Query 026730
Match_columns 234
No_of_seqs 130 out of 188
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 20:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ovrb1 a.158.1.1 (B:2263-2364 24.8 5 0.00036 27.2 -0.9 18 31-48 85-102 (102)
2 d1u8va2 e.6.1.1 (A:1-275) 4-hy 20.6 14 0.001 30.1 1.0 8 209-216 265-272 (275)
3 d1vqoe2 d.141.1.1 (E:80-172) R 16.2 25 0.0018 25.0 1.4 13 42-54 79-91 (93)
4 d1fltx_ b.1.1.4 (X:) Second do 15.5 13 0.00095 26.0 -0.4 25 30-55 54-78 (95)
5 d1k32a3 b.69.9.1 (A:320-679) T 12.9 51 0.0037 24.3 2.4 18 78-95 46-63 (360)
6 d1dqta_ b.1.1.1 (A:) Immunorec 12.2 1.5E+02 0.011 19.7 4.7 15 78-92 101-115 (117)
7 d1tkea1 d.15.10.1 (A:1-62) Thr 10.4 58 0.0042 20.4 1.7 24 83-106 6-29 (62)
8 d1c9fa_ d.15.2.1 (A:) Caspase- 9.9 30 0.0022 24.2 0.1 19 78-96 61-79 (87)
9 d2hqsa1 b.68.4.1 (A:163-431) T 9.4 74 0.0054 22.9 2.3 17 78-94 217-233 (269)
10 d1ibxa_ d.15.2.1 (A:) Caspase- 9.3 26 0.0019 24.3 -0.4 19 78-96 58-76 (81)
No 1
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.85 E-value=5 Score=27.18 Aligned_cols=18 Identities=17% Similarity=0.591 Sum_probs=14.6
Q ss_pred ccccHHHHHHhCCccccC
Q 026730 31 YEGSWRKMWLLRPRIRID 48 (234)
Q Consensus 31 y~~sWr~Mf~~RPrIRfd 48 (234)
-..+||.+|+++-|++.|
T Consensus 85 ~~~~WK~~Y~~~~~l~~n 102 (102)
T d2ovrb1 85 IHSPWKSAYIRQHRIDTN 102 (102)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcC
Confidence 346799999999988754
No 2
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}
Probab=20.56 E-value=14 Score=30.08 Aligned_cols=8 Identities=38% Similarity=1.007 Sum_probs=7.2
Q ss_pred Eeeecccc
Q 026730 209 VFVPFEEV 216 (234)
Q Consensus 209 ~fvp~e~v 216 (234)
||||||.|
T Consensus 265 V~VP~e~V 272 (275)
T d1u8va2 265 VFIPNDRI 272 (275)
T ss_dssp EEEEGGGE
T ss_pred EECcHHHe
Confidence 79999987
No 3
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=16.19 E-value=25 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.8
Q ss_pred CCccccCcEEEEe
Q 026730 42 RPRIRIDGLYVSR 54 (234)
Q Consensus 42 RPrIRfdG~YIS~ 54 (234)
-||+=.||+||+.
T Consensus 79 D~R~FlDGIYv~e 91 (93)
T d1vqoe2 79 DVRVFQDGVYITR 91 (93)
T ss_dssp CTTTCCCEEEEEE
T ss_pred CccEeecCEEEEe
Confidence 4788889999984
No 4
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.46 E-value=13 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.5
Q ss_pred cccccHHHHHHhCCccccCcEEEEee
Q 026730 30 RYEGSWRKMWLLRPRIRIDGLYVSRN 55 (234)
Q Consensus 30 ~y~~sWr~Mf~~RPrIRfdG~YIS~~ 55 (234)
.| +.+|-+.+..+...+.|+|+|+.
T Consensus 54 ~~-Dpk~Gf~I~~~~~~~~g~y~C~a 78 (95)
T d1fltx_ 54 IW-DSRKGFIISNATYKEIGLLTCEA 78 (95)
T ss_dssp EE-ETTTEEEESSCCGGGCEEEEEEE
T ss_pred EE-CCCCCEEEeCCCcccCeEEEEEE
Confidence 46 56777999999999999999986
No 5
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=12.90 E-value=51 Score=24.27 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.3
Q ss_pred eeEEEecCCeEEEeeccc
Q 026730 78 RYMRFFPSGRFIYKNSSQ 95 (234)
Q Consensus 78 RYLRFfpDGtvl~llS~~ 95 (234)
+.++|.|||+.|...+.+
T Consensus 46 ~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 46 RYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp EEEEECSSSEEEEEEEET
T ss_pred EEEEECCCCCEEEEEEcC
Confidence 578999999988766654
No 6
>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.23 E-value=1.5e+02 Score=19.69 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.3
Q ss_pred eeEEEecCCeEEEee
Q 026730 78 RYMRFFPSGRFIYKN 92 (234)
Q Consensus 78 RYLRFfpDGtvl~ll 92 (234)
.|+..|.+||.|..+
T Consensus 101 ~~~~~fG~GT~L~V~ 115 (117)
T d1dqta_ 101 PYFVGMGNGTQIYVI 115 (117)
T ss_dssp SCEEEECSCEEEECC
T ss_pred CceeEECCCEEEEEE
Confidence 577889999998764
No 7
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=10.41 E-value=58 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=21.4
Q ss_pred ecCCeEEEeeccccHHHHhhhccc
Q 026730 83 FPSGRFIYKNSSQKIKDVAKIMNF 106 (234)
Q Consensus 83 fpDGtvl~llS~~~P~~VV~~l~~ 106 (234)
+|||++..+-..-.|.++...+..
T Consensus 6 lPDG~~~~~~~g~T~~diA~~I~~ 29 (62)
T d1tkea1 6 LPDGSQRHYDHAVSPMDVALDIGP 29 (62)
T ss_dssp CTTSCEEECSSCBCHHHHHHHHCH
T ss_pred CCCCCEEEcCCCCCHHHHHHHHCc
Confidence 599999999988999999998875
No 8
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.92 E-value=30 Score=24.20 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=16.0
Q ss_pred eeEEEecCCeEEEeecccc
Q 026730 78 RYMRFFPSGRFIYKNSSQK 96 (234)
Q Consensus 78 RYLRFfpDGtvl~llS~~~ 96 (234)
-||+-.||.|++++|.+.+
T Consensus 61 eYF~tLp~nT~lm~L~~gq 79 (87)
T d1c9fa_ 61 DCFPGLPNDAELLLLTAGE 79 (87)
T ss_dssp TSCSSCCTTEEEEEECTTC
T ss_pred HHHhcCCCCCEEEEECCCC
Confidence 5888899999999998754
No 9
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.43 E-value=74 Score=22.89 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.5
Q ss_pred eeEEEecCCeEEEeecc
Q 026730 78 RYMRFFPSGRFIYKNSS 94 (234)
Q Consensus 78 RYLRFfpDGtvl~llS~ 94 (234)
...+|.|||+.|..++.
T Consensus 217 ~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 217 ETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp EEEEECTTSSEEEEEEE
T ss_pred cceEECCCCCEEEEEEc
Confidence 34579999999888765
No 10
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.33 E-value=26 Score=24.25 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=16.0
Q ss_pred eeEEEecCCeEEEeecccc
Q 026730 78 RYMRFFPSGRFIYKNSSQK 96 (234)
Q Consensus 78 RYLRFfpDGtvl~llS~~~ 96 (234)
-||+-.||.|++++|.+.+
T Consensus 58 eYF~tLp~nT~lm~L~~ge 76 (81)
T d1ibxa_ 58 DYFPSVPDNAELVLLTLGQ 76 (81)
T ss_dssp SSCSSCCSCCCEEEECSSS
T ss_pred HHHhcCCCCcEEEEECCCC
Confidence 5888899999999998764
Done!