeeeeeecccccCccccCCccEEEEEEccC-----CE
Confidence 579999977764211111 12457999998873333222 233333444667766653 77
Q ss_pred eEEeeeEEEecCCCCCCCC
Q 026730 157 MDLLSLVTSGMNDNEVNGH 175 (234)
Q Consensus 157 L~w~~~~s~~~~~~e~~~~ 175 (234)
|...-++..+.+++|++.|
T Consensus 104 l~lsy~~~~~~~G~e~~~w 122 (142)
T 4gzv_A 104 LHLKYFIKSDLNGNELNTW 122 (142)
T ss_dssp EEEEEEEEECTTCCEEEEE
T ss_pred EEEEEEccCCCCCcccCCc
Confidence 7766667777787775554
No 2
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=24.73 E-value=31 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=15.9
Q ss_pred eEEEecCCeEEEeeccccHHHH
Q 026730 79 YMRFFPSGRFIYKNSSQKIKDV 100 (234)
Q Consensus 79 YLRFfpDGtvl~llS~~~P~~V 100 (234)
|||.+|||++----...+|..+
T Consensus 18 ~LqI~PdG~V~GTr~~~s~~Sl 39 (48)
T 3ol0_A 18 YLRINPDGTVDGTRDRSDPHIQ 39 (48)
T ss_dssp EEEECTTSBEEEESCTTCGGGC
T ss_pred EeEECCCCCCccccCCCCCcce
Confidence 8999999998765555455443
No 3
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=22.94 E-value=15 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred cccccHHHHHHhCCccccCcEEEEeee
Q 026730 30 RYEGSWRKMWLLRPRIRIDGLYVSRNT 56 (234)
Q Consensus 30 ~y~~sWr~Mf~~RPrIRfdG~YIS~~t 56 (234)
.| +.+|-+.+.+|.+.++|+|+|..+
T Consensus 54 ~~-D~k~Gf~I~~~~~~~~g~y~C~a~ 79 (95)
T 1flt_X 54 IW-DSRKGFIISNATYKEIGLLTCEAT 79 (95)
T ss_dssp EE-ETTTEEEESSCCGGGCEEEEEEEE
T ss_pred eE-CCCCCEEEeCCCcccCcEEEEEEE
Confidence 56 578889999999999999999854
No 4
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=21.14 E-value=33 Score=20.19 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.1
Q ss_pred cccccccccccccccc
Q 026730 213 FEEVETSVLNLPVEKM 228 (234)
Q Consensus 213 ~e~v~~~~ln~~~~~m 228 (234)
+++-+|-.||-||+|.
T Consensus 9 yddkdtldlntpvdk~ 24 (26)
T 2k3u_B 9 YDDKDTLDLNTPVDKX 24 (26)
T ss_dssp ECSSSCCBTTCCCCC-
T ss_pred cCCccccccCCccccc
Confidence 5778889999999985
No 5
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=17.63 E-value=42 Score=27.12 Aligned_cols=10 Identities=30% Similarity=1.062 Sum_probs=8.0
Q ss_pred eeeEEEecCC
Q 026730 77 YRYMRFFPSG 86 (234)
Q Consensus 77 YRYLRFfpDG 86 (234)
|||+||..--
T Consensus 116 yRYiRy~~p~ 125 (155)
T 2yfu_A 116 FRYVRYLSPD 125 (155)
T ss_dssp ESEEEEECCT
T ss_pred EEEEEEEcCC
Confidence 9999998543
No 6
>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}
Probab=17.36 E-value=96 Score=27.17 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=27.0
Q ss_pred cccccCCCCCCCCCcccccCCCcceEeeecccccccccccccccccee
Q 026730 184 EGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYY 231 (234)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~rgl~~~~fvp~e~v~~~~ln~~~~~md~~ 231 (234)
+.|++..+. ++..+-.+-.||+.|.| .|+-+|.|+-.. ||
T Consensus 128 ~~l~~v~~~-~~l~~~~~~~gLs~fti----~I~LnV~d~~~s---Fy 167 (244)
T 3e0r_A 128 ASLVEVGEK-PEFQTDLASISLSKFEI----SMELHLPTDIES---FL 167 (244)
T ss_dssp GGCEECSSC-CCCCCCCSCCCCSSEEE----EEEEEECTTCCC---SC
T ss_pred HHhhcccch-hhccccccccCCCCcEE----EEEEEcCchHHH---Hh
Confidence 446654332 44444555779999996 999999998554 66
No 7
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=14.93 E-value=3.7e+02 Score=21.81 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=48.3
Q ss_pred ecCCeEEEeeccccHHHHhhhccccccCCCcEEEEEEEEeCCEEEEEEe-----cCCCcceEEEEEEEEecCCCCcccee
Q 026730 83 FPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNRM 157 (234)
Q Consensus 83 fpDGtvl~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~L~~d~v~i~v~-----~pg~~~~~f~~~L~lrs~~~g~nnkL 157 (234)
..|||+.-++.. | .+..--...|.|++..|....+-+ .|-...+...+++.+... |.|
T Consensus 42 SdDgtF~Ni~m~--~----------~~~aiIt~~GtY~~~SD~~Y~E~IeKni~lp~l~g~~N~l~fE~~~d-----nlm 104 (142)
T 4i95_A 42 SDDGRIVNFTIR--P----------GTDAIITGYGTYRQISAAAYKESIEKNIHLPMLDNKDNILEFEMGAG-----GVM 104 (142)
T ss_dssp CTTSEEEEEECC--T----------TSCCEEEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEECST-----TEE
T ss_pred cCCCcEEEEEEe--c----------CCCcEEEEeEEEEecCCcceeeeecccccCcccCCCccEEEEEEccC-----CEE
Confidence 567777665554 1 011123567999998773333322 232233344567666553 566
Q ss_pred EEeeeEEEecCCCCCCCCCCcccccccccccCCCC
Q 026730 158 DLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETH 192 (234)
Q Consensus 158 ~w~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 192 (234)
.+.-|+.-+++++|++.| ..|-|--.+.+
T Consensus 105 ~lky~~~~dl~G~e~~~w------~~E~W~RV~mP 133 (142)
T 4i95_A 105 YLKYFIEKDLNGNELNTW------FHETWKRVTMP 133 (142)
T ss_dssp EEEEEEEECTTSCEEEEE------EEEEEEECCCC
T ss_pred EEEEEeeccCCCCccCCc------eEEEEEeccCC
Confidence 655566668888875553 24566666544
No 8
>3bdr_A YCF58 protein; X-RAY, NESG, Q8DI91, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Synechococcus elongatus}
Probab=13.79 E-value=2e+02 Score=24.16 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=31.4
Q ss_pred EEEEEEEeCC-EEEEEEecCCCcceEEEEE-----EEEecCCCCccceeEEeeeEEEecCC
Q 026730 115 FTGHYTLSEE-KVEAAVLYPGLRPTVLRIR-----LRLRGTTAGANNRMDLLSLVTSGMND 169 (234)
Q Consensus 115 ~~G~~~L~~d-~v~i~v~~pg~~~~~f~~~-----L~lrs~~~g~nnkL~w~~~~s~~~~~ 169 (234)
..|+|.+++| .+.++..|.+....+ +++ ||+|++.-.+.|-....+|+|--+..
T Consensus 116 v~g~y~~~~d~~L~L~TeY~~~~~eE-RiWF~~pNlRlRtS~v~~~~G~~~~sFcSEiR~~ 175 (190)
T 3bdr_A 116 VAGRFSMGSDGALTLITEYETIYSEE-RLWFASPNLRLRTSILKRFGGFSMASFCSEIRLG 175 (190)
T ss_dssp --CEEEECTTSCEEEEEECSSCEEEE-EEEEEETTEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EeEEEEECCCCeEEEEEeeCCEEEEE-EEEecCCCEEeEEEEEEcCCCeEeeEEEEEEeec
Confidence 5699999987 566665566554333 232 45665544444555566677766653
No 9
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=11.40 E-value=30 Score=22.79 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=7.3
Q ss_pred eeccccccc
Q 026730 211 VPFEEVETS 219 (234)
Q Consensus 211 vp~e~v~~~ 219 (234)
|||+++++-
T Consensus 6 VPWd~Ie~l 14 (41)
T 3vej_A 6 VPWDDIEAL 14 (41)
T ss_dssp SCHHHHHHH
T ss_pred cCHHHHHHH
Confidence 899998763
No 10
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.00 E-value=33 Score=25.91 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=20.8
Q ss_pred ceEEEEEe--------eeEEEecCCeEEEeecccc
Q 026730 70 PVHIVCYY--------RYMRFFPSGRFIYKNSSQK 96 (234)
Q Consensus 70 Pvh~VtYY--------RYLRFfpDGtvl~llS~~~ 96 (234)
++++|-+. -||...||.|++++|.+.+
T Consensus 47 ~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge 81 (91)
T 2eel_A 47 LVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQ 81 (91)
T ss_dssp CEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTC
T ss_pred CcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCC
Confidence 56666653 3788999999999998764
Done!